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Saad H, Eraky M, El-Tahe A, Riad M, Sharaf K, Baz A, Farid M, Arafa A. A THOROUGH STUDY AND META-ANALYSIS OF THE PROGNOSTIC RELEVANCE OF THE C-REACTIVE-ALBUMIN RATIO IN ACUTE PANCREATITIS. Georgian Med News 2023:111-118. [PMID: 38096527] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
Although most cases of acute pancreatitis (AP) are minor, severe cases are associated with a substantial risk of death. Acute pancreatitis (AP) is a common illness. Therefore, it is critical to assess AP severity as soon as possible. This review aimed to ascertain the predictive significance of the CRP to albumin ratio in individuals with AP. We searched PubMed, Science Direct, and Cochrane Library electronic databases Until January 2023. Studies that reported the CRP/alb ratio at admission and its relationship to the severity or death of patients with AP were included. Using a random-effects model, we computed the pooled mean difference (MD) and 95% confidence interval (CI). The quality of the included studies was evaluated using the Newcastle-Ottawa scale. This meta-analysis combined data from six trials with a total of 2244 patients. Upon admission, the CRP/alb ratio was higher in patients with severe AP than in those with mild to moderate AP (pooled MD:3.59; 95% CI:2.51-4.68; p<0.00001). Additionally, non-survivor AP patients had a substantially higher CRP/alb ratio than survivor AP patients (pooled MD:2.12; 95% CI:0.43-3.8; p<0.01). Individuals with AP may benefit from a high CRP/ALB ratio as a preliminary indicator of poor prognosis.
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Affiliation(s)
- H Saad
- 1Surgical Department, Zagazig University, Sharkia, Egypt
| | - M Eraky
- 1Surgical Department, Zagazig University, Sharkia, Egypt
| | - A El-Tahe
- 1Surgical Department, Zagazig University, Sharkia, Egypt
| | - M Riad
- 1Surgical Department, Zagazig University, Sharkia, Egypt
| | - Kh Sharaf
- 1Surgical Department, Zagazig University, Sharkia, Egypt
| | - A Baz
- 2Surgical Department, Alahrar Teaching Hospital, Sharkia, Egypt
| | - M Farid
- 1Surgical Department, Zagazig University, Sharkia, Egypt
| | - A Arafa
- 1Surgical Department, Zagazig University, Sharkia, Egypt
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Horjeti E, Kim Y, Arafa A, Sutera P, Phillips R, Song D, Kiess AP, Tran PT, Park SS, Lucien-Matteoni F. PSMA-Positive Extracellular Vesicles Predict Disease Recurrence in Oligometastatic Castration-Sensitive Prostate Cancer Treated with Stereotactic Ablative Radiotherapy: Analysis of the ORIOLE trial. Int J Radiat Oncol Biol Phys 2023; 117:S36. [PMID: 37784483 DOI: 10.1016/j.ijrobp.2023.06.303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/04/2023]
Abstract
PURPOSE/OBJECTIVE(S) Stereotactic ablative radiation therapy (SABR) can prolong progression free survival in oligometastatic prostate cancer (omPC) patients. However, predictive tools to identify those who will benefit from SABR are necessary. Our group was the first to demonstrate that plasma levels of prostate cancer-derived extracellular vesicles (ProstEVs) correlate with tumor burden and predict disease progression in omPC after SABR. Herein, we conducted a blinded validation study using plasma samples from the ORIOLE randomized phase 2 clinical trial in castration-sensitive patients. MATERIALS/METHODS Plasma samples from 46 omPC patients from the Baltimore ORIOLE trial: a 2:1 ratio randomization to SABR vs observation (NCT02680587). Baseline PSMA+ ProstEV levels were measured by standardized and calibrated nanoscale flow cytometry using fluorescent PSMA antibodies. Median ProstEV levels was used as cut-off for low and high levels. Kaplan-Meier curves and Cox regression models were used to determine the association of ProstEV levels with clinical outcomes [PSA progression-free survival (psaPFS) and radiographic distant progression free survival (rPFS)]. RESULTS No association was observed between number of metastatic lesions or baseline PSA and plasma ProstEV levels. The rPFS for patients treated with SABR was 29.6 months. The rPFS for patients treated with SABR with high and low ProstEV levels were 11.1 months and 36 months, respectively (Hazard Ratio: 2.85; 95% CI, 1.01-7.48; P = 0.02). The psaPFS for patients treated with SABR was 11.9 months. The psaPFS for patients with high and low ProstEV levels were 5.9 months and 24.3 months, respectively (HR: 2.44; 95% CI, 1.00-5.94; P = 0.03). CONCLUSION ProstEVs is the first blood biomarker of tumor burden that can prognosticate the risk of disease recurrence in omPC patients treated with SABR. While biomarker-guided trials are warranted, our validation study strengthens the clinical value of ProstEVs for personalized radiation therapy.
