Reference Citation Analysis: Find an Article, Find a Category, Find a Journal, Find a Scholar

Download

Total Articles

38
(from Reference Citation Analysis)

Article PDFs (1)

Cited by > 0 (27)

Searched Name

M L Spangler

Ranked By

Results Analysis

Year Published Analysis
Article Type Analysis
Publication Title Analysis
Category Analysis

Results Analysis

Indexed Articles

Year Published

Show more Refine

Article Type

Show more Refine

Article Statistics

Refine

MESH Headings

Show more Refine

First Author

Show more Refine

First Author Affiliations

Show more Refine

Authors

Show more Refine

Publication Titles

Show more Refine

Grant Agencies

Show more Refine

Countries/Regions

Show more Refine

Affiliations

Show more Refine

Corresponding Author Affiliations

Show more Refine

Category

Show more Refine

Number

Citation Analysis

Berry DP, Spangler ML. Animal board invited review: Practical applications of genomic information in livestock. Animal 2023;17:100996. [PMID: 37820404 DOI: 10.1016/j.animal.2023.100996] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 09/08/2023] [Accepted: 09/11/2023] [Indexed: 10/13/2023] Open

Lu AT, Fei Z, Haghani A, Robeck TR, Zoller JA, Li CZ, Lowe R, Yan Q, Zhang J, Vu H, Ablaeva J, Acosta-Rodriguez VA, Adams DM, Almunia J, Aloysius A, Ardehali R, Arneson A, Baker CS, Banks G, Belov K, Bennett NC, Black P, Blumstein DT, Bors EK, Breeze CE, Brooke RT, Brown JL, Carter GG, Caulton A, Cavin JM, Chakrabarti L, Chatzistamou I, Chen H, Cheng K, Chiavellini P, Choi OW, Clarke SM, Cooper LN, Cossette ML, Day J, DeYoung J, DiRocco S, Dold C, Ehmke EE, Emmons CK, Emmrich S, Erbay E, Erlacher-Reid C, Faulkes CG, Ferguson SH, Finno CJ, Flower JE, Gaillard JM, Garde E, Gerber L, Gladyshev VN, Gorbunova V, Goya RG, Grant MJ, Green CB, Hales EN, Hanson MB, Hart DW, Haulena M, Herrick K, Hogan AN, Hogg CJ, Hore TA, Huang T, Izpisua Belmonte JC, Jasinska AJ, Jones G, Jourdain E, Kashpur O, Katcher H, Katsumata E, Kaza V, Kiaris H, Kobor MS, Kordowitzki P, Koski WR, Krützen M, Kwon SB, Larison B, Lee SG, Lehmann M, Lemaitre JF, Levine AJ, Li C, Li X, Lim AR, Lin DTS, Lindemann DM, Little TJ, Macoretta N, Maddox D, Matkin CO, Mattison JA, McClure M, Mergl J, Meudt JJ, Montano GA, Mozhui K, Munshi-South J, Naderi A, Nagy M, Narayan P, Nathanielsz PW, Nguyen NB, Niehrs C, O'Brien JK, O'Tierney Ginn P, Odom DT, Ophir AG, Osborn S, Ostrander EA, Parsons KM, Paul KC, Pellegrini M, Peters KJ, Pedersen AB, Petersen JL, Pietersen DW, Pinho GM, Plassais J, Poganik JR, Prado NA, Reddy P, Rey B, Ritz BR, Robbins J, Rodriguez M, Russell J, Rydkina E, Sailer LL, Salmon AB, Sanghavi A, Schachtschneider KM, Schmitt D, Schmitt T, Schomacher L, Schook LB, Sears KE, Seifert AW, Seluanov A, Shafer ABA, Shanmuganayagam D, Shindyapina AV, Simmons M, Singh K, Sinha I, Slone J, Snell RG, Soltanmaohammadi E, Spangler ML, Spriggs MC, Staggs L, Stedman N, Steinman KJ, Stewart DT, Sugrue VJ, Szladovits B, Takahashi JS, Takasugi M, Teeling EC, Thompson MJ, Van Bonn B, Vernes SC, Villar D, Vinters HV, Wallingford MC, Wang N, Wayne RK, Wilkinson GS, Williams CK, Williams RW, Yang XW, Yao M, Young BG, Zhang B, Zhang Z, Zhao P, Zhao Y, Zhou W, Zimmermann J, Ernst J, Raj K, Horvath S. Author Correction: Universal DNA methylation age across mammalian tissues. Nat Aging 2023;3:1462. [PMID: 37674040 PMCID: PMC10645586 DOI: 10.1038/s43587-023-00499-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/08/2023]

Affiliation(s)

