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Maculewicz J, Białk-Bielińska A, Kowalska D, Stepnowski P, Stolte S, Beil S, Gajewicz-Skretna A, Dołżonek J. Bioconcentration potential of ionic liquids: New data on membrane partitioning and its comparison with predictions obtained by COSMOmic. Biochim Biophys Acta Biomembr 2024; 1866:184320. [PMID: 38583701 DOI: 10.1016/j.bbamem.2024.184320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 03/19/2024] [Accepted: 04/01/2024] [Indexed: 04/09/2024]
Abstract
Ionic liquids (ILs) have recently gained significant attention in both the scientific community and industry, but there is a limited understanding of the potential risks they might pose to the environment and human health, including their potential to accumulate in organisms. While membrane and storage lipids have been considered as primary sorption phases driving bioaccumulation, in this study we used an in vitro tool known as solid-supported lipid membranes (SSLMs) to investigate the affinity of ILs to membrane lipid - phosphatidylcholine and compare the results with an existing in silico model. Our findings indicate that ILs may have a strong affinity for the lipids that form cell membranes, with the key factor being the length of the cation's side chain. For quaternary ammonium cations, increase in membrane affinity (logMA) was observed from 3.45 ± 0.06 at 10 carbon atoms in chain to 4.79 ± 0.06 at 14 carbon atoms. We also found that the anion can significantly affect the membrane partitioning of the cation, even though the anions themselves tend to have weaker interactions with phospholipids than the cations of ILs. For 1-methyl-3-octylimidazolium cation the presence of tricyanomethanide anion caused increase in logMA to 4.23 ± 0.06. Although some of our data proved to be consistent with predictions made by the COSMOmic model, there are also significant discrepancies. These results suggest that further research is needed to improve our understanding of the mechanisms and structure-activity relationships involved in ILs bioconcentration and to develop more accurate predictive models.
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Affiliation(s)
- Jakub Maculewicz
- Department of Environmental Analysis, Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland
| | - Anna Białk-Bielińska
- Department of Environmental Analysis, Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland
| | - Dorota Kowalska
- Department of Environmental Analysis, Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland
| | - Piotr Stepnowski
- Department of Environmental Analysis, Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland
| | - Stefan Stolte
- Institute of Water Chemistry, TU Dresden, 01062 Dresden, Germany
| | - Stephan Beil
- Institute of Water Chemistry, TU Dresden, 01062 Dresden, Germany
| | - Agnieszka Gajewicz-Skretna
- Laboratory of Environmental Chemoinformatics, Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland
| | - Joanna Dołżonek
- Department of Environmental Analysis, Faculty of Chemistry, University of Gdańsk, Wita Stwosza 63, 80-308 Gdańsk, Poland.
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Goh MWS, Tozawa Y, Tero R. Assembly of Cell-Free Synthesized Ion Channel Molecules in Artificial Lipid Bilayer Observed by Atomic Force Microscopy. Membranes (Basel) 2023; 13:854. [PMID: 37999340 PMCID: PMC10673230 DOI: 10.3390/membranes13110854] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 10/20/2023] [Accepted: 10/23/2023] [Indexed: 11/25/2023]
Abstract
Artificial lipid bilayer systems, such as vesicles, black membranes, and supported lipid bilayers (SLBs), are valuable platforms for studying ion channels at the molecular level. The reconstitution of the ion channels in an active form is a crucial process in studies using artificial lipid bilayer systems. In this study, we investigated the assembly of the human ether-a-go-go-related gene (hERG) channel prepared in a cell-free synthesis system. AFM topographies revealed the presence of protrusions with a uniform size in the entire SLB that was prepared with the proteoliposomes (PLs) incorporating the cell-free-synthesized hERG channel. We attributed the protrusions to hERG channel monomers, taking into consideration the AFM tip size, and identified assembled structures of the monomer that exhibited dimeric, trimeric, and tetrameric-like arrangements. We observed molecular images of the functional hERG channel reconstituted in a lipid bilayer membrane using AFM and quantitatively evaluated the association state of the cell-free synthesized hERG channel.
