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Shahidi N, Rozenblit F, Khani MH, Schreyer HM, Mietsch M, Protti DA, Gollisch T. Filter-based models of suppression in retinal ganglion cells: Comparison and generalization across species and stimuli. PLoS Comput Biol 2025; 21:e1013031. [PMID: 40315420 DOI: 10.1371/journal.pcbi.1013031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2024] [Accepted: 04/07/2025] [Indexed: 05/04/2025] Open
Abstract
The dichotomy of excitation and suppression is one of the canonical mechanisms explaining the complexity of neural activity. Computational models of the interplay of excitation and suppression in single neurons aim at investigating how this interaction affects a neuron's spiking responses and shapes the encoding of sensory stimuli. Here, we compare the performance of three filter-based stimulus-encoding models for predicting retinal ganglion cell responses recorded from axolotl, mouse, and marmoset retina to different types of temporally varying visual stimuli. Suppression in these models is implemented via subtractive or divisive interactions of stimulus filters or by a response-driven feedback module. For the majority of ganglion cells, the subtractive and divisive models perform similarly and outperform the feedback model as well as a linear-nonlinear (LN) model with no suppression. Comparison between the subtractive and the divisive model depends on cell type, species, and stimulus components, with the divisive model generalizing best across temporal stimulus frequencies and visual contrast and the subtractive model capturing in particular responses for slow temporal stimulus dynamics and for slow axolotl cells. Overall, we conclude that the divisive and subtractive models are well suited for capturing interactions of excitation and suppression in ganglion cells and perform best for different temporal regimes of these interactions.
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Affiliation(s)
- Neda Shahidi
- Department of Ophthalmology, University Medical Center Göttingen, Göttingen, Germany
- Bernstein Center for Computational Neuroscience Göttingen, Göttingen, Germany
- Georg-Elias-Müller-Institute for Psychology, Georg-August-Universität Göttingen, Göttingen, Germany
- Cognitive Neuroscience Lab, German Primate Center, Göttingen, Germany
| | - Fernando Rozenblit
- Department of Ophthalmology, University Medical Center Göttingen, Göttingen, Germany
- Bernstein Center for Computational Neuroscience Göttingen, Göttingen, Germany
| | - Mohammad H Khani
- Department of Ophthalmology, University Medical Center Göttingen, Göttingen, Germany
- Bernstein Center for Computational Neuroscience Göttingen, Göttingen, Germany
| | - Helene M Schreyer
- Department of Ophthalmology, University Medical Center Göttingen, Göttingen, Germany
- Bernstein Center for Computational Neuroscience Göttingen, Göttingen, Germany
| | - Matthias Mietsch
- Laboratory Animal Science Unit, German Primate Center, Göttingen, Germany
- German Center for Cardiovascular Research, Partner Site Göttingen, Göttingen, Germany
| | - Dario A Protti
- School of Medical Sciences (Neuroscience), The University of Sydney, Sydney, New South Wales, Australia
| | - Tim Gollisch
- Department of Ophthalmology, University Medical Center Göttingen, Göttingen, Germany
- Bernstein Center for Computational Neuroscience Göttingen, Göttingen, Germany
- Cluster of Excellence "Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells" (MBExC), University of Göttingen, Göttingen, Germany
- Else Kröner Fresenius Center for Optogenetic Therapies, University Medical Center Göttingen, Göttingen, Germany
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2
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Somaratna MA, Freeman AW. The receptive field construction of midget ganglion cells in primate retina. J Neurophysiol 2025; 133:268-285. [PMID: 39665207 DOI: 10.1152/jn.00302.2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2024] [Revised: 12/02/2024] [Accepted: 12/02/2024] [Indexed: 12/13/2024] Open
Abstract
The midget pathway of the primate retina provides the visual system with the foundations for high spatial resolution and color perception. An essential contributor to these properties is center-surround organization, in which responses from the central area of a cell's receptive field are antagonized by responses from a surrounding area. Two key questions about center-surround organization are unresolved. First, the surround is largely or completely due to negative feedback from horizontal cells to cones: how can this feedback be reconciled with the popular difference of Gaussians (DOG) model, which implies feedforward inhibition? Second, can the spatial extent of center and surround be predicted from the components-optics, horizontal cell receptive field, ganglion cell dendrites-that give rise to them? We address these questions with a computational model of midget pathway signal processing in macaque retina; model parameters are derived from published literature. We show that, contrary to the DOG model, the surround's effect is better treated as divisive. A simplified version of our model-a ratio of Gaussians (ROG) model-has practical advantages over the DOG, such as accounting for spatiotemporal interactions and pulse responses. The ROG model also shows that both center and surround radii can be calculated from a sum of squared radii of their components. Finally, chromatic antagonism between center and surround in the full model predicts cone opponency as a function of eccentricity. We suggest that a signal-processing model gives new insight into retinal function.NEW & NOTEWORTHY We simulated signal processing from cones to midget ganglion cells in the monkey retina and found that: 1) center/surround structure is better described as a ratio of Gaussian functions than as the traditional difference of Gaussians; 2) ganglion cell center and surround radii can be calculated from a sum of squares of radii in upstream stages; 3) the model can predict chromatic dominance in the center and surround mechanisms as a function of eccentricity.
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Affiliation(s)
- Manula A Somaratna
- Save Sight Institute, The University of Sydney, Sydney, New South Wales, Australia
| | - Alan W Freeman
- Save Sight Institute, The University of Sydney, Sydney, New South Wales, Australia
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3
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Idrees S, Manookin MB, Rieke F, Field GD, Zylberberg J. Biophysical neural adaptation mechanisms enable artificial neural networks to capture dynamic retinal computation. Nat Commun 2024; 15:5957. [PMID: 39009568 PMCID: PMC11251147 DOI: 10.1038/s41467-024-50114-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Accepted: 06/28/2024] [Indexed: 07/17/2024] Open
Abstract
Adaptation is a universal aspect of neural systems that changes circuit computations to match prevailing inputs. These changes facilitate efficient encoding of sensory inputs while avoiding saturation. Conventional artificial neural networks (ANNs) have limited adaptive capabilities, hindering their ability to reliably predict neural output under dynamic input conditions. Can embedding neural adaptive mechanisms in ANNs improve their performance? To answer this question, we develop a new deep learning model of the retina that incorporates the biophysics of photoreceptor adaptation at the front-end of conventional convolutional neural networks (CNNs). These conventional CNNs build on 'Deep Retina,' a previously developed model of retinal ganglion cell (RGC) activity. CNNs that include this new photoreceptor layer outperform conventional CNN models at predicting male and female primate and rat RGC responses to naturalistic stimuli that include dynamic local intensity changes and large changes in the ambient illumination. These improved predictions result directly from adaptation within the phototransduction cascade. This research underscores the potential of embedding models of neural adaptation in ANNs and using them to determine how neural circuits manage the complexities of encoding natural inputs that are dynamic and span a large range of light levels.