A T Lu Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA Altos Labs, San Diego Institute of Science, San Diego, CA, USA
Z Fei Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA Department of Statistics, University of California, Riverside, Riverside, CA, USA
A Haghani Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA Altos Labs, San Diego Institute of Science, San Diego, CA, USA
T R Robeck Zoological SeaWorld Parks and Entertainment, Orlando, FL, USA
J A Zoller Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA
C Z Li Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA
R Lowe Altos Labs, Cambridge Institute of Science, Cambridge, UK
Q Yan Altos Labs, San Diego Institute of Science, San Diego, CA, USA
J Zhang Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
H Vu Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA Department of Biological Chemistry, University of California, Los Angeles, Los Angeles, CA, USA
J Ablaeva Department of Biology, University of Rochester, Rochester, NY, USA
V A Acosta-Rodriguez Department of Neuroscience, Peter O'Donnell Jr. Brain Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA
D M Adams Department of Biology, University of Maryland, College Park, MD, USA
J Almunia Loro Parque Fundacion, Puerto de la Cruz, Spain
A Aloysius Department of Biology, University of Kentucky, Lexington, KY, USA
R Ardehali Division of Cardiology, Department of Internal Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
A Arneson Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA Department of Biological Chemistry, University of California, Los Angeles, Los Angeles, CA, USA
C S Baker Marine Mammal Institute, Oregon State University, Newport, OR, USA
G Banks School of Science and Technology, Clifton Campus, Nottingham Trent University, Nottingham, UK
K Belov School of Life and Environmental Sciences, the University of Sydney, Sydney, New South Wales, Australia
N C Bennett Department of Zoology and Entomology, University of Pretoria, Hatfield, South Africa
P Black Busch Gardens Tampa, Tampa, FL, USA
D T Blumstein Department of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA, USA Rocky Mountain Biological Laboratory, Crested Butte, CO, USA
E K Bors Marine Mammal Institute, Oregon State University, Newport, OR, USA
C E Breeze Altius Institute for Biomedical Sciences, Seattle, WA, USA
R T Brooke Epigenetic Clock Development Foundation, Los Angeles, CA, USA
J L Brown Center for Species Survival, Smithsonian Conservation Biology Institute, Front Royal, VA, USA
G G Carter Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Columbus, OH, USA
A Caulton AgResearch, Invermay Agricultural Centre, Mosgiel, New Zealand Department of Biochemistry, University of Otago, Dunedin, New Zealand
J M Cavin Gulf World, Dolphin Company, Panama City Beach, FL, USA
L Chakrabarti School of Veterinary Medicine and Science, University of Nottingham, Nottingham, UK
I Chatzistamou Department of Pathology, Microbiology and Immunology, School of Medicine, University of South Carolina, Columbia, SC, USA
H Chen Department of Pharmacology, Addiction Science and Toxicology, the University of Tennessee Health Science Center, Memphis, TN, USA
K Cheng Medical Informatics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
P Chiavellini Biochemistry Research Institute of La Plata, Histology and Pathology, School of Medicine, University of La Plata, La Plata, Argentina
O W Choi Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
S M Clarke AgResearch, Invermay Agricultural Centre, Mosgiel, New Zealand
L N Cooper Department of Anatomy and Neurobiology, Northeast Ohio Medical University, Rootstown, OH, USA
M L Cossette Department of Environmental and Life Sciences, Trent University, Peterborough, Ontario, Canada
J Day Taronga Institute of Science and Learning, Taronga Conservation Society Australia, Mosman, New South Wales, Australia
J DeYoung Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
S DiRocco SeaWorld of Florida, Orlando, FL, USA
C Dold Zoological Operations, SeaWorld Parks and Entertainment, Orlando, FL, USA
E E Ehmke Duke Lemur Center, Durham, NC, USA
C K Emmons Conservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, USA
S Emmrich Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
E Erbay Altos Labs, San Francisco, CA, USA
C Erlacher-Reid SeaWorld of Florida, Orlando, FL, USA SeaWorld Orlando, Orlando, FL, USA
C G Faulkes School of Biological and Behavioural Sciences, Queen Mary University of London, London, UK
S H Ferguson Fisheries and Oceans Canada, Freshwater Institute, Winnipeg, Manitoba, Canada Department of Biological Sciences, University of Manitoba, Winnipeg, Manitoba, Canada
C J Finno Department of Population Health and Reproduction, University of California, Davis School of Veterinary Medicine, Davis, CA, USA
J E Flower Mystic Aquarium, Mystic, CT, USA
J M Gaillard Universite de Lyon, Universite Lyon 1, CNRS, Laboratoire de Biometrie et Biologie Evolutive, Villeurbanne, France
E Garde Greenland Institute of Natural Resources, Nuuk, Greenland
L Gerber Evolution and Ecology Research Centre, School of Biological, Earth and Environmental Sciences, UNSW Sydney, Sydney, New South Wales, Australia
V N Gladyshev Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
V Gorbunova Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
R G Goya Biochemistry Research Institute of La Plata, Histology and Pathology, School of Medicine, University of La Plata, La Plata, Argentina
M J Grant Applied Translational Genetics Group, School of Biological Sciences, Centre for Brain Research, the University of Auckland, Auckland, New Zealand
C B Green Department of Neuroscience, Peter O'Donnell Jr. Brain Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA
E N Hales Department of Population Health and Reproduction, University of California, Davis School of Veterinary Medicine, Davis, CA, USA
M B Hanson Conservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, USA
D W Hart Department of Zoology and Entomology, University of Pretoria, Hatfield, South Africa
M Haulena Vancouver Aquarium, Vancouver, British Columbia, Canada
K Herrick SeaWorld of California, San Diego, CA, USA
A N Hogan Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA
C J Hogg School of Life and Environmental Sciences, the University of Sydney, Sydney, New South Wales, Australia
T A Hore Department of Anatomy, University of Otago, Dunedin, New Zealand
T Huang Division of Human Genetics, Department of Pediatrics, University at Buffalo, Buffalo, NY, USA Division of Genetics and Metabolism, Oishei Children's Hospital, Buffalo, NY, USA
J C Izpisua Belmonte Altos Labs, San Diego Institute of Science, San Diego, CA, USA
A J Jasinska Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
G Jones School of Biological Sciences, University of Bristol, Bristol, UK
E Jourdain Norwegian Orca Survey, Andenes, Norway
O Kashpur Mother Infant Research Institute, Tufts Medical Center, Boston, MA, USA
H Katcher Yuvan Research, Mountain View, CA, USA
E Katsumata Kamogawa Sea World, Kamogawa, Japan
V Kaza Peromyscus Genetic Stock Center, University of South Carolina, Columbia, SC, USA
H Kiaris Peromyscus Genetic Stock Center, University of South Carolina, Columbia, SC, USA Department of Drug Discovery and Biomedical Sciences, College of Pharmacy, University of South Carolina, Columbia, SC, USA
M S Kobor Edwin S.H. Leong Healthy Aging Program, Centre for Molecular Medicine and Therapeutics, University of British Columbia, Vancouver, British Columbia, Canada
P Kordowitzki Institute of Animal Reproduction and Food Research of the Polish Academy of Sciences, Olsztyn, Poland Institute for Veterinary Medicine, Nicolaus Copernicus University, Torun, Poland
W R Koski LGL Limited, King City, Ontario, Canada
M Krützen Evolutionary Genetics Group, Department of Evolutionary Anthropology, University of Zurich, Zurich, Switzerland
S B Kwon Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA Department of Biological Chemistry, University of California, Los Angeles, Los Angeles, CA, USA
B Larison Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA Center for Tropical Research, Institute for the Environment and Sustainability, UCLA, Los Angeles, CA, USA
S G Lee Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
M Lehmann Biochemistry Research Institute of La Plata, Histology and Pathology, School of Medicine, University of La Plata, La Plata, Argentina
J F Lemaitre Universite de Lyon, Universite Lyon 1, CNRS, Laboratoire de Biometrie et Biologie Evolutive, Villeurbanne, France
A J Levine Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
C Li Texas Pregnancy and Life-course Health Center, Southwest National Primate Research Center, San Antonio, TX, USA Department of Animal Science, College of Agriculture and Natural Resources, Laramie, WY, USA
X Li Technology Center for Genomics and Bioinformatics, Department of Pathology and Laboratory Medicine, University of California, Los Angeles, Los Angeles, CA, USA
A R Lim Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
D T S Lin Centre for Molecular Medicine and Therapeutics, BC Children's Hospital Research Institute, University of British Columbia, Vancouver, British Columbia, Canada
D M Lindemann SeaWorld of Florida, Orlando, FL, USA
T J Little Institute of Ecology and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh, UK
N Macoretta Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
D Maddox White Oak Conservation, Yulee, FL, USA
C O Matkin North Gulf Oceanic Society, Homer, AK, USA
J A Mattison Translational Gerontology Branch, National Institute on Aging Intramural Research Program, National Institutes of Health, Baltimore, MD, USA
M McClure ABS Global, DeForest, WI, USA
J Mergl Marineland of Canada, Niagara Falls, Ontario, Canada
