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Pauline R, Devaraj DV, Sivasubramanian J, Velmurugan S, Stephen SB, Yasam SK, Kulanthaivel L, Subbaraj GK. Systemic assessment of solute carrier family 11-member A1 (rs17235409) gene polymorphism and Mycobacterium Tuberculosis Risk in Asian and caucasian population: A comprehensive updated meta-analysis. Int J Mycobacteriol 2023; 12:467-477. [PMID: 38149545 DOI: 10.4103/ijmy.ijmy_180_23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2023] Open
Abstract
Background The present meta-analysis was assessed to confirm the association between solute carrier family 11-member A1 (SLC11A1) gene (rs17235409) polymorphism with the Mycobacterium tuberculosis infection in the Asian and Caucasian populations. Methods A search was conducted using the databases including Google Scholar, Science Direct, Embase, and PubMed to find the case-control studies related to SLC11A1 gene polymorphism and tuberculosis (TB) infection. The MetaGenyo programme was used to perform statistical analyses of the data. The odds ratio and 95% confidence interval were calculated based on genetic models such as allelic model, dominant model, recessive model, and overdominant. The heterogeneity and publication bias for the present study were examined to assess its quality. The study was registered in PROSPERO (ID Number: 461434). Results This current study revealed the association between the SLC11A1 gene polymorphism with TB. The statistical value obtained at P < 0.05 was deemed to be statistically significant. The meta-analysis results revealed that allele contrast and recessive models are significant association between SLC11A1 gene polymorphism with risk of TB infections, and dominant and overdominant models have no significant association with TB risk. In addition, the subgroup analysis based on the ethnicity dominant revealed a significant association with the risk of TB. Therefore, this results that the gene SLC11A1 has a significant association for allelic and recessive and has no significant association for dominant and overdominant with the risk of TB. Conclusion According to the data retrieved from the database with respect to the present study revealed that SLC11A1 gene polymorphism rs17235409 for allelic, recessive models have been associated with TB infections, but dominant and overdominant models have not been associated with TB infections.
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Affiliation(s)
- Rashmi Pauline
- Faculty of Allied Health Sciences, Chettinad Hospital and Research Institute, Chettinad Academy of Research and Education, Kelambakkam, Tamil Nadu, India
| | - Danis Vijay Devaraj
- Department of Microbiology, Karpaga Vinayaga Institute of Medical Sciences and Research Centre, Mathuranthagam, Tamil Nadu, India
| | - Jayanthi Sivasubramanian
- Department of Microbiology, Panimalar Medical College Hospital and Research Institute, Chennai, Tamil Nadu, India
| | - Saranya Velmurugan
- Faculty of Allied Health Sciences, Chettinad Hospital and Research Institute, Chettinad Academy of Research and Education, Kelambakkam, Tamil Nadu, India
| | - Sharon Benita Stephen
- Faculty of Allied Health Sciences, Chettinad Hospital and Research Institute, Chettinad Academy of Research and Education, Kelambakkam, Tamil Nadu, India
| | - Santhosh Kumar Yasam
- Faculty of Allied Health Sciences, Chettinad Hospital and Research Institute, Chettinad Academy of Research and Education, Kelambakkam, Tamil Nadu, India
| | - Langeswaran Kulanthaivel
- Faculty of Allied Health Sciences, Chettinad Hospital and Research Institute, Chettinad Academy of Research and Education, Kelambakkam, Tamil Nadu, India
| | - Gowtham Kumar Subbaraj
- Faculty of Allied Health Sciences, Chettinad Hospital and Research Institute, Chettinad Academy of Research and Education, Kelambakkam, Tamil Nadu, India
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Sivasubramanian J, Shaik Hussain SM, Virudhunagar Muthuprakash S, Periadurai ND, Mohanram K, Surapaneni KM. Analysing the clinical knowledge of ChatGPT in medical microbiology in the undergraduate medical examination. Indian J Med Microbiol 2023; 45:100380. [PMID: 37573052 DOI: 10.1016/j.ijmmb.2023.100380] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2023] [Revised: 04/03/2023] [Accepted: 04/26/2023] [Indexed: 08/14/2023]
Affiliation(s)
- Jayanthi Sivasubramanian
- Department of Microbiology, Panimalar Medical College Hospital & Research Institute, Varadharajapuram, Poonamallee, Chennai, 600123, India.
