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Ousseini IS, Bakasso Y, Kane NA, Couderc M, Zekraoui L, Mariac C, Manicacci D, Rhoné B, Barnaud A, Berthouly-Salazar C, Assoumane A, Moussa D, Moussa T, Vigouroux Y. Myosin XI is associated with fitness and adaptation to aridity in wild pearl millet. Heredity (Edinb) 2017; 119:88-94. [PMID: 28295033 DOI: 10.1038/hdy.2017.13] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2016] [Revised: 01/09/2017] [Accepted: 01/12/2017] [Indexed: 11/09/2022] Open
Abstract
Phenotypic changes in plants can be observed along many environmental gradients and are determined by both environmental and genetic factors. The identification of alleles associated with phenotypic variations is a rapidly developing area of research. We studied the genetic basis of phenotypic variations in 11 populations of wild pearl millet (Pennisetum glaucum) on two North-South aridity gradients, one in Niger and one in Mali. Most of the 11 phenotypic traits assessed in a common garden experiment varied between the populations studied. Moreover, the size of the inflorescence, the number of flowers and aboveground dry mass co-varied positively with a decrease in rainfall. To decipher the genetic basis of these phenotypes, we used an association mapping strategy with a mixed model. We found two SNPs on the same myosin XI contig significantly associated with variations in the average number of flowers. Both the allele frequency of the two SNPs and the average number of flowers co-varied with the rainfall gradient on the two gradients. Interestingly, this gene was also a target of selection during domestication. The Myosin XI gene is thus a good candidate for fitness-related adaptation in wild populations.
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Affiliation(s)
- I S Ousseini
- Institut de Recherche pour le Développement, Montpellier, France.,Université Abdou Moumouni de Niamey, Niamey, Niger.,Université de Montpellier, Montpellier, France.,Institut Sénégalais de la Recherche Agronomique, Campus de Bel Air, Dakar, Sénégal
| | - Y Bakasso
- Université Abdou Moumouni de Niamey, Niamey, Niger
| | - N A Kane
- Institut Sénégalais de la Recherche Agronomique, Campus de Bel Air, Dakar, Sénégal.,Laboratoire Mixte International Adaptation des Plantes et Microorganismes Associés aux Stress Environnementaux (LMI LAPSE), Centre de Recherche de Bel Air, Dakar, Sénégal
| | - M Couderc
- Institut de Recherche pour le Développement, Montpellier, France
| | - L Zekraoui
- Institut de Recherche pour le Développement, Montpellier, France.,Institut Sénégalais de la Recherche Agronomique, Campus de Bel Air, Dakar, Sénégal.,Laboratoire Mixte International Adaptation des Plantes et Microorganismes Associés aux Stress Environnementaux (LMI LAPSE), Centre de Recherche de Bel Air, Dakar, Sénégal
| | - C Mariac
- Institut de Recherche pour le Développement, Montpellier, France
| | - D Manicacci
- Université Paris-Sud, UMR 0320 / UMR 8120 Génétique Quantitative et Évolution - Le Moulon, Gif-sur-Yvette, France
| | - B Rhoné
- Institut de Recherche pour le Développement, Montpellier, France.,Centre National de la Recherche Scientifique, Lyon, France
| | - A Barnaud
- Institut de Recherche pour le Développement, Montpellier, France.,Institut Sénégalais de la Recherche Agronomique, Campus de Bel Air, Dakar, Sénégal.,Laboratoire Mixte International Adaptation des Plantes et Microorganismes Associés aux Stress Environnementaux (LMI LAPSE), Centre de Recherche de Bel Air, Dakar, Sénégal
| | - C Berthouly-Salazar
- Institut de Recherche pour le Développement, Montpellier, France.,Institut Sénégalais de la Recherche Agronomique, Campus de Bel Air, Dakar, Sénégal.,Laboratoire Mixte International Adaptation des Plantes et Microorganismes Associés aux Stress Environnementaux (LMI LAPSE), Centre de Recherche de Bel Air, Dakar, Sénégal
| | - A Assoumane
- Université Abdou Moumouni de Niamey, Niamey, Niger.,Institut de Recherche pour le Développement, Niamey, Niger
| | - D Moussa
- Institut de Recherche pour le Développement, Niamey, Niger
| | - T Moussa
- Institut de Recherche pour le Développement, Niamey, Niger
| | - Y Vigouroux
- Institut de Recherche pour le Développement, Montpellier, France.,Université de Montpellier, Montpellier, France.,Laboratoire Mixte International Adaptation des Plantes et Microorganismes Associés aux Stress Environnementaux (LMI LAPSE), Centre de Recherche de Bel Air, Dakar, Sénégal
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Barnaud A, Trigueros G, McKey D, Joly HI. High outcrossing rates in fields with mixed sorghum landraces: how are landraces maintained? Heredity (Edinb) 2008; 101:445-52. [PMID: 18685567 DOI: 10.1038/hdy.2008.77] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
