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Pretini N, Vanzetti LS, Terrile II, Donaire G, González FG. Mapping QTL for spike fertility and related traits in two doubled haploid wheat (Triticum aestivum L.) populations. BMC Plant Biol 2021; 21:353. [PMID: 34311707 PMCID: PMC8314532 DOI: 10.1186/s12870-021-03061-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Accepted: 05/23/2021] [Indexed: 06/02/2023]
Abstract
BACKGROUND In breeding programs, the selection of cultivars with the highest yield potential consisted in the selection of the yield per se, which resulted in cultivars with higher grains per spike (GN) and occasionally increased grain weight (GW) (main numerical components of the yield). In this study, quantitative trait loci (QTL) for GW, GN and spike fertility traits related to GN determination were mapped using two doubled haploid (DH) populations (Baguette Premium 11 × BioINTA 2002 and Baguette 19 × BioINTA 2002). RESULTS In total 305 QTL were identified for 14 traits, out of which 12 QTL were identified in more than three environments and explained more than 10% of the phenotypic variation in at least one environment. Eight hotspot regions were detected on chromosomes 1A, 2B, 3A, 5A, 5B, 7A and 7B in which at least two major and stable QTL sheared confidence intervals. QTL on two of these regions (R5A.1 and R5A.2) have previously been described, but the other six regions are novel. CONCLUSIONS Based on the pleiotropic analysis within a robust physiological model we conclude that two hotspot genomic regions (R5A.1 and R5A.2) together with the QGW.perg-6B are of high relevance to be used in marker assisted selection in order to improve the spike yield potential. All the QTL identified for the spike related traits are the first step to search for their candidate genes, which will allow their better manipulation in the future.
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Affiliation(s)
- Nicole Pretini
- Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires (CITNOBA, CONICET-UNNOBA-UNSADA), Monteagudo 2772 CP 2700, Pergamino, Buenos Aires, Argentina.
| | - Leonardo S Vanzetti
- Instituto Nacional de Tecnología Agropecuaria (INTA), EEA INTA Marcos Juárez. Ruta 12 s/n CP 2850, Marcos Juárez, Córdoba, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Godoy Cruz 2290 CP C1425FQB, Buenos Aires, Argentina
| | - Ignacio I Terrile
- Instituto Nacional de Tecnología Agropecuaria (INTA), EEA INTA Pergamino. Ruta 32, km 4,5 CP 2700, Pergamino, Buenos Aires, Argentina
| | - Guillermo Donaire
- Instituto Nacional de Tecnología Agropecuaria (INTA), EEA INTA Marcos Juárez. Ruta 12 s/n CP 2850, Marcos Juárez, Córdoba, Argentina
| | - Fernanda G González
- Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires (CITNOBA, CONICET-UNNOBA-UNSADA), Monteagudo 2772 CP 2700, Pergamino, Buenos Aires, Argentina
- Instituto Nacional de Tecnología Agropecuaria (INTA), EEA INTA Pergamino. Ruta 32, km 4,5 CP 2700, Pergamino, Buenos Aires, Argentina
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Pretini N, Vanzetti LS, Terrile II, Börner A, Plieske J, Ganal M, Röder M, González FG. Identification and validation of QTL for spike fertile floret and fruiting efficiencies in hexaploid wheat (Triticum aestivum L.). Theor Appl Genet 2020; 133:2655-2671. [PMID: 32518991 DOI: 10.1007/s00122-020-03623-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2020] [Accepted: 05/22/2020] [Indexed: 06/11/2023]
Abstract
This study identified and validated two QTL associated with spike fertile floret and fruiting efficiencies. They represent two new loci to use in MAS to improve wheat yield potential. The spike fruiting efficiency (FE-grains per unit spike dry weight at anthesis, GN/SDW) is a promising trait to improve wheat yield potential. It depends on fertile floret efficiency (fertile florets per unit SDW-FFE, FF/SDW) and grain set (grains per fertile floret-GST). Given its difficult measurement, it is often estimated as the grains per unit of nongrain spike dry weight at maturity (FEm). In this study, quantitative trait loci (QTL) were mapped using a double haploid population (Baguette 19/BIOINTA 2002, with high and low FE, respectively) genotyped with the iSelect 90 K SNP array and evaluated in five environments. We identified 37 QTL, but two were major with an R2 > 10% and stable for being at least present in three environments: the QFEm.perg-3A (on Chr. 3A, 51.6 cM, 685.12 Mb) for FEm and the QFFE.perg-5A (on Chr. 5A, 42.1 cM, 461.49 Mb) for FFE, FE and FEm. Both QTL were validated using two independent F2 populations and KASP markers. For the most promising QTL, QFFE.perg-5A, the presence of the allele for high FFE resulted in + 4% FF, + 9% GN, + 13% GST, + 16% yield gSDW-1 and + 5% yield spike-1. QFEm.perg-3A and QFFE.perg-5A represent two new loci to use in MAS to improve wheat yield potential.
