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Dysvik A, La Rosa SL, Buffetto F, Liland KH, Myhrer KS, Rukke EO, Wicklund T, Westereng B. Secondary Lactic Acid Bacteria Fermentation with Wood-Derived Xylooligosaccharides as a Tool To Expedite Sour Beer Production. J Agric Food Chem 2020; 68:301-314. [PMID: 31820631 DOI: 10.1021/acs.jafc.9b05459] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Xylooligosaccharides (XOS) from woody biomass were evaluated as a substrate for secondary lactic acid bacteria (LAB) fermentation in sour beer production. XOS were extracted from birch (Betula pubescens) and added to beer to promote the growth of Lactobacillus brevis BSO 464. Growth, pH, XOS degradation, and metabolic products were monitored throughout fermentations, and the final beer was evaluated sensorically. XOS were utilized, metabolic compounds were produced (1800 mg/L lactic acid), and pH was reduced from 4.1 to 3.6. Secondary fermentation changed sensory properties significantly, and the resulting sour beer was assessed as similar to a commercial reference in multiple attributes, including acidic taste. Overall, secondary LAB fermentation induced by wood-derived XOS provided a new approach to successfully produce sour beer with reduced fermentation time (from 1-3 years to 4 weeks). The presented results demonstrate how hemicellulosic biomass can be valorized for beverage production and to obtain sour beer with improved process control.
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Affiliation(s)
- Anna Dysvik
- Faculty of Chemistry, Biotechnology and Food Science , Norwegian University of Life Sciences , P.O. Box 5003, N-1432 Aas , Norway
| | - Sabina Leanti La Rosa
- Faculty of Chemistry, Biotechnology and Food Science , Norwegian University of Life Sciences , P.O. Box 5003, N-1432 Aas , Norway
| | - Fanny Buffetto
- Faculty of Chemistry, Biotechnology and Food Science , Norwegian University of Life Sciences , P.O. Box 5003, N-1432 Aas , Norway
| | - Kristian Hovde Liland
- Faculty of Science and Technology , Norwegian University of Life Sciences , P.O. Box 5003, N-1433 Ås , Norway
| | - Kristine S Myhrer
- NOFIMA - Norwegian Institute of Food, Fisheries and Aquaculture Research , PB 210, N-1431 Ås , Norway
| | - Elling-Olav Rukke
- Faculty of Chemistry, Biotechnology and Food Science , Norwegian University of Life Sciences , P.O. Box 5003, N-1432 Aas , Norway
| | - Trude Wicklund
- Faculty of Chemistry, Biotechnology and Food Science , Norwegian University of Life Sciences , P.O. Box 5003, N-1432 Aas , Norway
| | - Bjørge Westereng
- Faculty of Chemistry, Biotechnology and Food Science , Norwegian University of Life Sciences , P.O. Box 5003, N-1432 Aas , Norway
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Rollero S, Zietsman AJJ, Buffetto F, Schückel J, Ortiz-Julien A, Divol B. Kluyveromyces marxianus Secretes a Pectinase in Shiraz Grape Must That Impacts Technological Properties and Aroma Profile of Wine. J Agric Food Chem 2018; 66:11739-11747. [PMID: 30350960 DOI: 10.1021/acs.jafc.8b03977] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Since Saccharomyces cerevisiae strains display no to weak pectinase activity, the utilization of external pectinase is a common practice in winemaking to enhance the extraction of compounds located in the grape berry skins during maceration. In this study, the activity of the native endopolygalacturonase of a Kluyveromyces marxianus strain, isolated from grape juice, was characterized in Shiraz grape must during alcoholic fermentation with or without prefermentative cold maceration. The wines made with K. marxianus had a higher methanol concentration, more free-run wine, an altered volatile compound profile, and displayed pectinase activity in cell-free wine samples. Moreover, the results strongly suggest that K. marxianus' pectinase released polygalacturonic acid soluble fragments, unlike fungal pectinases, which mostly release monomers. Overall, this study shows that K. marxianus is an effective pectinase producer in wine with potential benefits for wine properties.
