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Tsai M, Rayner RE, Chafin L, Farkas D, Adair J, Mishan C, Mallampalli RK, Kim SH, Cormet-Boyaka E, Londino JD. Influenza virus reduces ubiquitin E3 ligase MARCH10 expression to decrease ciliary beat frequency. Am J Physiol Lung Cell Mol Physiol 2023; 324:L666-L676. [PMID: 36852930 PMCID: PMC10151042 DOI: 10.1152/ajplung.00191.2022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Revised: 02/10/2023] [Accepted: 02/14/2023] [Indexed: 03/01/2023] Open
Abstract
Respiratory viruses, such as influenza, decrease airway cilia function and expression, which leads to reduced mucociliary clearance and inhibited overall immune defense. Ubiquitination is a posttranslational modification using E3 ligases, which plays a role in the assembly and disassembly of cilia. We examined the role of membrane-associated RING-CH (MARCH) family of E3 ligases during influenza infection and determined that MARCH10, specifically expressed in ciliated epithelial cells, is significantly decreased during influenza infection in mice, human lung epithelial cells, and human lung tissue. Cellular depletion of MARCH10 in differentiated human bronchial epithelial cells (HBECs) using CRISPR/Cas9 showed a decrease in ciliary beat frequency. Furthermore, MARCH10 cellular knockdown in combination with influenza infection selectively decreased immunoreactive levels of the ciliary component, dynein axonemal intermediate chain 1. Cellular overexpression of MARCH10 significantly decreased influenza hemagglutinin protein levels in the differentiated HBECs and knockdown of MARCH10 increased IL-1β cytokine expression, whereas overexpression had the reciprocal effect. These findings suggest that MARCH10 may have a protective role in airway pulmonary host defense and innate immunity during influenza infection.
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Affiliation(s)
- MuChun Tsai
- Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, The Ohio State University, Columbus, Ohio, United States
| | - Rachael E Rayner
- Department of Veterinary Biosciences, The Ohio State University, Columbus, Ohio, United States
| | - Lexie Chafin
- Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, The Ohio State University, Columbus, Ohio, United States
| | - Daniela Farkas
- Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, The Ohio State University, Columbus, Ohio, United States
| | - Jessica Adair
- Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, The Ohio State University, Columbus, Ohio, United States
| | - Chelsea Mishan
- Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, The Ohio State University, Columbus, Ohio, United States
| | - Rama K Mallampalli
- Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, The Ohio State University, Columbus, Ohio, United States
| | - Sun Hee Kim
- Department of Veterinary Biosciences, The Ohio State University, Columbus, Ohio, United States
| | - Estelle Cormet-Boyaka
- Department of Veterinary Biosciences, The Ohio State University, Columbus, Ohio, United States
| | - James D Londino
- Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, The Ohio State University, Columbus, Ohio, United States
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Johnson BS, Chafin L, Farkas D, Adair J, Elhance A, Farkas L, Bednash JS, Londino JD. MicroID2: A Novel Biotin Ligase Enables Rapid Proximity Dependent Proteomics. Mol Cell Proteomics 2022; 21:100256. [PMID: 35688383 PMCID: PMC9293651 DOI: 10.1016/j.mcpro.2022.100256] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Revised: 06/03/2022] [Accepted: 06/05/2022] [Indexed: 11/03/2022] Open
Abstract
Identifying protein-protein and other proximal interactions is central to dissecting signaling and regulatory processes in cells. BioID is a proximity dependent biotinylation method that uses an "abortive" biotin ligase to detect proximal interactions in cells in a highly reproducible manner. Recent advancements in proximity dependent biotinylation tools have improved efficiency and timing of labeling, allowing for measurement of interactions on a cellular timescale. However, issues of size, stability, and background labeling of these constructs persist. Here we modified the structure of BioID2, derived from A. aeolicus BirA, to create a smaller, highly active, biotin ligase that we named MicroID2. Truncation of the c-terminus of BioID2 and addition of mutations to alleviate blockage of biotin/ATP binding at the active site of BioID2 resulted in a smaller, highly active construct with lower background labeling. Several additional point mutations improved the function of our modified MicroID2 construct compared to BioID2 and other biotin ligases, including TurboID and miniTurbo. MicroID2 is the smallest biotin ligase reported so far (180 amino acids, for MicroID2 vs. 257 AA for miniTurbo and 338 AA for TurboID), yet it demonstrates only slightly less labeling activity than TurboID and outperforms miniTurbo. MicroID2 also had lower background labeling than TurboID. For experiments where precise temporal control of labeling is essential, we additionally developed a MicroID2 mutant, termed lbMicroID2, that has lower labeling efficiency, but significantly reduced biotin scavenging compared to BioID2. Finally, we demonstrate utility of MicroID2 in mass spectrometry experiments by localizing MicroID2 constructs to subcellular organelles and measuring proximal interactions.