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Affiliation(s)
- Nicole Pretini
- Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires (CITNOBA, CONICET-UNNOBA-UNSADA), Monteagudo 2772, CP 2700, Pergamino, Buenos Aires, Argentina.
| | - Leonardo S Vanzetti
- Instituto Nacional de Tecnología Agropecuaria (INTA), EEA Marcos Juárez. Ruta 12 s/n, CP 2850, Marcos Juárez, Córdoba, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Godoy Cruz 2290, CP C1425FQB, Buenos Aires, Argentina
| | - Ignacio I Terrile
- Instituto Nacional de Tecnología Agropecuaria (INTA), EEA Pergamino. Ruta 32, km 4,5, CP 2700, Pergamino, Buenos Aires, Argentina
| | - Andreas Börner
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrassen 3, 06466, OT Gatersleben, Germany
| | - Jörg Plieske
- Trait Genetics GmbH, Am Schwabeplan 1b, 06466, OT Gatersleben, Germany
| | - Martin Ganal
- Trait Genetics GmbH, Am Schwabeplan 1b, 06466, OT Gatersleben, Germany
| | - Marion Röder
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrassen 3, 06466, OT Gatersleben, Germany
| | - Fernanda G González
- Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires (CITNOBA, CONICET-UNNOBA-UNSADA), Monteagudo 2772, CP 2700, Pergamino, Buenos Aires, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Godoy Cruz 2290, CP C1425FQB, Buenos Aires, Argentina
- Instituto Nacional de Tecnología Agropecuaria (INTA), EEA Pergamino. Ruta 32, km 4,5, CP 2700, Pergamino, Buenos Aires, Argentina
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Reynolds MP, Pask AJD, Hoppitt WJE, Sonder K, Sukumaran S, Molero G, Pierre CS, Payne T, Singh RP, Braun HJ, Gonzalez FG, Terrile II, Barma NCD, Hakim A, He Z, Fan Z, Novoselovic D, Maghraby M, Gad KIM, Galal EG, Hagras A, Mohamed MM, Morad AFA, Kumar U, Singh GP, Naik R, Kalappanavar IK, Biradar S, Sai Prasad SV, Chatrath R, Sharma I, Panchabhai K, Sohu VS, Mavi GS, Mishra VK, Balasubramaniam A, Jalal-Kamali MR, Khodarahmi M, Dastfal M, Tabib-Ghaffari SM, Jafarby J, Nikzad AR, Moghaddam HA, Ghojogh H, Mehraban A, Solís-Moya E, Camacho-Casas MA, Figueroa-López P, Ireta-Moreno J, Alvarado-Padilla JI, Borbón-Gracia A, Torres A, Quiche YN, Upadhyay SR, Pandey D, Imtiaz M, Rehman MU, Hussain M, Hussain M, Ud-Din R, Qamar M, Sohail M, Mujahid MY, Ahmad G, Khan AJ, Sial MA, Mustatea P, von Well E, Ncala M, de Groot S, Hussein AHA, Tahir ISA, Idris AAM, Elamein HMM, Manes Y, Joshi AK. Correction to: Strategic crossing of biomass and harvest index-source and sink-achieves genetic gains in wheat. Euphytica 2018; 214:9. [PMID: 31187787 DOI: 10.1007/s10681-017-2040-z] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2017] [Accepted: 10/13/2017] [Indexed: 05/22/2023]
Abstract
[This corrects the article DOI: 10.1007/s10681-017-2040-z.].
