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For: Seeman SC, Campagnola L, Davoudian PA, Hoggarth A, Hage TA, Bosma-Moody A, Baker CA, Lee JH, Mihalas S, Teeter C, Ko AL, Ojemann JG, Gwinn RP, Silbergeld DL, Cobbs C, Phillips J, Lein E, Murphy G, Koch C, Zeng H, Jarsky T. Sparse recurrent excitatory connectivity in the microcircuit of the adult mouse and human cortex. eLife 2018;7:e37349. [PMID: 30256194 PMCID: PMC6158007 DOI: 10.7554/elife.37349] [Citation(s) in RCA: 106] [Impact Index Per Article: 15.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2018] [Accepted: 08/21/2018] [Indexed: 01/09/2023]  Open
Number Cited by Other Article(s)
1
Yao HK, Mazza F, Prevot TD, Sibille E, Hay E. Spine loss in depression impairs dendritic signal integration in human cortical microcircuit models. iScience 2025;28:112136. [PMID: 40292322 PMCID: PMC12032932 DOI: 10.1016/j.isci.2025.112136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2024] [Revised: 12/23/2024] [Accepted: 02/26/2025] [Indexed: 04/30/2025]  Open
2
Wu S, Huang H, Wang S, Chen G, Zhou C, Yang D. Neural heterogeneity enhances reliable neural information processing: Local sensitivity and globally input-slaved transient dynamics. SCIENCE ADVANCES 2025;11:eadr3903. [PMID: 40173217 PMCID: PMC11963962 DOI: 10.1126/sciadv.adr3903] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/30/2024] [Accepted: 02/26/2025] [Indexed: 04/04/2025]
3
Poirier J, Beninger J, Naud R. Computational protocol for modeling and analyzing synaptic dynamics using SRPlasticity. STAR Protoc 2025;6:103652. [PMID: 40029747 PMCID: PMC11915160 DOI: 10.1016/j.xpro.2025.103652] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2024] [Revised: 12/09/2024] [Accepted: 02/05/2025] [Indexed: 03/21/2025]  Open
4
Becker LA, Baccelli F, Taillefumier T. Subthreshold moment analysis of neuronal populations driven by synchronous synaptic inputs. ARXIV 2025:arXiv:2503.13702v1. [PMID: 40166746 PMCID: PMC11957229] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Subscribe] [Scholar Register] [Indexed: 04/02/2025]
5
Becker LA, Baccelli F, Taillefumier T. Subthreshold variability of neuronal populations driven by synchronous synaptic inputs. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.03.16.643547. [PMID: 40161748 PMCID: PMC11952518 DOI: 10.1101/2025.03.16.643547] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/02/2025]
6
Koren V, Blanco Malerba S, Schwalger T, Panzeri S. Efficient coding in biophysically realistic excitatory-inhibitory spiking networks. eLife 2025;13:RP99545. [PMID: 40053385 PMCID: PMC11888603 DOI: 10.7554/elife.99545] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/09/2025]  Open
7
Liu B, White AJ, Lo CC. Augmenting flexibility: mutual inhibition between inhibitory neurons expands functional diversity. iScience 2025;28:111718. [PMID: 39898045 PMCID: PMC11787539 DOI: 10.1016/j.isci.2024.111718] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2024] [Revised: 11/06/2024] [Accepted: 12/27/2024] [Indexed: 02/04/2025]  Open
8
Saxena R, McNaughton BL. Bridging Neuroscience and AI: Environmental Enrichment as a model for forward knowledge transfer in continual learning. ARXIV 2025:arXiv:2405.07295v3. [PMID: 38947919 PMCID: PMC11213130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 07/02/2024]
9
Watson JF, Vargas-Barroso V, Morse-Mora RJ, Navas-Olive A, Tavakoli MR, Danzl JG, Tomschik M, Rössler K, Jonas P. Human hippocampal CA3 uses specific functional connectivity rules for efficient associative memory. Cell 2025;188:501-514.e18. [PMID: 39667938 DOI: 10.1016/j.cell.2024.11.022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Revised: 10/02/2024] [Accepted: 11/14/2024] [Indexed: 12/14/2024]
10
Koren V, Malerba SB, Schwalger T, Panzeri S. Efficient coding in biophysically realistic excitatory-inhibitory spiking networks. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2024.04.24.590955. [PMID: 38712237 PMCID: PMC11071478 DOI: 10.1101/2024.04.24.590955] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 05/08/2024]