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Affiliation(s)
- Benjamin S Johnson
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, The Ohio State University Wexner Medical Center, Columbus, Ohio
| | - Lexie Chafin
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, The Ohio State University Wexner Medical Center, Columbus, Ohio
| | - Daniela Farkas
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, The Ohio State University Wexner Medical Center, Columbus, Ohio
| | - Jessica Adair
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, The Ohio State University Wexner Medical Center, Columbus, Ohio
| | - Ajit Elhance
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, The Ohio State University Wexner Medical Center, Columbus, Ohio
| | - Laszlo Farkas
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, The Ohio State University Wexner Medical Center, Columbus, Ohio
| | - Joseph S Bednash
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, The Ohio State University Wexner Medical Center, Columbus, Ohio
| | - James D Londino
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, The Ohio State University Wexner Medical Center, Columbus, Ohio.
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5
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Mallampalli RK, Adair J, Elhance A, Farkas D, Chafin L, Long ME, De M, Mora AL, Rojas M, Peters V, Bednash JS, Tsai M, Londino JD. Interferon Lambda Signaling in Macrophages Is Necessary for the Antiviral Response to Influenza. Front Immunol 2021; 12:735576. [PMID: 34899695 PMCID: PMC8655102 DOI: 10.3389/fimmu.2021.735576] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Accepted: 11/04/2021] [Indexed: 01/14/2023] Open
Abstract
Interferon lambda (IFNλ) signaling is a promising therapeutic target against viral infection in murine models, yet little is known about its molecular regulation and its cognate receptor, interferon lambda receptor 1 (IFNLR1) in human lung. We hypothesized that the IFNλ signaling axis was active in human lung macrophages. In human alveolar macrophages (HAMs), we observed increased IFNLR1 expression and robust increase in interferon-stimulated gene (ISG) expression in response to IFNλ ligand. While human monocytes express minimal IFNLR1, differentiation of monocytes into macrophages with macrophage colony-stimulating factor (M-CSF) or granulocyte-macrophage colony-stimulating factor (GM-CSF) increased IFNLR1 mRNA, IFNLR1 protein expression, and cellular response to IFNλ ligation. Conversely, in mice, M-CSF or GM-CSF stimulated macrophages failed to produce ISGs in response to related ligands, IFNL2 or IFNL3, suggesting that IFNLR1 signaling in macrophages is species-specific. We next hypothesized that IFNλ signaling was critical in influenza antiviral responses. In primary human airway epithelial cells and precision-cut human lung slices, influenza infection substantially increased IFNλ levels. Pretreatment of both HAMs and differentiated human monocytes with IFNL1 significantly inhibited influenza infection. IFNLR1 knockout in the myeloid cell line, THP-1, exhibited reduced interferon responses to either direct or indirect exposure to influenza infection suggesting the indispensability of IFNLR1 for antiviral responses. These data demonstrate the presence of IFNλ - IFNLR1 signaling axis in human lung macrophages and a critical role of IFNλ signaling in combating influenza infection.
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Affiliation(s)
- Rama K. Mallampalli
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, Columbus, Ohio, United States
| | - Jessica Adair
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, Columbus, Ohio, United States
| | - Ajit Elhance
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, Columbus, Ohio, United States
| | - Daniela Farkas
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, Columbus, Ohio, United States
| | - Lexie Chafin
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, Columbus, Ohio, United States
| | - Matthew E. Long
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, Columbus, Ohio, United States,Department of Microbial Infection and Immunity, The Ohio State University Wexner Medical Center, Columbus, Ohio, United States
| | - Mithu De
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, Columbus, Ohio, United States
| | - Ana L. Mora
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, Columbus, Ohio, United States
| | - Mauricio Rojas
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, Columbus, Ohio, United States
| | - Victor Peters
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, Columbus, Ohio, United States
| | - Joseph S. Bednash
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, Columbus, Ohio, United States
| | - MuChun Tsai
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, Columbus, Ohio, United States
| | - James D. Londino
- Department of Internal Medicine, Division of Pulmonary, Critical Care, and Sleep Medicine, Davis Heart and Lung Research Institute, Columbus, Ohio, United States,*Correspondence: James D. Londino,
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6
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Siders JL, Bieser KL, Hamill DR, Acosta EC, Alexander OK, Ali HI, Anderson MJ, Arrasmith HR, Azam M, Beeman NJ, Beydoun H, Bishop LJ, Blair MD, Bletch B, Bline HR, Brown JC, Burns KM, Calagua KC, Chafin L, Christy WA, Ciamacco C, Cizauskas H, Colwell CM, Courtright AR, Diaz Alavez L, Ecret RI, Edriss F, Ellerbrock TG, Ellis MM, Extine EM, Feldman E, Fickenworth LJ, Goeller CM, Grogg AS, Hernandez Y, Hershner A, Jauss MM, Jimenez Garcia L, Franks KE, Kazubski ET, Landis ER, Langub J, Lassek TN, Le TC, Lee JM, Levine DP, Lightfoot PJ, Love N, Maalhagh-Fard A, Maguire C, McGinnis BE, Mehta BV, Melendrez V, Mena ZE, Mendell S, Montiel-Garcia P, Murry AS, Newland RA, Nobles RM, Patel N, Patil Y, Pfister CL, Ramage V, Ray MR, Rodrigues J, Rodriquez VC, Romero Y, Scott AM, Shaba N, Sieg S, Silva K, Singh S, Spargo AJ, Spitnale SJ, Sweeden N, Tague L, Tavernini BM, Tran K, Tungol L, Vestal KA, Wetherbee A, Wright KM, Yeager AT, Zahid R, Kagey JD. Genetic Mapping of a new Hippo allele, HpoN.1.2, in Drosophila melanogaster. MicroPubl Biol 2021; 2021. [PMID: 33851093 PMCID: PMC8033417 DOI: 10.17912/micropub.biology.000383] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Genetic screens provide a mechanism to identify genes involved with different cellular and organismal processes. Using a Flp/FRT screen in the Drosophila eye we identified mutations that result in alterations and de-regulation of cell growth and division. From this screen a group of undergraduate researchers part of the Fly-CURE consortium mapped and characterized a new allele of the gene Hippo, HpoN.1.2.
