1
|
Masia F, Langbein W, Fischer S, Krisponeit JO, Falta J. Low-energy electron microscopy intensity-voltage data - Factorization, sparse sampling and classification. J Microsc 2023; 289:91-106. [PMID: 36288376 PMCID: PMC10108219 DOI: 10.1111/jmi.13155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Revised: 09/15/2022] [Accepted: 10/17/2022] [Indexed: 01/14/2023]
Abstract
Low-energy electron microscopy (LEEM) taken as intensity-voltage (I-V) curves provides hyperspectral images of surfaces, which can be used to identify the surface type, but are difficult to analyse. Here, we demonstrate the use of an algorithm for factorizing the data into spectra and concentrations of characteristic components (FSC3 ) for identifying distinct physical surface phases. Importantly, FSC3 is an unsupervised and fast algorithm. As example data we use experiments on the growth of praseodymium oxide or ruthenium oxide on ruthenium single crystal substrates, both featuring a complex distribution of coexisting surface components, varying in both chemical composition and crystallographic structure. With the factorization result a sparse sampling method is demonstrated, reducing the measurement time by 1-2 orders of magnitude, relevant for dynamic surface studies. The FSC3 concentrations are providing the features for a support vector machine-based supervised classification of the surface types. Here, specific surface regions which have been identified structurally, via their diffraction pattern, as well as chemically by complementary spectro-microscopic techniques, are used as training sets. A reliable classification is demonstrated on both example LEEM I-V data sets.
Collapse
Affiliation(s)
- Francesco Masia
- School of Biosciences, Cardiff University, Cardiff, UK.,School of Physics and Astronomy, Cardiff University, Cardiff, UK
| | | | - Simon Fischer
- Institute of Solid State Physics, University of Bremen, Bremen, Germany
| | - Jon-Olaf Krisponeit
- Institute of Solid State Physics, University of Bremen, Bremen, Germany.,MAPEX Center for Materials and Processes, University of Bremen, Bremen, Germany
| | - Jens Falta
- Institute of Solid State Physics, University of Bremen, Bremen, Germany.,MAPEX Center for Materials and Processes, University of Bremen, Bremen, Germany
| |
Collapse
|
2
|
Porkovich A, Ziadi Z, Kumar P, Kioseoglou J, Jian N, Weng L, Steinhauer S, Vernieres J, Grammatikopoulos P, Sowwan M. In Situ Observation of Metal to Metal Oxide Progression: A Study of Charge Transfer Phenomenon at Ru-CuO Interfaces. ACS Nano 2019; 13:12425-12437. [PMID: 31577415 DOI: 10.1021/acsnano.9b06224] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Surface charge and charge transfer between nanoclusters and oxide supports are of paramount importance to catalysis, surface plasmonics, and optical energy harvesting areas. At present, high-energy X-rays and theoretical investigation are always required to determine the chemical state changes in the nanoclusters and the oxide supports, as well as the underlying transfer charge between them. This work presents the idea of using chrono-conductometric measurements to determine the chemical states of the Ru nanoclusters on CuO supports. Both icosahedral and single-crystal hexagonal close-packed Ru nanoclusters were deposited through gas-phase synthesis. To study the charge transfer phenomenon at the interface, a bias was applied to cupric oxide nanowires with metallic nanocluster decoration. In situ conductometric measurements were performed to observe the evolution of Ru into RuOx under heating conditions. Structural elucidation techniques such as transmission electron microscopy, X-ray photoelectron spectroscopy, and Kelvin probe force microscopy were employed to study the corresponding progression of structure, chemical ordering, and surface potential, respectively, as Ru(0) was oxidized to RuOx on the supporting oxide surface. Experimental and theoretical investigation of charge transfer between the nanocluster and oxide support highlighted the importance of metallic character and structure of the nanoclusters on the interfacial charge transfer, thus allowing the investigation of surface charge behavior on oxide-supported catalysts, in situ, during catalytic operation via conductometric measurements.