| | - Shifa Meharaj Shaik Hussain
- Department of Microbiology, Panimalar Medical College Hospital & Research Institute, Varadharajapuram, Poonamallee, Chennai, 600123, India.
| | | | - Nanthini Devi Periadurai
- Department of Microbiology, Panimalar Medical College Hospital & Research Institute, Varadharajapuram, Poonamallee, Chennai, 600123, India; Department of Molecular Virology, Panimalar Medical College Hospital & Research Institute, Varadharajapuram, Poonamallee, Chennai, 600123, India.
| | - Kalyani Mohanram
- Department of Microbiology, Panimalar Medical College Hospital & Research Institute, Varadharajapuram, Poonamallee, Chennai, 600123, India.
| | - Krishna Mohan Surapaneni
- Department of Biochemistry, Panimalar Medical College Hospital & Research Institute, Varadharajapuram, Poonamallee, Chennai, 600123, Tamil Nadu, India; Departments of Medical Education, Molecular Virology, Research, Clinical Skills & Simulation, Panimalar Medical College Hospital & Research Institute, Varadharajapuram, Poonamallee, Chennai, 600123, Tamil Nadu, India.
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Sivakumar S, Anusuya D, Khatiwada CP, Sivasubramanian J, Venkatesan A, Soundhirarajan P. Characterizations of diverse mole of pure and Ni-doped α-Fe2O3 synthesized nanoparticles through chemical precipitation route. Spectrochim Acta A Mol Biomol Spectrosc 2014; 128:69-75. [PMID: 24681311 DOI: 10.1016/j.saa.2014.02.136] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2013] [Revised: 02/11/2014] [Accepted: 02/21/2014] [Indexed: 06/03/2023]
Abstract
In the present study, an attempt has been made for characterization and synthesis of pure and Ni-doped α-Fe2O3 (hematite) nanoparticles by chemical precipitation method. The synthesized products have been studied by X-ray diffraction (X-RD), Fourier transform infrared (FTIR) spectroscopy, UV-Vis diffuse reflectance spectroscopy (UV-Vis DRS), vibrating sample magnetometer (VSM) and scanning electron microscopy (SEM) techniques. The estimated average diameter of α-Fe2O3 nanoparticles were calculated by using the Debye-Scherrer equation and established as 31 nm. SEM micrographs showed the surface morphology as well as structures and particles distributions of synthesized samples. The UV-Vis DRS showed the indirect and direct band gap energies of pure and Ni-doped α-Fe2O3, these were reduced from 1.9847 to 1.52 eV and 2.0503 to 1.76 eV respectively. This result suggested the dopant enhanced the semiconducting behavior of iron oxide nanoparticles to an extent proportional to its nickel doped in the α-Fe2O3. Further, the magnetic properties of the pure and doped samples were investigated by vibrating sample magnetometer (VSM) and evaluated the information of pure and doped samples exhibited saturated hysteresis loop at room temperature, which is indicating that the weak ferromagnetism in nature of our synthesized samples. In addition, it has been found from the magnetization hysteresis curves of Ni-doping, resulting from increased the saturation of magnetization and reduced the coercivity of used samples. Therefore, the present study showed the reduction in band gap energies and coercive field for α-Fe2O3 nanoparticles due to nickel doped.
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Affiliation(s)
- S Sivakumar
- Department of Physics, Annamalai University, Annamalai Nagar, Tamilnadu 608 002, India.