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Affiliation(s)
- E Horjeti
- Department of Urology, Mayo Clinic, Rochester, MN
| | - Y Kim
- Department of Urology, Mayo Clinic, Rochester, MN
| | - A Arafa
- University of Minnesota, Minneapolis, MN
| | - P Sutera
- Department of Radiation Oncology and Molecular Radiation Sciences, Johns Hopkins Medicine, Baltimore, MD
| | - R Phillips
- Department of Radiation Oncology, Mayo Clinic, Rochester, MN
| | - D Song
- Department of Radiation Oncology and Molecular Radiation Sciences, Johns Hopkins University School of Medicine, Baltimore, MD
| | - A P Kiess
- Department of Radiation Oncology and Molecular Radiation Sciences, Johns Hopkins University School of Medicine, Baltimore, MD
| | - P T Tran
- Department of Radiation Oncology, University of Maryland School of Medicine, Baltimore, MD
| | - S S Park
- Department of Radiation Oncology, Mayo Clinic, Rochester, MN
| | - F Lucien-Matteoni
- Department of Urology, Mayo Clinic, Rochester, MN; Department of Immunology, Mayo Clinic, Rochester, MN
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Arafa A, Jain A, Humphrey B, Froelich J, Antonarakis ES. The impact of F-18 PSMA PET imaging on clinical decision-making in prostate cancer across disease states. J Clin Oncol 2023. [DOI: 10.1200/jco.2023.41.6_suppl.63] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/15/2023] Open
Abstract
63 Background: Piflufolastat F-18 (18F-DCFPyL) PSMA PET imaging was recently approved by the FDA for initial staging, biochemical recurrence (BCR), and restaging of metastatic prostate cancer. Given that the PSMA PET is a next-generation novel imaging modality that carries a higher sensitivity for detecting metastatic disease compared with conventional imaging, we aimed to assess how its integration into clinical care may have impacted the management of patients. Methods: We identified 236 patients who underwent an 18F-DCFPyL PET scan at the University of Minnesota between August 2021 to June 2022. The median PSA at the time of imaging was 1.75 ng/ml (range, 0.02 - 3740 ng/ml). All PSMA PET scans were evaluated by an experienced nuclear medicine physician. Descriptive statistics were used to analyze its impact on the clinical care of 158 patients: 22 for initial staging, 110 with biochemical recurrence, and 26 patients with known metastatic disease. The remaining 78 patients had no information available to assess clinical utility. Results: Metastatic PSMA-avid lesions were detected in 152/236 (64.4%) patients. In patients undergoing initial staging of high-risk prostate cancer, 17/40 (42.5%) patients had metastatic lesions outside the prostate involving 10 regional and 5 non-regional lymph nodes, 1 visceral site, and 10 bone metastases. 17/40 (42.5%) of the scans were unremarkable. 6/40 (15%) had equivocal scan results. For the patients with available clinical information, 12/22 (54.5%) had a change in their treatment plan post-DCFPyL, while 10/22 (45.5%) had no change. In the biochemical recurrence cohort, 93/151 (61.6%) had positive lesions: 28 local recurrences, 47 regional and 22 non-regional lymph nodes, 5 visceral and 28 bone metastases. Equivocal and negative scans accounted for 13/151 (8.6%) and 45/151 (29.8%) cases, respectively. 44/110 (40%) of the patients with clinical information had a change in their treatment plan, while the plan did not change for 66/110 (60%) cases. In patients with known metastatic prostate cancer undergoing restaging, 42/45 (93.3%) had DCFPyL-positive lesions; 12 local recurrences, 20 regional and 16 non-regional, 9 visceral, and 29 bone metastases. Equivocal and negative scans accounted for 2/45 (4.4%) and 1/45 (2.2) of cases, respectively. Only 11/26 (42.3%) of those with clinical information had their tentative treatment plan adjusted post-DCFPyL. No change in the treatment plan was made in 15/26 (57.7%) cases. Conclusions: Integration of the F-18 PSMA PET imaging substantially impacted clinical decision-making, especially for initial staging of high-risk localized disease (treatment change in 55%) and for biochemical recurrence (treatment change in 40%). It remains to be seen if this would translate into superior survival outcomes.
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Affiliation(s)
- Ali Arafa
- University of MInnesota, Minneapolis, MN
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Kim Y, van der Pol E, Arafa A, Thapa I, J Britton C, Kosti J, Song S, Joshi VB, M Erickson R, Ali H, Lucien F. Calibration and standardization of extracellular vesicle measurements by flow cytometry for translational prostate cancer research. Nanoscale 2022; 14:9781-9795. [PMID: 35770741 DOI: 10.1039/d2nr01160c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Extracellular vesicles (EVs) are microscopic particles released naturally in biofluids by all cell types. Since EVs inherits genomic and proteomic patterns from the cell of origin, they are emerging as promising liquid biomarkers for human diseases. Flow cytometry is a popular method that is able to detect, characterize and determine the concentration of EVs with minimal sample preparation. However, the limited awareness of the scientific community to utilize standardization and calibration methods of flow cytometers is an important roadblock for data reproducibility and inter-laboratory comparison. A significant collaborative effort by the Extracellular Vesicle Flow Cytometry Working Group has led to the development of guidelines and best practices for using flow cytometry and reporting data in a way to improve rigor and reproducibility in EV research. At first look, standardization and calibration of flow cytometry for EV detection may seem burdensome and technically challenging for non-academic laboratories with limited technical training and knowledge in EV flow cytometry. In this study, we build on prior research efforts and provide a systematic approach to evaluate the performance of a high sensitivity flow cytometer (herein Apogee A60-Micro Plus) and fine-tune settings to improve detection sensitivity for EVs. We performed calibration of our flow cytometer to generate data with comparable units (nanometers, MESF). Finally, we applied our optimized protocol to measure the concentrations of prostate-derived EVs in healthy individuals and prostate cancer patients. In conclusion, our proof-of-feasibility study can serve as a scientific and technical framework for other groups motivated in using flow cytometry for EV research.
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Affiliation(s)
- Yohan Kim
- Department of Urology, Mayo Clinic, Guggenheim 4-97, 200 1st Street SW, Rochester, MN, 55901, USA.
| | - Edwin van der Pol
- Department of Biomedical Engineering and Physics, Amsterdam University Medical Center, Amsterdam, The Netherlands
- Laboratory Experimental Clinical Chemistry, Amsterdam University, Medical Center, Amsterdam, The Netherlands
- Vesicle Observation Center, Amsterdam University Medical Center, Amsterdam, The Netherlands
| | - Ali Arafa
- Department of Urology, Mayo Clinic, Guggenheim 4-97, 200 1st Street SW, Rochester, MN, 55901, USA.
| | - Ishwor Thapa
- College of Information Science and Technology, University of Nebraska at Omaha, USA
| | - Cameron J Britton
- Department of Urology, Mayo Clinic, Guggenheim 4-97, 200 1st Street SW, Rochester, MN, 55901, USA.
| | - Jorgena Kosti
- Department of Urology, Mayo Clinic, Guggenheim 4-97, 200 1st Street SW, Rochester, MN, 55901, USA.
| | - Siyang Song
- Department of Urology, Mayo Clinic, Guggenheim 4-97, 200 1st Street SW, Rochester, MN, 55901, USA.
| | - Vidhu B Joshi
- Department of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, USA
| | - Ree M Erickson
- Department of Urology, Mayo Clinic, Guggenheim 4-97, 200 1st Street SW, Rochester, MN, 55901, USA.
| | - Hesham Ali
- College of Information Science and Technology, University of Nebraska at Omaha, USA
| | - Fabrice Lucien
- Department of Urology, Mayo Clinic, Guggenheim 4-97, 200 1st Street SW, Rochester, MN, 55901, USA.
