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Okada S, Richirt J, Tame A, Nomaki H. Rapid Freezing and Cryo-SEM-EDS Imaging of Foraminifera (Unicellular Eukaryotes) Using a Conductive Viscous Cryogenic Glue. Microsc Microanal 2024; 30:359-367. [PMID: 38578298 DOI: 10.1093/mam/ozae026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2023] [Revised: 02/13/2024] [Accepted: 03/05/2024] [Indexed: 04/06/2024]
Abstract
Spatial distribution of water-soluble molecules and ions in living organisms is still challenging to assess. Energy-dispersive X-ray spectroscopy (EDS) via cryogenic scanning electron microscopy (cryo-SEM) is one of the promising methods to study them without loss of dissolved contents. High-resolution cryo-SEM-EDS has challenges in sample preparation, including cross-section exposure and sample drift/charging due to insulative surrounding water. The former becomes problematic for large and inseparable organisms, such as benthic foraminifera, a unicellular eukaryote playing significant roles in marine ecosystems, which often exceed the size limit for the most reliable high-pressure freezing. Here we show graphite oxide dispersed in sucrose solution as a good glue to freeze, expose cross-section by cryo-ultramicrotome, and analyze elemental distribution owing to the glue's high viscosity, adhesion force, and electron conductivity. To demonstrate the effectiveness and applicability of the glue for cryo-SEM-EDS, deep-sea foraminifer Uvigerina akitaensis was sampled during a cruise and plunge frozen directly on the research vessel, where the liquid nitrogen supply is limited. The microstructures were preserved as faithfully in cryo-SEM images as those with the conventional resin-substituted transmission electron micrograph. We found elements colocalized within the cytoplasm originating from water-soluble compounds that can be lost with conventional dehydrative fixation.
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Affiliation(s)
- Satoshi Okada
- Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa 237-0061, Japan
| | - Julien Richirt
- Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa 237-0061, Japan
| | - Akihiro Tame
- Marine Works, Japan Ltd., 3-54-1 Oppama-Higashi-cho, Yokosuka, Kanagawa 237-0063, Japan
- Faculty of Medical Sciences, Life Science Research Laboratory, University of Fukui, 23-3 Matsuoka Shimoaizuki, Eiheiji-cho, Yoshida-gun, Fukui 910-1193, Japan
| | - Hidetaka Nomaki
- Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa 237-0061, Japan
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2
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Sánchez A, Gómez-León A. Azoic sediments and benthic foraminifera: Environmental quality in a subtropical coastal lagoon in the gulf of California. Environ Res 2024; 244:117924. [PMID: 38101722 DOI: 10.1016/j.envres.2023.117924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 09/30/2023] [Accepted: 12/09/2023] [Indexed: 12/17/2023]
Abstract
Marine transitional environments play an important role in human sustainability. Around these ecosystems, coastal lagoons are subject to high anthropogenic pressure from population growth. The increased demand for goods and services is associated with the elevated discharge of untreated and treated wastewater into lagoon systems. The absence of benthic organisms in lagoon environments has been linked to extreme natural conditions and severe anthropogenic impact at both spatial and temporal scales. However, the mechanisms that lead to the presence of azoic sediments in lagoon environments have yet to be studied. This study aimed to determine the vertical variability of textural groups, geochemistry, and benthic foraminiferal fauna to understand how natural and anthropogenic components generate a vertical sediment sequence with low or absent benthic foraminifera in a subtropical coastal lagoon in the southwestern end of the Gulf of California. A 41 cm-long sediment core was collected from La Paz Lagoon at a 1-m depth. The core was sectioned every centimeter, and sediment subsamples were dried and homogenized for grain size, calcium carbonate, elemental and isotopic carbon and nitrogen analyses, and benthic foraminifera quantification. Muds with fine sands towards the core's base characterized the sedimentary sequence. Organic carbon and total nitrogen increased from the base (1.4% and 0.06%, respectively) to the core-top (CT, 3.0% and 0.14%, respectively), significant from the 27 cm interval. Calcium carbonate content was very low (<0.8%). The relationship of δ13C vs. C:N ratio indicated that sedimentary organic carbon was derived from the marine and sewage source mixture. The δ15N of organic matter increased by 3.7‰, starting from the 27 cm interval towards the CT. The nitrogen sewage input source was relatively more significant than nitrogen fixation. The few individuals (<18 ind. in 10 g) and genera (Ammonia and Elphidium), as well as the absence of foraminifera in 19 of 41 intervals in the core, indicated that environmental conditions were unfavorable, even for colonization of environmentally stress-tolerant genera. The frequency of azoic sediments was higher from the 25 cm interval to the CT vs. from the base to the 25 cm interval. Moreover, the AEI revealed severe to moderate hypoxia in the study area. The limited presence of benthic foraminifera and calcium carbonate preservation corroborated that the quality of the lagoon's environment has deteriorated along with population growth, which requires strategic programs to sustain this transitional ecosystem.
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Affiliation(s)
- Alberto Sánchez
- Centro Interdisciplinario de Ciencias Marinas, Instituto Politécnico Nacional, La Paz, B.C.S, Mexico.
| | - Adriana Gómez-León
- Centro Interdisciplinario de Ciencias Marinas, Instituto Politécnico Nacional, La Paz, B.C.S, Mexico
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3
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Dämmer LK, Ivkić A, de Nooijer L, Renema W, Webb AE, Reichart GJ. Impact of dissolved CO2 on calcification in two large, benthic foraminiferal species. PLoS One 2023; 18:e0289122. [PMID: 37585361 PMCID: PMC10431644 DOI: 10.1371/journal.pone.0289122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2023] [Accepted: 07/12/2023] [Indexed: 08/18/2023] Open
Abstract
Rising atmospheric CO2 shifts the marine inorganic carbonate system and decreases seawater pH, a process often abbreviated to 'ocean acidification'. Since acidification decreases the saturation state for crystalline calcium carbonate (e.g., calcite and aragonite), rising dissolved CO2 levels will either increase the energy demand for calcification or reduce the total amount of CaCO3 precipitated. Here we report growth of two large benthic photosymbiont-bearing foraminifera, Heterostegina depressa and Amphistegina lessonii, cultured at four different ocean acidification scenarios (400, 700, 1000 and 2200 ppm atmospheric pCO2). Using the alkalinity anomaly technique, we calculated the amount of calcium carbonate precipitated during the incubation and found that both species produced the most carbonate at intermediate CO2 levels. The chamber addition rates for each of the conditions were also determined and matched the changes in alkalinity. These results were complemented by micro-CT scanning of selected specimens to visualize the effect of CO2 on growth. The increased chamber addition rates at elevated CO2 concentrations suggest that both foraminifera species can take advantage of the increased availability of the inorganic carbon, despite a lower saturation state. This adds to the growing number of reports showing the variable response of foraminifera to elevated CO2 concentrations, which is likely a consequence of differences in calcification mechanisms.