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Affiliation(s)
- Matthew P Reynolds
- 1International Maize and Wheat Improvement Center (CIMMYT), Apdo, 6-641, 06600 Mexico, DF Mexico
| | - Alistair J D Pask
- 1International Maize and Wheat Improvement Center (CIMMYT), Apdo, 6-641, 06600 Mexico, DF Mexico
| | | | - Kai Sonder
- 1International Maize and Wheat Improvement Center (CIMMYT), Apdo, 6-641, 06600 Mexico, DF Mexico
| | - Sivakumar Sukumaran
- 1International Maize and Wheat Improvement Center (CIMMYT), Apdo, 6-641, 06600 Mexico, DF Mexico
| | - Gemma Molero
- 1International Maize and Wheat Improvement Center (CIMMYT), Apdo, 6-641, 06600 Mexico, DF Mexico
| | - Carolina Saint Pierre
- 1International Maize and Wheat Improvement Center (CIMMYT), Apdo, 6-641, 06600 Mexico, DF Mexico
| | - Thomas Payne
- 1International Maize and Wheat Improvement Center (CIMMYT), Apdo, 6-641, 06600 Mexico, DF Mexico
| | - Ravi P Singh
- 1International Maize and Wheat Improvement Center (CIMMYT), Apdo, 6-641, 06600 Mexico, DF Mexico
| | - Hans J Braun
- 1International Maize and Wheat Improvement Center (CIMMYT), Apdo, 6-641, 06600 Mexico, DF Mexico
| | | | - Ignacio I Terrile
- 3Instituto Nacional de Tecnología Agropecuaria, Pergamino, Argentina
| | - Naresh C D Barma
- 4Bangladesh Agricultural Research Institute, Gazipur, Bangladesh
| | - Abdul Hakim
- 4Bangladesh Agricultural Research Institute, Gazipur, Bangladesh
| | | | - Zheru Fan
- 6Xinjiang Academy of Agricultural Science, Wulumuqi, China
| | | | | | | | | | - Adel Hagras
- Field Crops Research Institute, Cairo, Egypt
| | | | | | | | | | - Rudra Naik
- 12University of Agricultural Sciences, Dharwad, India
| | | | - Suma Biradar
- 12University of Agricultural Sciences, Dharwad, India
| | | | - Ravish Chatrath
- Indian Institute of Wheat and Barley Research, Karnal, India
| | - Indu Sharma
- Indian Institute of Wheat and Barley Research, Karnal, India
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Ernesto Solís-Moya
- 21Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias, Mexico, Mexico
| | - Miguel A Camacho-Casas
- 21Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias, Mexico, Mexico
| | - Pedro Figueroa-López
- 21Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias, Mexico, Mexico
| | - Javier Ireta-Moreno
- 21Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias, Mexico, Mexico
| | | | - Alberto Borbón-Gracia
- 21Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias, Mexico, Mexico
| | | | | | | | - Deepak Pandey
- Nepal Agriculture Research Council, Bhairahawa, Nepal
| | | | | | - Manzoor Hussain
- Regional Agricultural Research Institute, Bahawalpur, Pakistan
| | - Makhdoom Hussain
- 26Wheat Research Institute, Ayub Agricultural Research Institute, Faisalabad, Pakistan
| | - Riaz Ud-Din
- Crop Sciences Research Institute, National Agricultural Research Council, Islamabad, Pakistan
| | - Maqsood Qamar
- Crop Sciences Research Institute, National Agricultural Research Council, Islamabad, Pakistan
| | - Muhammad Sohail
- Crop Sciences Research Institute, National Agricultural Research Council, Islamabad, Pakistan
| | - Muhammad Y Mujahid
- Crop Sciences Research Institute, National Agricultural Research Council, Islamabad, Pakistan
| | - Gulzar Ahmad
- Cereal Crop Research Institute, Nowshera-Pirsabak, Pakistan
| | - Abdul J Khan
- Nuclear Institute for Food and Agriculture, Tarnab-Peshawar, Pakistan