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Arafa A, Eshak ES, Shirai K, Cadar D, Iso H, Tsuji T, Kanamori S, Kondo K. Impact of various intensities and frequencies of non-occupational physical activity on the risk of dementia among physically independent older adults: the Japan Gerontological Evaluation Study. Public Health 2021; 196:204-210. [PMID: 34274694 DOI: 10.1016/j.puhe.2021.05.022] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Revised: 05/13/2021] [Accepted: 05/20/2021] [Indexed: 11/28/2022]
Abstract
OBJECTIVES The aim of this study was to investigate the association between different intensities and frequencies of non-occupational physical activity (PA) and the risk of dementia among Japanese older adults. STUDY DESIGN This was a prospective cohort study. METHODS A total of 2194 participants aged ≥65 years from the Japan Gerontological Evaluation Study were followed up between 2010 and 2016. The standardised dementia scale of the long-term care insurance system was used to identify incident dementia, whereas non-occupational PA (<2 or ≥2 times/week on each intensity: light, moderate and vigorous) was assessed using a questionnaire. Cox regression was used to compute the hazard ratios (HRs) and 95% confidence intervals (CIs) for incident dementia. RESULTS After adjustment for sociodemographic and medical characteristics, the following frequencies and intensities of non-occupational PA, compared with no non-occupational PA at all, were associated with a reduced risk of dementia: light PA ≥2 times/week (HR = 0.61, 95% CI: 0.38-0.97), moderate PA <2 times/week (HR = 0.46, 95% CI: 0.28-0.76), moderate PA ≥2 times/week (HR = 0.57, 95% CI: 0.36-0.91), vigorous PA <2 times/week (HR = 0.40, 95% CI: 0.21-0.74) and vigorous PA ≥2 times/week (HR = 0.29, 95% CI: 0.15-0.57). In the sex-specific analysis, moderate PA <2 times/week and vigorous PA ≥2 times/week were associated with a reduced risk of dementia in men, whereas light and moderate PA ≥2 times/week and all frequencies of vigorous PA were associated with a reduced risk of dementia in women. CONCLUSIONS Practicing non-occupational PA was associated with a reduced risk of dementia among Japanese older adults.
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Affiliation(s)
- A Arafa
- Public Health, Department of Social Medicine, Osaka University Graduate School of Medicine, Osaka, Japan; Department of Public Health, Faculty of Medicine, Beni-Suef University, Beni-Suef, Egypt
| | - E S Eshak
- Public Health, Department of Social Medicine, Osaka University Graduate School of Medicine, Osaka, Japan; Department of Public Health, Faculty of Medicine, Minia University, El-Minia, Egypt
| | - K Shirai
- Public Health, Department of Social Medicine, Osaka University Graduate School of Medicine, Osaka, Japan
| | - D Cadar
- Department of Behavioral Science and Health, University College London, London, UK
| | - H Iso
- Public Health, Department of Social Medicine, Osaka University Graduate School of Medicine, Osaka, Japan.
| | - T Tsuji
- Faculty of Health and Sport Sciences, University of Tsukuba, Tokyo, Japan
| | - S Kanamori
- Teikyo University Graduate School of Public Health, Tokyo, Japan; Department of Preventive Medicine and Public Health, Tokyo Medical University, Tokyo, Japan
| | - K Kondo
- Department of Social Preventive Medical Sciences, Center for Preventive Medical Sciences, Chiba University, Chiba, Japan; Center for Gerontology and Social Science, National Center for Geriatrics and Gerontology, Aichi, Japan
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Dave CN, Kohn TP, Patel HD, Arafa A, Burnett AL. Inflatable penile prosthesis outcomes after pelvic radiation. Can J Urol 2020; 27:10382-10387. [PMID: 33049191] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
UNLABELLED INTRODUCTION Few studies have compared surgical outcomes after 3-piece inflatable penile prosthesis (IPP) surgery in patients exposed to pelvic radiation therapy (RT) compared to a radiation naïve control group. MATERIALS AND METHODS A total of 715 consecutive patients underwent 3-piece IPP placement between 2007-2018. There were 101 men exposed to pelvic RT before or after IPP for a variety of malignancies and 153 men met inclusion criteria for the control group, which included men undergoing IPP surgery with a history of radical prostatectomy but no exposure to pelvic RT. RESULTS Patients in the RT group had a higher body mass index (kg/m²) (28.7 versus 27.8, p = 0.003) and higher Charlson co-morbidity index score (6 versus 5; p < 0.001). At a median follow up of 5 years (IQR 2-8 years), there was an 18.4% surgical complication rate in the radiation group compared to 11.5% in the control group, though this was not statistically significant (p = 0.141). Timing of radiation, prior artificial urinary sphincter (AUS) status, co-implantation of an AUS, and brand of prosthesis were not associated with increased rate of complications. On multivariable logistic regression analysis, exposure to RT was not significantly associated with increased risks of complications (OR: 1.31; CI 0.55-3.12). CONCLUSIONS This study shows no significant increase in risk of surgical complication in patients exposed to pelvic RT and supports the use of IPP in men with a history of RT and refractory erectile dysfunction.
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Affiliation(s)
- Chirag N Dave
- Johns Hopkins University School of Medicine, Brady Urological Institute, Baltimore, Maryland, USA
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Azab AA, Arafa A, Selim A, Hassan MK, Bazid AI, Sultan AH, Hussein HA, Abdelwhab EM. Pathogenicity of the Egyptian A/H5N1 avian influenza viruses in chickens. Microb Pathog 2017; 110:471-476. [PMID: 28739438 DOI: 10.1016/j.micpath.2017.07.026] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2016] [Revised: 06/15/2017] [Accepted: 07/17/2017] [Indexed: 12/13/2022]
Abstract
Long-term circulation of highly pathogenic avian influenza H5N1 viruses of clade 2.2.1 in Egyptian poultry since February 2006 resulted in the evolution of two distinct clades: 2.2.1.1 represents antigenic-drift variants isolated from vaccinated poultry and 2.2.1.2 that caused the newest upsurge in birds and humans in 2014/2015. In the present study, nine isolates were collected from chickens, ducks and turkeys representing the commercial and backyard sectors during the period 2009-2015. The subtyping was confirmed by hemagglutination inhibition (HI) test, RT-qPCR and sequence analysis. The Mean Death Time (MDT) and Intravenous Pathogenicity Index (IVPI) for all isolates were determined. Sequence analysis of the HA gene sequences of these viruses revealed that two viruses belonged to clade 2.2.1.1 and the rest were clade 2.2.1.2. Antigenic characterisation of the viruses supported the results of the phylogenetic analysis. The MDT of the isolates ranged from 18 to 72 h and the IVPI values ranged from 2.3 to 2.9; viruses of the 2.2.1.1 clade were less virulent than those of the 2.2.1.2 clade. In addition, clade-specific polymorphism in the HA cleavage site was observed. These findings indicate the high and variable pathogenicity of H5N1 viruses of different clades and host-origin in Egypt. The upsurge of outbreaks in poultry in 2014/2015 was probably not due to a shift in virulence from earlier viruses.