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Affiliation(s)
- Linda Karoline Dämmer
- Department of Ocean Systems, NIOZ Royal Netherlands Institute for Sea Research, Texel, The Netherlands
| | - Angelina Ivkić
- Department of Ocean Systems, NIOZ Royal Netherlands Institute for Sea Research, Texel, The Netherlands
| | - Lennart de Nooijer
- Department of Ocean Systems, NIOZ Royal Netherlands Institute for Sea Research, Texel, The Netherlands
| | - Willem Renema
- Marine Biodiversity, Naturalis Biodiversity Center, Leiden, The Netherlands
- Department of Ecosystem & Landscape Dynamics, Institute for Biodiversity & Ecosystem Dynamics (IBED), University of Amsterdam, Amsterdam, The Netherlands
| | - Alice E. Webb
- Department of Ocean Systems, NIOZ Royal Netherlands Institute for Sea Research, Texel, The Netherlands
| | - Gert-Jan Reichart
- Department of Ocean Systems, NIOZ Royal Netherlands Institute for Sea Research, Texel, The Netherlands
- Department of Earth Sciences, Faculty of Geosciences, Utrecht University, Utrecht, The Netherlands
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Dubicka Z, Bojanowski MJ, Bijma J, Bickmeyer U. Mg-rich amorphous to Mg-low crystalline CaCO 3 pathway in foraminifera. Heliyon 2023; 9:e18331. [PMID: 37519760 PMCID: PMC10375801 DOI: 10.1016/j.heliyon.2023.e18331] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 07/13/2023] [Accepted: 07/13/2023] [Indexed: 08/01/2023] Open
Abstract
Calcium carbonate minerals produced by marine organisms play a central role in the global carbon cycle and carbonate sedimentation, which influence the climate by regulating atmospheric CO2 levels. Foraminifera are important marine single-celled organisms that have produced calcite shells for over 300 million years. Here, we present new observations promoting our understanding for foraminiferal biocalcification by studying Amphistegina lessonii. We integrated in vivo confocal autofluorescence and dye fluorescence imaging with elemental analysis of the cell supporting the concept that the calcite shells of foraminifera are produced via deposition of intracellularly formed Mg-rich amorphous calcium carbonate (Mg-ACC) particles that transform into a stable mineral phase. This process is likely accompanied by the activity of endosymbiotic microalgae and seawater-derived endocytic vesicles that provide calcification substrates such as DIC, Ca2+, and Mg2+. The final transformation of semi-liquid amorphous nanoparticles into a crystalline shell was associated with Mg2+ liberation.
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Affiliation(s)
- Zofia Dubicka
- Ecological Chemistry, Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, Bremerhaven, 27-570, Germany
- University of Warsaw, Warsaw, 02-089, Poland
| | | | - Jelle Bijma
- Marine Biogeosciences, Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, Bremerhaven, 27-570, Germany
| | - Ulf Bickmeyer
- Ecological Chemistry, Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, Bremerhaven, 27-570, Germany
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Ujiié Y, Ishitani Y, Nagai Y, Takaki Y, Toyofuku T, Ishii S. Unique evolution of foraminiferal calcification to survive global changes. Sci Adv 2023; 9:eadd3584. [PMID: 37343099 DOI: 10.1126/sciadv.add3584] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Accepted: 05/15/2023] [Indexed: 06/23/2023]
Abstract
Foraminifera, the most ancient known calcium carbonate-producing eukaryotes, are crucial players in global biogeochemical cycles and well-used environmental indicators in biogeosciences. However, little is known about their calcification mechanisms. This impedes understanding the organismal responses to ocean acidification, which alters marine calcium carbonate production, potentially leading to biogeochemical cycle changes. We conducted comparative single-cell transcriptomics and fluorescent microscopy and identified calcium ion (Ca2+) transport/secretion genes and α-carbonic anhydrases that control calcification in a foraminifer. They actively take up Ca2+ to boost mitochondrial adenosine triphosphate synthesis during calcification but need to pump excess intracellular Ca2+ to the calcification site to prevent cell death. Unique α-carbonic anhydrase genes induce the generation of bicarbonate and proton from multiple CO2 sources. These control mechanisms have evolved independently since the Precambrian to enable the development of large cells and calcification despite decreasing Ca2+ concentrations and pH in seawater. The present findings provide previously unknown insights into the calcification mechanisms and their subsequent function in enduring ocean acidification.
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Affiliation(s)
- Yurika Ujiié
- Marine Core Research Institute, Kochi University, Kōchi, Japan
| | - Yoshiyuki Ishitani
- Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan
| | - Yukiko Nagai
- Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan
- National Museum of Nature and Science, Tokyo, Japan
| | - Yoshihiro Takaki
- Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan
| | - Takashi Toyofuku
- Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan
- Tokyo University of Marine Science and Technology (TUMSAT), Tokyo, Japan
| | - Shun'ichi Ishii
- Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan
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6
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Lastam J, Griesshaber E, Yin X, Rupp U, Sánchez-Almazo I, Heß M, Walther P, Checa A, Schmahl WW. The unique fibrilar to platy nano- and microstructure of twinned rotaliid foraminiferal shell calcite. Sci Rep 2023; 13:2189. [PMID: 36750636 DOI: 10.1038/s41598-022-25082-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Accepted: 11/24/2022] [Indexed: 02/09/2023] Open
Abstract
Diversification of biocrystal arrangements, incorporation of biopolymers at many scale levels and hierarchical architectures are keys for biomaterial optimization. The planktonic rotaliid foraminifer Pulleniatina obliquiloculata displays in its shell a new kind of mesocrystal architecture. Shell formation starts with crystallization of a rhizopodial network, the primary organic sheet (POS). On one side of the POS, crystals consist of blocky domains of 1 μm. On the other side of the POS crystals have dendritic-fractal morphologies, interdigitate and reach sizes of tens of micrometers. The dendritic-fractal crystals are twinned. At the site of nucleation, twinned crystals consist of minute fibrils. With distance away from the nucleation-site, fibrils evolve to bundles of crystallographically well co-oriented nanofibrils and to, twinned, platy-blade-shaped crystals that seam outer shell surfaces. The morphological nanofibril axis is the crystallographic c-axis, both are perpendicular to shell vault. The nanofibrillar calcite is polysynthetically twinned according to the 60°/[100] (= m/{001}) twin law. We demonstrate for the twinned, fractal-dendritic, crystals formation at high supersaturation and growth through crystal competition. We show also that c-axis-alignment is already induced by biopolymers of the POS and is not simply a consequence of growth competition. We discuss determinants that lead to rotaliid calcite formation.