11
Yang Z, Teaney NA, Buttermore ED, Sahin M, Afshar-Saber W. Harnessing the potential of human induced pluripotent stem cells, functional assays and machine learning for neurodevelopmental disorders. Front Neurosci 2025;18:1524577. [PMID: 39844857 PMCID: PMC11750789 DOI: 10.3389/fnins.2024.1524577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2024] [Accepted: 12/19/2024] [Indexed: 01/24/2025]  Open
12
Chou CY, Wong HH, Guo C, Boukoulou KE, Huang C, Jannat J, Klimenko T, Li VY, Liang TA, Wu VC, Sjöström PJ. Principles of visual cortex excitatory microcircuit organization. Innovation (N Y) 2025;6:100735. [PMID: 39872485 PMCID: PMC11763898 DOI: 10.1016/j.xinn.2024.100735] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2023] [Accepted: 11/13/2024] [Indexed: 01/30/2025]  Open
13
Guet-McCreight A, Mazza F, Prevot TD, Sibille E, Hay E. Therapeutic dose prediction of α5-GABA receptor modulation from simulated EEG of depression severity. PLoS Comput Biol 2024;20:e1012693. [PMID: 39729407 DOI: 10.1371/journal.pcbi.1012693] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Accepted: 12/03/2024] [Indexed: 12/29/2024]  Open
14
Zarei Eskikand P, Soto-Breceda A, Cook MJ, Burkitt AN, Grayden DB. Neural dynamics and seizure correlations: Insights from neural mass models in a Tetanus Toxin rat model of epilepsy. Neural Netw 2024;180:106746. [PMID: 39357176 DOI: 10.1016/j.neunet.2024.106746] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Revised: 06/19/2024] [Accepted: 09/15/2024] [Indexed: 10/04/2024]
15
Dura-Bernal S, Herrera B, Lupascu C, Marsh BM, Gandolfi D, Marasco A, Neymotin S, Romani A, Solinas S, Bazhenov M, Hay E, Migliore M, Reinmann M, Arkhipov A. Large-Scale Mechanistic Models of Brain Circuits with Biophysically and Morphologically Detailed Neurons. J Neurosci 2024;44:e1236242024. [PMID: 39358017 PMCID: PMC11450527 DOI: 10.1523/jneurosci.1236-24.2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Revised: 07/09/2024] [Accepted: 07/31/2024] [Indexed: 10/04/2024]  Open
16
Giannakakis E, Vinogradov O, Buendía V, Levina A. Structural influences on synaptic plasticity: The role of presynaptic connectivity in the emergence of E/I co-tuning. PLoS Comput Biol 2024;20:e1012510. [PMID: 39480889 PMCID: PMC11556753 DOI: 10.1371/journal.pcbi.1012510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 11/12/2024] [Accepted: 09/25/2024] [Indexed: 11/02/2024]  Open
17
Ito S, Piet A, Bennett C, Durand S, Belski H, Garrett M, Olsen SR, Arkhipov A. Coordinated changes in a cortical circuit sculpt effects of novelty on neural dynamics. Cell Rep 2024;43:114763. [PMID: 39288028 PMCID: PMC11563561 DOI: 10.1016/j.celrep.2024.114763] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2023] [Revised: 06/03/2024] [Accepted: 08/29/2024] [Indexed: 09/19/2024]  Open
18
Yang D, Qi G, Ort J, Witzig V, Bak A, Delev D, Koch H, Feldmeyer D. Modulation of large rhythmic depolarizations in human large basket cells by norepinephrine and acetylcholine. Commun Biol 2024;7:885. [PMID: 39033173 PMCID: PMC11271271 DOI: 10.1038/s42003-024-06546-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2024] [Accepted: 07/03/2024] [Indexed: 07/23/2024]  Open
19
Eskikand PZ, Cook MJ, Burkitt AN, Grayden DB. Reduced Synaptic Heterogeneity in a Tetanus Toxin Model of Epilepsy: Insights from Computational Modeling. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2024;2024:1-4. [PMID: 40040052 DOI: 10.1109/embc53108.2024.10782071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/06/2025]
20
Mahon S. Variation and convergence in the morpho-functional properties of the mammalian neocortex. Front Syst Neurosci 2024;18:1413780. [PMID: 38966330 PMCID: PMC11222651 DOI: 10.3389/fnsys.2024.1413780] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2024] [Accepted: 06/03/2024] [Indexed: 07/06/2024]  Open
21