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Affiliation(s)
- Saad Idrees
- Department of Physics and Astronomy, York University, Toronto, ON, Canada.
- Centre for Vision Research, York University, Toronto, ON, Canada.
| | | | - Fred Rieke
- Department of Physiology and Biophysics, University of Washington, Seattle, WA, USA
| | - Greg D Field
- Stein Eye Institute, Department of Ophthalmology, University of California, Los Angeles, CA, USA
| | - Joel Zylberberg
- Department of Physics and Astronomy, York University, Toronto, ON, Canada.
- Centre for Vision Research, York University, Toronto, ON, Canada.
- Learning in Machines and Brains Program, Canadian Institute for Advanced Research, Toronto, ON, Canada.
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4
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Zhou J, Whitmire M, Chen Y, Seidemann E. Disparate nonlinear neural dynamics measured with different techniques in macaque and human V1. Sci Rep 2024; 14:13193. [PMID: 38851784 PMCID: PMC11162458 DOI: 10.1038/s41598-024-63685-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Accepted: 05/31/2024] [Indexed: 06/10/2024] Open
Abstract
Diverse neuro-imaging techniques measure different aspects of neural responses with distinct spatial and temporal resolutions. Relating measured neural responses across different methods has been challenging. Here, we take a step towards overcoming this challenge, by comparing the nonlinearity of neural dynamics measured across methods. We used widefield voltage-sensitive dye imaging (VSDI) to measure neural population responses in macaque V1 to visual stimuli with a wide range of temporal waveforms. We found that stimulus-evoked VSDI responses are surprisingly near-additive in time. These results are qualitatively different from the strong sub-additive dynamics previously measured using fMRI and electrocorticography (ECoG) in human visual cortex with a similar set of stimuli. To test whether this discrepancy is specific to VSDI-a signal dominated by subthreshold neural activity, we repeated our measurements using widefield imaging of a genetically encoded calcium indicator (GcaMP6f)-a signal dominated by spiking activity, and found that GCaMP signals in macaque V1 are also near-additive. Therefore, the discrepancies in the extent of sub-additivity between the macaque and the human measurements are unlikely due to differences between sub- and supra-threshold neural responses. Finally, we use a simple yet flexible delayed normalization model to capture these different dynamics across measurements (with different model parameters). The model can potentially generalize to a broader set of stimuli, which aligns with previous suggestion that dynamic gain-control is a canonical computation contributing to neural processing in the brain.
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Affiliation(s)
- Jingyang Zhou
- Center for Computational Neuroscience, Flatiron Institute, New York, USA.
- Center for Neural Science, New York University, New York, USA.
| | - Matt Whitmire
- Center for Perceptual Systems, University of Texas, Austin, Austin, USA
- Center for Theoretical and Computational Neuroscience, University of Texas, Austin, Austin, USA
- Department of Psychology, University of Texas, Austin, Austin, USA
- Department of Neuroscience, University of Texas, Austin, Austin, USA
| | - Yuzhi Chen
- Center for Perceptual Systems, University of Texas, Austin, Austin, USA
- Center for Theoretical and Computational Neuroscience, University of Texas, Austin, Austin, USA
- Department of Psychology, University of Texas, Austin, Austin, USA
- Department of Neuroscience, University of Texas, Austin, Austin, USA
| | - Eyal Seidemann
- Center for Perceptual Systems, University of Texas, Austin, Austin, USA.
- Center for Theoretical and Computational Neuroscience, University of Texas, Austin, Austin, USA.
- Department of Psychology, University of Texas, Austin, Austin, USA.
- Department of Neuroscience, University of Texas, Austin, Austin, USA.
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5
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Huang S, Hu P, Zhao Z, Shi L. Dynamic Nonlinear Spatial Integrations on Encoding Contrasting Stimuli of Tectal Neurons. Animals (Basel) 2024; 14:1577. [PMID: 38891623 PMCID: PMC11171053 DOI: 10.3390/ani14111577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Revised: 05/23/2024] [Accepted: 05/23/2024] [Indexed: 06/21/2024] Open
Abstract
Animals detect targets using a variety of visual cues, with the visual salience of these cues determining which environmental features receive priority attention and further processing. Surround modulation plays a crucial role in generating visual saliency, which has been extensively studied in avian tectal neurons. Recent work has reported that the suppression of tectal neurons induced by motion contrasting stimulus is stronger than that by luminance contrasting stimulus. However, the underlying mechanism remains poorly understood. In this study, we built a computational model (called Generalized Linear-Dynamic Modulation) which incorporates independent nonlinear tuning mechanisms for excitatory and inhibitory inputs. This model aims to describe how tectal neurons encode contrasting stimuli. The results showed that: (1) The dynamic nonlinear integration structure substantially improved the accuracy (significant difference (p < 0.001, paired t-test) in the goodness of fit between the two models) of the predicted responses to contrasting stimuli, verifying the nonlinear processing performed by tectal neurons. (2) The modulation difference between luminance and motion contrasting stimuli emerged from the predicted response by the full model but not by that with only excitatory synaptic input (spatial luminance: 89 ± 2.8% (GL_DM) vs. 87 ± 2.1% (GL_DMexc); motion contrasting stimuli: 87 ± 1.7% (GL_DM) vs. 83 ± 2.2% (GL_DMexc)). These results validate the proposed model and further suggest the role of dynamic nonlinear spatial integrations in contextual visual information processing, especially in spatial integration, which is important for object detection performed by birds.
