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Makura A, Manasa J, Mhandire K, Mutsvangwa J, Manjoro A, Matarira H. T282 Evaluation of Dried Blood Spots (DBS) for human immunodeficiency virus (HIV-1) drug resistance testing in Zimbabwe…
(Preliminary results). Clin Chim Acta 2022. [DOI: 10.1016/j.cca.2022.04.094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Chipinduro M, Timire C, Chirenda J, Matambo R, Munemo E, Makamure B, Nhidza AF, Tinago W, Chikwasha V, Ngwenya M, Mutsvangwa J, Metcalfe JZ, Sandy C. TB prevalence in Zimbabwe: a national cross-sectional survey, 2014. Int J Tuberc Lung Dis 2022; 26:57-64. [PMID: 34969430 DOI: 10.5588/ijtld.21.0341] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND: We conducted the first national TB prevalence survey to provide accurate estimates of bacteriologically confirmed pulmonary TB disease among adults aged ≥15 years in 2014.METHODS: A TB symptoms screen and chest X-ray (CXR) were used to identify presumptive TB cases who submitted two sputum samples for smear microscopy, liquid and solid culture. Bacteriological confirmation included acid-fast bacilli smear positivity confirmed using Xpert® MTB/RIF and/or culture. Prevalence estimates were calculated using random effects logistic regression with multiple imputations and inverse probability weighting.RESULTS: Of 43,478 eligible participants, 33,736 (78%) were screened; of these 5,820 (17%) presumptive cases were identified. There were 107 (1.9%) bacteriologically confirmed TB cases, of which 23 (21%) were smear-positive. The adjusted prevalences of smear-positive and bacteriologically confirmed TB disease were respectively 82/100,000 population (95% CI 47-118/100,000) and 344/100,000 (95% CI 268-420/100,000), with an overall all-ages, all-forms TB prevalence of 275/100,000 population (95% CI 217-334/100,000). TB prevalence was higher in males, and age groups 35-44 and ≥65 years. CXR identified 93/107 (87%) cases vs. 39/107 (36%) using the symptom screen.CONCLUSION: Zimbabwe TB disease prevalence has decreased relative to prior estimates, possibly due to increased antiretroviral therapy coverage and successful national TB control strategies. Continued investments in TB diagnostics for improved case detection are required.
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Affiliation(s)
- M Chipinduro
- Department of Pathology, Faculty of Medicine and Health Sciences (FMHS), Midlands State University, Gweru, Zimbabwe
| | - C Timire
- International Union Against Tuberculosis and Lung Disease (The Union), Paris, France, National TB Control Programme, Ministry of Health and Child Care, Harare, Zimbabwe
| | - J Chirenda
- Department of Community Medicine, FMHS, University of Zimbabwe, Harare, Zimbabwe
| | - R Matambo
- Biomedical Research and Training Institute, Harare, Zimbabwe
| | - E Munemo
- National Microbiology Reference Laboratory, Harare, Zimbabwe
| | - B Makamure
- Biomedical Research and Training Institute, Harare, Zimbabwe
| | - A F Nhidza
- Biomedical Research and Training Institute, Harare, Zimbabwe
| | - W Tinago
- Department of Community Medicine, FMHS, University of Zimbabwe, Harare, Zimbabwe, School of Medicine, University College Dublin, Dublin, Ireland
| | - V Chikwasha
- Department of Community Medicine, FMHS, University of Zimbabwe, Harare, Zimbabwe
| | - M Ngwenya
- World Health Organisation, Harare Country Office, Zimbabwe
| | - J Mutsvangwa
- Biomedical Research and Training Institute, Harare, Zimbabwe
| | - J Z Metcalfe
- Division of Pulmonary and Critical Care Medicine, Zuckerberg San Francisco General Hospital and Trauma Center, University of California, San Francisco, CA, USA
| | - C Sandy
- National TB Control Programme, Ministry of Health and Child Care, Harare, Zimbabwe
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Zvinoera K, Olaru ID, Khan P, Mutsvangwa J, Denkinger CM, Kampira V, Coutinho D, Mutunzi H, Pepukai M, Chikaka E, Zinyowera S, Mharakurwa S, Kranzer K. The impact of changing the diagnostic algorithm for TB in Manicaland, Zimbabwe. Public Health Action 2021; 11:196-201. [PMID: 34956848 DOI: 10.5588/pha.21.0040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2021] [Accepted: 08/29/2021] [Indexed: 11/10/2022] Open
Abstract
SETTING Governmental health facilities performing TB diagnostics in Manicaland, Zimbabwe. OBJECTIVE To investigate the effect of making Xpert® MTB/RIF the primary TB diagnostic for all patients presenting with presumptive TB on 1) the number of samples investigated for TB, 2) the proportion testing TB-positive, and 3) the proportion of unsuccessful results over time. DESIGN This retrospective study used data from GeneX-pert downloads, laboratory registers and quality assurance reports between 1 January 2017 and 31 December 2018. RESULTS The total number of Xpert tests performed in Manicaland increased from 3,967 in the first quarter of 2017 to 7,011 in the last quarter of 2018. Mycobacterium tuberculosis DNA was detected in 4.9-8.6% of the samples investigated using Xpert, with a higher yield in 2017 than in 2018. The overall proportion of unsuccessful Xpert assays due to "no results", errors and invalid results was 6.3%, and highly variable across sites. CONCLUSION Roll out of more sensitive TB diagnostics does not necessarily result in an increase of microbiologically confirmed TB diagnosis. While the number of samples tested using Xpert increased, the proportion of TB-positive tests decreased. GeneXpert soft- and hardware infrastructure needs to be strengthened to reduce the rate of unsuccessful assays and therefore, costs and staff time.