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Affiliation(s)
- A A Azab
- Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, P.O. Box 264-Dokki, Giza 12618, Egypt.
| | - A Arafa
- Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, P.O. Box 264-Dokki, Giza 12618, Egypt
| | - A Selim
- Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, P.O. Box 264-Dokki, Giza 12618, Egypt
| | - M K Hassan
- Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, P.O. Box 264-Dokki, Giza 12618, Egypt
| | - A I Bazid
- Faculty of Veterinary Medicine, Sadat City University, Al-Menofia, Egypt
| | - A H Sultan
- Faculty of Veterinary Medicine, Sadat City University, Al-Menofia, Egypt
| | - H A Hussein
- Faculty of Veterinary Medicine, Cairo University, Giza 12211, Egypt
| | - E M Abdelwhab
- Reference Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, P.O. Box 264-Dokki, Giza 12618, Egypt; Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, D-17493 Greifswald-Insel Riems, Germany
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Arafa A, Saleh HI, Ashoub N. Loss of flow Accident (LOFA) analyses using LabView-based NRR simulator. KERNTECHNIK 2016. [DOI: 10.3139/124.110594] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
AbstractThis paper presents a generic Loss of Flow Accident (LOFA) scenario module which is integrated in the LabView-based simulator to imitate a Nuclear Research Reactor (NRR) behavior for different user defined LOFA scenarios. It also provides analyses of a LOFA of a single fuel channel and its impact on operational transactions and on the behavior of the reactor. The generic LOFA scenario module includes graphs needed to clarify the effects of the LOFA under study. Furthermore, the percentage of the loss of mass flow rate, the mode of flow reduction and the start time and transient time of LOFA are user defined to add flexibility to the LOFA scenarios. The objective of integrating such generic LOFA module is to be able to deal with such incidents and avoid their significant effects. It is also useful in the development of expertise in this area and reducing the operator training and simulations costs. The results of the implemented generic LOFA module agree well with that of COBRA-IIIC code and the earlier guidebook for this series of transients.
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Affiliation(s)
- A. Arafa
- 1Lecturer of computer and system engineering at Radiation Engineering Department, National Center for Radiation Research and Technology (NCRRT), Atomic Energy Authority, 3 Ahmed Elzomor st. Nasr city, Cairo, Egypt, E-mail:
| | - H. I. Saleh
- 2Professor of electronics engineering at Radiation Engineering Department, National Center for Radiation Research and Technology (NCRRT), Atomic Energy Authority, 3 Ahmed Elzomor st. Nasr city, Cairo, Egypt, E-mail:
| | - N. Ashoub
- 3Professor of theoretical Reactor Physics at Reactor Physics Department, Nuclear Research Center, Atomic Energy Authority, 3 Ahmed Elzomor st. Nasr city, Cairo, Egypt, E-mail:
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Abdelwhab EM, Hassan MK, Abdel-Moneim AS, Naguib MM, Mostafa A, Hussein ITM, Arafa A, Erfan AM, Kilany WH, Agour MG, El-Kanawati Z, Hussein HA, Selim AA, Kholousy S, El-Naggar H, El-Zoghby EF, Samy A, Iqbal M, Eid A, Ibraheem EM, Pleschka S, Veits J, Nasef SA, Beer M, Mettenleiter TC, Grund C, Ali MM, Harder TC, Hafez HM. Introduction and enzootic of A/H5N1 in Egypt: Virus evolution, pathogenicity and vaccine efficacy ten years on. Infect Genet Evol 2016; 40:80-90. [PMID: 26917362 DOI: 10.1016/j.meegid.2016.02.023] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2015] [Revised: 02/18/2016] [Accepted: 02/19/2016] [Indexed: 12/09/2022]
Abstract
It is almost a decade since the highly pathogenic H5N1 avian influenza virus (A/H5N1) of clade 2.2.1 was introduced to Egypt in 2005, most likely, via wild birds; marking the longest endemic status of influenza viruses in poultry outside Asia. The endemic A/H5N1 in Egypt still compromises the poultry industry, poses serious hazards to public health and threatens to become potentially pandemic. The control strategies adopted for A/H5N1 in Egyptian poultry using diverse vaccines in commercialized poultry neither eliminated the virus nor did they decrease its evolutionary rate. Several virus clades have evolved, a few of them disappeared and others prevailed. Disparate evolutionary traits in both birds and humans were manifested by accumulation of clade-specific mutations across viral genomes driven by a variety of selection pressures. Viruses in vaccinated poultry populations displayed higher mutation rates at the immunogenic epitopes, promoting viral escape and reducing vaccine efficiency. On the other hand, viruses isolated from humans displayed changes in the receptor binding domain, which increased the viral affinity to bind to human-type glycan receptors. Moreover, viral pathogenicity exhibited several patterns in different hosts. This review aims to provide an overview of the viral evolution, pathogenicity and vaccine efficacy of A/H5N1 in Egypt during the last ten years.
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Affiliation(s)
- E M Abdelwhab
- Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, D-17493 Greifswald-Insel Riems, Germany; National Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Dokki, Giza 12618, Egypt
| | - M K Hassan
- National Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Dokki, Giza 12618, Egypt
| | - A S Abdel-Moneim
- Virology Department, Faculty of Veterinary Medicine, Beni-Suef University, Beni-Suef 62511, Egypt; Microbiology Department, Virology Division, College of Medicine, Taif University, Al-Taif 21944, Saudi Arabia
| | - M M Naguib
- Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, D-17493 Greifswald-Insel Riems, Germany; National Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Dokki, Giza 12618, Egypt
| | - A Mostafa
- Center of Scientific Excellence for Influenza Viruses, National Research Centre (NRC), Dokki, Giza 12311, Egypt; Institute of Medical Virology, Justus Liebig University Giessen, Schubertstrasse 81, Giessen 35392, Germany
| | - I T M Hussein
- Massachusetts Institute of Technology, Cambridge, MA 02139, United States
| | - A Arafa
- National Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Dokki, Giza 12618, Egypt
| | - A M Erfan
- National Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Dokki, Giza 12618, Egypt
| | - W H Kilany
- National Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Dokki, Giza 12618, Egypt
| | - M G Agour
- National Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Dokki, Giza 12618, Egypt; Animal Health Research Institute, Dokki, 12618 Giza, Egypt
| | - Z El-Kanawati
- National Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Dokki, Giza 12618, Egypt
| | - H A Hussein
- Department of Virology, Faculty of Veterinary Medicine, Cairo University, Giza 12211, Egypt
| | - A A Selim
- National Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Dokki, Giza 12618, Egypt
| | - S Kholousy
- National Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Dokki, Giza 12618, Egypt
| | - H El-Naggar
- Veterinary Serum and Vaccine Research Institute, Abbasia, El-Sekka El-Beida St., PO Box 131, Cairo 11381, Egypt
| | - E F El-Zoghby
- National Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Dokki, Giza 12618, Egypt
| | - A Samy
- National Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Dokki, Giza 12618, Egypt
| | - M Iqbal
- Avian Influenza Group, The Pirbright Institute, Ash Road, Pirbright, Woking GU24 0NF, United Kingdom
| | - A Eid
- Department of Avian and Rabbit Medicine, Faculty of Veterinary Medicine, Zagazig University, Zagazig, Egypt
| | - E M Ibraheem
- Animal Health Research Institute, Dokki, 12618 Giza, Egypt
| | - S Pleschka
- Institute of Medical Virology, Justus Liebig University Giessen, Schubertstrasse 81, Giessen 35392, Germany
| | - J Veits
- Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, D-17493 Greifswald-Insel Riems, Germany
| | - S A Nasef
- National Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Dokki, Giza 12618, Egypt
| | - M Beer
- Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, D-17493 Greifswald-Insel Riems, Germany
| | - T C Mettenleiter
- Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, D-17493 Greifswald-Insel Riems, Germany
| | - C Grund
- Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, D-17493 Greifswald-Insel Riems, Germany
| | - M M Ali
- National Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Dokki, Giza 12618, Egypt; Animal Health Research Institute, Dokki, 12618 Giza, Egypt
| | - T C Harder
- Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, D-17493 Greifswald-Insel Riems, Germany
| | - H M Hafez
- Institute of Poultry Diseases, Freie Universität Berlin, Königsweg 63, 14163 Berlin, Germany.