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7
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Wang X, Li P, Cao X, Liu B, He S, Cao Z, Xing S, Liu L, Li ZH. Effects of ocean acidification and tralopyril on bivalve biomineralization and carbon cycling: A study of the Pacific Oyster (Crassostrea gigas). Environ Pollut 2022; 313:120161. [PMID: 36100119 DOI: 10.1016/j.envpol.2022.120161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Revised: 08/21/2022] [Accepted: 09/08/2022] [Indexed: 06/15/2023]
Abstract
The combined effects of emerging pollutants and ocean acidification (OA) on marine organisms and marine ecosystems have attracted increasing attention. However, the combined effects of tralopyril and OA on marine organisms and marine ecosystems remain unclear. In this study, Crassostrea gigas (C. gigas) were exposed to tralopyril (1 μg/L) and/or OA (PH = 7.7) for 21 days and a 14-day recovery acclimation. To investigate the stress response and potential molecular mechanisms of C. gigas to OA and tralopyril exposure alone or in combination, as well as the effects of OA and/or tralopyril on bivalve biomineralization and marine carbon cycling. The results showed that the combined toxicity was between that of acidification and tralopyril alone. Single or combined exposure activated the general stress defense responses of C. gigas mantle, affected energy metabolism and biomineralization of the organism and the carbon cycle of the marine ecosystem. Moreover, acidification-induced and tralopyril-induced toxicity showed potential recoverability at molecular and biochemical levels. This study provides a new perspective on the molecular mechanisms of tralopyril toxicity to bivalve shellfish and reveals the potential role of tralopyril and OA on marine carbon cycling.
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Affiliation(s)
- Xu Wang
- Marine College, Shandong University, Weihai, Shandong, 264209, China
| | - Ping Li
- Marine College, Shandong University, Weihai, Shandong, 264209, China
| | - Xuqian Cao
- Marine College, Shandong University, Weihai, Shandong, 264209, China
| | - Bin Liu
- Marine College, Shandong University, Weihai, Shandong, 264209, China
| | - Shuwen He
- Marine College, Shandong University, Weihai, Shandong, 264209, China
| | - Zhihan Cao
- Marine College, Shandong University, Weihai, Shandong, 264209, China
| | - Shaoying Xing
- Marine College, Shandong University, Weihai, Shandong, 264209, China
| | - Ling Liu
- Marine College, Shandong University, Weihai, Shandong, 264209, China
| | - Zhi-Hua Li
- Marine College, Shandong University, Weihai, Shandong, 264209, China.
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8
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Leung JYS, Zhang S, Connell SD. Is Ocean Acidification Really a Threat to Marine Calcifiers? A Systematic Review and Meta-Analysis of 980+ Studies Spanning Two Decades. Small 2022; 18:e2107407. [PMID: 35934837 DOI: 10.1002/smll.202107407] [Citation(s) in RCA: 41] [Impact Index Per Article: 20.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Revised: 06/24/2022] [Indexed: 06/15/2023]
Abstract
Ocean acidification is considered detrimental to marine calcifiers, but mounting contradictory evidence suggests a need to revisit this concept. This systematic review and meta-analysis aim to critically re-evaluate the prevailing paradigm of negative effects of ocean acidification on calcifiers. Based on 5153 observations from 985 studies, many calcifiers (e.g., echinoderms, crustaceans, and cephalopods) are found to be tolerant to near-future ocean acidification (pH ≈ 7.8 by the year 2100), but coccolithophores, calcifying algae, and corals appear to be sensitive. Calcifiers are generally more sensitive at the larval stage than adult stage. Over 70% of the observations in growth and calcification are non-negative, implying the acclimation capacity of many calcifiers to ocean acidification. This capacity can be mediated by phenotypic plasticity (e.g., physiological, mineralogical, structural, and molecular adjustments), transgenerational plasticity, increased food availability, or species interactions. The results suggest that the impacts of ocean acidification on calcifiers are less deleterious than initially thought as their adaptability has been underestimated. Therefore, in the forthcoming era of ocean acidification research, it is advocated that studying how marine organisms persist is as important as studying how they perish, and that future hypotheses and experimental designs are not constrained within the paradigm of negative effects.
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Affiliation(s)
- Jonathan Y S Leung
- Faculty of Materials and Energy, Southwest University, Chongqing, 400715, P. R. China
- Southern Seas Ecology Laboratories, School of Biological Sciences, The University of Adelaide, Adelaide, South Australia, 5005, Australia
| | - Sam Zhang
- Faculty of Materials and Energy, Southwest University, Chongqing, 400715, P. R. China
| | - Sean D Connell
- Southern Seas Ecology Laboratories, School of Biological Sciences, The University of Adelaide, Adelaide, South Australia, 5005, Australia
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Charrieau LM, Nagai Y, Kimoto K, Dissard D, Below B, Fujita K, Toyofuku T. The coral reef-dwelling Peneroplis spp. shows calcification recovery to ocean acidification conditions. Sci Rep 2022; 12. [PMID: 35430588 PMCID: PMC9013382 DOI: 10.1038/s41598-022-10375-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2021] [Accepted: 04/01/2022] [Indexed: 11/19/2022] Open
Abstract
Large Benthic Foraminifera are a crucial component of coral-reef ecosystems, which are currently threatened by ocean acidification. We conducted culture experiments to evaluate the impact of low pH on survival and test dissolution of the symbiont-bearing species Peneroplis spp., and to observe potential calcification recovery when specimens are placed back under reference pH value (7.9). We found that Peneroplis spp. displayed living activity up to 3 days at pH 6.9 (Ωcal < 1) or up to 1 month at pH 7.4 (Ωcal > 1), despite the dark and unfed conditions. Dissolution features were observed under low Ωcal values, such as changes in test density, peeled extrados layers, and decalcified tests with exposed organic linings. A new calcification phase started when specimens were placed back at reference pH. This calcification’s resumption was an addition of new chambers without reparation of the dissolved parts, which is consistent with the porcelaneous calcification pathway of Peneroplis spp. The most decalcified specimens displayed a strong survival response by adding up to 8 new chambers, and the contribution of food supply in this process was highlighted. These results suggest that porcelaneous LBF species have some recovery abilities to short exposure (e.g., 3 days to 1 month) to acidified conditions. However, the geochemical signature of trace elements in the new calcite was impacted, and the majority of the new chambers were distorted and resulted in abnormal tests, which might hinder the specimens’ reproduction and thus their survival on the long term.
