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Martin KP, MacKenzie SM, Barnes JW, Ytreberg FM. Protein Stability in Titan's Subsurface Water Ocean. Astrobiology 2020; 20:190-198. [PMID: 31730377 PMCID: PMC7041334 DOI: 10.1089/ast.2018.1972] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2018] [Accepted: 10/08/2019] [Indexed: 06/10/2023]
Abstract
Models of Titan predict that there is a subsurface ocean of water and ammonia under a layer of ice. Such an ocean would be important in the search for extraterrestrial life since it provides a potentially habitable environment. To evaluate how Earth-based proteins would behave in Titan's subsurface ocean environment, we used molecular dynamics simulations to calculate the properties of proteins with the most common secondary structure types (alpha helix and beta sheet) in both Earth and Titan-like conditions. The Titan environment was simulated by using a temperature of 300 K, a pressure of 1000 bar, and a eutectic mixture of water and ammonia. We analyzed protein compactness, flexibility, and backbone dihedral distributions to identify differences between the two environments. Secondary structures in the Titan environment were found to be less long-lasting, less flexible, and had small differences in backbone dihedral preferences (e.g., in one instance a pi helix formed). These environment-driven differences could lead to changes in how these proteins interact with other biomolecules and therefore changes in how evolution would potentially shape proteins to function in subsurface ocean environments.
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Affiliation(s)
- Kyle P. Martin
- Department of Physics, University of Idaho, Moscow, Idaho
- Institute for Modeling Collaboration and Innovation, University of Idaho, Moscow, Idaho
| | | | | | - F. Marty Ytreberg
- Department of Physics, University of Idaho, Moscow, Idaho
- Institute for Modeling Collaboration and Innovation, University of Idaho, Moscow, Idaho
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Quarles B, Barnes JW, Lissauer JJ, Chambers J. Obliquity Evolution of the Potentially Habitable Exoplanet Kepler-62f. Astrobiology 2020; 20:73-90. [PMID: 31613645 DOI: 10.1089/ast.2018.1932] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Variations in the axial tilt, or obliquity, of terrestrial planets can affect their climates and therefore their habitability. Kepler-62f is a 1.4 R⊕ planet orbiting within the habitable zone of its K2 dwarf host star. We perform N-body simulations that monitor the evolution of obliquity of Kepler-62f for 10-million-year timescales to explore the effects on model assumptions, such as the masses of the Kepler-62 planets and the possibility of outer bodies. Significant obliquity variation occurs when the rotational precession frequency overlaps with one or more of the secular orbital frequencies, but most variations are limited to ≲10°. Moderate variations (∼10-20°) can occur over a broader range of initial obliquities when the relative nodal longitude (ΔΩ) overlaps with the frequency and phase of a given secular mode. However, we find that adding outer gas giants on long-period orbits (∼1000 days) can produce large (∼60°) variations in obliquity if Kepler-62f has a very rapid (4 h) rotation period. The possibility of giant planets on long-period orbits impacts the climate and habitability of Kepler-62f through variations in the latitudinal surface flux, where large variations can occur on million year timescales.
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Affiliation(s)
- Billy Quarles
- Center for Relativistic Astrophysics, School of Physics, Georgia Institute of Technology, Atlanta, Georgia
| | - Jason W Barnes
- Department of Physics, University of Idaho, Moscow, Idaho
| | - Jack J Lissauer
- NASA Ames Research Center, Astrobiology and Space Science Division MS 245-3, Moffett Field, California
| | - John Chambers
- Department of Terrestrial Magnetism, Carnegie Institution for Science, Washington, District of Columbia
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Neish CD, Lorenz RD, Turtle EP, Barnes JW, Trainer MG, Stiles B, Kirk R, Hibbitts CA, Malaska MJ. Strategies for Detecting Biological Molecules on Titan. Astrobiology 2018; 18:571-585. [PMID: 29718687 DOI: 10.1089/ast.2017.1758] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Saturn's moon Titan has all the ingredients needed to produce "life as we know it." When exposed to liquid water, organic molecules analogous to those found on Titan produce a range of biomolecules such as amino acids. Titan thus provides a natural laboratory for studying the products of prebiotic chemistry. In this work, we examine the ideal locales to search for evidence of, or progression toward, life on Titan. We determine that the best sites to identify biological molecules are deposits of impact melt on the floors of large, fresh impact craters, specifically Sinlap, Selk, and Menrva craters. We find that it is not possible to identify biomolecules on Titan through remote sensing, but rather through in situ measurements capable of identifying a wide range of biological molecules. Given the nonuniformity of impact melt exposures on the floor of a weathered impact crater, the ideal lander would be capable of precision targeting. This would allow it to identify the locations of fresh impact melt deposits, and/or sites where the melt deposits have been exposed through erosion or mass wasting. Determining the extent of prebiotic chemistry within these melt deposits would help us to understand how life could originate on a world very different from Earth. Key Words: Titan-Prebiotic chemistry-Solar system exploration-Impact processes-Volcanism. Astrobiology 18, 571-585.