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10
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ElMasry I, Elshiekh H, Abdlenabi A, Saad A, Arafa A, Fasina FO, Lubroth J, Jobre YM. Avian Influenza H5N1 Surveillance and its Dynamics in Poultry in Live Bird Markets, Egypt. Transbound Emerg Dis 2015; 64:805-814. [DOI: 10.1111/tbed.12440] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2015] [Indexed: 11/27/2022]
Affiliation(s)
- I. ElMasry
- Emergency Center for Transboundary Animal Diseases (ECTAD) Food and Agriculture Organization of the United Nations (FAO) Giza Egypt
| | - H. Elshiekh
- General Organizations for Veterinary Services Ministry of Agriculture and Land Reclamation Giza Egypt
| | - A. Abdlenabi
- General Organizations for Veterinary Services Ministry of Agriculture and Land Reclamation Giza Egypt
| | - A. Saad
- Emergency Center for Transboundary Animal Diseases (ECTAD) Food and Agriculture Organization of the United Nations (FAO) Giza Egypt
| | - A. Arafa
- Emergency Center for Transboundary Animal Diseases (ECTAD) Food and Agriculture Organization of the United Nations (FAO) Giza Egypt
| | - F. O. Fasina
- Department of Production Animal Studies Faculty of Veterinary Science University of Pretoria, Onderstepoort Pretoria South Africa
| | - J. Lubroth
- Food and Agriculture Organization (FAO) Rome Italy
| | - Y. M. Jobre
- Emergency Center for Transboundary Animal Diseases (ECTAD) Food and Agriculture Organization of the United Nations (FAO) Giza Egypt
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11
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Abstract
AbstractThis paper illustrates the neutronic and thermal hydraulic models that were implemented in the nuclear research reactor simulator based on LabVIEW. It also describes the system and transient analysis of the simulator that takes into consideration the temperature effects and poisoning. This simulator is designed to be a multi-purpose in which the operator could understand the effects of the input parameters on the reactor. A designer can study different solutions for virtual reactor accident scenarios. The main features of the simulator are the flexibility to design and maintain the interface and the ability to redesign and remodel the reactor core engine. The developed reactor simulator permits to acquire hands-on the experience of the physics and technology of nuclear reactors including reactivity control, thermodynamics, technology design and safety system design. This simulator can be easily customizable and upgradable and new opportunities for collaboration between academic groups could be conducted.
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Affiliation(s)
- A. Arafa
- 1PhD of computer and system engineering at Radiation Engineering Department, NCRRT, E.A.E.A., Atomic Energy Authority, 3 Ahmed Elzomor st. Nasr city, Cairo, Egypt, E-Mail:
| | - H. I. Saleh
- 2Associated Professor of electronics engineering at Radiation Engineering Department, NCRRT, E.A.E.A., Atomic Energy Authority, 3 Ahmed Elzomor st. Nasr city, Cairo, Egypt, E-Mail:
| | - N. Ashoub
- 3Professor of theoretical Reactor Physicsat Reactor Physics Department, Nuclear Research Center, E.A.E.A., Atomic Energy Authority, 3 Ahmed Elzomor st. Nasr city, Cairo, Egypt, E-Mail:
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12
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Osman KM, Abd El-Razik KA, Marie HSH, Arafa A. Relevance of biofilm formation and virulence of different species of coagulase-negative staphylococci to public health. Eur J Clin Microbiol Infect Dis 2015; 34:2009-16. [DOI: 10.1007/s10096-015-2445-3] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2015] [Accepted: 06/29/2015] [Indexed: 11/29/2022]
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13
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Abstract
Abstract
This paper introduces the development of a research reactor educational simulator based on LabVIEW that allows the training of operators and studying different accident scenarios and the effects of operational parameters on the reactor behavior. Using this simulator, the trainee can test the interaction between the input parameters and the reactor activities. The LabVIEW acts as an engine implements the reactor mathematical models. In addition, it is used as a tool for implementing the animated graphical user interface. This simulator provides the training requirements for both of the reactor staff and the nuclear engineering students. Therefore, it uses dynamic animation to enhance learning and interest for a trainee on real system problems and provides better visual effects, improved communications, and higher interest levels. The benefits of conducting such projects are to develop the expertise in this field and save costs of both operators training and simulation courses.