Peng Y, Bjelde A, Aceituno PV, Mittermaier FX, Planert H, Grosser S, Onken J, Faust K, Kalbhenn T, Simon M, Radbruch H, Fidzinski P, Schmitz D, Alle H, Holtkamp M, Vida I, Grewe BF, Geiger JRP. Directed and acyclic synaptic connectivity in the human layer 2-3 cortical microcircuit. Science 2024;384:338-343. [PMID: 38635709 DOI: 10.1126/science.adg8828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Accepted: 03/12/2024] [Indexed: 04/20/2024]
22
Shen Y, Shao M, Hao ZZ, Huang M, Xu N, Liu S. Multimodal Nature of the Single-cell Primate Brain Atlas: Morphology, Transcriptome, Electrophysiology, and Connectivity. Neurosci Bull 2024;40:517-532. [PMID: 38194157 PMCID: PMC11003949 DOI: 10.1007/s12264-023-01160-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Accepted: 09/23/2023] [Indexed: 01/10/2024]  Open
23
Lagzi F, Fairhall AL. Emergence of co-tuning in inhibitory neurons as a network phenomenon mediated by randomness, correlations, and homeostatic plasticity. SCIENCE ADVANCES 2024;10:eadi4350. [PMID: 38507489 DOI: 10.1126/sciadv.adi4350] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Accepted: 02/15/2024] [Indexed: 03/22/2024]
24
Beninger J, Rossbroich J, Tóth K, Naud R. Functional subtypes of synaptic dynamics in mouse and human. Cell Rep 2024;43:113785. [PMID: 38363673 DOI: 10.1016/j.celrep.2024.113785] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 12/08/2023] [Accepted: 01/27/2024] [Indexed: 02/18/2024]  Open
25
Guet-McCreight A, Chameh HM, Mazza F, Prevot TD, Valiante TA, Sibille E, Hay E. In-silico testing of new pharmacology for restoring inhibition and human cortical function in depression. Commun Biol 2024;7:225. [PMID: 38396202 PMCID: PMC10891083 DOI: 10.1038/s42003-024-05907-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Accepted: 02/09/2024] [Indexed: 02/25/2024]  Open
26
Becker LA, Li B, Priebe NJ, Seidemann E, Taillefumier T. Exact Analysis of the Subthreshold Variability for Conductance-Based Neuronal Models with Synchronous Synaptic Inputs. PHYSICAL REVIEW. X 2024;14:011021. [PMID: 38911939 PMCID: PMC11194039 DOI: 10.1103/physrevx.14.011021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/25/2024]
27
Becker LA, Li B, Priebe NJ, Seidemann E, Taillefumier T. Exact analysis of the subthreshold variability for conductance-based neuronal models with synchronous synaptic inputs. ARXIV 2023:arXiv:2304.09280v3. [PMID: 37131877 PMCID: PMC10153295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
28
Suzuki M, Pennartz CMA, Aru J. How deep is the brain? The shallow brain hypothesis. Nat Rev Neurosci 2023;24:778-791. [PMID: 37891398 DOI: 10.1038/s41583-023-00756-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/25/2023] [Indexed: 10/29/2023]
29
Ito S, Piet A, Bennett C, Durand S, Belski H, Garrett M, Olsen SR, Arkhipov A. Coordinated changes in a cortical circuit sculpt effects of novelty on neural dynamics. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.10.21.563440. [PMID: 37961331 PMCID: PMC10634721 DOI: 10.1101/2023.10.21.563440] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2023]
30
Wilbers R, Galakhova AA, Driessens SL, Heistek TS, Metodieva VD, Hagemann J, Heyer DB, Mertens EJ, Deng S, Idema S, de Witt Hamer PC, Noske DP, van Schie P, Kommers I, Luan G, Li T, Shu Y, de Kock CP, Mansvelder HD, Goriounova NA. Structural and functional specializations of human fast-spiking neurons support fast cortical signaling. SCIENCE ADVANCES 2023;9:eadf0708. [PMID: 37824618 PMCID: PMC10569701 DOI: 10.1126/sciadv.adf0708] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Accepted: 05/17/2023] [Indexed: 10/14/2023]
31
Navarro P, Oweiss K. Compressive sensing of functional connectivity maps from patterned optogenetic stimulation of neuronal ensembles. PATTERNS (NEW YORK, N.Y.) 2023;4:100845. [PMID: 37876895 PMCID: PMC10591201 DOI: 10.1016/j.patter.2023.100845] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/26/2022] [Revised: 04/04/2023] [Accepted: 08/25/2023] [Indexed: 10/26/2023]
32