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Affiliation(s)
- Shuman Huang
- Key Laboratory of Artificial Intelligence and Personalized Learning in Education of Henan Province, College of Computer and Information Engineering, Henan Normal University, Xinxiang 453007, China
| | - Pingge Hu
- Department of Automation, Tsinghua University, Beijing 100084, China;
| | - Zhenmeng Zhao
- School of Software, Henan Normal University, Xinxiang 453007, China;
| | - Li Shi
- Department of Automation, Tsinghua University, Beijing 100084, China;
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Scalabrino ML, Thapa M, Chew LA, Zhang E, Xu J, Sampath AP, Chen J, Field GD. Robust cone-mediated signaling persists late into rod photoreceptor degeneration. eLife 2022; 11:e80271. [PMID: 36040015 PMCID: PMC9560159 DOI: 10.7554/elife.80271] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2022] [Accepted: 08/25/2022] [Indexed: 01/13/2023] Open
Abstract
Rod photoreceptor degeneration causes deterioration in the morphology and physiology of cone photoreceptors along with changes in retinal circuits. These changes could diminish visual signaling at cone-mediated light levels, thereby limiting the efficacy of treatments such as gene therapy for rescuing normal, cone-mediated vision. However, the impact of progressive rod death on cone-mediated signaling remains unclear. To investigate the fidelity of retinal ganglion cell (RGC) signaling throughout disease progression, we used a mouse model of rod degeneration (Cngb1neo/neo). Despite clear deterioration of cone morphology with rod death, cone-mediated signaling among RGCs remained surprisingly robust: spatiotemporal receptive fields changed little and the mutual information between stimuli and spiking responses was relatively constant. This relative stability held until nearly all rods had died and cones had completely lost well-formed outer segments. Interestingly, RGC information rates were higher and more stable for natural movies than checkerboard noise as degeneration progressed. The main change in RGC responses with photoreceptor degeneration was a decrease in response gain. These results suggest that gene therapies for rod degenerative diseases are likely to prolong cone-mediated vision even if there are changes to cone morphology and density.
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Affiliation(s)
- Miranda L Scalabrino
- Department of Neurobiology, Duke University School of MedicineDurhamUnited States
| | - Mishek Thapa
- Department of Neurobiology, Duke University School of MedicineDurhamUnited States
| | - Lindsey A Chew
- Department of Neurobiology, Duke University School of MedicineDurhamUnited States
| | - Esther Zhang
- Department of Neurobiology, Duke University School of MedicineDurhamUnited States
| | - Jason Xu
- Department of Statistical Science, Duke UniversityDurhamUnited States
| | - Alapakkam P Sampath
- Jules Stein Eye Institute, University of California, Los AngelesLos AngelesUnited States
| | - Jeannie Chen
- Zilkha Neurogenetics Institute, Keck School of Medicine, University of Southern CaliforniaLos AngelesUnited States
| | - Greg D Field
- Department of Neurobiology, Duke University School of MedicineDurhamUnited States
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7
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Rinzema NJ, Sofiadis K, Tjalsma SJD, Verstegen MJAM, Oz Y, Valdes-Quezada C, Felder AK, Filipovska T, van der Elst S, de Andrade Dos Ramos Z, Han R, Krijger PHL, de Laat W. Building regulatory landscapes reveals that an enhancer can recruit cohesin to create contact domains, engage CTCF sites and activate distant genes. Nat Struct Mol Biol 2022; 29:563-574. [PMID: 35710842 PMCID: PMC9205769 DOI: 10.1038/s41594-022-00787-7] [Citation(s) in RCA: 82] [Impact Index Per Article: 27.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Accepted: 04/25/2022] [Indexed: 12/14/2022]
Abstract
Developmental gene expression is often controlled by distal regulatory DNA elements called enhancers. Distant enhancer action is restricted to structural chromosomal domains that are flanked by CTCF-associated boundaries and formed through cohesin chromatin loop extrusion. To better understand how enhancers, genes and CTCF boundaries together form structural domains and control expression, we used a bottom-up approach, building series of active regulatory landscapes in inactive chromatin. We demonstrate here that gene transcription levels and activity over time reduce with increased enhancer distance. The enhancer recruits cohesin to stimulate domain formation and engage flanking CTCF sites in loop formation. It requires cohesin exclusively for the activation of distant genes, not of proximal genes, with nearby CTCF boundaries supporting efficient long-range enhancer action. Our work supports a dual activity model for enhancers: its classic role of stimulating transcription initiation and elongation from target gene promoters and a role of recruiting cohesin for the creation of chromosomal domains, the engagement of CTCF sites in chromatin looping and the activation of distal target genes.
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Affiliation(s)
- Niels J Rinzema
- Oncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht, the Netherlands
| | - Konstantinos Sofiadis
- Oncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht, the Netherlands
| | - Sjoerd J D Tjalsma
- Oncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht, the Netherlands
| | - Marjon J A M Verstegen
- Oncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht, the Netherlands
| | - Yuva Oz
- Oncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht, the Netherlands
| | - Christian Valdes-Quezada
- Oncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht, the Netherlands
| | - Anna-Karina Felder
- Oncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht, the Netherlands
| | - Teodora Filipovska
- Oncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht, the Netherlands
| | - Stefan van der Elst
- Oncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht, the Netherlands
| | - Zaria de Andrade Dos Ramos
- Oncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht, the Netherlands
| | - Ruiqi Han
- Oncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht, the Netherlands
| | - Peter H L Krijger
- Oncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht, the Netherlands
| | - Wouter de Laat
- Oncode Institute, Hubrecht Institute-KNAW and University Medical Center Utrecht, Utrecht, the Netherlands.
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8
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Diurnal changes in the efficiency of information transmission at a sensory synapse. Nat Commun 2022; 13:2613. [PMID: 35551183 PMCID: PMC9098879 DOI: 10.1038/s41467-022-30202-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Accepted: 04/21/2022] [Indexed: 11/29/2022] Open
Abstract
Neuromodulators adapt sensory circuits to changes in the external world or the animal’s internal state and synapses are key control sites for such plasticity. Less clear is how neuromodulation alters the amount of information transmitted through the circuit. We investigated this question in the context of the diurnal regulation of visual processing in the retina of zebrafish, focusing on ribbon synapses of bipolar cells. We demonstrate that contrast-sensitivity peaks in the afternoon accompanied by a four-fold increase in the average Shannon information transmitted from an active zone. This increase reflects higher synaptic gain, lower spontaneous “noise” and reduced variability of evoked responses. Simultaneously, an increase in the probability of multivesicular events with larger information content increases the efficiency of transmission (bits per vesicle) by factors of 1.5-2.7. This study demonstrates the multiplicity of mechanisms by which a neuromodulator can adjust the synaptic transfer of sensory information. Neuromodulators can adjust how sensory signals are processed. In this study, the authors demonstrate how time of day affects the way information is transmitted in the zebrafish retina.