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Affiliation(s)
- Jamie L Siders
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Kayla L Bieser
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | | | - Erika C Acosta
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Olivia K Alexander
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Humza I Ali
- Biology Department, University of Detroit Mercy, Detroit, MI USA
| | - Micah J Anderson
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Hayden R Arrasmith
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Mustafa Azam
- Biology Department, University of Detroit Mercy, Detroit, MI USA
| | - Nikki J Beeman
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Hassan Beydoun
- Biology Department, University of Detroit Mercy, Detroit, MI USA
| | - Lauren J Bishop
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Morgan D Blair
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Brianna Bletch
- Biology Department, University of Detroit Mercy, Detroit, MI USA
| | - Heather R Bline
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Jennifer C Brown
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Kelly M Burns
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Karina C Calagua
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Lexie Chafin
- Department of Zoology, Ohio Wesleyan University, Delaware, OH USA
| | | | - Carlyn Ciamacco
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Hannah Cizauskas
- Biology Department, University of Detroit Mercy, Detroit, MI USA
| | | | | | - Lucero Diaz Alavez
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Rayne Is Ecret
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Fatima Edriss
- Biology Department, University of Detroit Mercy, Detroit, MI USA
| | - Taylor G Ellerbrock
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Madison M Ellis
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Erica M Extine
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Eric Feldman
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Luke J Fickenworth
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Caroline M Goeller
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Alexis S Grogg
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Yailine Hernandez
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Abigail Hershner
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Megan M Jauss
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Leyre Jimenez Garcia
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Katey E Franks
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Ethan T Kazubski
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Emily R Landis
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Jon Langub
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Tia N Lassek
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Triet C Le
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Julia M Lee
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Daniel P Levine
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | | | - Natasha Love
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | | | - Colin Maguire
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Brynna E McGinnis
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Bhargavi V Mehta
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Veronica Melendrez
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Zimri E Mena
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Seth Mendell
- Biology Department, University of Detroit Mercy, Detroit, MI USA
| | - Petra Montiel-Garcia
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Autumn S Murry
- Biology Department, University of Detroit Mercy, Detroit, MI USA.,ReBUILDetroit, University of Detroit Mercy, Detroit, MI USA
| | - Riley A Newland
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Ryan M Nobles
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Neha Patel
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Yashodhara Patil
- Biology Department, University of Detroit Mercy, Detroit, MI USA
| | - Cassidy L Pfister
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Victoria Ramage
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Mya R Ray
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Joseph Rodrigues
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Victoria C Rodriquez
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Yara Romero
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Alexandra M Scott
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Nicholas Shaba
- Biology Department, University of Detroit Mercy, Detroit, MI USA
| | - Samantha Sieg
- Biology Department, University of Detroit Mercy, Detroit, MI USA
| | - Kayla Silva
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Sahiba Singh
- Biology Department, University of Detroit Mercy, Detroit, MI USA
| | - Aleksandria J Spargo
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Savanna J Spitnale
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Nicole Sweeden
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Logan Tague
- Biology Department, University of Detroit Mercy, Detroit, MI USA
| | - Breanna M Tavernini
- Department of Physical and Life Sciences, Nevada State College, Henderson, NV USA
| | - Kathleen Tran
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Liselle Tungol
- Biology Department, University of Detroit Mercy, Detroit, MI USA
| | - Kylie A Vestal
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Amber Wetherbee
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Kayla M Wright
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Anthony T Yeager
- School of Science, Technology, and Mathematics, Ohio Northern University, Ada, OH USA
| | - Rehab Zahid
- Biology Department, University of Detroit Mercy, Detroit, MI USA
| | - Jacob D Kagey
- Biology Department, University of Detroit Mercy, Detroit, MI USA
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