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Affiliation(s)
- Catherine D Neish
- 1 Department of Earth Sciences, The University of Western Ontario , London, Canada
| | - Ralph D Lorenz
- 2 The Johns Hopkins Applied Physics Laboratory , Laurel, Maryland
| | | | - Jason W Barnes
- 3 Department of Physics, University of Idaho , Moscow, Idaho
| | | | - Bryan Stiles
- 5 Jet Propulsion Laboratory, California Institute of Technology , Pasadena, California
| | - Randolph Kirk
- 6 United States Geological Survey, Astrogeology Science Center , Flagstaff, Arizona
| | | | - Michael J Malaska
- 5 Jet Propulsion Laboratory, California Institute of Technology , Pasadena, California
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Abstract
UNLABELLED Venus currently rotates slowly, with its spin controlled by solid-body and atmospheric thermal tides. However, conditions may have been far different 4 billion years ago, when the Sun was fainter and most of the carbon within Venus could have been in solid form, implying a low-mass atmosphere. We investigate how the obliquity would have varied for a hypothetical rapidly rotating Early Venus. The obliquity variation structure of an ensemble of hypothetical Early Venuses is simpler than that Earth would have if it lacked its large moon (Lissauer et al., 2012 ), having just one primary chaotic regime at high prograde obliquities. We note an unexpected long-term variability of up to ±7° for retrograde Venuses. Low-obliquity Venuses show very low total obliquity variability over billion-year timescales-comparable to that of the real Moon-influenced Earth. KEY WORDS Planets and satellites-Venus. Astrobiology 16, 487-499.
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Affiliation(s)
- Jason W Barnes
- 1 Department of Physics, University of Idaho , Moscow, Idaho. Researcher ID: B-1284-2009
| | - Billy Quarles
- 2 Space Science and Astrobiology Division, NASA Ames Research Center , Moffett Field, California
- 3 Department of Physics and Physical Science, The University of Nebraska at Kearney , Kearney, Nebraska
| | - Jack J Lissauer
- 2 Space Science and Astrobiology Division, NASA Ames Research Center , Moffett Field, California
| | - John Chambers
- 4 Department of Terrestrial Magnetism, Carnegie Institution of Washington , Washington, DC
| | - Matthew M Hedman
- 1 Department of Physics, University of Idaho , Moscow, Idaho. Researcher ID: B-1284-2009
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Barnes JW, Sotin C, Soderblom JM, Brown RH, Hayes AG, Donelan M, Rodriguez S, Mouélic SL, Baines KH, McCord TB. Cassini/VIMS observes rough surfaces on Titan's Punga Mare in specular reflection. ACTA ACUST UNITED AC 2014; 3:3. [PMID: 27512619 PMCID: PMC4959132 DOI: 10.1186/s13535-014-0003-4] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2014] [Accepted: 06/19/2014] [Indexed: 11/28/2022]
Abstract
Cassini/VIMS high-phase specular observations of Titan’s north pole during the T85 flyby show evidence for isolated patches of rough liquid surface within the boundaries of the sea Punga Mare. The roughness shows typical slopes of 6°±1°. These rough areas could be either wet mudflats or a wavy sea. Because of their large areal extent, patchy geographic distribution, and uniform appearance at low phase, we prefer a waves interpretation. Applying theoretical wave calculations based on Titan conditions our slope determination allows us to infer winds of 0.76±0.09 m/s and significant wave heights of \documentclass[12pt]{minimal}
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$2^{+2}_{-1}$
\end{document}2−1+2 cm at the time and locations of the observation. If correct, these would represent the first waves seen on Titan’s seas, and also the first extraterrestrial sea-surface waves in general.