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9
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Zapp SJ, Nitsche S, Gollisch T. Retinal receptive-field substructure: scaffolding for coding and computation. Trends Neurosci 2022; 45:430-445. [DOI: 10.1016/j.tins.2022.03.005] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Revised: 02/28/2022] [Accepted: 03/17/2022] [Indexed: 11/29/2022]
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10
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Angueyra JM, Baudin J, Schwartz GW, Rieke F. Predicting and Manipulating Cone Responses to Naturalistic Inputs. J Neurosci 2022; 42:1254-1274. [PMID: 34949692 PMCID: PMC8883858 DOI: 10.1523/jneurosci.0793-21.2021] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2021] [Revised: 11/06/2021] [Accepted: 12/03/2021] [Indexed: 11/21/2022] Open
Abstract
Primates explore their visual environment by making frequent saccades, discrete and ballistic eye movements that direct the fovea to specific regions of interest. Saccades produce large and rapid changes in input. The magnitude of these changes and the limited signaling range of visual neurons mean that effective encoding requires rapid adaptation. Here, we explore how macaque cone photoreceptors maintain sensitivity under these conditions. Adaptation makes cone responses to naturalistic stimuli highly nonlinear and dependent on stimulus history. Such responses cannot be explained by linear or linear-nonlinear models but are well explained by a biophysical model of phototransduction based on well-established biochemical interactions. The resulting model can predict cone responses to a broad range of stimuli and enables the design of stimuli that elicit specific (e.g., linear) cone photocurrents. These advances will provide a foundation for investigating the contributions of cone phototransduction and post-transduction processing to visual function.SIGNIFICANCE STATEMENT We know a great deal about adaptational mechanisms that adjust sensitivity to slow changes in visual inputs such as the rising or setting sun. We know much less about the rapid adaptational mechanisms that are essential for maintaining sensitivity as gaze shifts around a single visual scene. We characterize how phototransduction in cone photoreceptors adapts to rapid changes in input similar to those encountered during natural vision. We incorporate these measurements into a quantitative model that can predict cone responses across a broad range of stimuli. This model not only shows how cone phototransduction aids the encoding of natural inputs but also provides a tool to identify the role of the cone responses in shaping those of downstream visual neurons.
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Affiliation(s)
- Juan M Angueyra
- Department of Physiology and Biophysics, University of Washington, Seattle, Washington 98195
- National Eye Institute, National Institutes of Health, Bethesda, Maryland 20892
| | - Jacob Baudin
- Department of Physiology and Biophysics, University of Washington, Seattle, Washington 98195
| | - Gregory W Schwartz
- Department of Physiology and Biophysics, University of Washington, Seattle, Washington 98195
- Departments of Ophthalmology and Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, Illinois 60511
| | - Fred Rieke
- Department of Physiology and Biophysics, University of Washington, Seattle, Washington 98195
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11
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Niu X, Huang S, Zhu M, Wang Z, Shi L. Surround Modulation Properties of Tectal Neurons in Pigeons Characterized by Moving and Flashed Stimuli. Animals (Basel) 2022; 12:ani12040475. [PMID: 35203185 PMCID: PMC8868286 DOI: 10.3390/ani12040475] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Revised: 02/09/2022] [Accepted: 02/10/2022] [Indexed: 11/16/2022] Open
Abstract
Simple Summary Surround modulation is a basic visual attribute of sensory neurons in many species and has been extensively characterized in mammal primary visual cortex, lateral geniculate nucleus, and superior colliculus. Little attention has been paid to birds, which have a highly developed visual system. We undertook a systematic analysis on surround modulation properties of tectal neurons in pigeons (Columba livia). This study complements existing studies on surrounding modulation properties in non-mammalian species and deepens the understanding of mechanisms of figure–background segmentation performed by avians. Abstract Surround modulation has been abundantly studied in several mammalian brain areas, including the primary visual cortex, lateral geniculate nucleus, and superior colliculus (SC), but systematic analysis is lacking in the avian optic tectum (OT, homologous to mammal SC). Here, multi-units were recorded from pigeon (Columba livia) OT, and responses to different sizes of moving, flashed squares, and bars were compared. The statistical results showed that most tectal neurons presented suppressed responses to larger stimuli in both moving and flashed paradigms, and suppression induced by flashed squares was comparable with moving ones when the stimuli center crossed the near classical receptive field (CRF) center, which corresponded to the full surrounding condition. Correspondingly, the suppression grew weaker when the stimuli center moved across the CRF border, equivalent to partially surrounding conditions. Similarly, suppression induced by full surrounding flashed squares was more intense than by partially surrounding flashed bars. These results suggest that inhibitions performed on tectal neurons appear to be full surrounding rather than locally lateral. This study enriches the understanding of surround modulation properties of avian tectum neurons and provides possible hypotheses about the arrangement of inhibitions from other nuclei, both of which are important for clarifying the mechanism of target detection against clutter background performed by avians.
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Affiliation(s)
- Xiaoke Niu
- Henan Key Laboratory of Brain Science and Brain-Computer Interface Technology, School of Electrical Engineering, Zhengzhou University, Zhengzhou 450001, China; (X.N.); (S.H.); (M.Z.); (Z.W.)
| | - Shuman Huang
- Henan Key Laboratory of Brain Science and Brain-Computer Interface Technology, School of Electrical Engineering, Zhengzhou University, Zhengzhou 450001, China; (X.N.); (S.H.); (M.Z.); (Z.W.)
| | - Minjie Zhu
- Henan Key Laboratory of Brain Science and Brain-Computer Interface Technology, School of Electrical Engineering, Zhengzhou University, Zhengzhou 450001, China; (X.N.); (S.H.); (M.Z.); (Z.W.)
| | - Zhizhong Wang
- Henan Key Laboratory of Brain Science and Brain-Computer Interface Technology, School of Electrical Engineering, Zhengzhou University, Zhengzhou 450001, China; (X.N.); (S.H.); (M.Z.); (Z.W.)
| | - Li Shi
- Henan Key Laboratory of Brain Science and Brain-Computer Interface Technology, School of Electrical Engineering, Zhengzhou University, Zhengzhou 450001, China; (X.N.); (S.H.); (M.Z.); (Z.W.)
