LOXL2-mediated H3K4 oxidation reduces chromatin accessibility in triple-negative breast cancer cells

Oxidation of H3 at lysine 4 (H3K4ox) by lysyl oxidase-like 2 (LOXL2) generates an H3 modification with an unknown physiological function. We find that LOXL2 and H3K4ox are higher in triple-negative breast cancer (TNBC) cell lines and patient-derived xenografts (PDXs) than those from other breast cancer subtypes. ChIP-seq revealed that H3K4ox is located primarily in heterochromatin, where it is involved in chromatin compaction. Knocking down LOXL2 reduces H3K4ox levels and causes chromatin decompaction, resulting in a sustained activation of the DNA damage response (DDR) and increased susceptibility to anticancer agents. This critical role that LOXL2 and oxidized H3 play in chromatin compaction and DDR suggests that functionally targeting LOXL2 could be a way to sensitize TNBC cells to conventional therapy.

The α-decay of the Hoyle state in 12C: a new high-precision investigation

The αdecay path of the Hoyle state in 12C (Ex = 7:654MeV) represents one ofthe most challenging questions of modern nuclear physics. Its knowledge can help in theunderstanding of cluster configurations in light nuclei and the possible existence of Bose-Einstein condensates in nuclei. In stars, it is involved in the so-called 3αprocess, wherethe 12C nucleosynthesis occurs. We studied the 14N(d; α2)12C(7:654) reaction at 10:5MeVincident energy to probe its direct decay component. We found, with a precision higherof a factor 5 than any other previous experiment, an almost total absence of direct decaysby-passing the ground state of 8Be. From our analysis, a new upper limit of such decayis found at 0:043% (95% C.L.). Astrophysical 3α process reaction rate calculations haveto be accordingly revised.

High-Precision Probe of the Fully Sequential Decay Width of the Hoyle State in ^{12}C

The decay path of the Hoyle state in ^{12}C (E_{x}=7.654  MeV) has been studied with the ^{14}N(d,α_{2})^{12}C(7.654) reaction induced at 10.5 MeV. High resolution invariant mass spectroscopy techniques have allowed us to unambiguously disentangle direct and sequential decays of the state passing through the ground state of ^{8}Be. Thanks to the almost total absence of background and the attained resolution, a fully sequential decay contribution to the width of the state has been observed. The direct decay width is negligible, with an upper limit of 0.043% (95% C.L.). The precision of this result is about a factor 5 higher than previous studies. This has significant implications on nuclear structure, as it provides constraints to 3α cluster model calculations, where higher precision limits are needed.

Ground-state proton decay of 69Br and implications for the 68Se astrophysical rapid proton-capture process waiting point

We report on the first direct measurement of the proton separation energy for the proton-unbound nucleus (69)Br. Bypassing the (68)Se waiting point in the rp process is directly related to the 2p-capture rate through (69)Br, which depends exponentially on the proton separation energy. We find a proton separation energy for (69)Br of Sp((69)Br )= -785(-40)(+34) keV; this is less bound compared to previous predictions which have relied on uncertain theoretical calculations. The influence of the extracted proton separation energy on the rp process occurring in type I x-ray bursts is examined within the context of a one-zone burst model.

Isotopic dependence of the nuclear caloric curve

The A/Z dependence of projectile fragmentation at relativistic energies has been studied with the ALADIN forward spectrometer at SIS. A stable beam of (124)Sn and radioactive beams of (124)La and (107)Sn at 600 MeV per nucleon have been used in order to explore a wide range of isotopic compositions. Chemical freeze-out temperatures are found to be nearly invariant with respect to the A/Z of the produced spectator sources, consistent with predictions for expanded systems. Small Coulomb effects (DeltaT approximately 0.6 MeV) appear for residue production near the onset of multifragmentation.

Isospin dependence of incomplete fusion reactions at 25 MeV/nucleon

40Ca+;{40,48}Ca,46Ti reactions at 25 MeV/nucleon have been studied using the 4pi CHIMERA detector. An isospin effect on the competition between fusionlike and binarylike reaction mechanisms has been observed. The probability of producing a heavy residue is lower in the case of N approximately Z colliding systems as compared to the case of reactions induced on the neutron rich 48Ca target. Predictions based on constrained molecular dynamics II calculations show that the competition between fusionlike and binary reactions in the selected centrality bins can constrain the parametrization of the symmetry energy and its density dependence in the nuclear equation of state.

Neutron and proton transverse emission ratio measurements and the density dependence of the asymmetry term of the nuclear equation of state

Recent measurements of preequilibrium neutron and proton transverse emission from (112,124)Sn+(112,124)Sn reactions at 50 MeV/A have been completed at the National Superconducting Cyclotron Laboratory. Free nucleon transverse emission ratios are compared to those of A=3 mirror nuclei. Comparisons are made to Boltzmann-Uehling-Uhlenbeck (BUU) transport calculations and conclusions concerning the density dependence of the asymmetry term of the nuclear equation of state at subnuclear densities are made. Comparison to BUU model predictions indicate a density dependence of the asymmetry energy that is closer to a form in which the asymmetry energy increases as the square root of the density for the density region studied. A coalescent-invariant analysis is introduced as a means of reducing suggested difficulties with cluster emission in total nucleon emission.

