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Lenka G, Shan J, Halabi N, Abuaqel SWJ, Goswami N, Schmidt F, Zaghlool S, Romero AR, Subramanian M, Boujassoum S, Al‐Bozom I, Gehani S, Khori NA, Bedognetti D, Suhre K, Ma X, Dömling A, Rafii A, Chouchane L. STXBP6, reciprocally regulated with autophagy, reduces triple negative breast cancer aggressiveness. Clin Transl Med 2020. [PMCID: PMC7418817 DOI: 10.1002/ctm2.147] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Affiliation(s)
- Govinda Lenka
- Department of Microbiology and ImmunologyWeill Cornell Medicine New York USA
- Genetic Intelligence Laboratory, Weill Cornell Medicine‐QatarQatar Foundation Doha Qatar
| | - Jingxuan Shan
- Genetic Intelligence Laboratory, Weill Cornell Medicine‐QatarQatar Foundation Doha Qatar
- Department of Genetic MedicineWeill Cornell Medicine New York USA
| | - Najeeb Halabi
- Genetic Intelligence Laboratory, Weill Cornell Medicine‐QatarQatar Foundation Doha Qatar
- Department of Genetic MedicineWeill Cornell Medicine New York USA
| | - Sirin W J Abuaqel
- Department of Microbiology and ImmunologyWeill Cornell Medicine New York USA
- Genetic Intelligence Laboratory, Weill Cornell Medicine‐QatarQatar Foundation Doha Qatar
- Department of Genetic MedicineWeill Cornell Medicine New York USA
| | - Neha Goswami
- Proteomics Core, Weill Cornell Medicine‐QatarQatar Foundation Doha Qatar
| | - Frank Schmidt
- Proteomics Core, Weill Cornell Medicine‐QatarQatar Foundation Doha Qatar
| | - Shaza Zaghlool
- Bioinformatics Core, Weill Cornell Medicine‐QatarQatar foundation Doha Qatar
| | - Atilio Reyes Romero
- Drug Design Group, Department of PharmacyUniversity of Groningen Groningen Netherlands
| | - Murugan Subramanian
- Department of Microbiology and ImmunologyWeill Cornell Medicine New York USA
- Genetic Intelligence Laboratory, Weill Cornell Medicine‐QatarQatar Foundation Doha Qatar
- Department of Genetic MedicineWeill Cornell Medicine New York USA
| | - Salha Boujassoum
- Department of Medical OncologyNational Center for Cancer Care and ResearchHamad Medical Corporation Doha Qatar
| | - Issam Al‐Bozom
- Department of Laboratory Medicine and PathologyHamad Medical Corporation Doha Qatar
| | - Salah Gehani
- Department of SurgeryHamad Medical Corporation Doha Qatar
| | | | | | - Karsten Suhre
- Bioinformatics Core, Weill Cornell Medicine‐QatarQatar foundation Doha Qatar
| | - Xiaojing Ma
- Department of Microbiology and ImmunologyWeill Cornell Medicine New York USA
| | - Alexander Dömling
- Drug Design Group, Department of PharmacyUniversity of Groningen Groningen Netherlands
| | - Arash Rafii
- Genetic Intelligence Laboratory, Weill Cornell Medicine‐QatarQatar Foundation Doha Qatar
- Department of Genetic MedicineWeill Cornell Medicine New York USA
| | - Lotfi Chouchane
- Department of Microbiology and ImmunologyWeill Cornell Medicine New York USA
- Genetic Intelligence Laboratory, Weill Cornell Medicine‐QatarQatar Foundation Doha Qatar
- Department of Genetic MedicineWeill Cornell Medicine New York USA
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Ko PH, Lenka G, Chen YA, Chuang EY, Tsai MH, Sher YP, Lai LC. Semaphorin 5A suppresses the proliferation and migration of lung adenocarcinoma cells. Int J Oncol 2019; 56:165-177. [PMID: 31789397 PMCID: PMC6910195 DOI: 10.3892/ijo.2019.4932] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2019] [Accepted: 11/13/2019] [Indexed: 12/26/2022] Open
Abstract
Semaphorin 5A (SEMA5A), a member of the semaphorin family, plays an important role in axonal guidance. Previously, the authors identified another possible role of SEMA5A as a prognostic biomarker for non-smoking women with lung adenocarcinoma in Taiwan, and this phenomenon has been validated in other ethnic groups. However, the functional significance of SEMA5A in lung adenocarcinoma remains unclear. Therefore, we assessed the function of SEMA5A in three lung adenocarcinoma cell lines in this study. Kaplan-Meier Plotter for lung cancer was conducted for survival analyses. Reverse transcription-quantitative PCR (RT-qPCR) and western blot analysis were performed to investigate the expression and post-translational regulation of SEMA5A in lung adenocar-cinoma cell lines. A pre-designed PyroMark CpG assay and 5-aza-2′-deoxycytidine treatment were used to measure the methylation levels of SEMA5A. The biological functions of lung adenocarcinoma cells overexpressing SEMA5A were investigated by microarrays, and validated both in vitro (proliferation, colony formation and migration assays) and in vivo (tumor xenografts) experiments. The results revealed that the hypermethylation of SEMA5A and the cleavage of the extracellular domain of SEMA5A were responsible for the downregulation of the SEMA5A levels in lung adenocarcinoma cells (A549 and H1299) as compared to the normal controls. Functional analysis of SEMA5A-regulated genes revealed that they were involved in cellular growth and proliferation. The overexpression of SEMA5A in A549 and H1299 cells significantly decreased the proliferation (P<0.01), colony formation (P<0.001) and migratory ability (P<0.01) of the cells. The suppressive effects of SEMA5A on the proliferative and migratory ability of the cells were also observed in both in vitro and in vivo experiments using brain metastatic Bm7 lung adenocarcinoma cells. On the whole, the findings of this study suggest a suppressive role for SEMA5A in lung adenocarcinoma involving the inhibition of the proliferation and migration of lung transformed cells.