| | - D Anusuya
- Department of Physics, Annamalai University, Annamalai Nagar, Tamilnadu 608 002, India
| | | | - J Sivasubramanian
- Department of Physics, Annamalai University, Annamalai Nagar, Tamilnadu 608 002, India
| | - A Venkatesan
- Department of Physics, Annamalai University, Annamalai Nagar, Tamilnadu 608 002, India
| | - P Soundhirarajan
- Department of Physics, Annamalai University, Annamalai Nagar, Tamilnadu 608 002, India
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Sivakumar S, Khatiwada CP, Sivasubramanian J. Protective effects of desferrioxamine and deferiprone on the spleen tissue of aluminum intoxicated mice: A Fourier transform infrared spectroscopy study. Spectrochim Acta A Mol Biomol Spectrosc 2014; 126:148-156. [PMID: 24594887 DOI: 10.1016/j.saa.2014.02.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2013] [Revised: 01/26/2014] [Accepted: 02/02/2014] [Indexed: 06/03/2023]
Abstract
The present study was designed to examine the protective effects of the chelating agents desferrioxamine (DFO) and deferiprone (DFP) in aluminum intoxicated spleen tissue of mice by Fourier transform infrared (FTIR) spectroscopy. The finding revealed the alterations on the major biochemical constituents, such as lipids, proteins, phosphodiester and nucleic acids of the spleen tissue of mice at molecular level. The significant decreased in the peak areas of asymmetric and symmetric mode of the phosphodiester groups from control to aluminum intoxicated, but improved it by DFP and DFO+DFP treatments respectively for nearer control value. The bands ratio at I1081/I1232 significantly decreased from control to aluminum, but enhanced it by DFP and DFO+DFP respectively. This result suggests that DFO and DFP are the phosphodiesterase inhibitor, recovered from chronic growth of diseases in the spleen. Amide I and amide II peak area values decreased from control to aluminum intoxicated spleen tissue, but treated with DFP and DFO+DFP significantly improved. This result suggests an alteration in the protein profile. The absence of Olefinic=CH stretching in aluminum intoxicated spleen suggests an altered lipid levels. Concentrations of trace elements were found by ICP-OES. Histopathological findings confirmed the biochemical observations of this study. The results of the FTIR study were found to be in agreement with biochemical studies and demonstrated that FTIR can be used successfully applied to toxicological studies at molecular level.
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Affiliation(s)
- S Sivakumar
- Department of Physics, Annamalai University, Annamalai Nagar, Tamilnadu 608002, India.
| | | | - J Sivasubramanian
- Department of Physics, Annamalai University, Annamalai Nagar, Tamilnadu 608002, India
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Sivakumar S, Khatiwada CP, Sivasubramanian J. Studies the alterations of biochemical and mineral contents in bone tissue of mus musculus due to aluminum toxicity and the protective action of desferrioxamine and deferiprone by FTIR, ICP-OES, SEM and XRD techniques. Spectrochim Acta A Mol Biomol Spectrosc 2014; 126:59-67. [PMID: 24583473 DOI: 10.1016/j.saa.2014.01.136] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2013] [Revised: 01/22/2014] [Accepted: 01/27/2014] [Indexed: 06/03/2023]
Abstract
The present study has attempt to analyze the changes in the biochemical and mineral contents of aluminum intoxicated bone and determine the protective action of desferrioxamine (DFO) and deferiprone (DFP) by using Fourier transform infrared (FTIR) spectroscopy, X-ray diffraction (XRD), inductively coupled plasma optical emission spectroscopy (ICP-OES), and scanning electron microscopy (SEM) techniques for four groups of animals such as control (Group I), aluminum intoxicated (Group II), Al+DFP (Group III) and Al+DFO+DFP (Group IV) treated groups respectively. The FTIR spectra of the aluminum intoxicated bone showed significant alteration in the biochemical constituents. The bands ratio at I1400/I877 significantly decreased from control to aluminum, but enhanced it by Al+DFP to Al+DFO+DFP treated bone tissue for treatments of 16 weeks. This result suggests that DFO and DFP are the carbonate inhibitor, recovered from chronic growth of bone diseases and pathologies. The alteration of proteins profile indicated by Amide I and Amide II, where peak area values decreased from control to aluminum respectively, but enhanced by treated with DFP (p.o.) and DFO+DFP (i.p.) respectively. The XRD analysis showed a decrease in crystallinity due to aluminum toxicity. Further, the Ca, Mg, and P contents of the aluminum exposed bone were less than those of the control group, and enhanced by treatments with DFO and DFP. The concentrations of trace elements were found by ICP-OES. Therefore, present study suggests that due to aluminum toxicity severe loss of bone minerals, decrease in the biochemical constituents and changes in the surface morphology.
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Affiliation(s)
- S Sivakumar
- Department of Physics, Annamalai University, Annamalai Nagar, Tamil Nadu 608002, India.