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Affiliation(s)
- Jason W Barnes
- Department of Physics, University of Idaho, Moscow, 83844-0903 Idaho USA
| | - Christophe Sotin
- Jet Propulsion Laboratory, Caltech, Pasadena, 91109 California USA
| | - Jason M Soderblom
- Department of Earth, Atmospheric, and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, 02141 MA USA
| | - Robert H Brown
- Lunar and Planetary Laboratory, University of Arizona, Tucson, 85721 Arizona USA
| | | | | | - Sebastien Rodriguez
- Laboratoire AIM, Université Paris Diderot/CEA Irfu/CNRS, Centre de l'orme des Mérisiers, bât. 709, Gif/Yvette Cedex, 91191 France
| | - Stéphane Le Mouélic
- Laboratoire de Planétologie et Géodynamique, CNRS UMR6112, Université de Nantes, Nantes, France
| | - Kevin H Baines
- Space Science and Engineering Center, University of Wisconsin, Madison, 53706 WI USA
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Barnes JW, Buratti BJ, Turtle EP, Bow J, Dalba PA, Perry J, Brown RH, Rodriguez S, Mouélic SL, Baines KH, Sotin C, Lorenz RD, Malaska MJ, McCord TB, Clark RN, Jaumann R, Hayne PO, Nicholson PD, Soderblom JM, Soderblom LA. Precipitation-induced surface brightenings seen on Titan by Cassini VIMS and ISS. ACTA ACUST UNITED AC 2013. [DOI: 10.1186/2191-2521-2-1] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Cornet T, Bourgeois O, Le Mouélic S, Rodriguez S, Sotin C, Barnes JW, Brown RH, Baines KH, Buratti BJ, Clark RN, Nicholson PD. Edge detection applied to Cassini images reveals no measurable displacement of Ontario Lacus' margin between 2005 and 2010. ACTA ACUST UNITED AC 2012. [DOI: 10.1029/2012je004073] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Clark RN, Curchin JM, Barnes JW, Jaumann R, Soderblom L, Cruikshank DP, Brown RH, Rodriguez S, Lunine J, Stephan K, Hoefen TM, Le Mouélic S, Sotin C, Baines KH, Buratti BJ, Nicholson PD. Detection and mapping of hydrocarbon deposits on Titan. ACTA ACUST UNITED AC 2010. [DOI: 10.1029/2009je003369] [Citation(s) in RCA: 134] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Le Mouélic S, Paillou P, Janssen MA, Barnes JW, Rodriguez S, Sotin C, Brown RH, Baines KH, Buratti BJ, Clark RN, Crapeau M, Encrenaz PJ, Jaumann R, Geudtner D, Paganelli F, Soderblom L, Tobie G, Wall S. Mapping and interpretation of Sinlap crater on Titan using Cassini VIMS and RADAR data. ACTA ACUST UNITED AC 2008. [DOI: 10.1029/2007je002965] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Barnes JW, Radebaugh J, Brown RH, Wall S, Soderblom L, Lunine J, Burr D, Sotin C, Le Mouélic S, Rodriguez S, Buratti BJ, Clark R, Baines KH, Jaumann R, Nicholson PD, Kirk RL, Lopes R, Lorenz RD, Mitchell K, Wood CA. Near-infrared spectral mapping of Titan's mountains and channels. ACTA ACUST UNITED AC 2007. [DOI: 10.1029/2007je002932] [Citation(s) in RCA: 73] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Brown RH, Clark RN, Buratti BJ, Cruikshank DP, Barnes JW, Mastrapa RME, Bauer J, Newman S, Momary T, Baines KH, Bellucci G, Capaccioni F, Cerroni P, Combes M, Coradini A, Drossart P, Formisano V, Jaumann R, Langevin Y, Matson DL, McCord TB, Nelson RM, Nicholson PD, Sicardy B, Sotin C. Composition and Physical Properties of Enceladus' Surface. Science 2006; 311:1425-8. [PMID: 16527972 DOI: 10.1126/science.1121031] [Citation(s) in RCA: 170] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Observations of Saturn's satellite Enceladus using Cassini's Visual and Infrared Mapping Spectrometer instrument were obtained during three flybys of Enceladus in 2005. Enceladus' surface is composed mostly of nearly pure water ice except near its south pole, where there are light organics, CO2, and amorphous and crystalline water ice, particularly in the region dubbed the "tiger stripes." An upper limit of 5 precipitable nanometers is derived for CO in the atmospheric column above Enceladus, and 2% for NH3 in global surface deposits. Upper limits of 140 kelvin (for a filled pixel) are derived for the temperatures in the tiger stripes.