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Affiliation(s)
- Pin-Hao Ko
- Graduate Institute of Physiology, College of Medicine, National Taiwan University, Taipei 10051, Taiwan, R.O.C
| | - Govinda Lenka
- Graduate Institute of Physiology, College of Medicine, National Taiwan University, Taipei 10051, Taiwan, R.O.C
| | - Yu-An Chen
- Bioinformatics and Biostatistics Core, Center of Genomic and Precision Medicine, National Taiwan University, Taipei 10055, Taiwan, R.O.C
| | - Eric Y Chuang
- Bioinformatics and Biostatistics Core, Center of Genomic and Precision Medicine, National Taiwan University, Taipei 10055, Taiwan, R.O.C
| | - Mong-Hsun Tsai
- Bioinformatics and Biostatistics Core, Center of Genomic and Precision Medicine, National Taiwan University, Taipei 10055, Taiwan, R.O.C
| | - Yuh-Pyng Sher
- Graduate Institute of Clinical Medical Science, China Medical University, Taichung 40402, Taiwan, R.O.C
| | - Liang-Chuan Lai
- Graduate Institute of Physiology, College of Medicine, National Taiwan University, Taipei 10051, Taiwan, R.O.C
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Lenka G, Shan J, Abuaqel S, Chouchane L. Abstract C120: The tumor suppressor role of STXBP6 in triple negative breast cancer. Mol Cancer Ther 2019. [DOI: 10.1158/1535-7163.targ-19-c120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
Triple negative breast cancer (TNBC) is a subtype of breast cancer (BC) that accounts for approximately 15–20% of all BCs. Additionally, TNBC presents with a poor prognosis mainly due to the lack of effective therapeutic options. For this reason, numerous studies have focused to find the potential molecular targets. Syntaxin binding protein 6, encoded by STXBP6, was initially identified in regulating the formation of the SNARE complex and cytogenesis. It has been reported to be associated with many diseases, such as diabetes, autism and systemic lupus erythematosus. However, there are no studies revealing its biological role and its epigenetic regulation in TNBC. Thus, herein we aim to demonstrate antitumor implications of STXBP6 in TNBC. In this study first, we explored the clinical significance of STXBP6 in cancer. Pan-cancer profiling using TCGA data sets identified aberrant expression of STXBP6 in different cancer types. Importantly, we identified significant down regulation of STXBP6 in TNBC samples. Moreover, significantly improved survival rates were observed in patients when STXBP6 expression levels high. The concurrent analysis between gene expression and methylation of STXBP6 highlighted a clear negative correlation. When the luminal subtype and TNBC subtype of BC cells were treated with demethylating agent 5-aza-2’-deoxycytidine, we observed an increase in the expression of STXBP6 in TNBC cells only which further support the regulatory role of DNA methylation in the control of STXBP6 expression in TNBC. Next, we elucidated the function of STXBP6 in TNBC cells. Overexpression of STXBP6 in TNBC cells significantly decreased cell proliferation, colony formation and increased apoptosis. In summary, these findings highlight the suppression effect of STXBP6 on TNBC progression and could be a novel prognostic and therapeutic target for TNBC in the future. Key Words: STXBP6, Gene Expression, Methylation, Tumor Suppressor, Triple Negative Breast Cancer.