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Melaniuk K, Sztybor K, Treude T, Sommer S, Rasmussen TL. Influence of methane seepage on isotopic signatures in living deep-sea benthic foraminifera, 79° N. Sci Rep 2022; 12:1169. [PMID: 35064198 PMCID: PMC8782907 DOI: 10.1038/s41598-022-05175-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2021] [Accepted: 01/07/2022] [Indexed: 11/09/2022] Open
Abstract
Fossil benthic foraminifera are used to trace past methane release linked to climate change. However, it is still debated whether isotopic signatures of living foraminifera from methane-charged sediments reflect incorporation of methane-derived carbon. A deeper understanding of isotopic signatures of living benthic foraminifera from methane-rich environments will help to improve reconstructions of methane release in the past and better predict the impact of future climate warming on methane seepage. Here, we present isotopic signatures (δ13C and δ18O) of foraminiferal calcite together with biogeochemical data from Arctic seep environments from c. 1200 m water depth, Vestnesa Ridge, 79° N, Fram Strait. Lowest δ13C values were recorded in shells of Melonis barleeanus, - 5.2‰ in live specimens and - 6.5‰ in empty shells, from sediments dominated by aerobic (MOx) and anaerobic oxidation of methane (AOM), respectively. Our data indicate that foraminifera actively incorporate methane-derived carbon when living in sediments with moderate seepage activity, while in sediments with high seepage activity the poisonous sulfidic environment leads to death of the foraminifera and an overgrowth of their empty shells by methane-derived authigenic carbonates. We propose that the incorporation of methane-derived carbon in living foraminifera occurs via feeding on methanotrophic bacteria and/or incorporation of ambient dissolved inorganic carbon.
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Affiliation(s)
- Katarzyna Melaniuk
- Centre of Arctic Gas Hydrate, Environment and Climate, Department of Geosciences, UiT The Arctic University of Norway, Tromsø, Norway.
| | | | - Tina Treude
- Department of Earth, Planetary, and Space Sciences, University of California Los Angeles, Los Angeles, USA.,Department of Atmospheric and Oceanic Sciences, University of California Los Angeles, Los Angeles, USA
| | - Stefan Sommer
- GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany
| | - Tine L Rasmussen
- Centre of Arctic Gas Hydrate, Environment and Climate, Department of Geosciences, UiT The Arctic University of Norway, Tromsø, Norway
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11
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Rangel-Yescas G, Cervantes C, Cervantes-Rocha MA, Suárez-Delgado E, Banaszak AT, Maldonado E, Ramsey IS, Rosenbaum T, Islas LD. Discovery and characterization of H v1-type proton channels in reef-building corals. eLife 2021; 10:e69248. [PMID: 34355697 PMCID: PMC8346283 DOI: 10.7554/elife.69248] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Accepted: 06/30/2021] [Indexed: 12/18/2022] Open
Abstract
Voltage-dependent proton-permeable channels are membrane proteins mediating a number of important physiological functions. Here we report the presence of a gene encoding Hv1 voltage-dependent, proton-permeable channels in two species of reef-building corals. We performed a characterization of their biophysical properties and found that these channels are fast-activating and modulated by the pH gradient in a distinct manner. The biophysical properties of these novel channels make them interesting model systems. We have also developed an allosteric gating model that provides mechanistic insight into the modulation of voltage-dependence by protons. This work also represents the first functional characterization of any ion channel in scleractinian corals. We discuss the implications of the presence of these channels in the membranes of coral cells in the calcification and pH-regulation processes and possible consequences of ocean acidification related to the function of these channels.
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Affiliation(s)
- Gisela Rangel-Yescas
- Departmento de Fisiología, Facultad of Medicina, Universidad Nacional Autónoma de México, Mexico City, Mexico
| | - Cecilia Cervantes
- Departmento de Fisiología, Facultad of Medicina, Universidad Nacional Autónoma de México, Mexico City, Mexico
| | - Miguel A Cervantes-Rocha
- Departmento de Fisiología, Facultad of Medicina, Universidad Nacional Autónoma de México, Mexico City, Mexico
| | - Esteban Suárez-Delgado
- Departmento de Fisiología, Facultad of Medicina, Universidad Nacional Autónoma de México, Mexico City, Mexico
| | - Anastazia T Banaszak
- Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Mexico
| | - Ernesto Maldonado
- EvoDevo Research Group, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Mexico
| | - Ian Scott Ramsey
- Department of Physiology and Biophysics, School of Medicine, Virginia Commonwealth University, Richmond, United States
| | - Tamara Rosenbaum
- Departmento of Neurociencia Cognitiva, Instituto de Fisiología Celular, Universidad Nacional Autónoma de México, Mexico City, Mexico
| | - Leon D Islas
- Departmento de Fisiología, Facultad of Medicina, Universidad Nacional Autónoma de México, Mexico City, Mexico
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12
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Zarkogiannis SD. Disruption of the Atlantic Meridional Circulation during Deglacial Climates Inferred from Planktonic Foraminiferal Shell Weights. JMSE 2021; 9:519. [DOI: 10.3390/jmse9050519] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Changes in the density structure of the upper oceanic water masses are an important forcing of changes in the Atlantic Meridional Overturning Circulation (AMOC), which is believed to widely affect Earth’s climate. However, very little is known about past changes in the density structure of the Atlantic Ocean, despite being extensively studied. The physical controls on planktonic foraminifera calcification are explored here, to obtain a first-order approximation of the horizontal density gradient in the eastern Atlantic during the last 200,000 years. Published records of Globigerina bulloides shells from the North and Tropical eastern Atlantic were complemented by the analysis of a South Atlantic core. The masses of the same species shells from three different dissolution assessed sediment cores along the eastern Atlantic Ocean were converted to seawater density values using a calibration equation. Foraminifera, as planktonic organisms, are subject to the physical properties of the seawater and thus their shells are sensitive to buoyancy forcing through surface temperature and salinity perturbations. By using planktonic foraminifera shell weight as an upper ocean density proxy, two intervals of convergence of the shell masses are identified during cold intervals of the last two deglaciations that may be interpreted as weak ocean density gradients, indicating nearly or completely eliminated meridional circulation, while interhemispheric Atlantic density differences appear to alleviate with the onset of the last interglacial. The results confirm the significance of variations in the density of Atlantic surface waters for meridional circulation changes.