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Affiliation(s)
- Stéphanie Rollero
- Institute for Wine Biotechnology, Department of Viticulture and Oenology , Stellenbosch University , Matieland 7602 , South Africa
| | - Anscha J J Zietsman
- Institute for Wine Biotechnology, Department of Viticulture and Oenology , Stellenbosch University , Matieland 7602 , South Africa
| | - Fanny Buffetto
- Institute for Wine Biotechnology, Department of Viticulture and Oenology , Stellenbosch University , Matieland 7602 , South Africa
| | - Julia Schückel
- Department of Plant and Environmental Sciences, Faculty of Science , University of Copenhagen , Thorvaldsensvej 40 , 1871 Frederiksberg C , Denmark
| | | | - Benoit Divol
- Institute for Wine Biotechnology, Department of Viticulture and Oenology , Stellenbosch University , Matieland 7602 , South Africa
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Ndeh D, Rogowski A, Cartmell A, Luis AS, Baslé A, Gray J, Venditto I, Briggs J, Zhang X, Labourel A, Terrapon N, Buffetto F, Nepogodiev S, Xiao Y, Field RA, Zhu Y, O'Neill MA, Urbanowicz BR, York WS, Davies GJ, Abbott DW, Ralet MC, Martens EC, Henrissat B, Gilbert HJ. Corrigendum: Complex pectin metabolism by gut bacteria reveals novel catalytic functions. Nature 2017; 548:612. [PMID: 29411780 DOI: 10.1038/nature23659] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
This corrects the article DOI: 10.1038/nature21725.
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Ndeh D, Rogowski A, Cartmell A, Luis AS, Baslé A, Gray J, Venditto I, Briggs J, Zhang X, Labourel A, Terrapon N, Buffetto F, Nepogodiev S, Xiao Y, Field RA, Zhu Y, O'Neil MA, Urbanowicz BR, York WS, Davies GJ, Abbott DW, Ralet MC, Martens EC, Henrissat B, Gilbert HJ. Complex pectin metabolism by gut bacteria reveals novel catalytic functions. Nature 2017; 544:65-70. [PMID: 28329766 PMCID: PMC5388186 DOI: 10.1038/nature21725] [Citation(s) in RCA: 373] [Impact Index Per Article: 53.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2016] [Accepted: 02/27/2017] [Indexed: 12/30/2022]
Abstract
Carbohydrate polymers drive microbial diversity in the human gut
microbiota. It is unclear, however, whether bacterial consortia or single
organisms are required to depolymerize highly complex glycans. Here we show that
the gut bacterium Bacteroides thetaiotaomicron utilizes the
most structurally complex glycan known; the plant pectic polysaccharide
rhamnogalacturonan-II, cleaving all but one of its 21 distinct glycosidic
linkages. We show that rhamnogalacturonan-II side-chain and backbone
deconstruction are coordinated, to overcome steric constraints, and that
degradation reveals previously undiscovered enzyme families and novel catalytic
activities. The degradome informs revision of the current structural model of
RG-II and highlights how individual gut bacteria orchestrate manifold enzymes to
metabolize the most challenging glycans in the human diet.
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Affiliation(s)
- Didier Ndeh
- Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K
| | - Artur Rogowski
- Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K
| | - Alan Cartmell
- Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K
| | - Ana S Luis
- Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K
| | - Arnaud Baslé
- Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K
| | - Joseph Gray
- Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K
| | - Immacolata Venditto
- Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K
| | - Jonathon Briggs
- Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K
| | - Xiaoyang Zhang
- Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K
| | - Aurore Labourel
- Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K
| | - Nicolas Terrapon
- Architecture et Fonction des Macromolécules Biologiques, Centre National de la Recherche Scientifique (CNRS), Aix-Marseille University, F-13288 Marseille, France
| | - Fanny Buffetto
- INRA, UR1268 Biopolymères Interactions Assemblages, 44300 Nantes, France
| | - Sergey Nepogodiev
- Department of Biological Chemistry, John Innes Centre Norwich Research Park, Norwich NR4 7UH, UK
| | - Yao Xiao
- Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA
| | - Robert A Field
- Department of Biological Chemistry, John Innes Centre Norwich Research Park, Norwich NR4 7UH, UK
| | - Yanping Zhu
- Complex Carbohydrate Research Center, The University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA
| | - Malcolm A O'Neil
- Complex Carbohydrate Research Center, The University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA
| | - Breeana R Urbanowicz
- Complex Carbohydrate Research Center, The University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA
| | - William S York
- Complex Carbohydrate Research Center, The University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA
| | - Gideon J Davies
- Department of Chemistry, University of York, York YO10 5DD, U.K
| | | | | | - Eric C Martens
- Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA
| | - Bernard Henrissat
- Architecture et Fonction des Macromolécules Biologiques, Centre National de la Recherche Scientifique (CNRS), Aix-Marseille University, F-13288 Marseille, France.,INRA, USC 1408 AFMB, F-13288 Marseille, France.,Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Harry J Gilbert
- Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, U.K