Citation Format: Govinda Lenka, Jingxuan Shan, Sirin Abuaqel, Lotfi Chouchane. The tumor suppressor role of STXBP6 in triple negative breast cancer [abstract]. In: Proceedings of the AACR-NCI-EORTC International Conference on Molecular Targets and Cancer Therapeutics; 2019 Oct 26-30; Boston, MA. Philadelphia (PA): AACR; Mol Cancer Ther 2019;18(12 Suppl):Abstract nr C120. doi:10.1158/1535-7163.TARG-19-C120
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Lenka G, Tsai MH, Hsiao JH, Lai LC, Chuang EY. Overexpression of methylation-driven DCC suppresses proliferation of lung cancer cells. Transl Cancer Res 2016. [DOI: 10.21037/tcr.2016.04.08] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Lenka G, Weng WH, Chuang CK, Ng KF, Pang ST. Aberrant expression of the PRAC gene in prostate cancer. Int J Oncol 2013; 43:1960-6. [PMID: 24100630 DOI: 10.3892/ijo.2013.2117] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2013] [Accepted: 08/23/2013] [Indexed: 11/06/2022] Open
Abstract
Identification of aberrant expression patterns of genes in prostate cancer (PCa) is a key step towards the development of effective therapies. Prostate-specific antigen (PSA) levels are commonly measured for the early detection of PCa, but which itself is still not an ideal biomarker. We analysed the expression patterns of prostate cancer susceptibility candidate (PRAC) in prostate cancer. The PRAC gene is known to be commonly expressed in prostate tissue, rectum and colon. To provide clear insights into the expression patterns of PRAC in PCa, we examined the gene expression by quantitative real-time PCR (qRT-PCR), western blot analysis and immunohistochemistry (IHC). The results showed that PRAC expression levels in androgen‑insensitive cells (DU145 and PC3) are lower than those in androgen-sensitive cell lines (LNCaP, LNCaP-R and CW22R). However, treatment of the LNCaP cell line with androgen and anti-androgen demonstrated that PRAC is expressed in an androgen-independent manner. Further, PRAC expression was restored upon treatment of DU145 and PC3 cells with the methyltransferase inhibitor, 5-aza-2'-deoxycytidine (5-aza-CdR), which indicates the effect of methylation in the control of PRAC expression. In addition, IHC analysis revealed a significantly decreased immunoreactivity of PRAC protein in PCa tissues compared to benign prostatic hyperplasia (BPH) (p<0.0001). Thus, our findings suggest that the pathogenesis of PCa may be due to the expression levels of PRAC protein, and this protein can serve as a potential biomarker for the management of PCa.
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Affiliation(s)
- Govinda Lenka
- Department of Chemical Engineering and Biotechnology, Institute of Biochemical and Biomedical Engineering, National Taipei University of Technology, Taipei, Taiwan, R.O.C
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Yeh CN, Weng WH, Lenka G, Tsao LC, Chiang KC, Pang ST, Chen TW, Jan YY, Chen MF. cDNA microarray profiling of rat cholangiocarcinoma induced by thioacetamide. Mol Med Rep 2013; 8:350-60. [PMID: 23754683 DOI: 10.3892/mmr.2013.1516] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2013] [Accepted: 05/14/2013] [Indexed: 11/06/2022] Open
Abstract
Cholangiocarcinoma (CCA) is a malignant neoplasm affecting thousands of individuals worldwide. CCA develops through a multistep process. In the current study, an oral thioacetamide (TAA)‑induced model of rat CCA was established which generates the histological progression of human CCA, particularly the mass‑forming type. Seven male Sprague‑Dawley rats were treated with TAA for 24 weeks to induce CCA. Following the generation of the rat CCA model, whole rat genomic oligo microarray was performed to examine gene expression profiles in CCA and non‑cancerous liver samples. In brief, 10,427 genes were found to be differentially expressed (8,318 upregulated and 3,489 downregulated) in CCA compared with non‑tumor liver tissue. The top 50 genes (upregulated or downregulated) were selected and their functional involvement in various pathways associated with cancer progression was analyzed, including cell proliferation, apoptosis, metabolism and the cell cycle. In addition, increased expression of CLCA3, COL1A2, DCN, GLIPr2 and NID1, and decreased expression of CYP2C7 and SLC10A1 were validated by quantitative real‑time PCR. Immunohistochemical analysis was performed to determine the protein expression levels of GLIPr2 and SLC10A1. The gene expression profiling performed in this study provides a unique opportunity for understanding the carcinogenesis of TAA‑induced CAA. In addition, expression profiling of a number of specific genes is likely to provide important novel biomarkers for the diagnosis of CCA and the development of novel therapeutic strategies for CCA.