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Affiliation(s)
- A. Arafa
- PhD of computer and system engineering at Radiation Engineering , Department, NCRRT, E.A.E.A., Atomic Energy Authority, 3 Ahmed Elzomor st. Nasr city, Cairo, Egypt , E-mail:
| | - H. I. Saleh
- Associated Professor of electronics engineering at Radiation Engineering Department , NCRRT, E.A.E.A., Atomic Energy Authority, 3 Ahmed Elzomor st. Nasr city, Cairo, Egypt , E-mail:
| | - N. Ashoub
- Professor of theoretical Reactor Physics at Reactor Physics Department , Nuclear Research Center, E.A.E.A., Atomic Energy Authority, 3 Ahmed Elzomor st. Nasr city, Cairo, Egypt , E-mail:
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14
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Hassan MK, Jobre Y, Arafa A, Abdelwhab EM, Kilany WH, Khoulosy SG, Bakry NR, Baile E, Ali A, Ankers P, Lubroth J. Detection of A/H5N1 virus from asymptomatic native ducks in mid-summer in Egypt. Arch Virol 2013; 158:1361-5. [PMID: 23381391 DOI: 10.1007/s00705-012-1599-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2012] [Accepted: 11/29/2012] [Indexed: 11/27/2022]
Abstract
In spite of all the efforts to control H5N1 in Egypt, the virus still circulates endemically, causing significant economic losses in the poultry industry and endangering human health. This study aimed to elucidate the role of clinically healthy ducks in perpetuation of H5N1 virus in Egypt in mid-summer, when the disease prevalence is at its lowest level. A total of 927 cloacal swabs collected from 111 household and 71 commercial asymptomatic duck flocks were screened by using a real-time reverse transcription polymerase chain reaction. Only five scavenging ducks from a native breed in three flocks were found infected with H5N1 virus. This study indicates that H5N1 virus can persist in free-range ducks in hot weather, in contrast to their counterparts confined in household or commercial settings. Surveillance to identify other potential reservoirs is essential.
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Affiliation(s)
- M K Hassan
- National Laboratory for Veterinary Quality Control on Poultry Production, P.O. Box 246, Dokki, Giza 12618, Egypt.
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15
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Shetaia S, Arafa A, Abd-El-Atty S. EFFICACY OF CERTAIN COMPOUNDS AGAINST THE GLASSY CLOVER SNAIL, MONACHA CARTUSIANA (MÜLLER) AT SHARKIA GOVERNORATE. Journal of Plant Protection and Pathology 2013; 4:67-73. [DOI: 10.21608/jppp.2013.87256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
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16
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Arafa A, Suarez D, Kholosy SG, Hassan MK, Nasef S, Selim A, Dauphin G, Kim M, Yilma J, Swayne D, Aly MM. Evolution of highly pathogenic avian influenza H5N1 viruses in Egypt indicating progressive adaptation. Arch Virol 2012; 157:1931-47. [PMID: 22760662 DOI: 10.1007/s00705-012-1385-9] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2012] [Accepted: 05/13/2012] [Indexed: 12/20/2022]
Abstract
Highly pathogenic avian influenza (HPAI) virus of the H5N1 subtype was first diagnosed in poultry in Egypt in 2006, and since then the disease became enzootic in poultry throughout the country, affecting the poultry industry and village poultry as well as infecting humans. Vaccination has been used as a part of the control strategy to help to control the disease. Epidemiological data with sequence analysis of H5N1 viruses is important to link the mechanism of virus evolution in Egypt. This study describes the evolutionary pattern of Egyptian H5N1 viruses based on molecular characterization for the isolates collected from commercial poultry farms and village poultry from 2006 to 2011. Genetic analysis of the hemagglutinin (HA) gene was done by sequencing of the full-length H5 gene. The epidemiological pattern of disease outbreaks in Egyptian poultry farms seems to be seasonal with no specific geographic distribution across the country. The molecular epidemiological data revealed that there are two major groups of viruses: the classic group of subclade 2.2.1 and a variant group of 2.2.1.1. The classic group is prevailing mainly in village poultry and had fewer mutations compared to the originally introduced virus in 2006. Since 2009, this group has started to be transmitted back to commercial sectors. The variant group emerged by late 2007, was prevalent mainly in vaccinated commercial poultry, mutated continuously at a higher rate until 2010, and started to decline in 2011. Genetic analysis of the neuraminidase (NA) gene and the other six internal genes indicates a grouping of the Egyptian viruses similar to that obtained using the HA gene, with no obvious reassortments. The results of this study indicate that HPAI-H5N1 viruses are progressively evolving and adapting in Egypt and continue to acquire new mutations every season.
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Affiliation(s)
- A Arafa
- National Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Dokki, Giza, Egypt.
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17
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Arafa A, Abd Elaziz H, El-Ashry R. ALTERNATIVE METHODS FOR CONTROLLING POMEGRANATE BUTTERFLY Virachola livia KLUG (LEPIDOPTERA LYCAENIDAE). Journal of Plant Protection and Pathology 2012; 3:327-335. [DOI: 10.21608/jppp.2012.83770] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
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18
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El-Zoghby E, Abdelwhab E, Arafa A, Selim A, Kholousy S, Kilany W, Hassan M, El-Kanawati Z, Aly M, Hafez H. Active surveillance of avian influenza virus in backyard birds in Egypt. J APPL POULTRY RES 2011. [DOI: 10.3382/japr.2011-00343] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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19
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Abdelwhab E, Abdelmagid M, El-Sheibeny L, El-Nagar H, Arafa A, Selim A, Nasef S, Aly M, Hafez H. Detection and molecular characterization of Mycoplasma gallisepticum field infection in TS-11-vaccinated broiler breeders. J APPL POULTRY RES 2011. [DOI: 10.3382/japr.2009-00130] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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20
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Hafez MH, Arafa A, Abdelwhab EM, Selim A, Khoulosy SG, Hassan MK, Aly MM. Avian influenza H5N1 virus infections in vaccinated commercial and backyard poultry in Egypt. Poult Sci 2010; 89:1609-13. [PMID: 20634514 DOI: 10.3382/ps.2010-00708] [Citation(s) in RCA: 67] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
In this paper, we describe results from a high-pathogenic H5N1 avian influenza virus (AIV) surveillance program in previously H5-vaccinated commercial and family-backyard poultry flocks that was conducted from 2007 to 2008 by the Egyptian National Laboratory for Veterinary Quality Control on Poultry Production. The real-time reverse transcription PCR assay was used to detect the influenza A virus matrix gene and detection of the H5 and N1 subtypes was accomplished using a commercially available kit real-time reverse transcription PCR assay. The virus was detected in 35/3,610 (0.97%) and 27/8,682 (0.31%) of examined commercial poultry farms and 246/816 (30%) and 89/1,723 (5.2%) of backyard flocks in 2007 and 2008, respectively. Positive flocks were identified throughout the year, with the highest frequencies occurring during the winter months. Anti-H5 serum antibody titers in selected commercial poultry ranged from <2 (negative) to 9.6 log(2) when determined in the hemagglutination inhibition test using a H5 AIV antigen. In conclusion, despite the nationwide vaccination strategy of poultry in Egypt to combat H5N1 AIV, continuous circulation of the virus in vaccinated commercial and backyard poultry was reported and the efficacy of the vaccination using a challenge model with the current circulating field virus should be revised.