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Yin X, Griesshaber E, Checa A, Nindiyasari-Behal F, Sánchez-Almazo I, Ziegler A, Schmahl WW. Calcite crystal orientation patterns in the bilayers of laminated shells of benthic rotaliid foraminifera. J Struct Biol 2021; 213:107707. [PMID: 33581285 DOI: 10.1016/j.jsb.2021.107707] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2020] [Revised: 01/26/2021] [Accepted: 02/01/2021] [Indexed: 11/30/2022]
Abstract
Shells of calcifying foraminifera play a major role in marine biogeochemical cycles; fossil shells form important archives for paleoenvironment reconstruction. Despite their importance in many Earth science disciplines, there is still little consensus on foraminiferal shell mineralization. Geochemical, biochemical, and physiological studies showed that foraminiferal shell formation might take place through various and diverse mineralization mechanisms. In this study, we contribute to benthic foraminiferal shell calcification through deciphering crystallite organization within the shells. We base our conclusions on results gained from electron backscattered diffraction (EBSD) measurements and describe microstructure/texture characteristics within the laminated shell walls of the benthic, symbiontic foraminifera: Ammonia tepida, Amphistegina lobifera, Amphistegina lessonii. We highlight crystallite assembly patterns obtained on differently oriented cuts and discuss crystallite sizes, morphologies, interlinkages, orientations, and co-orientation strengths. We show that: (i) crystals within benthic foraminiferal shells are mesocrystals, (ii) have dendritic-fractal morphologies and (iii) interdigitate strongly. Based on crystal size, we (iv) differentiate between the two layers that comprise the shells and demonstrate that (v) crystals in the septa have different assemblies relative to those in the shell walls. We highlight that (vi) at junctions of different shell elements the axis of crystal orientation jumps abruptly such that their assembly in EBSD maps has a bimodal distribution. We prove (vii) extensive twin-formation within foraminiferal calcite; we demonstrate (viii) the presence of two twin modes: 60°/[001] and 77°/~[6 -6 1] and visualize their distributions within the shells. In a broader perspective, we draw conclusions on processes that lead to the observed microstructure/texture patterns.
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Affiliation(s)
- X Yin
- Department für Geo- und Umweltwissenschaften, Ludwig-Maximilians-Universität München, 80333 Munich, Germany.
| | - E Griesshaber
- Department für Geo- und Umweltwissenschaften, Ludwig-Maximilians-Universität München, 80333 Munich, Germany
| | - A Checa
- Departamento de Estratigrafía y Paleontología, Universidad de Granada, Granada, Spain, and Instituto Andaluz de Ciencias de la Tierra, CSIC-Universidad de Granada, Armilla, Spain
| | | | - I Sánchez-Almazo
- Centro de Instrumentación Científica, Universidad de Granada, 18071 Granada, Spain
| | - A Ziegler
- Zentrale Einrichtung Elektronenmikroskopie, Universität Ulm, 89081 Ulm, Germany
| | - W W Schmahl
- Department für Geo- und Umweltwissenschaften, Ludwig-Maximilians-Universität München, 80333 Munich, Germany
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14
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Caridi F, Sabbatini A, Birarda G, Costanzi E, De Giudici G, Galeazzi R, Medas D, Mobbili G, Ricciutelli M, Ruello ML, Vaccari L, Negri A. Cigarette butts, a threat for marine environments: Lessons from benthic foraminifera (Protista). Mar Environ Res 2020; 162:105150. [PMID: 32992223 DOI: 10.1016/j.marenvres.2020.105150] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Revised: 09/02/2020] [Accepted: 09/10/2020] [Indexed: 06/11/2023]
Abstract
Cigarette butts are the most common form of litter in the world and their environmental impact is related to both persistence and potential toxic effects for chemical composition. The objective of this study was to assess the acute toxicity (LC50-48 h) of human-smoked cigarette butts leachate on 3 cultured genera of benthic foraminifera: the calcareous perforate Rosalina globularis, the calcareous imperforate Quinqueloculina spp., and the agglutinated Textularia agglutinans. The specimens were exposed to 16, 8, 4, 2, and 1 cigarette butts/L concentrations that prove to be acutely toxic to all taxa. Starting from 4 cigarette butts/L, both calcareous genera showed shell decalcification, and death of almost all the individuals, except for the more resistant agglutinated species. These results suggest the potential harmfulness of cigarette butts leachate related to pH reduction and release of toxic substances, in particular nicotine, which leads to physiology alteration and in many cases cellular death.
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Affiliation(s)
- Francesca Caridi
- Department of Life and Environmental Science, Università Politecnica delle Marche, via Brecce Bianche, 60122, Ancona, Italy.
| | - Anna Sabbatini
- Department of Life and Environmental Science, Università Politecnica delle Marche, via Brecce Bianche, 60122, Ancona, Italy.
| | - Giovanni Birarda
- Elettra - Sincrotrone Trieste S.C.p.A. S.S. 14 km 163,5 in Area Science Park, 34149, Basovizza, Trieste, Italy.
| | - Elisa Costanzi
- Department of Life and Environmental Science, Università Politecnica delle Marche, via Brecce Bianche, 60122, Ancona, Italy.
| | - Giovanni De Giudici
- Department of Chemical and Geological Sciences, Università degli Studi di Cagliari, via Trentino 51, 09127, Cagliari, Italy.
| | - Roberta Galeazzi
- Department of Life and Environmental Science, Università Politecnica delle Marche, via Brecce Bianche, 60122, Ancona, Italy.
| | - Daniela Medas
- Department of Chemical and Geological Sciences, Università degli Studi di Cagliari, Cittadella Universitaria di Monserrato - Blocco A, S.S. 554 bivio per Sestu, 09042, Monserrato (CA), Italy.
| | - Giovanna Mobbili
- Department of Life and Environmental Science, Università Politecnica delle Marche, via Brecce Bianche, 60122, Ancona, Italy.
| | - Massimo Ricciutelli
- Department of Chemical Sciences, Università di Camerino, Via S. Agostino 1, 62032, Camerino (MC), Italy.
| | - Maria Letizia Ruello
- Department of Life and Environmental Science, Università Politecnica delle Marche, via Brecce Bianche, 60122, Ancona, Italy.
| | - Lisa Vaccari
- Elettra - Sincrotrone Trieste S.C.p.A. S.S. 14 km 163,5 in Area Science Park, 34149, Basovizza, Trieste, Italy.
| | - Alessandra Negri
- Department of Life and Environmental Science, Università Politecnica delle Marche, via Brecce Bianche, 60122, Ancona, Italy.
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15
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Hu MY, Petersen I, Chang WW, Blurton C, Stumpp M. Cellular bicarbonate accumulation and vesicular proton transport promote calcification in the sea urchin larva. Proc Biol Sci 2020; 287:20201506. [PMID: 32900308 PMCID: PMC7542784 DOI: 10.1098/rspb.2020.1506] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Accepted: 08/07/2020] [Indexed: 12/12/2022] Open
Abstract
The sea urchin embryo develops a calcitic endoskeleton through intracellular formation of amorphous calcium carbonate (ACC). Intracellular precipitation of ACC, requires [Formula: see text] concentrating as well as proton export mechanisms to promote calcification. These processes are of fundamental importance in biological mineralization, but remain largely unexplored. Here, we demonstrate that the calcifying primary mesenchyme cells (PMCs) use Na+/H+-exchange (NHE) mechanisms to control cellular pH homeostasis during maintenance of the skeleton. During skeleton re-calcification, pHi of PMCs is increased accompanied by substantial elevation in intracellular [Formula: see text] mediated by the [Formula: see text] cotransporter Sp_Slc4a10. However, PMCs lower their pHi regulatory capacities associated with a reduction in NHE activity. Live-cell imaging using green fluorescent protein reporter constructs in combination with intravesicular pH measurements demonstrated alkaline and acidic populations of vesicles in PMCs and extensive trafficking of large V-type H+-ATPase (VHA)-rich acidic vesicles in blastocoelar filopodial cells. Pharmacological and gene expression analyses underline a central role of the VHA isoforms Sp_ATP6V0a1, Sp_ATP6V01_1 and Sp_ATPa1-4 for the process of skeleton re-calcification. These results highlight novel pH regulatory strategies in calcifying cells of a marine species with important implications for our understanding of the mineralization process in times of rapid changes in oceanic pH.