J J Meudt Biomedical and Genomic Research Group, Department of Animal and Dairy Sciences, University of Wisconsin-Madison, Madison, WI, USA
G A Montano Zoological Operations, SeaWorld Parks and Entertainment, Orlando, FL, USA
K Mozhui Department of Preventive Medicine, University of Tennessee Health Science Center, College of Medicine, Memphis, TN, USA Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, College of Medicine, Memphis, TN, USA
J Munshi-South Louis Calder Center-Biological Field Station, Department of Biological Sciences, Fordham University, Armonk, NY, USA
A Naderi Department of Drug Discovery and Biomedical Sciences, College of Pharmacy, University of South Carolina, Columbia, SC, USA
M Nagy Museum fur Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Berlin, Germany
P Narayan Applied Translational Genetics Group, School of Biological Sciences, Centre for Brain Research, the University of Auckland, Auckland, New Zealand
P W Nathanielsz Texas Pregnancy and Life-course Health Center, Southwest National Primate Research Center, San Antonio, TX, USA Department of Animal Science, College of Agriculture and Natural Resources, Laramie, WY, USA
N B Nguyen Division of Cardiology, Department of Internal Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
C Niehrs Institute of Molecular Biology, Mainz, Germany Division of Molecular Embryology, DKFZ-ZMBH Alliance, Heidelberg, Germany
J K O'Brien Taronga Institute of Science and Learning, Taronga Conservation Society Australia, Mosman, New South Wales, Australia
P O'Tierney Ginn Mother Infant Research Institute, Tufts Medical Center, Boston, MA, USA Department of Obstetrics and Gynecology, Tufts University School of Medicine, Boston, MA, USA
D T Odom Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK Division of Regulatory Genomics and Cancer Evolution, Deutsches Krebsforschungszentrum, Heidelberg, Germany
A G Ophir Department of Psychology, Cornell University, Ithaca, NY, USA
S Osborn SeaWorld of Texas, San Antonio, TX, USA
E A Ostrander Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA
K M Parsons Conservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, USA
K C Paul Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
M Pellegrini Department of Molecular Cell and Developmental Biology, University of California, Los Angeles, Los Angeles, CA, USA
K J Peters Evolutionary Genetics Group, Department of Evolutionary Anthropology, University of Zurich, Zurich, Switzerland School of Earth, Atmospheric and Life Sciences, University of Wollongong, Wollongong, Australia
A B Pedersen Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK
J L Petersen Department of Animal Science, University of Nebraska, Lincoln, NE, USA
D W Pietersen Mammal Research Institute, Department of Zoology and Entomology, University of Pretoria, Hatfield, South Africa
G M Pinho Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA
J Plassais Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA
J R Poganik Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
N A Prado Department of Biology, College of Arts and Science, Adelphi University, Garden City, NY, USA
P Reddy Altos Labs, San Diego Institute of Science, San Diego, CA, USA Salk Institute for Biological Studies, La Jolla, CA, USA
B Rey Universite de Lyon, Universite Lyon 1, CNRS, Laboratoire de Biometrie et Biologie Evolutive, Villeurbanne, France
B R Ritz Department of Epidemiology, UCLA Fielding School of Public Health, Los Angeles, CA, USA Department of Environmental Health Sciences, UCLA Fielding School of Public Health, Los Angeles, CA, USA Department of Neurology, UCLA David Geffen School of Medicine, Los Angeles, CA, USA
J Robbins Center for Coastal Studies, Provincetown, MA, USA
M Rodriguez Miami Seaquarium, Miami, FL, USA
J Russell SeaWorld of California, San Diego, CA, USA
E Rydkina Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
L L Sailer Department of Psychology, Cornell University, Ithaca, NY, USA
A B Salmon The Sam and Ann Barshop Institute for Longevity and Aging Studies and Department of Molecular Medicine, UT Health San Antonio and the Geriatric Research Education and Clinical Center, South Texas Veterans Healthcare System, San Antonio, TX, USA
A Sanghavi Yuvan Research, Mountain View, CA, USA
K M Schachtschneider Department of Radiology, University of Illinois at Chicago, Chicago, IL, USA Department of Biochemistry and Molecular Genetics, University of Illinois at Chicago, Chicago, IL, USA National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, IL, USA
D Schmitt College of Agriculture, Missouri State University, Springfield, MO, USA
T Schmitt SeaWorld of California, San Diego, CA, USA
L Schomacher Institute of Molecular Biology, Mainz, Germany
L B Schook Department of Radiology, University of Illinois at Chicago, Chicago, IL, USA Department of Animal Sciences, University of Illinois at Urbana-Champaign, Champaign, IL, USA
K E Sears Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA Department of Molecular Cell and Developmental Biology, University of California, Los Angeles, Los Angeles, CA, USA
A W Seifert Department of Biology, University of Kentucky, Lexington, KY, USA
A Seluanov Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
A B A Shafer Department of Forensic Science, Environmental and Life Sciences, Trent University, Peterborough, Ontario, Canada
D Shanmuganayagam Biomedical and Genomic Research Group, Department of Animal and Dairy Sciences, University of Wisconsin-Madison, Madison, WI, USA Department of Surgery, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA
A V Shindyapina Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
M Simmons Duke Lemur Center, Durham, NC, USA
K Singh Shobhaben Pratapbhai Patel School of Pharmacy and Technology Management, SVKM'S NMIMS University, Mumbai, India
I Sinha Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA
J Slone Division of Human Genetics, Department of Pediatrics, University at Buffalo, Buffalo, NY, USA
R G Snell Applied Translational Genetics Group, School of Biological Sciences, Centre for Brain Research, the University of Auckland, Auckland, New Zealand
E Soltanmaohammadi Department of Drug Discovery and Biomedical Sciences, College of Pharmacy, University of South Carolina, Columbia, SC, USA
M L Spangler Department of Animal Science, University of Nebraska, Lincoln, NE, USA
M C Spriggs Busch Gardens Tampa, Tampa, FL, USA
L Staggs SeaWorld of Florida, Orlando, FL, USA
N Stedman Busch Gardens Tampa, Tampa, FL, USA
K J Steinman Species Preservation Laboratory, SeaWorld San Diego, San Diego, CA, USA
D T Stewart Biology Department, Acadia University, Wolfville, Nova Scotia, Canada
V J Sugrue Department of Anatomy, University of Otago, Dunedin, New Zealand
B Szladovits Department of Pathobiology and Population Sciences, Royal Veterinary College, Hatfield, UK
J S Takahashi Department of Neuroscience, Peter O'Donnell Jr. Brain Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA Howard Hughes Medical Institute, Department of Neuroscience, University of Texas Southwestern Medical Center, Dallas, TX, USA
M Takasugi Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
E C Teeling School of Biology and Environmental Science, University College Dublin, Dublin, Ireland
M J Thompson Department of Molecular Cell and Developmental Biology, University of California, Los Angeles, Los Angeles, CA, USA
B Van Bonn John G. Shedd Aquarium, Chicago, IL, USA
S C Vernes School of Biology, the University of St Andrews, Fife, UK Neurogenetics of Vocal Communication Group, Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands
D Villar Blizard Institute, Faculty of Medicine and Dentistry, Queen Mary University of London, London, UK
H V Vinters Department of Pathology and Laboratory Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA
M C Wallingford Mother Infant Research Institute, Tufts Medical Center, Boston, MA, USA Division of Obstetrics and Gynecology, Tufts University School of Medicine, Boston, MA, USA
N Wang Center for Neurobehavioral Genetics, Jane and Terry Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, Los Angeles, CA, USA Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA
R K Wayne Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA
G S Wilkinson Department of Biology, University of Maryland, College Park, MD, USA
C K Williams Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
R W Williams Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, College of Medicine, Memphis, TN, USA
X W Yang Center for Neurobehavioral Genetics, Jane and Terry Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, Los Angeles, CA, USA Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA
M Yao Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA
B G Young Fisheries and Oceans Canada, Winnipeg, Manitoba, Canada
B Zhang Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
Z Zhang Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
P Zhao Division of Cardiology, Department of Internal Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research, University of California, Los Angeles, CA, USA
Y Zhao Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
W Zhou Center for Computational and Genomic Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, USA
J Zimmermann Department of Mathematics and Technology, University of Applied Sciences Koblenz, Koblenz, Germany
J Ernst Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA Department of Biological Chemistry, University of California, Los Angeles, Los Angeles, CA, USA
K Raj Altos Labs, Cambridge Institute of Science, Cambridge, UK
S Horvath Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA. Altos Labs, San Diego Institute of Science, San Diego, CA, USA. Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA.