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Affiliation(s)
- M H Hafez
- Institute of Poultry Diseases, Free Berlin University, 14163 Berlin, Germany.
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21
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Kilany WH, Arafa A, Erfan AM, Ahmed MS, Nawar AA, Selim AA, Khoulosy SG, Hassan MK, Aly MM, Hafez HM, Abdelwhab EM. Isolation of highly pathogenic avian influenza H5N1 from table eggs after vaccinal break in commercial layer flock. Avian Dis 2010; 54:1115-9. [PMID: 20945800 DOI: 10.1637/9369-041310-case.1] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
In May 2009, during routine monitoring of a commercial layer flock of about 87,000 birds kept in cages in 4 different houses that had been vaccinated 3 times with an inactivated H5N1 vaccine at weeks 1, 7, and 16, highly pathogenic avian influenza (HPAI) virus of subtype H5N1 was isolated and detected by real-time reverse transcriptase-polymerase chain reaction (RT-PCR) in tracheal and cloacal swabs collected from houses 3 and 4; 7 days after onset of clinical signs, there was an increase in mortality accompanied by a decrease in egg production and egg quality. In addition, using RT-PCR, the viral RNA could be detected from albumin and eggshell as well. Seven days after the onset of the clinical signs, the hemagglutination inhibition (HI) titers in the affected houses were 3.2 and 1.9 log2. In the other two houses, there were no clinical signs, and all tested samples were negative using virus isolation and real-time RT-PCR. The HI titers were 6.6 and 7.0 log2 in nonaffected houses. The isolated virus from egg albumin showed high nucleotides and amino-acid identities and clustered with viruses from recently H5N1-confirmed human infections and poultry from different places in Egypt. Moreover, several amino-acid substitutions of viral H5 protein were observed. The vaccinal break seems to be associated with immune escape mutants and/or improper vaccination. The role of contaminated eggs as a source of infection and as a vehicle for spread of the virus should be considered in area with avian influenza outbreaks.
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Affiliation(s)
- W H Kilany
- National Laboratory for Veterinary Quality Control on Poultry Production, Animal Health Research Institute, Nadi El-Seid St. Dokki, P.O. Box 264, Giza 12618, Egypt
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Abdelwhab EM, Selim AA, Arafa A, Galal S, Kilany WH, Hassan MK, Aly MM, Hafez MH. Circulation of avian influenza H5N1 in live bird markets in Egypt. Avian Dis 2010; 54:911-4. [PMID: 20608538 DOI: 10.1637/9099-100809-resnote.1] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
The poultry meat trade in Egypt depends mainly on live bird markets (LBMs) because of insufficient slaughterhouses, lack of marketing infrastructure, and cultural preference for consumption of freshly slaughtered poultry. There are two types of LBMs in Egypt: retail shops and traditional LBMs where minimal, if any, food safety standards or veterinary inspection are implemented. Before January 2009, LBMs were considered to be a missing link in the epidemiology of avian influenza in Egypt. This incited us to initiate this surveillance to better understand the perpetuation of H5N1 and the risk of infection in poultry markets. Seventy-one out of 573 (12.4%) examined LBMs were positive for the H5N1 subtype by real-time--quantitative polymerase chain reaction (RT-qPCR) from January to April 2009. Where a 70.4% detection rate from LBMs had waterfowl only as a solitary sold species, a 26.8% detection rate from LBMs had waterfowl mixed with chicken and/or turkey, and 2.8% from LBMs had only turkey. Higher incidence, 40.8%, of positive LBMs was recorded during the cold month of February and concentrated mainly in the highly populated Nile Delta. These findings revealed wide circulation of H5N1 avian influenza virus in LBMs in Egypt, which poses a threat to public health and the poultry industry. Long-term control measures are required, and routine surveillance of bird markets should be conducted year-round.
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Affiliation(s)
- E M Abdelwhab
- National Laboratory for Veterinary Quality Control on Poultry Production, Nadi El-Seid Street-Dokki, P.O. Box 246, Giza 12618, Egypt.
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23
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Aly MM, Arafa A, Kilany WH, Sleim AA, Hassan MK. Isolation of a low pathogenic avian influenza virus (H7N7) from a black kite (Milvus migrans) in Egypt in 2005. Avian Dis 2010; 54:457-60. [PMID: 20521679 DOI: 10.1637/8719-032109-resnote.1] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Avian influenza is endemic in some species of wild birds and is generally believed to cause only an asymptomatic infection. These viruses are routinely transmitted from this wild bird reservoir to poultry in many areas all over the world. Low pathogenic avian influenza (LPAI) was previously reported in Egypt from different types of wild birds. This report describes the isolation and genetic characterization of H7N7 LPAI virus from a black kite (Milvus migrans), the first reported from this species, during surveillance done on wild birds in 2005. The black kite is a migratory bird that has breeding habitat in Europe and migrates in the winter to North Africa and the Middle East. Eight samples were collected in South Sinai, Egypt, and tested by virus isolation in embryonating chicken eggs. One sample had positive hemagglutination activity after the second passage in specific-pathogen-free embryos. Virus identification and characterization were done and the isolate was confirmed as H7N7 LPAI. The sequence data showed that this isolate was most closely related to European H7 strains isolated from domestic and wild birds.
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Affiliation(s)
- M M Aly
- National Laboratory for Veterinary Quality Control on Poultry Production, P.O. Box 264- Dokki, Giza, Egypt 12618
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Arafa A, Suarez DL, Hassan MK, Aly MM. Phylogenetic Analysis of Hemagglutinin and Neuraminidase Genes of Highly Pathogenic Avian Influenza H5N1 Egyptian Strains Isolated from 2006 to 2008 Indicates Heterogeneity with Multiple Distinct Sublineages. Avian Dis 2010; 54:345-9. [DOI: 10.1637/8927-051509-resnote.1] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Nakash A, Arafa A, Datta T. Heart disease in pregnancy. J OBSTET GYNAECOL 2009; 29:767-8. [PMID: 19821679 DOI: 10.3109/01443610903182839] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Affiliation(s)
- A Nakash
- Royal Free Hospital, London, UK.