Collapse
Affiliation(s)
- Alexander Porkovich
- Nanoparticles by Design Unit , Okinawa Institute of Science and Technology (OIST) Graduate University , 1919-1 Tancha, Onna-Son , Okinawa 904-0495 , Japan
| | - Zakaria Ziadi
- Nanoparticles by Design Unit , Okinawa Institute of Science and Technology (OIST) Graduate University , 1919-1 Tancha, Onna-Son , Okinawa 904-0495 , Japan
| | - Pawan Kumar
- Nanoparticles by Design Unit , Okinawa Institute of Science and Technology (OIST) Graduate University , 1919-1 Tancha, Onna-Son , Okinawa 904-0495 , Japan
| | - Joseph Kioseoglou
- Department of Physics , Aristotle University of Thessaloniki , GR-54124 Thessaloniki , Greece
| | - Nan Jian
- Nanoparticles by Design Unit , Okinawa Institute of Science and Technology (OIST) Graduate University , 1919-1 Tancha, Onna-Son , Okinawa 904-0495 , Japan
| | - Lin Weng
- Nanoparticles by Design Unit , Okinawa Institute of Science and Technology (OIST) Graduate University , 1919-1 Tancha, Onna-Son , Okinawa 904-0495 , Japan
| | - Stephan Steinhauer
- Nanoparticles by Design Unit , Okinawa Institute of Science and Technology (OIST) Graduate University , 1919-1 Tancha, Onna-Son , Okinawa 904-0495 , Japan
| | - Jerome Vernieres
- Nanoparticles by Design Unit , Okinawa Institute of Science and Technology (OIST) Graduate University , 1919-1 Tancha, Onna-Son , Okinawa 904-0495 , Japan
| | - Panagiotis Grammatikopoulos
- Nanoparticles by Design Unit , Okinawa Institute of Science and Technology (OIST) Graduate University , 1919-1 Tancha, Onna-Son , Okinawa 904-0495 , Japan
| | - Mukhles Sowwan
- Nanoparticles by Design Unit , Okinawa Institute of Science and Technology (OIST) Graduate University , 1919-1 Tancha, Onna-Son , Okinawa 904-0495 , Japan
| |
Collapse
|
3
|
Zhu L, Wei Z, Shi G, Shang B, Li M, Wan W, Tang WX. Coverage-driven phase transition of copper silicide monolayer on Si (111). Ultramicroscopy 2019; 200:39-42. [PMID: 30822615 DOI: 10.1016/j.ultramic.2019.02.019] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2018] [Accepted: 02/18/2019] [Indexed: 11/22/2022]
Abstract
The characterization and control of atomic substitution process is crucial in fabricating high-quality two-dimensional layered compound materials and tuning their physical properties. With intensity-voltage low energy electron microscopy (IV-LEEM), we found that the concentration of copper in the topmost copper silicide monolayer on Si (111) substrates varies gradually from 1.7 to 1.0 ML while preserving it's unique '5 × 5' incommensurate phase in a transition region as large as 1000 nm. This gradual variation of the copper concentration is due to the incomplete substitution of the Si with Cu, as revealed by atomic-resolved scanning tunneling microscopy with a tip that nicely resolved the '5 × 5' periodicity. Our experiments indicate that besides the widely-accepted phase of Cu2Si with both substitutional and interstitial Cu atoms, another type of precursor copper silicide CuSi3 with only interstitial Cu atoms also plays important roles in the substitutional diffusion and reaction processes during the formation of the topmost copper silicide monolayer. This precursor phase might exist in the growth of other two-dimensional layered materials with potential applications in integrated optoelectronics, spintronics or low dissipative devices.
Collapse
|
4
|
Abstract
Lattice based kinetic Monte Carlo (KMC) is often used for simulating the dynamics of systems at a supramolecular scale, based on molecular scale transitions. A common challenge in KMC simulations is rapid 'back-and-forth' reactions, which dominate the events executed during simulations and inhibit the ability for simulations to reach longer time scales. Such processes are fast frivolous processes (FFPs) and are one manifestation of a phenomenon referred to as KMC-stiffness. Here, an algorithm for staggered quasi-equilibrium rank-based throttling geared towards transient kinetics (SQERT-T) is presented. Within the SQERT-T methodology, a pace-restrictor reaction and an FFP floor are utilized along with throttling of the process transition rate constants to accelerate the KMC simulations while still retaining sufficient time resolution for sampling of the data. KMC simulations were performed for CO oxidation over RuO2(1 1 0) and over RuO2(1 1 1), and the results were compared to experimental data obtained using RuO2 powders. The experiments and simulations were for transient conditions: the system was subjected to a temperature program which included temperatures in the range of 363 to 453 K. The timescales that were achieved during the KMC simulations in this study would not have been accessible without KMC acceleration, and were enabled by the use of SQERT-T.