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Affiliation(s)
- K Zvinoera
- Ministry of Health and Child Care, Mutare Provincial Hospital, Mutare, Zimbabwe
| | - I D Olaru
- Clinical Research Department, London School of Hygiene & Tropical Medicine, London, UK.,Biomedical Research and Training Institute, Harare, Zimbabwe
| | - P Khan
- Clinical Research Department, London School of Hygiene & Tropical Medicine, London, UK
| | - J Mutsvangwa
- Biomedical Research and Training Institute, Harare, Zimbabwe
| | - C M Denkinger
- Division of Tropical Medicine, Centre for Infectious Diseases, Heidelberg University Hospital, Heidelberg, Germany.,German Centre for Infection Research (DZIF), partner site Heidelberg University Hospital, Heidelberg, Germany
| | - V Kampira
- Ministry of Health and Child Care, Mutare Provincial Hospital, Mutare, Zimbabwe
| | - D Coutinho
- Ministry of Health and Child Care, Mutare Provincial Hospital, Mutare, Zimbabwe
| | - H Mutunzi
- AIDS and TB Department, Ministry of Health and Child Care, Harare, Zimbabwe
| | - M Pepukai
- Biomedical Research and Training Institute, Harare, Zimbabwe
| | - E Chikaka
- Department of Health Sciences, College of Health and Natural Sciences, Africa University, Old Mutare, Zimbabwe
| | - S Zinyowera
- National Microbiology Reference Laboratory, Ministry of Health and Child Care, Harare, Zimbabwe
| | - S Mharakurwa
- Department of Health Sciences, College of Health and Natural Sciences, Africa University, Old Mutare, Zimbabwe
| | - K Kranzer
- Clinical Research Department, London School of Hygiene & Tropical Medicine, London, UK.,Biomedical Research and Training Institute, Harare, Zimbabwe.,Division of Infectious Diseases and Tropical Medicine, Medical Center of the University of Munich, Munich, Germany
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Mutsvangwa J, Beck IA, Gwanzura L, Manhanzva MT, Stranix-Chibanda L, Chipato T, Frenkel LM. Optimization of the oligonucleotide ligation assay for the detection of nevirapine resistance mutations in Zimbabwean Human Immunodeficiency Virus type-1 subtype C. J Virol Methods 2014; 210:36-9. [PMID: 25239368 DOI: 10.1016/j.jviromet.2014.09.005] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2014] [Revised: 09/03/2014] [Accepted: 09/09/2014] [Indexed: 10/24/2022]
Abstract
An oligonucleotide ligation assay (OLA) designed to detect Human Immunodeficiency Virus type-1 (HIV)-drug-resistance to the nevirapine (NVP) selected mutations K103N, Y181C, V106M and G190A was used to evaluate 200 archived dried blood spots (DBS) from infected infants participating in the Zimbabwean Early Infant Diagnosis (EID) Program. Consensus sequencing of specimens with indeterminate OLA results was performed to identify genetic sequence polymorphisms that appeared to compromise performance of the OLA. When consistent patterns of polymorphisms were observed the probes were redesigned, and DBS specimens with indeterminate OLA results were retested with the new Zimbabwe-specific (ZW) probes. OLA results obtained in Zimbabwe were compared to repeat testing in a US reference laboratory. 188/200 (94%) DBS yielded polymerase chain reaction (PCR) amplification of HIV pol. ZW probes reduced indeterminate OLA results from 5.2% to 2.8% of codons evaluated (p=0.02), with 98.2% concordance between results obtained in the Zimbabwean and US laboratories. Optimization of OLA probes to accommodate polymorphisms in regional HIV variants improved OLA performance, and comparison to the USA results showed successful implementation of the OLA in Zimbabwe for detection of NVP resistance mutations in DBS specimens.