The effect of mating system on genetic diversity is a major theme in plant evolutionary genetics, because gene flow plays a large role in structuring the genetic variability within and among populations. Understanding crop mating systems and their consequences for gene flow can aid in managing agricultural systems and conserving genetic resources. We evaluated the extent of pollen flow, its links with farming practices and its impact on the dynamics of diversity of sorghum in fields of Duupa farmers in Cameroon. Duupa farmers grow numerous landraces mixed in a field, a practice that favours extensive pollen flow. We estimated parameters of the mating system of five landraces representative of the genetic diversity cultivated in the study site, using a direct method based on progeny array. The multilocus outcrossing rate calculated from all progenies was 18% and ranged from 0 to 73% among progenies. Outcrossing rates varied greatly among landraces, from 5 to 40%. Our results also showed that individual maternal plants were usually pollinated by more than eight pollen donors, except for one landrace (three pollen donors). Although the biological traits of sorghum (inflorescence morphology, floral traits, phenology) and the spatial planting practices of Duupa farmers led to extensive pollen flow among landraces, selection exerted by farmers appears to be a key parameter affecting the fate of new genetic combinations from outcrossing events. Because both natural and human-mediated factors shape evolution in crop populations, understanding evolutionary processes and designing in situ conservation measures requires that biologists and anthropologists work together.
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Affiliation(s)
- A Barnaud
- CIRAD, UMR 5175-CEFE (Centre d'Ecologie Fonctionnelle et Evolutive), Montpellier, France.
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Audemard C, Le RF, Barnaud A, Collins C, Sautour B, Sauria PG, de MX, Coustau C, Combes C, Berthe F. Needle in a haystack: involvement of the copepod PARACARTIA grani in the life-cycle of the oyster pathogen Marteilia refringens. Parasitology 2002; 124:315-23. [PMID: 11922433 DOI: 10.1017/s0031182001001111] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Marteilia refringens is a major pathogen of the European flat oyster, Ostrea edulis Linnaeus. Since its description, the life-cycle of this protozoan parasite has eluded discovery. Attempts to infect oysters experimentally have been unsuccessful and led to the hypothesis of a complex life-cycle involving several hosts. Knowledge of this life-cycle is of central importance in order to manage oyster disease. However, the exploration of M. refringens life-cycle has been previously limited by the detection tools available and the tremendous number of species to be screened in enzootic areas. In this study, these two restrictions were circumvented by the use of both molecular detection tools and a mesocosm with low biodiversity. Screening of the entire fauna of the pond for M. refringens DNA was systematically undertaken using PCR. Here, we show that the copepod Paracartia (Acartia) grani is a host of M. refringens. Not only was DNA of M. refringens consistently detected in P. grani but also the presence of the parasite in the ovarian tissues was demonstrated using in situ hybridization. Finally, successful experimental transmissions provided evidence that P. grani can be infected from infected flat oysters.
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Affiliation(s)
- C Audemard
- Laboratoire Génétique et Pathologie, IFREMER, La Tremblade, France
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Morales-Betoulle ME, Contamin H, Barnaud A, Talarmin A. Use of the squirrel monkey Saimiri sciureus to optimize serological tests for diagnosis of Bunyavirus infection in humans. J Virol Methods 2001; 93:57-64. [PMID: 11311344 DOI: 10.1016/s0166-0934(00)00295-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
Several arthropod-borne viruses of the large Bunyaviridae virus family have been isolated in South America. There are few data about the incidence of these viruses in man, except for the Oropuche virus. Since haemagglutination inhibition tests are difficult to perform, only enzyme-linked immunosorbent assays (ELISAs) are used. Nevertheless, positive controls are necessary for ELISA, and infected humans are rare. Squirrel monkeys (Saimiri sciureus) were therefore infected experimentally to assess their value as positive controls in such assays. The kinetics of viraemia and of antibody responses after infection with eight Bunyaviruses present in the Amazonian forest were studied. No viraemia was seen in most cases, but, with every virus studied, immunoglobulin (Ig)M and IgG antibody responses were observed, beginning between days 5 and 14 after infection for IgM and days 14--18 after infection for IgG. This model thus provides reliable positive controls for ELISAs in humans. Their availability will allow determination of the seroprevalence of Bunyaviruses in the human population of French Guiana.