- Department of Automation, Tsinghua University, Beijing 100084, China
- Correspondence:
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12
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von Engelhardt J. Role of AMPA receptor desensitization in short term depression - lessons from retinogeniculate synapses. J Physiol 2021; 600:201-215. [PMID: 34197645 DOI: 10.1113/jp280878] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Accepted: 06/28/2021] [Indexed: 12/22/2022] Open
Abstract
Repetitive synapse activity induces various forms of short-term plasticity. The role of presynaptic mechanisms such as residual Ca2+ and vesicle depletion in short-term facilitation and short-term depression is well established. On the other hand, the contribution of postsynaptic mechanisms such as receptor desensitization and saturation to short-term plasticity is less well known and often ignored. In this review, I will describe short-term plasticity in retinogeniculate synapses of relay neurons of the dorsal lateral geniculate nucleus (dLGN) to exemplify the synaptic properties that facilitate the contribution of AMPA receptor desensitization to short-term plasticity. These include high vesicle release probability, glutamate spillover and, importantly, slow recovery from desensitization of AMPA receptors. The latter is strongly regulated by the interaction of AMPA receptors with auxiliary proteins such as CKAMP44. Finally, I discuss the relevance of short-term plasticity in retinogeniculate synapses for the processing of visual information by LGN relay neurons.
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Affiliation(s)
- Jakob von Engelhardt
- Institute of Pathophysiology, Focus Program Translational Neuroscience (FTN), University Medical Center of the Johannes Gutenberg University Mainz, Mainz, Germany
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13
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Lazar AA, Ukani NH, Zhou Y. Sparse identification of contrast gain control in the fruit fly photoreceptor and amacrine cell layer. JOURNAL OF MATHEMATICAL NEUROSCIENCE 2020; 10:3. [PMID: 32052209 PMCID: PMC7016054 DOI: 10.1186/s13408-020-0080-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2019] [Accepted: 01/28/2020] [Indexed: 05/05/2023]
Abstract
The fruit fly's natural visual environment is often characterized by light intensities ranging across several orders of magnitude and by rapidly varying contrast across space and time. Fruit fly photoreceptors robustly transduce and, in conjunction with amacrine cells, process visual scenes and provide the resulting signal to downstream targets. Here, we model the first step of visual processing in the photoreceptor-amacrine cell layer. We propose a novel divisive normalization processor (DNP) for modeling the computation taking place in the photoreceptor-amacrine cell layer. The DNP explicitly models the photoreceptor feedforward and temporal feedback processing paths and the spatio-temporal feedback path of the amacrine cells. We then formally characterize the contrast gain control of the DNP and provide sparse identification algorithms that can efficiently identify each the feedforward and feedback DNP components. The algorithms presented here are the first demonstration of tractable and robust identification of the components of a divisive normalization processor. The sparse identification algorithms can be readily employed in experimental settings, and their effectiveness is demonstrated with several examples.
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Affiliation(s)
- Aurel A. Lazar
- Department of Electrical Engineering, Columbia University, New York, USA
| | - Nikul H. Ukani
- Department of Electrical Engineering, Columbia University, New York, USA
| | - Yiyin Zhou
- Department of Electrical Engineering, Columbia University, New York, USA
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14
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Latimer KW, Rieke F, Pillow JW. Inferring synaptic inputs from spikes with a conductance-based neural encoding model. eLife 2019; 8:47012. [PMID: 31850846 PMCID: PMC6989090 DOI: 10.7554/elife.47012] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2019] [Accepted: 12/17/2019] [Indexed: 01/15/2023] Open
Abstract
Descriptive statistical models of neural responses generally aim to characterize the mapping from stimuli to spike responses while ignoring biophysical details of the encoding process. Here, we introduce an alternative approach, the conductance-based encoding model (CBEM), which describes a mapping from stimuli to excitatory and inhibitory synaptic conductances governing the dynamics of sub-threshold membrane potential. Remarkably, we show that the CBEM can be fit to extracellular spike train data and then used to predict excitatory and inhibitory synaptic currents. We validate these predictions with intracellular recordings from macaque retinal ganglion cells. Moreover, we offer a novel quasi-biophysical interpretation of the Poisson generalized linear model (GLM) as a special case of the CBEM in which excitation and inhibition are perfectly balanced. This work forges a new link between statistical and biophysical models of neural encoding and sheds new light on the biophysical variables that underlie spiking in the early visual pathway.
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Affiliation(s)
- Kenneth W Latimer
- Department of Physiology and Biophysics, University of Washington, Seattle, United States
| | - Fred Rieke
- Department of Physiology and Biophysics, University of Washington, Seattle, United States
| | - Jonathan W Pillow
- Princeton Neuroscience Institute, Department of Psychology, Princeton University, Princeton, United States
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15
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Weber AI, Fairhall AL. The role of adaptation in neural coding. Curr Opin Neurobiol 2019; 58:135-140. [DOI: 10.1016/j.conb.2019.09.013] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Revised: 08/30/2019] [Accepted: 09/12/2019] [Indexed: 10/25/2022]
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16
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Abstract
With modern neurophysiological methods able to record neural activity throughout the visual pathway in the context of arbitrarily complex visual stimulation, our understanding of visual system function is becoming limited by the available models of visual neurons that can be directly related to such data. Different forms of statistical models are now being used to probe the cellular and circuit mechanisms shaping neural activity, understand how neural selectivity to complex visual features is computed, and derive the ways in which neurons contribute to systems-level visual processing. However, models that are able to more accurately reproduce observed neural activity often defy simple interpretations. As a result, rather than being used solely to connect with existing theories of visual processing, statistical modeling will increasingly drive the evolution of more sophisticated theories.
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Affiliation(s)
- Daniel A. Butts
- Department of Biology and Program in Neuroscience and Cognitive Science, University of Maryland, College Park, Maryland 20742, USA
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17
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Abstract
Adaptation is a common principle that recurs throughout the nervous system at all stages of processing. This principle manifests in a variety of phenomena, from spike frequency adaptation, to apparent changes in receptive fields with changes in stimulus statistics, to enhanced responses to unexpected stimuli. The ubiquity of adaptation leads naturally to the question: What purpose do these different types of adaptation serve? A diverse set of theories, often highly overlapping, has been proposed to explain the functional role of adaptive phenomena. In this review, we discuss several of these theoretical frameworks, highlighting relationships among them and clarifying distinctions. We summarize observations of the varied manifestations of adaptation, particularly as they relate to these theoretical frameworks, focusing throughout on the visual system and making connections to other sensory systems.