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Affiliation(s)
- Robert H Brown
- Lunar and Planetary Laboratory, University of Arizona, Tucson, AZ 85721, USA
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Barnes JW, Brown RH, Turtle EP, McEwen AS, Lorenz RD, Janssen M, Schaller EL, Brown ME, Buratti BJ, Sotin C, Griffith C, Clark R, Perry J, Fussner S, Barbara J, West R, Elachi C, Bouchez AH, Roe HG, Baines KH, Bellucci G, Bibring JP, Capaccioni F, Cerroni P, Combes M, Coradini A, Cruikshank DP, Drossart P, Formisano V, Jaumann R, Langevin Y, Matson DL, McCord TB, Nicholson PD, Sicardy B. A 5-micron-bright spot on Titan: evidence for surface diversity. Science 2005; 310:92-5. [PMID: 16210535 DOI: 10.1126/science.1117075] [Citation(s) in RCA: 68] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Observations from the Cassini Visual and Infrared Mapping Spectrometer show an anomalously bright spot on Titan located at 80 degrees W and 20 degrees S. This area is bright in reflected light at all observed wavelengths, but is most noticeable at 5 microns. The spot is associated with a surface albedo feature identified in images taken by the Cassini Imaging Science Subsystem. We discuss various hypotheses about the source of the spot, reaching the conclusion that the spot is probably due to variation in surface composition, perhaps associated with recent geophysical phenomena.
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Affiliation(s)
- Jason W Barnes
- Lunar and Planetary Laboratory, University of Arizona, Tucson, AZ 85721, USA.
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Tischkau SA, Barnes JA, Lin FJ, Myers EM, Barnes JW, Meyer-Bernstein EL, Hurst WJ, Burgoon PW, Chen D, Sehgal A, Gillette MU. Oscillation and light induction of timeless mRNA in the mammalian circadian clock. J Neurosci 1999; 19:RC15. [PMID: 10366653 PMCID: PMC6782684] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/12/2023] Open
Abstract
Circadian rhythms in Drosophila melanogaster depend on a molecular feedback loop generated by oscillating products of the period (per) and timeless (tim) genes. In mammals, three per homologs are cyclically expressed in the suprachiasmatic nucleus (SCN), site of the circadian clock, and two of these, mPer1 and mPer2, are induced in response to light. Although this light response distinguishes the mammalian clock from its Drosophila counterpart, overall regulation, including homologous transcriptional activators, appears to be similar. Thus, the basic mechanisms used to generate circadian timing have been conserved. However, contrary to expectations, the recently isolated mammalian tim homolog was reported not to cycle. In this study, we examined mRNA levels of the same tim homolog using a different probe. We observed a significant (approximately threefold) diurnal variation in mTim expression within mouse SCN using two independent methods. Peak levels were evident at the day-to-night transition in light-entrained animals, and the oscillation persisted on the second day in constant conditions. Furthermore, light pulses known to induce phase delays caused significant elevation in mTim mRNA. In contrast, phase-advancing light pulses did not affect mTim levels. The mTim expression profile and the response to nocturnal light are similar to mPer2 and are delayed compared with mPer1. We conclude that temporal ordering of mTim and mPer2 parallels that of their fly homologs. We predict that mTIM may be the preferred functional partner for mPER2 and that expression of mTim and mPer2 may, in fact, be driven by mPER1.
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Affiliation(s)
- S A Tischkau
- Department of Cell and Structural Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
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Waters SL, Butler KR, Clark JC, Horlock PL, Kensett MJ, Goodier IW, Makepeace J, Smith D, Woods MJ, Barnes JW. Radioassay problems associated with the clinical use of a 82Rb radionuclide generator. Int J Nucl Med Biol 1983; 10:69-74. [PMID: 6642896 DOI: 10.1016/0047-0740(83)90003-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
The short-lived positron emitting radionuclide 82Rb (t1/2 1.27 min) is conveniently available from a 82Sr/82Rb generator system. The parent nuclide (t1/2 25.5d) produced from the spallation of molybdenum, has associated with it varying quantities of other long-lived strontium radionuclides, namely 85Sr, 89Sr and 90Sr. It is important therefore in the clinical use of such material that the levels of strontium radionuclides being administered to patients is carefully assayed and controlled. The problems associated with these measurements are discussed with special reference to the radiation dose received by the patient and the problems in resolving overlapping peaks with different FWHMs.
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Yano Y, Chu P, Budinger TF, Grant PM, Ogard AE, Barnes JW, O'Brien HA, Hoop B. Rubidium-82 generators for imaging studies. J Nucl Med 1977; 18:46-50. [PMID: 830828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
Strontium-82, produced by spallation reaction with medium-energy proton beams, was used to evaluate Bio-Rex 70 and Chelex-100 ion-exchange resins for use in a compact Rb-82 generator. Adsorption of Sr-82 to the resin column, Rb-82 elution yields, Sr breakthrough, and 82Rb-Sr separation factors were determined for newly prepared columns and for longterm elution conditions. Separation factors of 10(7) to 10(8) were obtained with 2% NaCl elutions from Bio-Rex 70 resin columns while the separation factors was about 5 X 10(4) with the Chelex-100 resin column.
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