Isospin diffusion and the nuclear symmetry energy in heavy ion reactions

Using symmetric 112Sn+112Sn, 124Sn+124Sn collisions as references, we probe isospin diffusion in peripheral asymmetric 112Sn+124Sn, 124Sn+112Sn systems at an incident energy of E/A=50 MeV. Isoscaling analyses imply that the quasiprojectile and quasitarget in these collisions do not achieve isospin equilibrium, permitting an assessment of isospin transport rates. We find that comparisons between isospin sensitive experimental and theoretical observables, using suitably chosen scaled ratios, permit investigation of the density dependence of the asymmetry term of the nuclear equation of state.

"In vitro" antifungal activity of protease inhibitors

In the last five years, as HAART has become standard therapy in HIV seropositive or AIDS patients, changes have been noted in the numbers and types of opportunistic fungal infections in these cohorts of patients. Particularly, oropharyngeal candidiasis have become rare in HIV infected patients since the introduction of new anti-HIV drugs of the protease inhibitors type. At the Immunology Institute of the Universidad Central de Venezuela the most frequent protease inhibitors (PIs) used for the treatment of these patients have been: Nelfinavir (Viracept, Roche), Indinavir (Crixivan Merck), Ritonavir (Norvir, Abbott), Saquinavir (Fortovase, Roche). Recently, we observed that recurrent candidiasis was less frequent and no Candida could be isolated in our patients. A direct relation to the PIs was suspected. In order to assess the "in vitro" antifungal activity of the afore mentioned protease inhibitors on Candida sp., we used both the well diffusion test and the NCCLS broth microdilution test to assay 100 Candida sp. isolates from HIV seropositive or AIDS patients with syntomatic oropharyngeal Candida infection. In general, the data obtained with the well diffusion test were in agreement with those obtained by the broth microdilution test. All 100 isolates were susceptible to Saquinavir and 32 were susceptible to Indinavir using the NCCLS microdilution test, while 97 were susceptible to Saquinavir and 52 to Indinavir by the well diffusion test. From 17 C. albicans resistant to fluconazole, all were susceptible to Saquinavir by the NCCLS micromethod and 16 by the well diffusion test. Our results showed anticandidal activity "in vitro" of PIs, mainly Saquinavir.

Isotopic scaling in nuclear reactions

A three parameter scaling relationship between isotopic distributions for elements with Z< or =8 has been observed. This allows a simple description of the dependence of such distributions on the overall isospin of the system. This scaling law (termed isoscaling) applies for a variety of reaction mechanisms that are dominated by phase space, including evaporation, multifragmentation, and deeply inelastic scattering. The origins of this scaling behavior for the various reaction mechanisms are explained. For multifragmentation processes, the systematics is influenced by the density dependence of the asymmetry term of the equation of state.

In vitro susceptibility of 137 Candida sp. isolates from HIV positive patients to several antifungal drugs

Oropharyngeal candidiasis caused by various species of Candida is one of the most common infections in HIV seropositive or AIDS patients. Drug resistance among these yeasts is an increasing problem. We studied the frequency of resistance profile to fluconazole, itraconazole, ketoconazole, amphotericin B and terbinafine of 137 isolates of Candida sp. From HIV positive or AIDS patients with oropharyngeal candidiasis at Instituto de Inmunología, U.C.V. and the Hospital "Jose Ignacio Baldó", Caracas Venezuela, using the well diffusion susceptibility test (Magaldi et al.). We found that nearly 10% of C. albicans isolates were primarily fluconazole resistant, 45% of C. albicans isolates from patients with previous treatment were resistant to fluconazole, of which 93% showed cross-resistance to itraconazole, and even about 30% of C. tropicalis (n = 13) were resistant to fluconazole and/or itraconazole. To this respect, several recent reports have been described antifungal cross-resistance among azoles. Therefore, we consider that C. tropicalis should be added to the growing list of yeast in which antifungal drug resistance is common. This report could be useful for therapeutic aspect in AIDS patients with oral candidiasis.

Isospin fractionation in nuclear multifragmentation

Isotopic distributions for light particles and intermediate mass fragments have been measured for 112Sn+112Sn, 112Sn+124Sn, 124Sn+112Sn, and 124Sn+124Sn collisions at E/A = 50 MeV. Isotope, isotone, and isobar yield ratios are utilized to estimate the isotopic composition of the gas phase at freeze-out. Analyses within the equilibrium limit imply that the gas phase is enriched in neutrons relative to the liquid phase represented by bound nuclei. These observations suggest that neutron diffusion is commensurate with or more rapid than fragment production.

Using views for retrieving data from extremely heterogeneous databanks

Information in molecular biology or biology in general is contained in a multitude of different databanks each specializing in a certain area. This specialization is useful since it improves the maintainability of the data and the flexibility of the overall structure which until now manages to exist without almost any standards. However, information gathering from these extremely heterogeneous sources is difficult since the desired data may be scattered over many databanks. This paper presents the concept of views implemented in the retrieval system SRS that uses links between databanks and a sophisticated parsing engine for information extraction to provide a flexible way of searching and obtaining data across databank boundaries. The implementation provides homogeneous access to all databanks using two types of views: the list-view which displays selected data-fields in their original format and the table-view available for HTML and plain ASCII text which tries to represent the data in a format independent from that of the source databank.