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Affiliation(s)
- J Mutsvangwa
- Biomedical Research & Training Institute (BRTI), Zimbabwe; University of Zimbabwe, College of Health Sciences, Zimbabwe.
| | - I A Beck
- Seattle Children's Research Institute, Seattle, WA, USA.
| | - L Gwanzura
- Biomedical Research & Training Institute (BRTI), Zimbabwe; University of Zimbabwe, College of Health Sciences, Zimbabwe.
| | - M T Manhanzva
- University of Zimbabwe, College of Health Sciences, Zimbabwe.
| | | | - T Chipato
- University of Zimbabwe, College of Health Sciences, Zimbabwe.
| | - L M Frenkel
- Seattle Children's Research Institute, Seattle, WA, USA; University of Washington, Seattle, WA, USA.
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Mutsvangwa J, Millington KA, Chaka K, Mavhudzi T, Cheung YB, Mason PR, Butterworth AE, Corbett EL, Lalvani A. Identifying recent Mycobacterium tuberculosis transmission in the setting of high HIV and TB burden. Thorax 2010; 65:315-20. [DOI: 10.1136/thx.2009.124891] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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Corbett EL, Munyati SS, Mungofa S, Gwanzura L, Mutsvangwa J, Mason PR. Reply to Talbot et al. Clin Infect Dis 2005. [DOI: 10.1086/444572] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022] Open
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Apers L, Wijarajah C, Mutsvangwa J, Chigara N, Mason P, van der Stuyft P. Accuracy of routine diagnosis of pulmonary tuberculosis in an area of high HIV prevalence. Int J Tuberc Lung Dis 2004; 8:945-51. [PMID: 15305475] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/30/2023] Open
Abstract
SETTING Gweru Provincial Hospital, Zimbabwe. OBJECTIVES To evaluate the accuracy of the diagnosis of pulmonary tuberculosis (PTB) in routine circumstances. DESIGN Prospective cohort study of routinely diagnosed PTB patients between September 2000 and September 2001. RESULTS Of 300 patients started on treatment, 161 (53.7%) were positive on direct microscopy. Of the 139 sputum-negative patients, 51 (36.7%) were positive after concentration of specimens, an additional 30 (21.6%) were positive on culture only and 58 (19.3% of the total) were negative for all laboratory investigations. There was no difference in sex, human immunodeficiency virus (HIV) serostatus or treatment outcome between the culture-positive and culture-negative presumed PTB patients. Sputum-negative patients had an increased risk of dying during treatment (RR 2.39, P = 0.015). CONCLUSIONS The laboratory findings reveal that PTB could be confirmed in more than 80% of patients put on treatment in this setting. The treatment outcomes of the remainder did not differ from those in patients with microbiologically confirmed PTB. In a high HIV-prevalent area, clinicians rightly consider the results of the sputum microscopy test as only one element in the decision making process to put a patient on TB treatment.
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Affiliation(s)
- L Apers
- Department of Public Health, Institute of Tropical Medicine, Nationalestraat, Antwerp, Belgium.
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Apers L, Mutsvangwa J, Magwenzi J, Chigara N, Butterworth A, Mason P, Van der Stuyft P. A comparison of direct microscopy, the concentration method and the Mycobacteria Growth Indicator Tube for the examination of sputum for acid-fast bacilli. Int J Tuberc Lung Dis 2003; 7:376-81. [PMID: 12729344] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2023] Open
Abstract
SETTING In countries with high human immunodeficiency virus prevalence, laboratory diagnosis of pulmonary tuberculosis with the standard Ziehl-Neelsen (ZN) technique is characterised by low sensitivity. OBJECTIVE To compare test characteristics of direct microscopy, the concentration method and the Mycobacteria Growth Indicator Tube (MGIT). DESIGN Three hundred specimens from patients diagnosed with pulmonary tuberculosis were tested for the presence of mycobacteria. Specimens were stained with ZN, decontaminated by adding 4% NaOH, concentrated by centrifuging and processed in MGIT broth. The gold standard was defined as a positive MGIT culture or a positive acid-fast bacilli smear of material obtained from a negative culture after 42 days. RESULTS A total of 44 (14.7%) specimens were contaminated. Of 256 valid specimens, 234 (91.4%) were positive according to the gold standard definition. Decontamination and concentration of the sample increased the sensitivity of direct microscopy from 67.5% to 87.1%. Specificity remained unchanged (95.5%). The overall median time to detection of MGIT culture-positive specimens was 5 days, ranging from 4 (direct smear-positive specimens) to 12 days (concentration smear-negative specimens). CONCLUSION The concentration method substantially increases the sensitivity of direct microscopy without much extra input. The MGIT culture technique has considerable advantages, but its relatively high contamination rate and its high cost make it a less recommendable option for widespread use in routine district laboratories.
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Affiliation(s)
- L Apers
- Department of Epidemiology, Provincial Medical Directorate, Epidemiology, Gweru, Midlands, Zimbabwe.
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