Collapse

Lu AT, Fei Z, Haghani A, Robeck TR, Zoller JA, Li CZ, Lowe R, Yan Q, Zhang J, Vu H, Ablaeva J, Acosta-Rodriguez VA, Adams DM, Almunia J, Aloysius A, Ardehali R, Arneson A, Baker CS, Banks G, Belov K, Bennett NC, Black P, Blumstein DT, Bors EK, Breeze CE, Brooke RT, Brown JL, Carter GG, Caulton A, Cavin JM, Chakrabarti L, Chatzistamou I, Chen H, Cheng K, Chiavellini P, Choi OW, Clarke SM, Cooper LN, Cossette ML, Day J, DeYoung J, DiRocco S, Dold C, Ehmke EE, Emmons CK, Emmrich S, Erbay E, Erlacher-Reid C, Faulkes CG, Ferguson SH, Finno CJ, Flower JE, Gaillard JM, Garde E, Gerber L, Gladyshev VN, Gorbunova V, Goya RG, Grant MJ, Green CB, Hales EN, Hanson MB, Hart DW, Haulena M, Herrick K, Hogan AN, Hogg CJ, Hore TA, Huang T, Izpisua Belmonte JC, Jasinska AJ, Jones G, Jourdain E, Kashpur O, Katcher H, Katsumata E, Kaza V, Kiaris H, Kobor MS, Kordowitzki P, Koski WR, Krützen M, Kwon SB, Larison B, Lee SG, Lehmann M, Lemaitre JF, Levine AJ, Li C, Li X, Lim AR, Lin DTS, Lindemann DM, Little TJ, Macoretta N, Maddox D, Matkin CO, Mattison JA, McClure M, Mergl J, Meudt JJ, Montano GA, Mozhui K, Munshi-South J, Naderi A, Nagy M, Narayan P, Nathanielsz PW, Nguyen NB, Niehrs C, O'Brien JK, O'Tierney Ginn P, Odom DT, Ophir AG, Osborn S, Ostrander EA, Parsons KM, Paul KC, Pellegrini M, Peters KJ, Pedersen AB, Petersen JL, Pietersen DW, Pinho GM, Plassais J, Poganik JR, Prado NA, Reddy P, Rey B, Ritz BR, Robbins J, Rodriguez M, Russell J, Rydkina E, Sailer LL, Salmon AB, Sanghavi A, Schachtschneider KM, Schmitt D, Schmitt T, Schomacher L, Schook LB, Sears KE, Seifert AW, Seluanov A, Shafer ABA, Shanmuganayagam D, Shindyapina AV, Simmons M, Singh K, Sinha I, Slone J, Snell RG, Soltanmaohammadi E, Spangler ML, Spriggs MC, Staggs L, Stedman N, Steinman KJ, Stewart DT, Sugrue VJ, Szladovits B, Takahashi JS, Takasugi M, Teeling EC, Thompson MJ, Van Bonn B, Vernes SC, Villar D, Vinters HV, Wallingford MC, Wang N, Wayne RK, Wilkinson GS, Williams CK, Williams RW, Yang XW, Yao M, Young BG, Zhang B, Zhang Z, Zhao P, Zhao Y, Zhou W, Zimmermann J, Ernst J, Raj K, Horvath S. Universal DNA methylation age across mammalian tissues. Nat Aging 2023;3:1144-1166. [PMID: 37563227 PMCID: PMC10501909 DOI: 10.1038/s43587-023-00462-6] [Citation(s) in RCA: 28] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Accepted: 06/21/2023] [Indexed: 08/12/2023]

Affiliation(s)

