Improvement of High Affinity and Selectivity on Biosensors Using Genetically Engineered Phage by Binding Isotherm Screening

Neural mechanism mimetic selective electronic nose based on programmed M13 bacteriophage

The electronic nose is a reliable practical sensor device that mimics olfactory organs. Although numerous studies have demonstrated excellence in detecting various target substances with the help of ideal models, biomimetic approaches still suffer in practical realization because of the inability to mimic the signal processing performed by olfactory neural systems. Herein, we propose an electronic nose based on the programable surface chemistry of M13 bacteriophage, inspired by the neural mechanism of the mammalian olfactory system. The neural pattern separation (NPS) was devised to apply the pattern separation that operates in the memory and learning process of the brain to the electronic nose. We demonstrate an electronic nose in a portable device form, distinguishing polycyclic aromatic compounds (harmful in living environment) in an atomic-level resolution (97.5% selectivity rate) for the first time. Our results provide practical methodology and inspiration for the second-generation electronic nose development toward the performance of detection dogs (K9).

Investigation of colorimetric biosensor array based on programable surface chemistry of M13 bacteriophage towards artificial nose for volatile organic compound detection: From basic properties of the biosensor to practical application

Various threats such as explosives, drugs, environmental hormones, and spoiled food manifest themselves with the presence of volatile organic compounds (VOCs) in our environment. In order to recognize and respond to these threats early, the demand for highly sensitive and selective electronic noses is increasing. The M13 bacteriophage-based optoelectronic nose is an excellent candidate to meet all these requirements. However, the phage-based electronic nose is still in its infancy, and strategies that include a systematic approach and development are still essential. Here, we have integrated theoretical and experimental approaches to analyze the correlation between the surface chemistry of genetically engineered phage and the phage-based optoelectronic nose properties. The reactivity of the genetically engineered phage color film to some VOCs were quantitatively analyzed, and the correlation with the binding affinity value calculated by Density-functional theory (DFT) was compared. This demonstrates that phage color films have controllable reactivity through a genetic engineering. We have selected phages that are advantageous in distinguishing each VOCs in this work through hierarchical cluster analysis (HCA). The reason for this difference was verified through the optimized geometry calculated by DFT. Through this, it was confirmed that the tryptophan-based and the Histidine-based of genetically engineered phage film are important in distinguishing the VOCs (Y-hexanolactone, 2-isopropyl-4-methylthiazole, ethanol, acetone, ethyl acetate, and acetaldehyde) used in this work to evaluate the peach freshness quality. This was applied to the design of a field-applied phage-based optoelectronic nose and verified by measuring the freshness of the actual fruit.

Engineered Bacteriophages for Practical Applications

The diversity of advanced genetic engineering techniques that have become available in recent years has enabled a more precise manipulation of genes and genomes. Among these, bacteriophage genomes stand out as an interesting target due to their dependence on a host for replication, which previously complicated their manipulation, and due as well to the many possible fields in which they can be used. In this review, we highlight recent applications for which genetically modified bacteriophages are being employed: as phage therapy in medicine, animal industries and agricultural settings; as a source of new antimicrobials; as biosensors for research, health and environmental purposes; and as genetic engineering tools themselves.

Modifying Plasmonic-Field Enhancement and Resonance Characteristics of Spherical Nanoparticles on Metallic Film: Effects of Faceting Spherical Nanoparticle Morphology

A three-dimensional finite-difference time-domain study of the plasmonic structure of nanoparticles on metallic film (NPOM) is presented in this work. An introduction to nanoparticle (NP) faceting in the NPOM structure produced a variety of complex transverse cavity modes, which were labeled S11 to S13. We observed that the dominant S11 mode resonance could be tuned to the desired wavelength within a broadband range of ~800 nm, with a maximum resonance up to ~1.42 µm, as a function of NP facet width. Despite being tuned at the broad spectral range, the S11 mode demonstrated minimal decrease in its near field enhancement characteristics, which can be advantageous for surface-enhanced spectroscopy applications and device fabrication perspectives. The identification of mode order was interpreted using cross-sectional electric field profiles and three-dimensional surface charge mapping. We realized larger local field enhancement in the order of ~109, even for smaller NP diameters of 50 nm, as function of the NP faceting effect. The number of radial modes were dependent upon the combination of NP diameter and faceting length. We hope that, by exploring the sub-wavelength complex optical properties of the plasmonic structures of NPOM, a variety of exciting applications will be revealed in the fields of sensors, non-linear optics, device engineering/processing, broadband tunable plasmonic devices, near-infrared plasmonics, and surface-enhanced spectroscopy.