| | | | - Pompiliu Mustatea
- National Agricultural Research and Development Institute, Fundulea, Romania
| | | | - Moses Ncala
- Small Grain Institute, Bethlehem, South Africa
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Reynolds MP, Pask AJD, Hoppitt WJE, Sonder K, Sukumaran S, Molero G, Pierre CS, Payne T, Singh RP, Braun HJ, Gonzalez FG, Terrile II, Barma NCD, Hakim A, He Z, Fan Z, Novoselovic D, Maghraby M, Gad KIM, Galal EG, Hagras A, Mohamed MM, Morad AFA, Kumar U, Singh GP, Naik R, Kalappanavar IK, Biradar S, Sai Prasad SV, Chatrath R, Sharma I, Panchabhai K, Sohu VS, Mavi GS, Mishra VK, Balasubramaniam A, Jalal-Kamali MR, Khodarahmi M, Dastfal M, Tabib-Ghaffari SM, Jafarby J, Nikzad AR, Moghaddam HA, Ghojogh H, Mehraban A, Solís-Moya E, Camacho-Casas MA, Figueroa-López P, Ireta-Moreno J, Alvarado-Padilla JI, Borbón-Gracia A, Torres A, Quiche YN, Upadhyay SR, Pandey D, Imtiaz M, Rehman MU, Hussain M, Hussain M, Ud-Din R, Qamar M, Sohail M, Mujahid MY, Ahmad G, Khan AJ, Sial MA, Mustatea P, von Well E, Ncala M, de Groot S, Hussein AHA, Tahir ISA, Idris AAM, Elamein HMM, Manes Y, Joshi AK. Correction to: Strategic crossing of biomass and harvest index-source and sink-achieves genetic gains in wheat. Euphytica 2017; 214:9. [PMID: 31187787 PMCID: PMC6445510 DOI: 10.1007/s10681-017-2086-y] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2017] [Accepted: 10/13/2017] [Indexed: 05/24/2023]
Abstract
[This corrects the article DOI: 10.1007/s10681-017-2040-z.].
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Affiliation(s)
- Matthew P. Reynolds
- International Maize and Wheat Improvement Center (CIMMYT), Apdo, 6-641, 06600 Mexico, DF Mexico
| | - Alistair J. D. Pask
- International Maize and Wheat Improvement Center (CIMMYT), Apdo, 6-641, 06600 Mexico, DF Mexico
| | | | - Kai Sonder
- International Maize and Wheat Improvement Center (CIMMYT), Apdo, 6-641, 06600 Mexico, DF Mexico
| | - Sivakumar Sukumaran
- International Maize and Wheat Improvement Center (CIMMYT), Apdo, 6-641, 06600 Mexico, DF Mexico
| | - Gemma Molero
- International Maize and Wheat Improvement Center (CIMMYT), Apdo, 6-641, 06600 Mexico, DF Mexico
| | - Carolina Saint Pierre
- International Maize and Wheat Improvement Center (CIMMYT), Apdo, 6-641, 06600 Mexico, DF Mexico
| | - Thomas Payne
- International Maize and Wheat Improvement Center (CIMMYT), Apdo, 6-641, 06600 Mexico, DF Mexico
| | - Ravi P. Singh
- International Maize and Wheat Improvement Center (CIMMYT), Apdo, 6-641, 06600 Mexico, DF Mexico
| | - Hans J. Braun
- International Maize and Wheat Improvement Center (CIMMYT), Apdo, 6-641, 06600 Mexico, DF Mexico
| | | | | | | | - Abdul Hakim
- Bangladesh Agricultural Research Institute, Gazipur, Bangladesh
| | | | - Zheru Fan
- Xinjiang Academy of Agricultural Science, Wulumuqi, China
| | | | | | | | | | - Adel Hagras
- Field Crops Research Institute, Cairo, Egypt
| | | | | | | | | | - Rudra Naik
- University of Agricultural Sciences, Dharwad, India
| | | | - Suma Biradar
- University of Agricultural Sciences, Dharwad, India
| | | | - Ravish Chatrath
- Indian Institute of Wheat and Barley Research, Karnal, India
| | - Indu Sharma
- Indian Institute of Wheat and Barley Research, Karnal, India
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Ernesto Solís-Moya
- Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias, Mexico, Mexico
| | | | - Pedro Figueroa-López
- Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias, Mexico, Mexico
| | - Javier Ireta-Moreno
- Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias, Mexico, Mexico
| | | | - Alberto Borbón-Gracia
- Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias, Mexico, Mexico
| | | | | | | | - Deepak Pandey
- Nepal Agriculture Research Council, Bhairahawa, Nepal
| | | | | | - Manzoor Hussain
- Regional Agricultural Research Institute, Bahawalpur, Pakistan
| | - Makhdoom Hussain
- Wheat Research Institute, Ayub Agricultural Research Institute, Faisalabad, Pakistan
| | - Riaz Ud-Din
- Crop Sciences Research Institute, National Agricultural Research Council, Islamabad, Pakistan
| | - Maqsood Qamar
- Crop Sciences Research Institute, National Agricultural Research Council, Islamabad, Pakistan
| | - Muhammad Sohail
- Crop Sciences Research Institute, National Agricultural Research Council, Islamabad, Pakistan
| | - Muhammad Y. Mujahid
- Crop Sciences Research Institute, National Agricultural Research Council, Islamabad, Pakistan
| | - Gulzar Ahmad
- Cereal Crop Research Institute, Nowshera-Pirsabak, Pakistan
| | - Abdul J. Khan
- Nuclear Institute for Food and Agriculture, Tarnab-Peshawar, Pakistan
| | | | - Pompiliu Mustatea
- National Agricultural Research and Development Institute, Fundulea, Romania
| | | | - Moses Ncala
- Small Grain Institute, Bethlehem, South Africa
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Slafer GA, Elia M, Savin R, García GA, Terrile II, Ferrante A, Miralles DJ, González FG. Fruiting efficiency: an alternative trait to further rise wheat yield. Food Energy Secur 2015. [DOI: 10.1002/fes3.59] [Citation(s) in RCA: 93] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Affiliation(s)
- Gustavo A. Slafer
- Department of Crop and Forest Sciences and AGROTECNIO (Center for Research in Agrotechnology)University of Lleida Av. Rovira Roure 19125198LleidaSpain
- ICREA Catalonian Institution for Research and Advanced Studies Spain
| | - Mónica Elia
- Department of Crop and Forest Sciences and AGROTECNIO (Center for Research in Agrotechnology)University of Lleida Av. Rovira Roure 19125198LleidaSpain
| | - Roxana Savin
- Department of Crop and Forest Sciences and AGROTECNIO (Center for Research in Agrotechnology)University of Lleida Av. Rovira Roure 19125198LleidaSpain
| | - Guillermo A. García
- IFEVA and Department of Plant ProductionFaculty of AgronomyUniversity of Buenos Aires Av. San Martin 4453C1417DSE Buenos AiresArgentina
- CONICET (National Scientific and Technical Research Council) Buenos Aires, Argentina
| | - Ignacio I. Terrile
- EEA Pergamino INTA (National Institute for Agricultural Technology) Ruta 32 km 4.5 B2700WAA Pergamino Argentina
| | - Ariel Ferrante
- Queensland Alliance for Agriculture and Food Innovation (QAAFI)The University of Queensland P.O. Box 102ToowoombaQueensland4350Australia
| | - Daniel J. Miralles
- IFEVA and Department of Plant ProductionFaculty of AgronomyUniversity of Buenos Aires Av. San Martin 4453C1417DSE Buenos AiresArgentina
- CONICET (National Scientific and Technical Research Council) Buenos Aires, Argentina
| | - Fernanda G. González
- CONICET (National Scientific and Technical Research Council) Buenos Aires, Argentina
- EEA Pergamino INTA (National Institute for Agricultural Technology) Ruta 32 km 4.5 B2700WAA Pergamino Argentina
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