A T Lu Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA Altos Labs, San Diego Institute of Science, San Diego, CA, USA
Z Fei Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA Department of Statistics, University of California, Riverside, Riverside, CA, USA
A Haghani Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA Altos Labs, San Diego Institute of Science, San Diego, CA, USA
T R Robeck Zoological SeaWorld Parks and Entertainment, Orlando, FL, USA
J A Zoller Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA
C Z Li Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA
R Lowe Altos Labs, Cambridge Institute of Science, Cambridge, UK
Q Yan Altos Labs, San Diego Institute of Science, San Diego, CA, USA
J Zhang Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
H Vu Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA Department of Biological Chemistry, University of California, Los Angeles, Los Angeles, CA, USA
J Ablaeva Department of Biology, University of Rochester, Rochester, NY, USA
V A Acosta-Rodriguez Department of Neuroscience, Peter O'Donnell Jr. Brain Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA
D M Adams Department of Biology, University of Maryland, College Park, MD, USA
J Almunia Loro Parque Fundacion, Puerto de la Cruz, Spain
A Aloysius Department of Biology, University of Kentucky, Lexington, KY, USA
R Ardehali Division of Cardiology, Department of Internal Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
A Arneson Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA Department of Biological Chemistry, University of California, Los Angeles, Los Angeles, CA, USA
C S Baker Marine Mammal Institute, Oregon State University, Newport, OR, USA
G Banks School of Science and Technology, Clifton Campus, Nottingham Trent University, Nottingham, UK
K Belov School of Life and Environmental Sciences, the University of Sydney, Sydney, New South Wales, Australia
N C Bennett Department of Zoology and Entomology, University of Pretoria, Hatfield, South Africa
P Black Busch Gardens Tampa, Tampa, FL, USA
D T Blumstein Department of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA, USA Rocky Mountain Biological Laboratory, Crested Butte, CO, USA
E K Bors Marine Mammal Institute, Oregon State University, Newport, OR, USA
C E Breeze Altius Institute for Biomedical Sciences, Seattle, WA, USA
R T Brooke Epigenetic Clock Development Foundation, Los Angeles, CA, USA
J L Brown Center for Species Survival, Smithsonian Conservation Biology Institute, Front Royal, VA, USA
G G Carter Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Columbus, OH, USA
A Caulton AgResearch, Invermay Agricultural Centre, Mosgiel, New Zealand Department of Biochemistry, University of Otago, Dunedin, New Zealand
J M Cavin Gulf World, Dolphin Company, Panama City Beach, FL, USA
L Chakrabarti School of Veterinary Medicine and Science, University of Nottingham, Nottingham, UK
I Chatzistamou Department of Pathology, Microbiology and Immunology, School of Medicine, University of South Carolina, Columbia, SC, USA
H Chen Department of Pharmacology, Addiction Science and Toxicology, the University of Tennessee Health Science Center, Memphis, TN, USA
K Cheng Medical Informatics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
P Chiavellini Biochemistry Research Institute of La Plata, Histology and Pathology, School of Medicine, University of La Plata, La Plata, Argentina
O W Choi Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
S M Clarke AgResearch, Invermay Agricultural Centre, Mosgiel, New Zealand
L N Cooper Department of Anatomy and Neurobiology, Northeast Ohio Medical University, Rootstown, OH, USA
M L Cossette Department of Environmental and Life Sciences, Trent University, Peterborough, Ontario, Canada
J Day Taronga Institute of Science and Learning, Taronga Conservation Society Australia, Mosman, New South Wales, Australia
J DeYoung Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
S DiRocco SeaWorld of Florida, Orlando, FL, USA
C Dold Zoological Operations, SeaWorld Parks and Entertainment, Orlando, FL, USA
E E Ehmke Duke Lemur Center, Durham, NC, USA
C K Emmons Conservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, USA
S Emmrich Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
E Erbay Altos Labs, San Francisco, CA, USA
C Erlacher-Reid SeaWorld of Florida, Orlando, FL, USA SeaWorld Orlando, Orlando, FL, USA
C G Faulkes School of Biological and Behavioural Sciences, Queen Mary University of London, London, UK
S H Ferguson Fisheries and Oceans Canada, Freshwater Institute, Winnipeg, Manitoba, Canada Department of Biological Sciences, University of Manitoba, Winnipeg, Manitoba, Canada
C J Finno Department of Population Health and Reproduction, University of California, Davis School of Veterinary Medicine, Davis, CA, USA
J E Flower Mystic Aquarium, Mystic, CT, USA
J M Gaillard Universite de Lyon, Universite Lyon 1, CNRS, Laboratoire de Biometrie et Biologie Evolutive, Villeurbanne, France
E Garde Greenland Institute of Natural Resources, Nuuk, Greenland
L Gerber Evolution and Ecology Research Centre, School of Biological, Earth and Environmental Sciences, UNSW Sydney, Sydney, New South Wales, Australia
V N Gladyshev Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
V Gorbunova Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
R G Goya Biochemistry Research Institute of La Plata, Histology and Pathology, School of Medicine, University of La Plata, La Plata, Argentina
M J Grant Applied Translational Genetics Group, School of Biological Sciences, Centre for Brain Research, the University of Auckland, Auckland, New Zealand
C B Green Department of Neuroscience, Peter O'Donnell Jr. Brain Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA
E N Hales Department of Population Health and Reproduction, University of California, Davis School of Veterinary Medicine, Davis, CA, USA
M B Hanson Conservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, USA
D W Hart Department of Zoology and Entomology, University of Pretoria, Hatfield, South Africa
M Haulena Vancouver Aquarium, Vancouver, British Columbia, Canada
K Herrick SeaWorld of California, San Diego, CA, USA
A N Hogan Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA
C J Hogg School of Life and Environmental Sciences, the University of Sydney, Sydney, New South Wales, Australia
T A Hore Department of Anatomy, University of Otago, Dunedin, New Zealand
T Huang Division of Human Genetics, Department of Pediatrics, University at Buffalo, Buffalo, NY, USA Division of Genetics and Metabolism, Oishei Children's Hospital, Buffalo, NY, USA