| | | | - J Sivasubramanian
- Department of Physics, Annamalai University, Annamalai Nagar, Tamil Nadu 608002, India
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Sivakumar S, Khatiwada CP, Sivasubramanian J, Raja B. FTIR study of protective action of deferoxamine and deferiprone on the kidney tissues of aluminum loaded mice. Spectrochim Acta A Mol Biomol Spectrosc 2014; 118:488-497. [PMID: 24080580 DOI: 10.1016/j.saa.2013.09.011] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2013] [Revised: 08/26/2013] [Accepted: 09/02/2013] [Indexed: 06/02/2023]
Abstract
The present study was designed to evaluate the FTIR spectra of the aluminum exposed kidney tissues and recovered by chelating agents DFO and DFP then showed significant alteration on the major biochemical constituents such as lipids, proteins and glycogen at molecular level. The significant increased in the peak area of glycogen from 0.006±0.001 to 0.187±0.032 may be the interruption of aluminum in the calcium metabolism and the reduced level of calcium. The peak area value of amide A significantly decreased from control (4.931±1.446) to aluminum (1.234±0.052), but improved by DFP and DFO+DFP from 2.658±0.153 to 3.252±0.070 respectively. Amide I and amide II peak area values also decreased from 1.690±0.133 to 0.811±0.192 and 1.158±0.050 to 0.489±0.047 but treated with DFP and DFO+DFP significantly improved. This result suggests an alteration in the protein profile. The absence of Olefinic=CH stretching band, C=O stretching of triglycerides and ring breathing mode in the DNA bases in aluminum exposure kidney suggests an altered lipid levels. Treated with DFP and DFO+DFP mice were considerably increased in lipid peroxidative markers. Further, assessed the activities of enzymatic antioxidants and measured the levels of nonenzymatic antioxidants. Concentrations of trace elements were found by ICP-OES. Histopathology of chelating agents treated kidney showed reduced renal damage in aluminum induced mice. Thus, histopathological findings confirmed the biochemical observations of this study. This results demonstrated that FTIR spectroscopy can be successfully applied to toxicological and biotoxicology studies.
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Affiliation(s)
- S Sivakumar
- Department of Physics, Annamalai University, Annamalai Nagar, Tamilnadu 608002, India.
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Sivakumar S, Khatiwada CP, Sivasubramanian J, Raja B. FT-Raman study of deferoxamine and deferiprone exhibits potent amelioration of structural changes in the liver tissues of mice due to aluminum exposure. Spectrochim Acta A Mol Biomol Spectrosc 2014; 118:461-469. [PMID: 24080577 DOI: 10.1016/j.saa.2013.09.024] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2013] [Revised: 09/03/2013] [Accepted: 09/04/2013] [Indexed: 06/02/2023]
Abstract
The present study inform the alterations on major biochemical constituents such as lipids, proteins, nucleic acids and glycogen along with phosphodiester linkages, tryptophan bands, tyrosine doublet, disulfide bridge conformations, aliphatic hydrophobic residue, and salt bridges in liver tissues of mice using Fourier transform Raman spectroscopy. In amide I, amide II and amide III, the area value significant decrease due structural alteration in the protein, glycogen and triglycerides levels but chelating agents DFP and DFO upturned it. Morphology changes by aluminium induced alterations and recovery by chelating agents within liver tissues known by histopathological examination. Concentrations of trace elements were found by ICP-OES. FT-Raman study was revealed to be in agreement with biochemical studies and demonstrate that it can successfully specify the molecular alteration in liver tissues. The tyrosyl doublet ratio I899/I831 decreases more in aluminum intoxicated tissues but treatment with DFP and DFO+DFP brings back to nearer control value. This indicates more variation in the hydrogen bonding of the phenolic hydroxyl group due to aluminum poisoning. The decreased Raman intensity ratio (I3220/I3400) observed in the aluminum induced tissues suggests a decreased water domain size, which could be interpreted in terms of weaker hydrogen-bonded molecular species of water in the aluminum intoxicated liver tissues. Finally, FT-Raman spectroscopy might be a useful tool for obtained successfully to indicate the molecular level changes.
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Affiliation(s)
- S Sivakumar
- Department of Physics, Annamalai University, Annamalai Nagar, Tamilnadu 608002, India.