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Cornuault V, Buffetto F, Rydahl MG, Marcus SE, Torode TA, Xue J, Crépeau MJ, Faria-Blanc N, Willats WGT, Dupree P, Ralet MC, Knox JP. Monoclonal antibodies indicate low-abundance links between heteroxylan and other glycans of plant cell walls. Planta 2015; 242:1321-1334. [PMID: 26208585 PMCID: PMC4605975 DOI: 10.1007/s00425-015-2375-4] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2015] [Accepted: 07/15/2015] [Indexed: 05/17/2023]
Abstract
The derivation of two sensitive monoclonal antibodies directed to heteroxylan cell wall polysaccharide preparations has allowed the identification of potential inter-linkages between xylan and pectin in potato tuber cell walls and also between xylan and arabinogalactan-proteins in oat grain cell walls. Plant cell walls are complex composites of structurally distinct glycans that are poorly understood in terms of both in muro inter-linkages and developmental functions. Monoclonal antibodies (MAbs) are versatile tools that can detect cell wall glycans with high sensitivity through the specific recognition of oligosaccharide structures. The isolation of two novel MAbs, LM27 and LM28, directed to heteroxylan, subsequent to immunisation with a potato cell wall fraction enriched in rhamnogalacturonan-I (RG-I) oligosaccharides, is described. LM27 binds strongly to heteroxylan preparations from grass cell walls and LM28 binds to a glucuronosyl-containing epitope widely present in heteroxylans. Evidence is presented suggesting that in potato tuber cell walls, some glucuronoxylan may be linked to pectic macromolecules. Evidence is also presented that suggests in oat spelt xylan both the LM27 and LM28 epitopes are linked to arabinogalactan-proteins as tracked by the LM2 arabinogalactan-protein epitope. This work extends knowledge of the potential occurrence of inter-glycan links within plant cell walls and describes molecular tools for the further analysis of such links.
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Affiliation(s)
- Valérie Cornuault
- Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Fanny Buffetto
- UR1268 Biopolymères, Interactions et Assemblages, Institut National de la Recherche Agronomique, Rue de la Géraudière, BP 71627, 44316, Nantes, France
| | - Maja G Rydahl
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark
| | - Susan E Marcus
- Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Thomas A Torode
- Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Jie Xue
- Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Marie-Jeanne Crépeau
- UR1268 Biopolymères, Interactions et Assemblages, Institut National de la Recherche Agronomique, Rue de la Géraudière, BP 71627, 44316, Nantes, France
| | - Nuno Faria-Blanc
- Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QW, UK
| | - William G T Willats
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark
| | - Paul Dupree
- Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QW, UK
| | - Marie-Christine Ralet
- UR1268 Biopolymères, Interactions et Assemblages, Institut National de la Recherche Agronomique, Rue de la Géraudière, BP 71627, 44316, Nantes, France
| | - J Paul Knox
- Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK.
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Buffetto F, Cornuault V, Rydahl MG, Ropartz D, Alvarado C, Echasserieau V, Le Gall S, Bouchet B, Tranquet O, Verhertbruggen Y, Willats WGT, Knox JP, Ralet MC, Guillon F. The Deconstruction of Pectic Rhamnogalacturonan I Unmasks the Occurrence of a Novel Arabinogalactan Oligosaccharide Epitope. Plant Cell Physiol 2015; 56:2181-96. [PMID: 26384432 DOI: 10.1093/pcp/pcv128] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2015] [Accepted: 09/02/2015] [Indexed: 05/18/2023]
Abstract
Rhamnogalacturonan I (RGI) is a pectic polysaccharide composed of a backbone of alternating rhamnose and galacturonic acid residues with side chains containing galactose and/or arabinose residues. The structure of these side chains and the degree of substitution of rhamnose residues are extremely variable and depend on species, organs, cell types and developmental stages. Deciphering RGI function requires extending the current set of monoclonal antibodies (mAbs) directed to this polymer. Here, we describe the generation of a new mAb that recognizes a heterogeneous subdomain of RGI. The mAb, INRA-AGI-1, was produced by immunization of mice with RGI oligosaccharides isolated from potato tubers. These oligomers consisted of highly branched RGI backbones substituted with short side chains. INRA-AGI-1 bound specifically to RGI isolated from galactan-rich cell walls and displayed no binding to other pectic domains. In order to identify its RGI-related epitope, potato RGI oligosaccharides were fractionated by anion-exchange chromatography. Antibody recognition was assessed for each chromatographic fraction. INRA-AGI-1 recognizes a linear chain of (1→4)-linked galactose and (1→5)-linked arabinose residues. By combining the use of INRA-AGI-1 with LM5, LM6 and INRA-RU1 mAbs and enzymatic pre-treatments, evidence is presented of spatial differences in RGI motif distribution within individual cell walls of potato tubers and carrot roots. These observations raise questions about the biosynthesis and assembly of pectin structural domains and their integration and remodeling in cell walls.