J C Izpisua Belmonte Altos Labs, San Diego Institute of Science, San Diego, CA, USA
A J Jasinska Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
G Jones School of Biological Sciences, University of Bristol, Bristol, UK
E Jourdain Norwegian Orca Survey, Andenes, Norway
O Kashpur Mother Infant Research Institute, Tufts Medical Center, Boston, MA, USA
H Katcher Yuvan Research, Mountain View, CA, USA
E Katsumata Kamogawa Sea World, Kamogawa, Japan
V Kaza Peromyscus Genetic Stock Center, University of South Carolina, Columbia, SC, USA
H Kiaris Peromyscus Genetic Stock Center, University of South Carolina, Columbia, SC, USA Department of Drug Discovery and Biomedical Sciences, College of Pharmacy, University of South Carolina, Columbia, SC, USA
M S Kobor Edwin S.H. Leong Healthy Aging Program, Centre for Molecular Medicine and Therapeutics, University of British Columbia, Vancouver, British Columbia, Canada
P Kordowitzki Institute of Animal Reproduction and Food Research of the Polish Academy of Sciences, Olsztyn, Poland Institute for Veterinary Medicine, Nicolaus Copernicus University, Torun, Poland
W R Koski LGL Limited, King City, Ontario, Canada
M Krützen Evolutionary Genetics Group, Department of Evolutionary Anthropology, University of Zurich, Zurich, Switzerland
S B Kwon Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA Department of Biological Chemistry, University of California, Los Angeles, Los Angeles, CA, USA
B Larison Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA Center for Tropical Research, Institute for the Environment and Sustainability, UCLA, Los Angeles, CA, USA
S G Lee Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
M Lehmann Biochemistry Research Institute of La Plata, Histology and Pathology, School of Medicine, University of La Plata, La Plata, Argentina
J F Lemaitre Universite de Lyon, Universite Lyon 1, CNRS, Laboratoire de Biometrie et Biologie Evolutive, Villeurbanne, France
A J Levine Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
C Li Texas Pregnancy and Life-course Health Center, Southwest National Primate Research Center, San Antonio, TX, USA Department of Animal Science, College of Agriculture and Natural Resources, Laramie, WY, USA
X Li Technology Center for Genomics and Bioinformatics, Department of Pathology and Laboratory Medicine, University of California, Los Angeles, Los Angeles, CA, USA
A R Lim Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
D T S Lin Centre for Molecular Medicine and Therapeutics, BC Children's Hospital Research Institute, University of British Columbia, Vancouver, British Columbia, Canada
D M Lindemann SeaWorld of Florida, Orlando, FL, USA
T J Little Institute of Ecology and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh, UK
N Macoretta Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
D Maddox White Oak Conservation, Yulee, FL, USA
C O Matkin North Gulf Oceanic Society, Homer, AK, USA
J A Mattison Translational Gerontology Branch, National Institute on Aging Intramural Research Program, National Institutes of Health, Baltimore, MD, USA
M McClure ABS Global, DeForest, WI, USA
J Mergl Marineland of Canada, Niagara Falls, Ontario, Canada
J J Meudt Biomedical and Genomic Research Group, Department of Animal and Dairy Sciences, University of Wisconsin-Madison, Madison, WI, USA
G A Montano Zoological Operations, SeaWorld Parks and Entertainment, Orlando, FL, USA
K Mozhui Department of Preventive Medicine, University of Tennessee Health Science Center, College of Medicine, Memphis, TN, USA Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, College of Medicine, Memphis, TN, USA
J Munshi-South Louis Calder Center-Biological Field Station, Department of Biological Sciences, Fordham University, Armonk, NY, USA
A Naderi Department of Drug Discovery and Biomedical Sciences, College of Pharmacy, University of South Carolina, Columbia, SC, USA
M Nagy Museum fur Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Berlin, Germany
P Narayan Applied Translational Genetics Group, School of Biological Sciences, Centre for Brain Research, the University of Auckland, Auckland, New Zealand
P W Nathanielsz Texas Pregnancy and Life-course Health Center, Southwest National Primate Research Center, San Antonio, TX, USA Department of Animal Science, College of Agriculture and Natural Resources, Laramie, WY, USA
N B Nguyen Division of Cardiology, Department of Internal Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
C Niehrs Institute of Molecular Biology, Mainz, Germany Division of Molecular Embryology, DKFZ-ZMBH Alliance, Heidelberg, Germany
J K O'Brien Taronga Institute of Science and Learning, Taronga Conservation Society Australia, Mosman, New South Wales, Australia
P O'Tierney Ginn Mother Infant Research Institute, Tufts Medical Center, Boston, MA, USA Department of Obstetrics and Gynecology, Tufts University School of Medicine, Boston, MA, USA
D T Odom Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK Division of Regulatory Genomics and Cancer Evolution, Deutsches Krebsforschungszentrum, Heidelberg, Germany
A G Ophir Department of Psychology, Cornell University, Ithaca, NY, USA
S Osborn SeaWorld of Texas, San Antonio, TX, USA
E A Ostrander Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA
K M Parsons Conservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, USA
K C Paul Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
M Pellegrini Department of Molecular Cell and Developmental Biology, University of California, Los Angeles, Los Angeles, CA, USA
K J Peters Evolutionary Genetics Group, Department of Evolutionary Anthropology, University of Zurich, Zurich, Switzerland School of Earth, Atmospheric and Life Sciences, University of Wollongong, Wollongong, Australia
A B Pedersen Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK
J L Petersen Department of Animal Science, University of Nebraska, Lincoln, NE, USA
D W Pietersen Mammal Research Institute, Department of Zoology and Entomology, University of Pretoria, Hatfield, South Africa
G M Pinho Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA
J Plassais Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA
J R Poganik Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
N A Prado Department of Biology, College of Arts and Science, Adelphi University, Garden City, NY, USA
P Reddy Altos Labs, San Diego Institute of Science, San Diego, CA, USA Salk Institute for Biological Studies, La Jolla, CA, USA