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Affiliation(s)
- Alison I Weber
- Department of Physiology and Biophysics and Computational Neuroscience Center, University of Washington, Seattle, Washington 98195, USA; ,
| | - Kamesh Krishnamurthy
- Neuroscience Institute and Center for Physics of Biological Function, Department of Physics, Princeton University, Princeton, New Jersey 08544, USA;
| | - Adrienne L Fairhall
- Department of Physiology and Biophysics and Computational Neuroscience Center, University of Washington, Seattle, Washington 98195, USA; , .,UW Institute for Neuroengineering, University of Washington, Seattle, Washington 98195, USA
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18
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Shi Q, Gupta P, Boukhvalova AK, Singer JH, Butts DA. Functional characterization of retinal ganglion cells using tailored nonlinear modeling. Sci Rep 2019; 9:8713. [PMID: 31213620 PMCID: PMC6581951 DOI: 10.1038/s41598-019-45048-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2018] [Accepted: 05/31/2019] [Indexed: 01/30/2023] Open
Abstract
The mammalian retina encodes the visual world in action potentials generated by 20-50 functionally and anatomically-distinct types of retinal ganglion cell (RGC). Individual RGC types receive synaptic input from distinct presynaptic circuits; therefore, their responsiveness to specific features in the visual scene arises from the information encoded in synaptic input and shaped by postsynaptic signal integration and spike generation. Unfortunately, there is a dearth of tools for characterizing the computations reflected in RGC spike output. Therefore, we developed a statistical model, the separable Nonlinear Input Model, to characterize the excitatory and suppressive components of RGC receptive fields. We recorded RGC responses to a correlated noise ("cloud") stimulus in an in vitro preparation of mouse retina and found that our model accurately predicted RGC responses at high spatiotemporal resolution. It identified multiple receptive fields reflecting the main excitatory and suppressive components of the response of each neuron. Significantly, our model accurately identified ON-OFF cells and distinguished their distinct ON and OFF receptive fields, and it demonstrated a diversity of suppressive receptive fields in the RGC population. In total, our method offers a rich description of RGC computation and sets a foundation for relating it to retinal circuitry.
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Affiliation(s)
- Qing Shi
- Department of Biology, University of Maryland, College Park, MD, United States.
| | - Pranjal Gupta
- Department of Biology, University of Maryland, College Park, MD, United States
| | | | - Joshua H Singer
- Department of Biology, University of Maryland, College Park, MD, United States
- Program in Neuroscience and Cognitive Science, University of Maryland, College Park, MD, United States
| | - Daniel A Butts
- Department of Biology, University of Maryland, College Park, MD, United States
- Program in Neuroscience and Cognitive Science, University of Maryland, College Park, MD, United States
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19
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Simulated Saccadic Stimuli Suppress ON-Type Direction-Selective Retinal Ganglion Cells via Glycinergic Inhibition. J Neurosci 2019; 39:4312-4322. [PMID: 30926751 DOI: 10.1523/jneurosci.3066-18.2019] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2018] [Revised: 03/18/2019] [Accepted: 03/19/2019] [Indexed: 02/06/2023] Open
Abstract
Two types of mammalian direction-selective ganglion cells (DSGCs), ON and ONOFF, operate over different speed ranges. The directional axes of the ON-DSGCs are thought to align with the axes of the vestibular system and provide sensitivity at rotational velocities that are too slow to activate the semicircular canals. ONOFF-DSGCs respond to faster image velocities. Using natural images that simulate the natural visual inputs to freely moving animals, we show that simulated visual saccades suppress responses in ON-DSGCs but not ONOFF-DSGCs recorded in retinas of domestic rabbits of either gender. Analysis of the synaptic inputs shows that this saccadic suppression results from glycinergic inputs that are specific to ON-DSGCs and are absent in ONOFF-DSGCs. When this glycinergic input is blocked, both cell types respond similarly to visual saccades and display essentially identical speed tuning. The results demonstrate that glycinergic circuits within the retina can produce saccadic suppression of retinal ganglion cell activity. The cell-type-specific targeting of the glycinergic circuits further supports the proposed physiological roles of ON-DSGCs in retinal-image stabilization and of ONOFF-DSGCs in detecting local object motion and signaling optical flow.SIGNIFICANCE STATEMENT In the mammalian retina, ON direction-selective ganglion cells (DSGCs) respond preferentially to slow image motion, whereas ONOFF-DSGCs respond better to rapid motion. The mechanisms producing this different speed tuning remain unclear. Here we show that simulated visual saccades suppress ON-DSGCs, but not ONOFF-DSGCs. This selective saccadic suppression is because of the selective targeting of glycinergic inhibitory synaptic inputs to ON-DSGCs. The different saccadic suppression in the two cell types points to different physiological roles, consistent with their projections to distinct areas within the brain. ON-DSGCs may be critical for providing the visual feedback signals that contribute to stabilizing the image on the retina, whereas ONOFF-DSGCs may be important for detecting the onset of saccades or for signaling optical flow.
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20
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Tang MF, Smout CA, Arabzadeh E, Mattingley JB. Prediction error and repetition suppression have distinct effects on neural representations of visual information. eLife 2018; 7:33123. [PMID: 30547881 PMCID: PMC6312401 DOI: 10.7554/elife.33123] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2017] [Accepted: 12/13/2018] [Indexed: 12/28/2022] Open
Abstract
Predictive coding theories argue that recent experience establishes expectations in the brain that generate prediction errors when violated. Prediction errors provide a possible explanation for repetition suppression, where evoked neural activity is attenuated across repeated presentations of the same stimulus. The predictive coding account argues repetition suppression arises because repeated stimuli are expected, whereas non-repeated stimuli are unexpected and thus elicit larger neural responses. Here, we employed electroencephalography in humans to test the predictive coding account of repetition suppression by presenting sequences of visual gratings with orientations that were expected either to repeat or change in separate blocks of trials. We applied multivariate forward modelling to determine how orientation selectivity was affected by repetition and prediction. Unexpected stimuli were associated with significantly enhanced orientation selectivity, whereas selectivity was unaffected for repeated stimuli. Our results suggest that repetition suppression and expectation have separable effects on neural representations of visual feature information.