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Affiliation(s)
- Fanny Buffetto
- INRA, UR1268 Biopolymères Interactions Assemblages, 44300 Nantes, France Present address: Institute for Wine Biotechnology, Department of Viticulture and Oenology, Faculty of AgriSciences, Stellenbosch University, Matieland 7602, South Africa
| | - Valérie Cornuault
- Centre for Plant Sciences, Faculty of Biological Sciences University of Leeds, Leeds LS2 9JT, UK
| | - Maja Gro Rydahl
- Department of Plant and Environmental Sciences, University of Copenhagen, 1871 Frederiksberg, Denmark
| | - David Ropartz
- INRA, UR1268 Biopolymères Interactions Assemblages, 44300 Nantes, France
| | - Camille Alvarado
- INRA, UR1268 Biopolymères Interactions Assemblages, 44300 Nantes, France
| | | | - Sophie Le Gall
- INRA, UR1268 Biopolymères Interactions Assemblages, 44300 Nantes, France
| | - Brigitte Bouchet
- INRA, UR1268 Biopolymères Interactions Assemblages, 44300 Nantes, France
| | - Olivier Tranquet
- INRA, UR1268 Biopolymères Interactions Assemblages, 44300 Nantes, France
| | | | - William G T Willats
- Department of Plant and Environmental Sciences, University of Copenhagen, 1871 Frederiksberg, Denmark
| | - J Paul Knox
- Centre for Plant Sciences, Faculty of Biological Sciences University of Leeds, Leeds LS2 9JT, UK
| | | | - Fabienne Guillon
- INRA, UR1268 Biopolymères Interactions Assemblages, 44300 Nantes, France
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Buffetto F, Ropartz D, Zhang XJ, Gilbert HJ, Guillon F, Ralet MC. Recovery and fine structure variability of RGII sub-domains in wine (Vitis vinifera Merlot). Ann Bot 2014; 114:1327-37. [PMID: 24908680 PMCID: PMC4195555 DOI: 10.1093/aob/mcu097] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
BACKGROUND AND AIMS Rhamnogalacturonan II (RGII) is a structurally complex pectic sub-domain composed of more than 12 different sugars and 20 different linkages distributed in five side chains along a homogalacturonan backbone. Although RGII has long been described as highly conserved over plant evolution, recent studies have revealed variations in the structure of the polysaccharide. This study examines the fine structure variability of RGII in wine, focusing on the side chains A and B obtained after sequential mild acid hydrolysis. Specifically, this study aims to differentiate intrinsic structural variations in these RGII side chains from structural variations due to acid hydrolysis. METHODS RGII from wine (Vitis vinifera Merlot) was sequentially hydrolysed with trifluoroacetic acid (TFA) and the hydrolysis products were separated by anion-exchange chromatography (AEC). AEC fractions or total hydrolysates were analysed by MALDI-TOF mass spectrometry. KEY RESULTS The optimal conditions to recover non-degraded side chain B, side chain A and RGII backbone were 0·1 m TFA at 40 °C for 16 h, 0·48 m TFA at 40 °C for 16 h (or 0·1 m TFA at 60 °C for 8 h) and 0·1 m TFA at 60 °C for 16 h, respectively. Side chain B was particularly prone to acid degradation. Side chain A and the RGII GalA backbone were partly degraded by 0·1 m TFA at 80 °C for 1-4 h. AEC allowed separation of side chain B, methyl-esterified side chain A and non-methyl-esterified side chain A. The structure of side chain A and the GalA backbone were highly variable. CONCLUSIONS Several modifications to the RGII structure of wine were identified. The observed dearabinosylation and deacetylation were primarily the consequence of acidic treatment, while variation in methyl-esterification, methyl-ether linkages and oxidation reflect natural diversity. The physiological significance of this variability, however, remains to be determined.
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Affiliation(s)
- F Buffetto
- INRA, UR1268 Biopolymères Interactions Assemblages, 44300 Nantes, France
| | - D Ropartz
- INRA, UR1268 Biopolymères Interactions Assemblages, 44300 Nantes, France
| | - X J Zhang
- Institute for Cell and Molecular Biosciences Medical School, Newcastle University, Framlington Place, UK
| | - H J Gilbert
- Institute for Cell and Molecular Biosciences Medical School, Newcastle University, Framlington Place, UK
| | - F Guillon
- INRA, UR1268 Biopolymères Interactions Assemblages, 44300 Nantes, France
| | - M-C Ralet
- INRA, UR1268 Biopolymères Interactions Assemblages, 44300 Nantes, France
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