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Affiliation(s)
- Chun-Nan Yeh
- Department of Surgery, Chang Gung Memorial Hospital, Chang Gung University, Linkou 333, Taiwan, R.O.C
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Weng WH, Yeh CN, Cheng YF, Lenka G, Liaw YW. Phosphorylated T567 ezrin is associated with merlin expression in KIT-mutant gastrointestinal stromal tumors. Mol Med Rep 2011; 5:17-21. [PMID: 21971708 DOI: 10.3892/mmr.2011.609] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2011] [Accepted: 09/13/2011] [Indexed: 11/05/2022] Open
Abstract
Membrane-cytoskeleton linker organizer ezrin is a member of the ERM (ezrin-radixin-moesin) protein family. It has been suggested as an important element in the oncogenic process, particularly in conferring a metastatic ability on tumor cells. We hypothesized that the KIT oncogenic form is one of the proteins that modulates expression of the ezrin protein via phosphorylated ezrin at different residues; furthermore, it may interact with the protein merlin, and promoting tumor development via the PI3K or MAPK pathway. In the present study, we observed that differential expression of ezrin was a common feature in gastrointestinal stromal tumors (GISTs). We further demonstrated that cases exhibiting expression of phosphorylated Thr567 in the ezrin protein were associated with immunoactivities of KIT and merlin expression (p=0.039 and 0.013, respectively). In conclusion, GISTs harbor activation of KIT protein may induce phosphorylation of the downstream protein ezrin at certain residues, thereby triggering subsequent signal transduction cascades and driving downstream pathways of tumor progression. However, a larger series of tumor samples should be analyzed in future studies, as well as the identification of phosphorylated sites to determine the role of ezrin in tumor progression thus shedding light on clinical outcomes.
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Affiliation(s)
- Wen-Hui Weng
- Department of Chemical Engineering and Biotechnology, Graduate Institute of Biotechnology, National Taipei University of Technology, Taipei 10608, Taiwan, ROC.
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Sonawane PJ, Sahu BS, Sasi BK, Geedi P, Lenka G, Mahapatra NR. Functional promoter polymorphisms govern differential expression of HMG-CoA reductase gene in mouse models of essential hypertension. PLoS One 2011; 6:e16661. [PMID: 21304971 PMCID: PMC3031630 DOI: 10.1371/journal.pone.0016661] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2010] [Accepted: 01/10/2011] [Indexed: 11/18/2022] Open
Abstract
3-Hydroxy-3-methylglutaryl-coenzyme A [HMG-CoA] reductase gene (Hmgcr) is a susceptibility gene for essential hypertension. Sequencing of the Hmgcr locus in genetically hypertensive BPH (blood pressure high), genetically hypotensive BPL (blood pressure low) and genetically normotensive BPN (blood pressure normal) mice yielded a number of single nucleotide polymorphisms (SNPs). BPH/BPL/BPN Hmgcr promoter-luciferase reporter constructs were generated and transfected into liver HepG2, ovarian CHO, kidney HEK-293 and neuronal N2A cells for functional characterization of the promoter SNPs. The BPH-Hmgcr promoter showed significantly less activity than the BPL-Hmgcr promoter under basal as well as nicotine/cholesterol-treated conditions. This finding was consistent with lower endogenous Hmgcr expression in liver and lower plasma cholesterol in BPH mice. Transfection experiments using 5′-promoter deletion constructs (strategically made to assess the functional significance of each promoter SNP) and computational analysis predicted lower binding affinities of transcription factors c-Fos, n-Myc and Max with the BPH-promoter as compared to the BPL-promoter. Corroboratively, the BPH promoter-luciferase reporter construct co-transfected with expression plasmids of these transcription factors displayed less pronounced augmentation of luciferase activity than the BPL construct, particularly at lower amounts of transcription factor plasmids. Electrophoretic mobility shift assays also showed diminished interactions of the BPH promoter with HepG2 nuclear proteins. Taken together, this study provides mechanistic basis for the differential Hmgcr expression in these mouse models of human essential hypertension and have implications for better understanding the role of this gene in regulation of blood pressure.
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Affiliation(s)
- Parshuram J. Sonawane
- Cardiovascular Genetics Laboratory, Department of Biotechnology, Indian Institute of Technology Madras, Chennai, India
| | - Bhavani S. Sahu
- Cardiovascular Genetics Laboratory, Department of Biotechnology, Indian Institute of Technology Madras, Chennai, India
| | - Binu K. Sasi
- Cardiovascular Genetics Laboratory, Department of Biotechnology, Indian Institute of Technology Madras, Chennai, India
| | - Parimala Geedi
- Cardiovascular Genetics Laboratory, Department of Biotechnology, Indian Institute of Technology Madras, Chennai, India
| | - Govinda Lenka
- Cardiovascular Genetics Laboratory, Department of Biotechnology, Indian Institute of Technology Madras, Chennai, India
| | - Nitish R. Mahapatra
- Cardiovascular Genetics Laboratory, Department of Biotechnology, Indian Institute of Technology Madras, Chennai, India
- * E-mail:
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