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Sivakumar S, Sivasubramanian J, Khatiwada CP, Manivannan J, Raja B. Determination of aluminium induced metabolic changes in mice liver: a Fourier transform infrared spectroscopy study. Spectrochim Acta A Mol Biomol Spectrosc 2013; 110:241-248. [PMID: 23571087 DOI: 10.1016/j.saa.2013.03.056] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2012] [Revised: 02/14/2013] [Accepted: 03/04/2013] [Indexed: 06/02/2023]
Abstract
In this study, we made a new approach to evaluate aluminium induced metabolic changes in liver tissue of mice using Fourier transform infrared spectroscopy analysis taking one step further in correlation with strong biochemical evidence. This finding reveals the alterations on the major biochemical constituents, such as lipids, proteins, nucleic acids and glycogen of the liver tissues of mice. The peak area value of amide A significantly decrease from 288.278±3.121 to 189.872±2.012 between control and aluminium treated liver tissue respectively. Amide I and amide II peak area value also decrease from 40.749±2.052 to 21.170±1.311 and 13.167±1.441 to 8.953±0.548 in aluminium treated liver tissue respectively. This result suggests an alteration in the protein profile. The absence of olefinicCH stretching band and CO stretching of triglycerides in aluminium treated liver suggests an altered lipid levels due to aluminium exposure. Significant shift in the peak position of glycogen may be the interruption of aluminium in the calcium metabolism and the reduced level of calcium. The overall findings exhibit that the liver metabolic program is altered through increasing the structural modification in proteins, triglycerides and quantitative alteration in proteins, lipids, and glycogen. All the above mentioned modifications were protected in desferrioxamine treated mice. Histopathological results also revealed impairment of aluminium induced alterations in liver tissue. The results of the FTIR study were found to be in agreement with biochemical studies and which demonstrate FTIR can be used successfully to indicate the molecular level changes.
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Affiliation(s)
- S Sivakumar
- Department of Physics, Annamalai University, Annamalai Nagar 608 002, Tamil Nadu, India.
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Sivakumar S, Sivasubramanian J, Prasad khatiwada C, Manivannan J, Raja B. Aluminium induced metabolic changes in kidney and heart tissue of mice: a Fourier transform infrared spectroscopy study. RSC Adv 2013. [DOI: 10.1039/c3ra42714e] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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Sivakumar S, Sivasubramanian J, Raja B. Aluminium induced structural, metabolic alterations and protective effects of desferrioxamine in the brain tissue of mice: an FTIR study. Spectrochim Acta A Mol Biomol Spectrosc 2012; 99:252-258. [PMID: 23085282 DOI: 10.1016/j.saa.2012.09.036] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2012] [Revised: 09/03/2012] [Accepted: 09/16/2012] [Indexed: 06/01/2023]
Abstract
In this study, we intended to made a new approach to evaluate aluminium induced metabolic changes in mice brain tissue using Fourier transform infrared spectroscopy. Results demonstrate that FTIR can successfully indicate the molecular changes that occur in all groups. The overall findings demonstrate the alterations on the major biochemical constituents, such as lipids, proteins and nucleic acids of the brain tissues of mice. The significant decrease in the area value of amide A peak and Olefinic = CH stretching band suggests an alteration in the protein profile and lipid levels due to aluminium exposure, respectively. The significant shift in the amide I and amide II protein peaks may indicate the progression of aluminium induced Alzheimer's disease. Further the administration of DFO significantly improved the level of protein and brought back the amide I and II peaks nearer to the control value. Histopathological results also revealed impairment of Aluminium induced alterations in brain tissue. The results of the FTIR study were found to be in agreement with biochemical studies.
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Affiliation(s)
- S Sivakumar
- Department of Physics, Annamalai University, Annamalai Nagar, Tamilnadu 608 002, India.
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Sivakumar S, Khatiwada CP, Sivasubramanian J. Bioaccumulations of aluminum and the effects of chelating agents on different organs of Cirrhinus mrigala. Environ Toxicol Pharmacol 2012; 34:791-800. [PMID: 23063109 DOI: 10.1016/j.etap.2012.09.007] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2012] [Revised: 08/22/2012] [Accepted: 09/08/2012] [Indexed: 06/01/2023]
Abstract
The study of biological indicator organisms may be more informative than analyzing water or sediments for monitoring heavy metal pollution in the aquatic environment. Non-essential elements enter into the animals and accumulate at the different organs so that chelating agents are most versatile and effective antidotes to eliminate the metals toxicities. The aim of our present study is to find out bioaccumulations of aluminum and the effects of chelating agents DFO and DFP in Muscle, gill, kidney, brain and liver tissues of Cirrhinus mrigala by using inductively coupled atomic emission spectrometry (ICP-AES). This study determined that the accumulation pattern of aluminum is muscle > gill > kidney > brain > liver. The present result suggests that DFO and DFP reduce the aluminum concentration in the tissues of C. mrigala fish and both are efficient chelators. Aluminum toxicity is a widespread problem in all forms of life, including humans, animals, fish, plants, and causes wide spread degradation of the environment and health.
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Affiliation(s)
- S Sivakumar
- Department of Physics, Annamalai University, Chidambaram, Annamalai Nagar 608002, Tamilnadu, India.
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