B Rey Universite de Lyon, Universite Lyon 1, CNRS, Laboratoire de Biometrie et Biologie Evolutive, Villeurbanne, France
B R Ritz Department of Epidemiology, UCLA Fielding School of Public Health, Los Angeles, CA, USA Department of Environmental Health Sciences, UCLA Fielding School of Public Health, Los Angeles, CA, USA Department of Neurology, UCLA David Geffen School of Medicine, Los Angeles, CA, USA
J Robbins Center for Coastal Studies, Provincetown, MA, USA
M Rodriguez Miami Seaquarium, Miami, FL, USA
J Russell SeaWorld of California, San Diego, CA, USA
E Rydkina Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
L L Sailer Department of Psychology, Cornell University, Ithaca, NY, USA
A B Salmon The Sam and Ann Barshop Institute for Longevity and Aging Studies and Department of Molecular Medicine, UT Health San Antonio and the Geriatric Research Education and Clinical Center, South Texas Veterans Healthcare System, San Antonio, TX, USA
A Sanghavi Yuvan Research, Mountain View, CA, USA
K M Schachtschneider Department of Radiology, University of Illinois at Chicago, Chicago, IL, USA Department of Biochemistry and Molecular Genetics, University of Illinois at Chicago, Chicago, IL, USA National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, IL, USA
D Schmitt College of Agriculture, Missouri State University, Springfield, MO, USA
T Schmitt SeaWorld of California, San Diego, CA, USA
L Schomacher Institute of Molecular Biology, Mainz, Germany
L B Schook Department of Radiology, University of Illinois at Chicago, Chicago, IL, USA Department of Animal Sciences, University of Illinois at Urbana-Champaign, Champaign, IL, USA
K E Sears Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA Department of Molecular Cell and Developmental Biology, University of California, Los Angeles, Los Angeles, CA, USA
A W Seifert Department of Biology, University of Kentucky, Lexington, KY, USA
A Seluanov Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
A B A Shafer Department of Forensic Science, Environmental and Life Sciences, Trent University, Peterborough, Ontario, Canada
D Shanmuganayagam Biomedical and Genomic Research Group, Department of Animal and Dairy Sciences, University of Wisconsin-Madison, Madison, WI, USA Department of Surgery, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA
A V Shindyapina Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
M Simmons Duke Lemur Center, Durham, NC, USA
K Singh Shobhaben Pratapbhai Patel School of Pharmacy and Technology Management, SVKM'S NMIMS University, Mumbai, India
I Sinha Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA
J Slone Division of Human Genetics, Department of Pediatrics, University at Buffalo, Buffalo, NY, USA
R G Snell Applied Translational Genetics Group, School of Biological Sciences, Centre for Brain Research, the University of Auckland, Auckland, New Zealand
E Soltanmaohammadi Department of Drug Discovery and Biomedical Sciences, College of Pharmacy, University of South Carolina, Columbia, SC, USA
M L Spangler Department of Animal Science, University of Nebraska, Lincoln, NE, USA
M C Spriggs Busch Gardens Tampa, Tampa, FL, USA
L Staggs SeaWorld of Florida, Orlando, FL, USA
N Stedman Busch Gardens Tampa, Tampa, FL, USA
K J Steinman Species Preservation Laboratory, SeaWorld San Diego, San Diego, CA, USA
D T Stewart Biology Department, Acadia University, Wolfville, Nova Scotia, Canada
V J Sugrue Department of Anatomy, University of Otago, Dunedin, New Zealand
B Szladovits Department of Pathobiology and Population Sciences, Royal Veterinary College, Hatfield, UK
J S Takahashi Department of Neuroscience, Peter O'Donnell Jr. Brain Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA Howard Hughes Medical Institute, Department of Neuroscience, University of Texas Southwestern Medical Center, Dallas, TX, USA
M Takasugi Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
E C Teeling School of Biology and Environmental Science, University College Dublin, Dublin, Ireland
M J Thompson Department of Molecular Cell and Developmental Biology, University of California, Los Angeles, Los Angeles, CA, USA
B Van Bonn John G. Shedd Aquarium, Chicago, IL, USA
S C Vernes School of Biology, the University of St Andrews, Fife, UK Neurogenetics of Vocal Communication Group, Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands
D Villar Blizard Institute, Faculty of Medicine and Dentistry, Queen Mary University of London, London, UK
H V Vinters Department of Pathology and Laboratory Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA
M C Wallingford Mother Infant Research Institute, Tufts Medical Center, Boston, MA, USA Division of Obstetrics and Gynecology, Tufts University School of Medicine, Boston, MA, USA
N Wang Center for Neurobehavioral Genetics, Jane and Terry Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, Los Angeles, CA, USA Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA
R K Wayne Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA
G S Wilkinson Department of Biology, University of Maryland, College Park, MD, USA
C K Williams Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
R W Williams Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, College of Medicine, Memphis, TN, USA
X W Yang Center for Neurobehavioral Genetics, Jane and Terry Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, Los Angeles, CA, USA Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA
M Yao Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA
B G Young Fisheries and Oceans Canada, Winnipeg, Manitoba, Canada
B Zhang Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
Z Zhang Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
P Zhao Division of Cardiology, Department of Internal Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research, University of California, Los Angeles, CA, USA
Y Zhao Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
W Zhou Center for Computational and Genomic Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, USA
J Zimmermann Department of Mathematics and Technology, University of Applied Sciences Koblenz, Koblenz, Germany
J Ernst Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA Department of Biological Chemistry, University of California, Los Angeles, Los Angeles, CA, USA
K Raj Altos Labs, Cambridge Institute of Science, Cambridge, UK
S Horvath Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA. Altos Labs, San Diego Institute of Science, San Diego, CA, USA. Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA.