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Affiliation(s)
- Matthew F Tang
- Queensland Brain Institute, The University of Queensland, St Lucia, Australia.,Australian Research Council Centre of Excellence for Integrative Brain Function, Victoria, Australia
| | - Cooper A Smout
- Queensland Brain Institute, The University of Queensland, St Lucia, Australia.,Australian Research Council Centre of Excellence for Integrative Brain Function, Victoria, Australia
| | - Ehsan Arabzadeh
- Australian Research Council Centre of Excellence for Integrative Brain Function, Victoria, Australia.,Eccles Institute of Neuroscience, John Curtin School of Medical Research, The Australian National University, Canberra, Australia
| | - Jason B Mattingley
- Queensland Brain Institute, The University of Queensland, St Lucia, Australia.,Australian Research Council Centre of Excellence for Integrative Brain Function, Victoria, Australia.,School of Psychology, The University of Queensland, St Lucia, Australia
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21
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Ozuysal Y, Kastner DB, Baccus SA. Adaptive feature detection from differential processing in parallel retinal pathways. PLoS Comput Biol 2018; 14:e1006560. [PMID: 30457994 PMCID: PMC6245510 DOI: 10.1371/journal.pcbi.1006560] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2018] [Accepted: 10/11/2018] [Indexed: 11/25/2022] Open
Abstract
To transmit information efficiently in a changing environment, the retina adapts to visual contrast by adjusting its gain, latency and mean response. Additionally, the temporal frequency selectivity, or bandwidth changes to encode the absolute intensity when the stimulus environment is noisy, and intensity differences when noise is low. We show that the On pathway of On-Off retinal amacrine and ganglion cells is required to change temporal bandwidth but not other adaptive properties. This remarkably specific adaptive mechanism arises from differential effects of contrast on the On and Off pathways. We analyzed a biophysical model fit only to a cell’s membrane potential, and verified pharmacologically that it accurately revealed the two pathways. We conclude that changes in bandwidth arise mostly from differences in synaptic threshold in the two pathways, rather than synaptic release dynamics as has previously been proposed to underlie contrast adaptation. Different efficient codes are selected by different thresholds in two independently adapting neural pathways.
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Affiliation(s)
- Yusuf Ozuysal
- Department of Electrical Engineering, Stanford University, Stanford, CA, United States of America
| | - David B. Kastner
- Neuroscience Program, Stanford University, Stanford, CA, United States of America
| | - Stephen A. Baccus
- Department of Neurobiology, Stanford University, Stanford, CA, United States of America
- * E-mail:
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22
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Derivatives and inverse of cascaded linear+nonlinear neural models. PLoS One 2018; 13:e0201326. [PMID: 30321175 PMCID: PMC6188639 DOI: 10.1371/journal.pone.0201326] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2017] [Accepted: 07/11/2018] [Indexed: 11/20/2022] Open
Abstract
In vision science, cascades of Linear+Nonlinear transforms are very successful in modeling a number of perceptual experiences. However, the conventional literature is usually too focused on only describing the forward input-output transform. Instead, in this work we present the mathematics of such cascades beyond the forward transform, namely the Jacobian matrices and the inverse. The fundamental reason for this analytical treatment is that it offers useful analytical insight into the psychophysics, the physiology, and the function of the visual system. For instance, we show how the trends of the sensitivity (volume of the discrimination regions) and the adaptation of the receptive fields can be identified in the expression of the Jacobian w.r.t. the stimulus. This matrix also tells us which regions of the stimulus space are encoded more efficiently in multi-information terms. The Jacobian w.r.t. the parameters shows which aspects of the model have bigger impact in the response, and hence their relative relevance. The analytic inverse implies conditions for the response and model parameters to ensure appropriate decoding. From the experimental and applied perspective, (a) the Jacobian w.r.t. the stimulus is necessary in new experimental methods based on the synthesis of visual stimuli with interesting geometrical properties, (b) the Jacobian matrices w.r.t. the parameters are convenient to learn the model from classical experiments or alternative goal optimization, and (c) the inverse is a promising model-based alternative to blind machine-learning methods for neural decoding that do not include meaningful biological information. The theory is checked by building and testing a vision model that actually follows a modular Linear+Nonlinear program. Our illustrative derivable and invertible model consists of a cascade of modules that account for brightness, contrast, energy masking, and wavelet masking. To stress the generality of this modular setting we show examples where some of the canonical Divisive Normalization modules are substituted by equivalent modules such as the Wilson-Cowan interaction model (at the V1 cortex) or a tone-mapping model (at the retina).
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23
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Turner MH, Schwartz GW, Rieke F. Receptive field center-surround interactions mediate context-dependent spatial contrast encoding in the retina. eLife 2018; 7:e38841. [PMID: 30188320 PMCID: PMC6185113 DOI: 10.7554/elife.38841] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2018] [Accepted: 08/29/2018] [Indexed: 11/30/2022] Open
Abstract
Antagonistic receptive field surrounds are a near-universal property of early sensory processing. A key assumption in many models for retinal ganglion cell encoding is that receptive field surrounds are added only to the fully formed center signal. But anatomical and functional observations indicate that surrounds are added before the summation of signals across receptive field subunits that creates the center. Here, we show that this receptive field architecture has an important consequence for spatial contrast encoding in the macaque monkey retina: the surround can control sensitivity to fine spatial structure by changing the way the center integrates visual information over space. The impact of the surround is particularly prominent when center and surround signals are correlated, as they are in natural stimuli. This effect of the surround differs substantially from classic center-surround models and raises the possibility that the surround plays unappreciated roles in shaping ganglion cell sensitivity to natural inputs.