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Arafa A, Peitsidis P, Orakwue O, Economides DL. A novel case of amniotic fluid embolism in multiple pregnancy. J OBSTET GYNAECOL 2009; 29:64-5. [PMID: 19280505 DOI: 10.1080/01443610802499482] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- A Arafa
- Department of Obstetrics and Gynaecology, Royal Free Hampstead NHS Trust, London, UK
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Arafa A, Peitsidis P, Kadir RA. Unusual case of congenital chylothorax. J OBSTET GYNAECOL 2009; 29:59-60. [PMID: 19280501 DOI: 10.1080/01443610802484062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- A Arafa
- Department of Obstetrics and Gynaecology, Royal Free Hospital NHS Trust, London, UK
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Aly MM, Arafa A, Hassan MK. Epidemiological Findings of Outbreaks of Disease Caused by Highly Pathogenic H5N1 Avian Influenza Virus in Poultry in Egypt During 2006. Avian Dis 2008; 52:269-77. [DOI: 10.1637/8166-103007-reg.1] [Citation(s) in RCA: 100] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Sarris I, Arafa A, Konaris L, Kadir RA. Topical use of tranexamic acid to control perioperative local bleeding in gynaecology patients with clotting disorders: two cases. Haemophilia 2007; 13:115-6. [PMID: 17212738 DOI: 10.1111/j.1365-2516.2006.01386.x] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Operating on patients with abnormal coagulation is a challenge frequently faced by surgeons. Achieving haemostasis perioperatively can involve bleeding points that would not ordinarily present a problem with intact clotting function. Here we present two women with localised wound bleeding following a gynaecological surgery in the presence of a clotting disorder. Haemostasis was successfully achieved with tropical use of tranexamic acid. These two cases illustrate a novel use for this antifibrinolytic agent. We suggest that there is a role for topical use of tranexamic acid in perioperative haemostasis in patients with clotting disorders.
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Affiliation(s)
- I Sarris
- Royal Free Hospital NHS Trust, Department of Obstetrics and Gynaecology, London, UK
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Abbassy M, Hussein L, Arafa A, Morcos SR. Variation of body nitrogen--body water ratio of Sprague-Dawley rats as a function of the dietary protein quality and quantity. Z Ernahrungswiss 1980; 19:24-7. [PMID: 7385917 DOI: 10.1007/bf02021068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Forty-two male Sprague-Dawley rats aged 45 days were analyzed for total body nitrogen and body water, and the correlation between the body nitrogen:body water ratio according to the type and level of protein was found lowest body nitrogen:body water ratios (0.021-0.033) in rats maintained on protein-free diet, or in diets in which protein was derived from French bread. Highest body nitrogen:body water ratios were found in rats maintained on either 7.2 or 7.9% or diets, based on casein protein + dl-methionine.
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Hussein L, Abbassy M, Arafa A, Morcos SR. The amino acid composition and protein quality of biscuits. Z Ernahrungswiss 1979; 18:245-9. [PMID: 549271 DOI: 10.1007/bf02020514] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The protein quality of biscuits (Mary's Bisuit), a product largely consumed by infant and children in this country proved to be of very inferior quality, with very low lysine content, which is obviously completely destroyed during the baking process. Rats fed biscuits as protein source lost weight during the experimentation period and their food consumption was too low. Rats fed this diet showed also very slight increase in body water (1.9 g), in comparison to a value of 16.0 g in rats fed casein at the same dietary protein level.
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Abbassy M, Hussein L, Arafa A, Morcos SR. The amino acid composition and protein quality of high-protein gluten bread. Z Ernahrungswiss 1979; 18:239-44. [PMID: 549270 DOI: 10.1007/bf02020513] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Dietetic bread is mainly produced for diabetics. Gluten accounts 80% of the protein of whole wheat flour. Forty per cent wheat gluten are incorporated in the dough to increase the protein content and decrease the starch in the final product. Gluten-rich foods are still of low cost as compared to others such as skim milk, soya and fish flour.
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Hussein L, Abbassy M, Arafa A, Morcos SR. Evaluation of the protein quality of wheat grains (Grizza 155) and eight related products by the dose-response bioassay. Z Ernahrungswiss 1979; 18:275-85. [PMID: 549274 DOI: 10.1007/bf02020518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The amino acid analysis revealed that wheat grains, white and dark flour, baladi bread prepared from white or dark flour, bread prepared from formulae enriched with gluten and biscuits are poor in lysine with chemical scores ranging between 20 and 49. The assessment of the protein quality of wheat and related products was done by slope ratio bioassay. Results based on slopes relative to those of reference casein + methionine ranked bread prepared from dark flour and cooked wheat (belila) as the highest in their protein quality, followed by their parent; wheat (RNV = 44). Dietetic bread with gluten had RNV = 20-24; owing to its high protein content (38%), its utilizable protein approached that of good proteins (8%). Very high significant correlation existed between the two measures of response; gain in weight and net increase in body water as response of nitrogen intake.
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Al-Ghorab MM, Rahman MA, El-Rifaie M, Hanafy HM, Abou El Azm T, Arafa A, Saad SM. Radiologic findings of bilharzial (schistosomal) contracted bladder. Urology 1978; 11:303-5. [PMID: 636140 DOI: 10.1016/0090-4295(78)90143-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The radiologic findings in bilharzial contracted bladder are presented. Calcifications of the bladder were seen in only 4.3 per cent, hydronephrosis in 37.2 per cent, and reflux in 62.8 per cent.
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el-Sewedy SM, Arafa A, Abdel-Aal G, Mostafa MH. The activities of urinary alpha-esterases in bilharziasis and their possible role in the diagnosis of bilharzial bladder cancer in Egypt. Trans R Soc Trop Med Hyg 1978; 72:525-8. [PMID: 726000 DOI: 10.1016/0035-9203(78)90176-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
The activities of serum and urinary alpha-esterases were studied in 49 bilharzial bladder cancer patients, 92 bilharzial patients with other, different, urologic diseases and 22 normal healthy controls. Among the group studied, the bilharzial bladder cancer patients showed the highest level of urinary-alpha-esterases and the lowest ratio of serum/urine activity. These patients showed a significant increase in the activity of urinary alpha-esterases as compared with the normal controls or with the other different bilharzial groups. Although a small but significant increase in serum activity was observed in all the bilharzial groups studied compared with the normal healthy controls, no significant difference was found between the bilharzial bladder cancer patients and the other different bilharzial groups. Biochemical determination of urinary alpha-esterases for bilharzial patients revealed a high degree of accuracy for the diagnosis of bilharzial bladder cancer (95.9%), with low falsely positive (3.26%) and falsely negative (4.08%) results. The activity of urinary alpha-esterases in recommended as a screening test for bilharzial bladder cancer.
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Kader MM, Angel H, Kamel G, el-Kemmah B, Abdel-Aziz MT, Kinawi M, el-Saadani AM, Erfan A, Madwar KR, Shaheen MH, Arafa A. [Hepato-portal hemodynamics and liver function in heart diseases]. Dtsch Gesundheitsw 1972; 27:1458-62. [PMID: 5079456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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