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Affiliation(s)
- Melvin Wei Shern Goh
- Department of Applied Chemistry and Life Science, Toyohashi University of Technology, Toyohashi 441-8580, Japan
| | - Yuzuru Tozawa
- Graduate School of Science and Engineering, Saitama University, Saitama 338-8570, Japan;
| | - Ryugo Tero
- Department of Applied Chemistry and Life Science, Toyohashi University of Technology, Toyohashi 441-8580, Japan
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Yasuhara K, Morigaki K. Creation of supramolecular biomembrane by the bottom-up self-assembly: Where material science meets biophysics. Biophys Physicobiol 2022; 19:e190043. [PMID: 36567734 PMCID: PMC9751256 DOI: 10.2142/biophysico.bppb-v19.0043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Accepted: 10/18/2022] [Indexed: 11/08/2022] Open
Affiliation(s)
- Kazuma Yasuhara
- Division of Materials Science, Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan,Center for Digital Green-innovation, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan
| | - Kenichi Morigaki
- Biosignal Research Center, Kobe University, Kobe, Hyogo 657-8501, Japan,Graduate School of Agricultural Science, Kobe University, Kobe, Hyogo 657-8501, Japan
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Murata M, Matsumori N, Kinoshita M, London E. Molecular substructure of the liquid-ordered phase formed by sphingomyelin and cholesterol: sphingomyelin clusters forming nano-subdomains are a characteristic feature. Biophys Rev 2022; 14:655-678. [PMID: 35791389 DOI: 10.1007/s12551-022-00967-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Accepted: 05/26/2022] [Indexed: 11/29/2022] Open
Abstract
As a model of lipid rafts, the liquid-ordered (Lo) phase formed by sphingomyelin (SM) and cholesterol (Cho) in bilayer membranes has long attracted the attention of biophysics researchers. New approaches and methodologies have led to a better understanding of the molecular basis of the Lo domain structure. This review summarizes studies on model membrane systems consisting of SM/unsaturated phospholipid/Cho implying that the Lo phase contains SM-based nanodomains (or nano-subdomains). Some of the Lo phase properties may be attributed to these nanodomains. Several studies suggest that the nanodomains contain clustered SM molecules packed densely to form gel-phase-like subdomains of single-digit nanometer size at physiological temperatures. Cho and unsaturated lipids located in the Lo phase are likely to be concentrated at the boundaries between the subdomains. These subdomains are not readily detected in the Lo phase formed by saturated phosphatidylcholine (PC) molecules, suggesting that they are strongly stabilized by homophilic interactions specific to SM, e.g., between SM amide groups. This model for the Lo phase is supported by experiments using dihydro-SM, which is thought to have stronger homophilic interactions than SM, as well as by studies using the enantiomer of SM having opposite stereochemistry to SM at the 2 and 3 positions and by some molecular dynamics (MD) simulations of lipid bilayers containing Lo-lipids. Nanosized gel subdomains seem to play an important role in controlling membrane organization and function in biological membranes.
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Affiliation(s)
- Michio Murata
- Department of Chemistry, Graduate School of Science, Osaka University, Osaka, 560-0043 Japan.,ERATO, Lipid Active Structure Project, Japan Science and Technology Agency, Graduate School of Science, Osaka University, Osaka, 560-0043 Japan
| | - Nobuaki Matsumori
- Department of Chemistry, Faculty of Science, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka, 819-0395 Japan
| | - Masanao Kinoshita
- ERATO, Lipid Active Structure Project, Japan Science and Technology Agency, Graduate School of Science, Osaka University, Osaka, 560-0043 Japan.,Department of Chemistry, Faculty of Science, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka, 819-0395 Japan
| | - Erwin London
- Department of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY 11794-5215 USA
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de Santis A, Scoppola E, Ottaviani MF, Koutsioubas A, Barnsley LC, Paduano L, D’Errico G, Russo Krauss I. Order vs. Disorder: Cholesterol and Omega-3 Phospholipids Determine Biomembrane Organization. Int J Mol Sci 2022; 23:ijms23105322. [PMID: 35628128 PMCID: PMC9140907 DOI: 10.3390/ijms23105322] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Revised: 05/06/2022] [Accepted: 05/07/2022] [Indexed: 02/06/2023] Open
Abstract
Lipid structural diversity strongly affects biomembrane chemico-physical and structural properties in addition to membrane-associated events. At high concentrations, cholesterol increases membrane order and rigidity, while polyunsaturated lipids are reported to increase disorder and flexibility. How these different tendencies balance in composite bilayers is still controversial. In this study, electron paramagnetic resonance spectroscopy, small angle neutron scattering, and neutron reflectivity were used to investigate the structural properties of cholesterol-containing lipid bilayers in the fluid state with increasing amounts of polyunsaturated omega-3 lipids. Either the hybrid 1-stearoyl-2-docosahexaenoyl-sn-glycero-3-phosphocholine or the symmetric 1,2-docosahexaenoyl-sn-glycero-3-phosphocholine were added to the mixture of the naturally abundant 1-palmitoyl-2-oleyl-sn-glycero-3-phosphocholine and cholesterol. Our results indicate that the hybrid and the symmetric omega-3 phospholipids affect the microscopic organization of lipid bilayers differently. Cholesterol does not segregate from polyunsaturated phospholipids and, through interactions with them, is able to suppress the formation of non-lamellar structures induced by the symmetric polyunsaturated lipid. However, this order/disorder balance leads to a bilayer whose structural organization cannot be ascribed to either a liquid ordered or to a canonical liquid disordered phase, in that it displays a very loose packing of the intermediate segments of lipid chains.