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Affiliation(s)
- M E Morales-Betoulle
- Centre National de Référence pour la Surveillance des Arboviroses pour la Région Antilles--Guyane, Institut Pasteur de Guyane, BP 6010, 97306 Cayenne Cedex, French Guiana
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Audemard C, Barnaud A, Collins CM, Le Roux F, Sauriau PG, Coustau C, Blachier P, Berthe FC. Claire ponds as an experimental model for Marteilia refringens life-cycle studies: new perspectives. J Exp Mar Biol Ecol 2001; 257:87-108. [PMID: 11165301 DOI: 10.1016/s0022-0981(00)00330-0] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Since its first description, the paramyxean parasite Marteilia refringens (Grizel et al.) has been recognised as a significant pathogen of the European flat oyster Ostrea edulis L. The existence of a complex life-cycle involving several hosts was postulated early on by many authors, although it remains unsolved. Recent developments in the DNA-based diagnosis of M. refringens provides new prospects for the detection of the parasite in potential hosts. However, this screening remains impeded by the number of species living in the vicinity of oyster beds. We report here on the use of semi-closed oyster ponds (so called 'claire' in Marennes-Oléron Bay) as a study model for the life-cycle of M. refringens. Claires are located in an endemic area for M. refringens and transmission of the disease to healthy oysters has been shown to be effective during the course of this study. The environmental characteristics of the claires strongly limit the number of species compared with intertidal areas and oyster beds. Consequently, extensive sampling of a limited number of species cohabiting with oysters was possible. These were preserved for future screening of M. refringens. The experimental model should bring new insights to the life-cycle of M. refringens, as it enables us to propose new conceptual schemes of M. refringens transmission. The role of species as potential hosts is discussed regarding their biology and geographical distribution.
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Affiliation(s)
- C Audemard
- Laboratoire Génétique et Pathologie, IFREMER, BP 133, 17390, La Tremblade, France
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Audemard C, Barnaud A, Berthe F. DNA Probes As Potential Tools for the Detection of Marteilia refringens. Mar Biotechnol (NY) 1999; 1:588-597. [PMID: 10612684 DOI: 10.1007/pl00011814] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Since its first description, the paramyxean parasite Marteilia refringens has been recognized as a significant pathogen of bivalve mollusks. The existence of a complex life cycle was postulated by many authors. Here we report the development of DNA-based detection assays as powerful tools to elucidate the Marteilia refringens life cycle. After alignment of the Marteilia refringens ribosomal DNA small subunit sequence with those of various eukaryotic organisms, polymerase chain reaction primers were designed. Specific primers were used to amplify DNA extracted from purified Marteilia refringens and infected hosts. The specificity of amplified fragments was confirmed by Southern blotting with an oligoprobe. For in situ hybridization, four probes were tested for specific detection of 18S rRNA isolated from Marteilia refringens and other eukaryotic cells by Northern blotting. The most specific probe, Smart 2, was successfully used to detect Marteilia refringens by in situ hybridization in infected oysters and mussels.
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Barnaud A. The first college of medical illustration in Paris (France)--two years' experience. J Audiov Media Med 1994; 17:161-4. [PMID: 7636121 DOI: 10.3109/17453059409087702] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
In September 1992, the first College Programme of Medical Illustration in Paris began at the Ecole Supérieure des Arts et Industries Graphiques Estienne. There had previously been only one College of Medical Illustration in France-founded in 1969 in Strasbourg. Paris, at the centre of the French scientific and medical environment, had only a few medical artists, the situation was therefore propitious to the creation of the College. How could a freelance medical artist establish a medical illustration college in a National Arts School? This is the account of the School's first two years' experience, in which a number of the problems faced by both students and tutors are discussed.
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Affiliation(s)
- A Barnaud
- Ecole Supérieure des Arts et Industries Graphiques Estienne, Paris, France
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