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Affiliation(s)
- Marian Y. Hu
- Institute of Physiology, Christian-Albrechts-University Kiel, Hermann-Rodewaldstraße 5, 24118 Kiel, Germany
| | - Inga Petersen
- Institute of Physiology, Christian-Albrechts-University Kiel, Hermann-Rodewaldstraße 5, 24118 Kiel, Germany
| | - William Weijen Chang
- Institute of Physiology, Christian-Albrechts-University Kiel, Hermann-Rodewaldstraße 5, 24118 Kiel, Germany
| | - Christine Blurton
- Institute of Immunobiology, Christian-Albrechts-University Kiel, Am Botanischen Garten 1-9, 24118 Kiel, Germany
| | - Meike Stumpp
- Institute of Immunobiology, Christian-Albrechts-University Kiel, Am Botanischen Garten 1-9, 24118 Kiel, Germany
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16
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Tresguerres M, Clifford AM, Harter TS, Roa JN, Thies AB, Yee DP, Brauner CJ. Evolutionary links between intra- and extracellular acid-base regulation in fish and other aquatic animals. J Exp Zool A Ecol Integr Physiol 2020; 333:449-465. [PMID: 32458594 DOI: 10.1002/jez.2367] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2019] [Revised: 03/10/2020] [Accepted: 05/06/2020] [Indexed: 12/17/2022]
Abstract
The acid-base relevant molecules carbon dioxide (CO2 ), protons (H+ ), and bicarbonate (HCO3 - ) are substrates and end products of some of the most essential physiological functions including aerobic and anaerobic respiration, ATP hydrolysis, photosynthesis, and calcification. The structure and function of many enzymes and other macromolecules are highly sensitive to changes in pH, and thus maintaining acid-base homeostasis in the face of metabolic and environmental disturbances is essential for proper cellular function. On the other hand, CO2 , H+ , and HCO3 - have regulatory effects on various proteins and processes, both directly through allosteric modulation and indirectly through signal transduction pathways. Life in aquatic environments presents organisms with distinct acid-base challenges that are not found in terrestrial environments. These include a relatively high CO2 relative to O2 solubility that prevents internal CO2 /HCO3 - accumulation to buffer pH, a lower O2 content that may favor anaerobic metabolism, and variable environmental CO2 , pH and O2 levels that require dynamic adjustments in acid-base homeostatic mechanisms. Additionally, some aquatic animals purposely create acidic or alkaline microenvironments that drive specialized physiological functions. For example, acidifying mechanisms can enhance O2 delivery by red blood cells, lead to ammonia trapping for excretion or buoyancy purposes, or lead to CO2 accumulation to promote photosynthesis by endosymbiotic algae. On the other hand, alkalinizing mechanisms can serve to promote calcium carbonate skeletal formation. This nonexhaustive review summarizes some of the distinct acid-base homeostatic mechanisms that have evolved in aquatic organisms to meet the particular challenges of this environment.
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Affiliation(s)
- Martin Tresguerres
- Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, California
| | - Alexander M Clifford
- Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, California
| | - Till S Harter
- Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, California
| | - Jinae N Roa
- Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, California
| | - Angus B Thies
- Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, California
| | - Daniel P Yee
- Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, California
| | - Colin J Brauner
- Department of Zoology, University of British Columbia, Vancouver, Canada
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17
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Marques JA, Abrantes DP, Marangoni LF, Bianchini A. Ecotoxicological responses of a reef calcifier exposed to copper, acidification and warming: A multiple biomarker approach. Environ Pollut 2020; 257:113572. [PMID: 31753625 DOI: 10.1016/j.envpol.2019.113572] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2019] [Revised: 10/25/2019] [Accepted: 11/03/2019] [Indexed: 06/10/2023]
Abstract
Multiple global and local stressors threat coral reefs worldwide, and symbiont-bearing foraminifera are bioindicators of reef health. The aim of this study was to investigate single and combined effects of copper (Cu) and climate change related stressors (ocean acidification and warming) on a symbiont-bearing foraminifer by means of an integrated biomarker analysis. Using a mesocosm approach, Amphistegina gibbosa were exposed for 25 days to acidification, warming and/or Cu contamination on a full orthogonal design (two levels each factor). Cu was the main factor increasing bleaching and respiration rates. Warming was the main cause of mortality and reduced growth. Calcification related enzymes were inhibited in response to Cu exposure and, in general, the inhibition was stronger under climate change. Multiple biological endpoints responded to realistic exposure scenarios in different ways, but evidenced general stress posed by climate change combined with Cu. These biological responses drove the high values found for the 'stress index' IBR (Integrated Biomarker Response) - indicating general organismal health impairment under the multiple stressor scenario. Our results provide insights for coral reef management by detecting potential monitoring tools. The ecotoxicological responses indicated that Cu reduces the tolerance of foraminifera to climate change (acidification + warming). Once the endpoints analysed have a high ecological relevance, and that responses were evaluated on a classical reef bioindicator species, these results highlight the high risk of climate change and metal pollution co-exposure to coral reefs. Integrated responses allowed a better effects comprehension and are pointed as a promising tool to monitor pollution effects on a changing ocean.
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Affiliation(s)
- Joseane A Marques
- Programa de Pós-Graduação em Oceanografia Biológica, Universidade Federal do Rio Grande (IO/FURG), Rio Grande, RS, Brazil; Instituto Coral Vivo, Santa Cruz Cabralia, BA, Brazil.