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Affiliation(s)
- Maxwell H Turner
- Department of Physiology and BiophysicsUniversity of WashingtonSeattleUnited States
- Graduate Program in NeuroscienceUniversity of WashingtonSeattleUnited States
| | - Gregory W Schwartz
- Departments of Ophthalmology and Physiology, Feinberg School of MedicineNorthwestern UniversityChicagoUnited States
- Department of Neurobiology, Weinberg College of Arts and SciencesNorthwestern UniversityChicagoUnited States
| | - Fred Rieke
- Department of Physiology and BiophysicsUniversity of WashingtonSeattleUnited States
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24
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Murphy-Baum BL, Taylor WR. Diverse inhibitory and excitatory mechanisms shape temporal tuning in transient OFF α ganglion cells in the rabbit retina. J Physiol 2018; 596:477-495. [PMID: 29222817 DOI: 10.1113/jp275195] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2017] [Accepted: 11/23/2017] [Indexed: 11/08/2022] Open
Abstract
KEY POINTS Neurons combine excitatory and inhibitory signals to perform computations. In the retina, interactions between excitation and inhibition enable neurons to detect specific visual features. We describe how several excitatory and inhibitory mechanisms work together to allow transient OFF α ganglion cells in the rabbit retina to respond selectively to high temporal frequencies and thus detect faster image motion. The weightings of these different mechanisms change with the contrast and spatiotemporal properties of the visual input, and thereby support temporal tuning in α cells over a range of visual conditions. The results help us understand how ganglion cells selectively integrate excitatory and inhibitory signals to extract specific information from the visual input. ABSTRACT The 20 to 30 types of ganglion cell in the mammalian retina represent parallel signalling pathways that convey different information to the brain. α ganglion cells are selective for high temporal frequencies in visual inputs, which makes them particularly sensitive to rapid motion. Although α ganglion cells have been studied in several species, the synaptic basis for their selective temporal tuning remains unclear. Here, we analyse excitatory synaptic inputs to transient OFF α ganglion cells (t-OFF α GCs) in the rabbit retina. We show that convergence of excitatory and inhibitory synaptic inputs within the bipolar cell terminals presynaptic to the t-OFF α GCs shifts the temporal tuning to higher temporal frequencies. GABAergic inhibition suppresses the excitatory input at low frequencies, but potentiates it at high frequencies. Crossover glycinergic inhibition and sodium channel activity in the presynaptic bipolar cells also potentiate high frequency excitatory inputs. We found differences in the spatial and temporal properties, and contrast sensitivities of these mechanisms. These differences in stimulus selectivity allow these mechanisms to generate bandpass temporal tuning of t-OFF α GCs over a range of visual conditions.
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Affiliation(s)
- Benjamin L Murphy-Baum
- Casey Eye Institute, Department of Ophthalmology, Oregon Health and Science University, 3375 SW Terwilliger Boulevard, Portland, OR, 97239, USA
| | - W Rowland Taylor
- Casey Eye Institute, Department of Ophthalmology, Oregon Health and Science University, 3375 SW Terwilliger Boulevard, Portland, OR, 97239, USA
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25
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Khani MH, Gollisch T. Diversity in spatial scope of contrast adaptation among mouse retinal ganglion cells. J Neurophysiol 2017; 118:3024-3043. [PMID: 28904106 PMCID: PMC5712662 DOI: 10.1152/jn.00529.2017] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2017] [Revised: 09/07/2017] [Accepted: 09/07/2017] [Indexed: 02/05/2023] Open
Abstract
Retinal ganglion cells adapt to changes in visual contrast by adjusting their response kinetics and sensitivity. While much work has focused on the time scales of these adaptation processes, less is known about the spatial scale of contrast adaptation. For example, do small, localized contrast changes affect a cell's signal processing across its entire receptive field? Previous investigations have provided conflicting evidence, suggesting that contrast adaptation occurs either locally within subregions of a ganglion cell's receptive field or globally over the receptive field in its entirety. Here, we investigated the spatial extent of contrast adaptation in ganglion cells of the isolated mouse retina through multielectrode-array recordings. We applied visual stimuli so that ganglion cell receptive fields contained regions where the average contrast level changed periodically as well as regions with constant average contrast level. This allowed us to analyze temporal stimulus integration and sensitivity separately for stimulus regions with and without contrast changes. We found that the spatial scope of contrast adaptation depends strongly on cell identity, with some ganglion cells displaying clear local adaptation, whereas others, in particular large transient ganglion cells, adapted globally to contrast changes. Thus, the spatial scope of contrast adaptation in mouse retinal ganglion cells appears to be cell-type specific. This could reflect differences in mechanisms of contrast adaptation and may contribute to the functional diversity of different ganglion cell types.NEW & NOTEWORTHY Understanding whether adaptation of a neuron in a sensory system can occur locally inside the receptive field or whether it always globally affects the entire receptive field is important for understanding how the neuron processes complex sensory stimuli. For mouse retinal ganglion cells, we here show that both local and global contrast adaptation exist and that this diversity in spatial scope can contribute to the functional diversity of retinal ganglion cell types.
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Affiliation(s)
- Mohammad Hossein Khani
- University Medical Center Göttingen, Dept. of Ophthalmology and Bernstein Center for Computational Neuroscience Göttingen, Göttingen, Germany; and.,International Max Planck Research School for Neuroscience, Göttingen, Germany
| | - Tim Gollisch
- University Medical Center Göttingen, Dept. of Ophthalmology and Bernstein Center for Computational Neuroscience Göttingen, Göttingen, Germany; and
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26
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Wang L, Wang Y, Fu WL, Cao LH. Modulation of neuronal dynamic range using two different adaptation mechanisms. Neural Regen Res 2017; 12:447-451. [PMID: 28469660 PMCID: PMC5399723 DOI: 10.4103/1673-5374.202931] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The capability of neurons to discriminate between intensity of external stimulus is measured by its dynamic range. A larger dynamic range indicates a greater probability of neuronal survival. In this study, the potential roles of adaptation mechanisms (ion currents) in modulating neuronal dynamic range were numerically investigated. Based on the adaptive exponential integrate-and-fire model, which includes two different adaptation mechanisms, i.e. subthreshold and suprathreshold (spike-triggered) adaptation, our results reveal that the two adaptation mechanisms exhibit rather different roles in regulating neuronal dynamic range. Specifically, subthreshold adaptation acts as a negative factor that observably decreases the neuronal dynamic range, while suprathreshold adaptation has little influence on the neuronal dynamic range. Moreover, when stochastic noise was introduced into the adaptation mechanisms, the dynamic range was apparently enhanced, regardless of what state the neuron was in, e.g. adaptive or non-adaptive. Our model results suggested that the neuronal dynamic range can be differentially modulated by different adaptation mechanisms. Additionally, noise was a non-ignorable factor, which could effectively modulate the neuronal dynamic range.
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Affiliation(s)
- Lei Wang
- Neuroscience and Intelligent Media Institute, Communication University of China, Beijing, China
| | - Ye Wang
- Neuroscience and Intelligent Media Institute, Communication University of China, Beijing, China
| | - Wen-Long Fu
- Neuroscience and Intelligent Media Institute, Communication University of China, Beijing, China
| | - Li-Hong Cao
- Neuroscience and Intelligent Media Institute, Communication University of China, Beijing, China
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