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Affiliation(s)
- Augusta de Santis
- Department of Chemical Sciences, University of Naples Federico II, I-80126 Naples, Italy; (A.d.S.); (L.P.)
- CSGI (Consorzio per lo Sviluppo dei Sistemi a Grande Interfase), I-50019 Florence, Italy
| | - Ernesto Scoppola
- Max Planck Institut für Kolloid und Grenzflächenforschung, 14476 Potsdam, Germany;
| | | | - Alexandros Koutsioubas
- Jülich Centre for Neutron Science (JCNS) at Heinz Maier-Leibnitz Zentrum (MLZ), 85748 Garching, Germany; (A.K.); (L.C.B.)
| | - Lester C. Barnsley
- Jülich Centre for Neutron Science (JCNS) at Heinz Maier-Leibnitz Zentrum (MLZ), 85748 Garching, Germany; (A.K.); (L.C.B.)
- Australian Synchrotron, ANSTO, Clayton 3168, Australia
| | - Luigi Paduano
- Department of Chemical Sciences, University of Naples Federico II, I-80126 Naples, Italy; (A.d.S.); (L.P.)
- CSGI (Consorzio per lo Sviluppo dei Sistemi a Grande Interfase), I-50019 Florence, Italy
| | - Gerardino D’Errico
- Department of Chemical Sciences, University of Naples Federico II, I-80126 Naples, Italy; (A.d.S.); (L.P.)
- CSGI (Consorzio per lo Sviluppo dei Sistemi a Grande Interfase), I-50019 Florence, Italy
- Correspondence: (G.D.); (I.R.K.)
| | - Irene Russo Krauss
- Department of Chemical Sciences, University of Naples Federico II, I-80126 Naples, Italy; (A.d.S.); (L.P.)
- CSGI (Consorzio per lo Sviluppo dei Sistemi a Grande Interfase), I-50019 Florence, Italy
- Correspondence: (G.D.); (I.R.K.)
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Goh MWS, Tero R. Capability of Polyunsaturated Phosphatidylcholine for Non-raft Domain Formation in Cholesterol-containing Lipid Bilayers. e-J Surf Sci Nanotechnol 2022; 20:90-7. [DOI: 10.1380/ejssnt.2022-015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Goh MWS, Tero R. Non-raft submicron domain formation in cholesterol-containing lipid bilayers induced by polyunsaturated phosphatidylethanolamine. Colloids Surf B Biointerfaces 2021; 210:112235. [PMID: 34891064 DOI: 10.1016/j.colsurfb.2021.112235] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Revised: 11/08/2021] [Accepted: 11/16/2021] [Indexed: 12/13/2022]
Abstract
Domain formation in "HLC" ternary lipid bilayers, comprising a high transition temperature (High-Tm) lipid, a Low-Tm lipid, and cholesterol (Chol), has been extensively studied as raft-resembling systems. Recently, we reported the formation of submicron domains in an "LLC" lipid bilayer, encompassing Low-Tm phosphatidylethanolamine (PE), Low-Tm phosphatidylcholine (PC), and Chol. We hypothesized that the formation of this unique domain is driven by polyunsaturated PE. In this study, we explored the effects of the degree of PE unsaturation and the double bond distribution at the sn-position on the mechanism of formation and the composition of submicron domains. Supported lipid bilayers (SLBs), comprising PE with various degrees of unsaturation, monounsaturated PC (POPC), and Chol, were investigated using fluorescence microscopy, atomic force microscopy, and the force-distance curve measurement. The area fraction of submicron domains in PE+POPC+Chol-SLB increased with the PE concentration and degree of unsaturation of the PE acyl chain. The results indicated that the submicron domains were enriched with polyunsaturated PE and were in the liquid-disordered-like state, whereas their surrounding regions were in the liquid-ordered-like state. Segregation of polyunsaturated PE from the Chol-containing region generated submicron domains in the LLC lipid bilayer. We propose a mechanism for the formation of these submicron domains based on molecular interactions involving the hydrophobic and hydrophilic parts of the bilayer membrane.
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