Williams N, Ojanperä A, Siebenhühner F, Toselli B, Palva S, Arnulfo G, Kaski S, Palva JM. The influence of inter-regional delays in generating large-scale brain networks of phase synchronization. Neuroimage 2023;279:120318. [PMID: 37572765 DOI: 10.1016/j.neuroimage.2023.120318] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 07/14/2023] [Accepted: 08/10/2023] [Indexed: 08/14/2023]  Open
33
Zdeblick DN, Shea-Brown ET, Witten DM, Buice MA. Modeling functional cell types in spike train data. PLoS Comput Biol 2023;19:e1011509. [PMID: 37824442 PMCID: PMC10569560 DOI: 10.1371/journal.pcbi.1011509] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2023] [Accepted: 09/12/2023] [Indexed: 10/14/2023]  Open
34
Zimin IA, Kazantsev VB, Stasenko SV. Artificial Neural Network Model with Astrocyte-Driven Short-Term Memory. Biomimetics (Basel) 2023;8:422. [PMID: 37754173 PMCID: PMC10526164 DOI: 10.3390/biomimetics8050422] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 08/10/2023] [Accepted: 09/03/2023] [Indexed: 09/28/2023]  Open
35
Becker LA, Li B, Priebe NJ, Seidemann E, Taillefumier T. Exact analysis of the subthreshold variability for conductance-based neuronal models with synchronous synaptic inputs. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.04.17.536739. [PMID: 37131647 PMCID: PMC10153111 DOI: 10.1101/2023.04.17.536739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
36
de Kock CPJ, Feldmeyer D. Shared and divergent principles of synaptic transmission between cortical excitatory neurons in rodent and human brain. Front Synaptic Neurosci 2023;15:1274383. [PMID: 37731775 PMCID: PMC10508294 DOI: 10.3389/fnsyn.2023.1274383] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Accepted: 08/21/2023] [Indexed: 09/22/2023]  Open
37
Zarei Eskikand P, Soto-Breceda A, Cook MJ, Burkitt AN, Grayden DB. Inhibitory stabilized network behaviour in a balanced neural mass model of a cortical column. Neural Netw 2023;166:296-312. [PMID: 37541162 DOI: 10.1016/j.neunet.2023.07.020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Revised: 06/16/2023] [Accepted: 07/12/2023] [Indexed: 08/06/2023]
38
Bernáez Timón L, Ekelmans P, Kraynyukova N, Rose T, Busse L, Tchumatchenko T. How to incorporate biological insights into network models and why it matters. J Physiol 2023;601:3037-3053. [PMID: 36069408 DOI: 10.1113/jp282755] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Accepted: 08/24/2022] [Indexed: 11/08/2022]  Open
39
Haufler D, Ito S, Koch C, Arkhipov A. Simulations of cortical networks using spatially extended conductance-based neuronal models. J Physiol 2023;601:3123-3139. [PMID: 36567262 PMCID: PMC10290729 DOI: 10.1113/jp284030] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Accepted: 12/19/2022] [Indexed: 12/27/2022]  Open
40
Baek S, Park Y, Paik SB. Species-specific wiring of cortical circuits for small-world networks in the primary visual cortex. PLoS Comput Biol 2023;19:e1011343. [PMID: 37540638 PMCID: PMC10403141 DOI: 10.1371/journal.pcbi.1011343] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Accepted: 07/10/2023] [Indexed: 08/06/2023]  Open
41
Kim MH, Radaelli C, Thomsen ER, Monet D, Chartrand T, Jorstad NL, Mahoney JT, Taormina MJ, Long B, Baker K, Bakken TE, Campagnola L, Casper T, Clark M, Dee N, D'Orazi F, Gamlin C, Kalmbach BE, Kebede S, Lee BR, Ng L, Trinh J, Cobbs C, Gwinn RP, Keene CD, Ko AL, Ojemann JG, Silbergeld DL, Sorensen SA, Berg J, Smith KA, Nicovich PR, Jarsky T, Zeng H, Ting JT, Levi BP, Lein E. Target cell-specific synaptic dynamics of excitatory to inhibitory neuron connections in supragranular layers of human neocortex. eLife 2023;12:e81863. [PMID: 37249212 PMCID: PMC10332811 DOI: 10.7554/elife.81863] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 05/29/2023] [Indexed: 05/31/2023]  Open