Collapse
Affiliation(s)
- Aditya Savara
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States of America
| | | |
Collapse
|
5
|
Gregoratti L, Al-hada M, Amati M, Brescia R, Roccella D, Sezen H, Zeller P. Spatially Resolved Photoelectron Spectroscopy from Ultra-high Vacuum to Near Ambient Pressure Sample Environments. Top Catal 2018; 61:1274-82. [DOI: 10.1007/s11244-018-0982-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
|
6
|
Sutton JE, Lorenzi JM, Krogel JT, Xiong Q, Pannala S, Matera S, Savara A. Electrons to Reactors Multiscale Modeling: Catalytic CO Oxidation over RuO2. ACS Catal 2018. [DOI: 10.1021/acscatal.8b00713] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jonathan E. Sutton
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Juan M. Lorenzi
- Theoretical Chemistry and Catalysis Research Center, Technische Universität München, 85748 Garching, Germany
| | - Jaron T. Krogel
- Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Qingang Xiong
- Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Sreekanth Pannala
- Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Sebastian Matera
- Fachbereich Mathematik & Informatik, Free University, 14195 Berlin, Germany
| | - Aditya Savara
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| |
Collapse
|
7
|
Flege JI, Höcker J, Kaemena B, Menteş TO, Sala A, Locatelli A, Gangopadhyay S, Sadowski JT, Senanayake SD, Falta J. Growth and characterization of epitaxially stabilized ceria(001) nanostructures on Ru(0001). Nanoscale 2016; 8:10849-10856. [PMID: 27165117 DOI: 10.1039/c6nr02393b] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
We have studied (001) surface terminated cerium oxide nanoparticles grown on a ruthenium substrate using physical vapor deposition. Their morphology, shape, crystal structure, and chemical state are determined by low-energy electron microscopy and micro-diffraction, scanning probe microscopy, and synchrotron-based X-ray absorption spectroscopy. Square islands are identified as CeO2 nanocrystals exhibiting a (001) oriented top facet of varying size; they have a height of about 7 to 10 nm and a side length between about 50 and 500 nm, and are terminated with a p(2 × 2) surface reconstruction. Micro-illumination electron diffraction reveals the existence of a coincidence lattice at the interface to the ruthenium substrate. The orientation of the side facets of the rod-like particles is identified as (111); the square particles are most likely of cuboidal shape, exhibiting (100) oriented side facets. The square and needle-like islands are predominantly found at step bunches and may be grown exclusively at temperatures exceeding 1000 °C.
Collapse
Affiliation(s)
- Jan Ingo Flege
- Institute of Solid State Physics, University of Bremen, Otto-Hahn-Allee 1, 28359 Bremen, Germany. and MAPEX Center for Materials and Processes, University of Bremen, 28359 Bremen, Germany
| | - Jan Höcker
- Institute of Solid State Physics, University of Bremen, Otto-Hahn-Allee 1, 28359 Bremen, Germany.
| | - Björn Kaemena
- Institute of Solid State Physics, University of Bremen, Otto-Hahn-Allee 1, 28359 Bremen, Germany.
| | - T Onur Menteş
- Elettra-Sincrotrone Trieste S.C.p.A., S.S. 14 - km 163, 5 in AREA Science Park, 34149 Trieste, Italy
| | - Alessandro Sala
- Elettra-Sincrotrone Trieste S.C.p.A., S.S. 14 - km 163, 5 in AREA Science Park, 34149 Trieste, Italy
| | - Andrea Locatelli
- Elettra-Sincrotrone Trieste S.C.p.A., S.S. 14 - km 163, 5 in AREA Science Park, 34149 Trieste, Italy
| | | | - Jerzy T Sadowski
- Center for Functional Nanomaterials, Brookhaven National Laboratory, Upton, NY 11973, USA
| | - Sanjaya D Senanayake
- Chemistry Department, Brookhaven National Laboratory, Upton, New York 11973, USA
| | - Jens Falta
- Institute of Solid State Physics, University of Bremen, Otto-Hahn-Allee 1, 28359 Bremen, Germany. and MAPEX Center for Materials and Processes, University of Bremen, 28359 Bremen, Germany
| |
Collapse
|
8
|
Flege JI, Lachnitt J, Mazur D, Sutter P, Falta J. Role of RuO2(100) in surface oxidation and CO oxidation catalysis on Ru(0001). Phys Chem Chem Phys 2016; 18:213-9. [DOI: 10.1039/c5cp05807d] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Oxidation of Ru(0001) induces the simultaneous formation of RuO2(100) and RuO2(110) and a structure-sensitive oxygen spillover during CO oxidation.
Collapse
Affiliation(s)
- Jan Ingo Flege
- Institute of Solid State Physics
- University of Bremen
- 28359 Bremen
- Germany
| | - Jan Lachnitt
- Faculty of Mathematics and Physics
- Department of Surface and Plasma Science
- Charles University in Prague
- 18000 Prague 8
- Czech Republic
| | - Daniel Mazur
- Faculty of Mathematics and Physics
- Department of Surface and Plasma Science
- Charles University in Prague
- 18000 Prague 8
- Czech Republic
| | - Peter Sutter
- Center for Functional Nanomaterials
- Brookhaven National Laboratory
- Upton
- USA
| | - Jens Falta
- Institute of Solid State Physics
- University of Bremen
- 28359 Bremen
- Germany
- MAPEX Center for Materials and Processes
| |
Collapse
|