| | - Douglas P Abrantes
- Programa de Pós-Graduação em Zoologia, Universidade Federal do Rio de Janeiro (MNRJ/UFRJ), Rio de Janeiro, RJ, Brazil
| | - Laura Fb Marangoni
- Programa de Pós-Graduação em Oceanografia Biológica, Universidade Federal do Rio Grande (IO/FURG), Rio Grande, RS, Brazil; Instituto Coral Vivo, Santa Cruz Cabralia, BA, Brazil
| | - Adalto Bianchini
- Instituto Coral Vivo, Santa Cruz Cabralia, BA, Brazil; Instituto de Ciências Biológicas, Universidade Federal do Rio Grande (ICB/FURG), Rio Grande, RS, Brazil
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18
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Meng Y, Li C, Li H, Shih K, He C, Yao H, Thiyagarajan V. Recoverable impacts of ocean acidification on the tubeworm, Hydroides elegans: implication for biofouling in future coastal oceans. Biofouling 2019; 35:945-957. [PMID: 31687858 DOI: 10.1080/08927014.2019.1673376] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2018] [Revised: 09/18/2019] [Accepted: 09/19/2019] [Indexed: 06/10/2023]
Abstract
Ocean uptake of anthropogenic CO2 causes ocean acidification (OA), which not only decreases the calcification rate, but also impairs the formation of calcareous shells or tubes in marine invertebrates such as the dominant biofouling tubeworm species, Hydroides elegans. This study examined the ability of tubeworms to resume normal tube calcification when returned to ambient pH 8.1 from a projected near-future OA level of pH 7.8. Tubeworms produced structurally impaired and mechanically weaker calcareous tubes at pH 7.8 compared to at pH 8.1, but were able to recover when the pH was restored to ambient levels. This suggests that tubeworms can physiologically recover from the impacts of OA on tube calcification, composition, density, hardness and stiffness when returned to optimal conditions. These results help understanding of the progression of biofouling communities dominated by tubeworms in future oceans with low pH induced by OA.
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Affiliation(s)
- Yuan Meng
- The Swire Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Hong Kong SAR, China
| | - Chaoyi Li
- The Swire Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Hong Kong SAR, China
| | - Hangkong Li
- Department of Civil Engineering, The University of Hong Kong, Hong Kong SAR, China
| | - Kaimin Shih
- Department of Civil Engineering, The University of Hong Kong, Hong Kong SAR, China
| | - Chong He
- Department of Mechanical Engineering, The Hong Kong Polytechnic University, Hong Kong SAR, China
| | - Haimin Yao
- Department of Mechanical Engineering, The Hong Kong Polytechnic University, Hong Kong SAR, China
| | - V Thiyagarajan
- The Swire Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Hong Kong SAR, China
- State Key Laboratory for Marine Pollution, Hong Kong SAR, China
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19
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Iwasaki S, Kimoto K, Sasaki O, Kano H, Uchida H. Sensitivity of planktic foraminiferal test bulk density to ocean acidification. Sci Rep 2019; 9:9803. [PMID: 31278289 DOI: 10.1038/s41598-019-46041-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2018] [Accepted: 06/17/2019] [Indexed: 11/08/2022] Open
Abstract
The anthropogenic CO2 accumulating in the ocean is lowering seawater carbonate ion concentration and may reduce calcification rates of marine calcareous organisms. Several proxies based on test weights of planktic foraminifera have been used to evaluate the impact of ocean acidification on these organisms. Unfortunately, because of the absence of a method to evaluate the bulk density of a test, the impact of seawater carbonate chemistry on test calcification is still not fully understood. In this study, we measured bulk densities of living Globigerina bulloides (planktic foraminifera) tests with an X-ray micro-computed tomography (XMCT) scanner and compared them with ambient seawater characteristics. Results demonstrated that test bulk densities were controlled by ambient seawater carbonate ion concentrations and that changes of test bulk densities were accompanied by changes in micron to submicron scale porosity of internal ultrastructure. These results suggest that alteration of the bulk density of foraminiferal tests due to acidification of ambient seawater can be directly observed by XMCT scanning. A useful metric of calcification intensity would therefore be physical measurements of test densities with XMCT.
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20
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Simonet Roda M, Ziegler A, Griesshaber E, Yin X, Rupp U, Greiner M, Henkel D, Häussermann V, Eisenhauer A, Laudien J, Schmahl WW. Terebratulide brachiopod shell biomineralization by mantle epithelial cells. J Struct Biol 2019; 207:136-157. [PMID: 31071428 DOI: 10.1016/j.jsb.2019.05.002] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2018] [Revised: 05/02/2019] [Accepted: 05/04/2019] [Indexed: 11/16/2022]
Abstract
To understand mineral transport pathways for shell secretion and to assess differences in cellular activity during mineralization, we imaged with TEM and FE-SEM ultrastructural characteristics of outer mantle epithelium (OME) cells. Imaging was carried out on Magellania venosa shells embedded/etched, chemically fixed/decalcified and high-pressure frozen/freeze-substituted samples from the commissure, central shell portions and from puncta. Imaging results are complemented with morphometric evaluations of volume fractions of membrane-bound organelles. At the commissure the OME consists of several layers of cells. These cells form oblique extensions that, in cross-section, are round below the primary layer and flat underneath fibres. At the commissure the OME is multi-cell layered, in central shell regions it is single-cell layered. When actively secreting shell carbonate extrapallial space is lacking, because OME cells are in direct contact with the calcite of the forming fibres. Upon termination of secretion, OME cells attach via apical hemidesmosomes to extracellular matrix membranes that line the proximal surface of fibres. At the commissure volume fractions for vesicles, mitochondria and lysosomes are higher relative to single-cell layered regions, whereas for endoplasmic-reticulum and Golgi apparatus there is no difference. FE-SEM, TEM imaging reveals the lack of extrapallial space between OME cells and developing fibres. In addition, there is no indication for an amorphous precursor within fibres when these are in active secretion mode. Accordingly, our results do not support transport of minerals by vesicles from cells to sites of mineralization, rather by transfer of carbonate ions via transport mechanisms associated with OME cell membranes.
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Affiliation(s)
- M Simonet Roda
- Department of Earth and Environmental Sciences, LMU, 80333 München, Germany.