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Ekelmans P, Kraynyukovas N, Tchumatchenko T. Targeting operational regimes of interest in recurrent neural networks. PLoS Comput Biol 2023;19:e1011097. [PMID: 37186668 DOI: 10.1371/journal.pcbi.1011097] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Revised: 05/25/2023] [Accepted: 04/11/2023] [Indexed: 05/17/2023]  Open
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Schneider A, Azabou M, McDougall-Vigier L, Parks DF, Ensley S, Bhaskaran-Nair K, Nowakowski T, Dyer EL, Hengen KB. Transcriptomic cell type structures in vivo neuronal activity across multiple timescales. Cell Rep 2023;42:112318. [PMID: 36995938 PMCID: PMC10539488 DOI: 10.1016/j.celrep.2023.112318] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Revised: 02/04/2023] [Accepted: 03/15/2023] [Indexed: 03/30/2023]  Open
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Buchholz MO, Gastone Guilabert A, Ehret B, Schuhknecht GFP. How synaptic strength, short-term plasticity, and input synchrony contribute to neuronal spike output. PLoS Comput Biol 2023;19:e1011046. [PMID: 37068099 PMCID: PMC10153727 DOI: 10.1371/journal.pcbi.1011046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2022] [Revised: 05/02/2023] [Accepted: 03/24/2023] [Indexed: 04/18/2023]  Open
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Urdaneta ME, Kunigk NG, Peñaloza-Aponte JD, Currlin S, Malone IG, Fried SI, Otto KJ. Layer-dependent stability of intracortical recordings and neuronal cell loss. Front Neurosci 2023;17:1096097. [PMID: 37090803 PMCID: PMC10113640 DOI: 10.3389/fnins.2023.1096097] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Accepted: 03/13/2023] [Indexed: 04/08/2023]  Open
46
Printz Y, Patil P, Mahn M, Benjamin A, Litvin A, Levy R, Bringmann M, Yizhar O. Determinants of functional synaptic connectivity among amygdala-projecting prefrontal cortical neurons in male mice. Nat Commun 2023;14:1667. [PMID: 36966143 PMCID: PMC10039875 DOI: 10.1038/s41467-023-37318-x] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Accepted: 03/13/2023] [Indexed: 03/27/2023]  Open
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Hunt S, Leibner Y, Mertens EJ, Barros-Zulaica N, Kanari L, Heistek TS, Karnani MM, Aardse R, Wilbers R, Heyer DB, Goriounova NA, Verhoog MB, Testa-Silva G, Obermayer J, Versluis T, Benavides-Piccione R, de Witt-Hamer P, Idema S, Noske DP, Baayen JC, Lein ES, DeFelipe J, Markram H, Mansvelder HD, Schürmann F, Segev I, de Kock CPJ. Strong and reliable synaptic communication between pyramidal neurons in adult human cerebral cortex. Cereb Cortex 2023;33:2857-2878. [PMID: 35802476 PMCID: PMC10016070 DOI: 10.1093/cercor/bhac246] [Citation(s) in RCA: 33] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Revised: 05/25/2022] [Accepted: 05/26/2022] [Indexed: 12/25/2022]  Open
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Zdeblick DN, Shea-Brown ET, Witten DM, Buice MA. Modeling functional cell types in spike train data. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.02.28.530327. [PMID: 36909648 PMCID: PMC10002678 DOI: 10.1101/2023.02.28.530327] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
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Lin Y, Zhang XJ, Yang J, Li S, Li L, Lv X, Ma J, Shi SH. Developmental neuronal origin regulates neocortical map formation. Cell Rep 2023;42:112170. [PMID: 36842085 DOI: 10.1016/j.celrep.2023.112170] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2022] [Revised: 12/14/2022] [Accepted: 02/10/2023] [Indexed: 02/27/2023]  Open
50
Rollenhagen A, Anstötz M, Zimmermann K, Kasugai Y, Sätzler K, Molnar E, Ferraguti F, Lübke JHR. Layer-specific distribution and expression pattern of AMPA- and NMDA-type glutamate receptors in the barrel field of the adult rat somatosensory cortex: a quantitative electron microscopic analysis. Cereb Cortex 2023;33:2342-2360. [PMID: 35732315 PMCID: PMC9977369 DOI: 10.1093/cercor/bhac212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Revised: 05/05/2022] [Accepted: 05/06/2022] [Indexed: 11/14/2022]  Open
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