| | - A Ziegler
- Central Facility for Electron Microscopy, University of Ulm, 89069 Ulm, Germany
| | - E Griesshaber
- Department of Earth and Environmental Sciences, LMU, 80333 München, Germany
| | - X Yin
- Department of Earth and Environmental Sciences, LMU, 80333 München, Germany
| | - U Rupp
- Central Facility for Electron Microscopy, University of Ulm, 89069 Ulm, Germany
| | - M Greiner
- Department of Earth and Environmental Sciences, LMU, 80333 München, Germany
| | - D Henkel
- Marine Biogeochemistry/Marine Systems, GEOMAR Helmholtz Centre for Ocean Research, 24148 Kiel, Germany
| | - V Häussermann
- Pontificia Universidad Católica de Valparaíso, Facultad de Recursos Naturales, Escuela de Ciencias del Mar, Avda. Brasil, 2950 Valparaíso, Chile; Huinay Scientific Field Station, Puerto Montt, Chile
| | - A Eisenhauer
- Marine Biogeochemistry/Marine Systems, GEOMAR Helmholtz Centre for Ocean Research, 24148 Kiel, Germany
| | - J Laudien
- Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, 27568 Bremerhaven, Germany
| | - W W Schmahl
- Department of Earth and Environmental Sciences, LMU, 80333 München, Germany
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21
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Geerken E, de Nooijer LJ, Roepert A, Polerecky L, King HE, Reichart GJ. Element banding and organic linings within chamber walls of two benthic foraminifera. Sci Rep 2019; 9:3598. [PMID: 30837621 PMCID: PMC6400897 DOI: 10.1038/s41598-019-40298-y] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2018] [Accepted: 02/04/2019] [Indexed: 11/09/2022] Open
Abstract
Trace and minor elements incorporated in foraminiferal shells are among the most used proxies for reconstructing past environmental conditions. A prominent issue concerning these proxies is that the inter-specimen variability in element composition is often considerably larger than the variability associated with the environmental conditions for which the proxy is used. Within a shell of an individual specimen the trace and minor elements are distributed in the form of bands of higher and lower concentrations. It has been hypothesized that differences in specimen-specific element banding patterns cause the inter-specimen and inter-species variability observed in average element composition, thereby reducing the reliability of proxies. To test this hypothesis, we compared spatial distributions of Mg, Na, Sr, K, S, P and N within chamber walls of two benthic foraminiferal species (Amphistegina lessonii and Ammonia tepida) with largely different average Mg content. For both species the selected specimens were grown at different temperatures and salinities to additionally assess how these parameters influence the element concentrations within the shell wall. Our results show that Mg, Na, Sr and K are co-located within shells, and occur in bands that coincide with organic linings but extend further into the calcite lamella. Changes in temperature or salinity modulate the element-banding pattern as a whole, with peak and trough heights co-varying rather than independently affected by these two environmental parameters. This means that independent changes in peak or trough height do not explain differences in average El/Ca between specimens. These results are used to evaluate and synthesize models of underlying mechanisms responsible for trace and minor element partitioning during calcification in foraminifera.
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Affiliation(s)
- E Geerken
- Department of Ocean Systems, NIOZ-Royal Netherlands Institute for Sea Research, and Utrecht University, Den Burg, The Netherlands
| | - L J de Nooijer
- Department of Ocean Systems, NIOZ-Royal Netherlands Institute for Sea Research, and Utrecht University, Den Burg, The Netherlands.
| | - A Roepert
- Faculty of Geosciences, Utrecht University, Utrecht, The Netherlands
| | - L Polerecky
- Faculty of Geosciences, Utrecht University, Utrecht, The Netherlands
| | - H E King
- Faculty of Geosciences, Utrecht University, Utrecht, The Netherlands
| | - G J Reichart
- Department of Ocean Systems, NIOZ-Royal Netherlands Institute for Sea Research, and Utrecht University, Den Burg, The Netherlands.,Faculty of Geosciences, Utrecht University, Utrecht, The Netherlands
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22
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Tyszka J, Bickmeyer U, Raitzsch M, Bijma J, Kaczmarek K, Mewes A, Topa P, Janse M. Form and function of F-actin during biomineralization revealed from live experiments on foraminifera. Proc Natl Acad Sci U S A 2019; 116:4111-6. [PMID: 30782789 DOI: 10.1073/pnas.1810394116] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
Unicellular organisms form endless variability of complex skeletons that serve as archives of Earth’s history and play a crucial role in global geochemical cycles. A longstanding question is how single cells control morphogenesis and mineralization of skeletal structures. Although already addressed by Sir D’Arcy W. Thompson, this problem is still unsolved. Shell emerges from a controlled cascade of interactions at different levels of cellular organization. To gain insight into its morphogenesis, we apply live fluorescent imaging to observe cytoskeleton structures during shell formation in foraminifera. Our live experiments on calcifying foraminiferal chambers show that dynamic F-actin structures are involved in shaping and controlling mineralization. Although the emergence of complex biomineralized forms has been investigated for over a century, still little is known on how single cells control morphology of skeletal structures, such as frustules, shells, spicules, or scales. We have run experiments on the shell formation in foraminifera, unicellular, mainly marine organisms that can build shells by successive additions of chambers. We used live imaging to discover that all stages of chamber/shell formation are controlled by dedicated actin-driven pseudopodial structures. Successive reorganization of an F-actin meshwork, associated with microtubular structures, is actively involved in formation of protective envelope, followed by dynamic scaffolding of chamber morphology. Then lamellar dynamic templates create a confined space and control mineralization separated from seawater. These observations exclude extracellular calcification assumed in selected foraminiferal clades, and instead suggest a semiintracellular biomineralization pattern known from other unicellular calcifying and silicifying organisms. These results give a challenging prospect to decipher the vital effect on geochemical proxies applied to paleoceanographic reconstructions. They have further implications for understanding multiscale complexity of biomineralization and show a prospect for material science applications.
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Meng Y, Guo Z, Yao H, Yeung KWK, Thiyagarajan V. Calcium carbonate unit realignment under acidification: A potential compensatory mechanism in an edible estuarine oyster. Mar Pollut Bull 2019; 139:141-149. [PMID: 30686412 DOI: 10.1016/j.marpolbul.2018.12.030] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2018] [Revised: 12/10/2018] [Accepted: 12/13/2018] [Indexed: 05/27/2023]
Abstract
Ocean acidification (OA) is well-known for impairing marine calcification; however, the end response of several essential species to this perturbation remains unknown. Decreased pH and saturation levels (Ω) of minerals under OA is projected to alter shell crystallography and thus to reduce shell mechanical properties. This study examined this hypothesis using a commercially important estuarine oyster Magallana hongkongensis. Although shell damage occurred on the outmost prismatic layer and the undying myostracum at decreased pH 7.6 and 7.3, the major foliated layer was relatively unharmed. Oysters maintained their shell hardness and stiffness through altered crystal unit orientation under pH 7.6 conditions. However, under the undersaturated conditions (ΩCal ~ 0.8) at pH 7.3, the realigned crystal units in foliated layer ultimately resulted in less stiff shells which indicated although estuarine oysters are mechanically resistant to unfavorable calcification conditions, extremely low pH condition is still a threat to this essential species.
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Affiliation(s)
- Yuan Meng
- The Swire Institute of Marine Sciences, School of Biological Sciences, The University of Hong Kong, Hong Kong Special Administrative Region, China
| | - Zhenbin Guo
- Department of Mechanical Engineering, The Hong Kong Polytechnic University, Hong Kong Special Administrative Region, China
| | - Haimin Yao
- Department of Mechanical Engineering, The Hong Kong Polytechnic University, Hong Kong Special Administrative Region, China
| | - Kelvin W K Yeung
- Department of Orthopaedics and Traumatology, Queen Mary Hospital, The University of Hong Kong, Hong Kong Special Administrative Region, China
| | - V Thiyagarajan
- The Swire Institute of Marine Sciences, School of Biological Sciences, The University of Hong Kong, Hong Kong Special Administrative Region, China; State Key Laboratory for Marine Pollution, Hong Kong Special Administrative Region, China.
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