Collapse

See GM, Trenhaile-Grannemann MD, Spangler ML, Ciobanu DC, Mote BE. A genome-wide association study for gestation length in swine. Anim Genet 2019;50:539-542. [PMID: 31297858 DOI: 10.1111/age.12822] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/08/2019] [Indexed: 11/26/2022]

Rovadoscki GA, Pertile SFN, Alvarenga AB, Cesar ASM, Pértille F, Petrini J, Franzo V, Soares WVB, Morota G, Spangler ML, Pinto LFB, Carvalho GGP, Lanna DPD, Coutinho LL, Mourão GB. Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep. BMC Genomics 2018;19:375. [PMID: 29783944 PMCID: PMC5963081 DOI: 10.1186/s12864-018-4777-8] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2017] [Accepted: 05/10/2018] [Indexed: 12/22/2022] Open

Affiliation(s)

G A Rovadoscki Department of Animal Science, University of São Paulo (USP) / Luiz de Queiroz College of Agriculture (ESALQ), Av. Pádua Dias, 11, ESALQ/USP, Piracicaba, São Paulo, 13418-900, Brazil
S F N Pertile Department of Animal Science, University of São Paulo (USP) / Luiz de Queiroz College of Agriculture (ESALQ), Av. Pádua Dias, 11, ESALQ/USP, Piracicaba, São Paulo, 13418-900, Brazil
A B Alvarenga Department of Animal Science, University of São Paulo (USP) / Luiz de Queiroz College of Agriculture (ESALQ), Av. Pádua Dias, 11, ESALQ/USP, Piracicaba, São Paulo, 13418-900, Brazil
A S M Cesar Department of Animal Science, University of São Paulo (USP) / Luiz de Queiroz College of Agriculture (ESALQ), Av. Pádua Dias, 11, ESALQ/USP, Piracicaba, São Paulo, 13418-900, Brazil
F Pértille Department of Animal Science, University of São Paulo (USP) / Luiz de Queiroz College of Agriculture (ESALQ), Av. Pádua Dias, 11, ESALQ/USP, Piracicaba, São Paulo, 13418-900, Brazil
J Petrini Department of Animal Science, University of São Paulo (USP) / Luiz de Queiroz College of Agriculture (ESALQ), Av. Pádua Dias, 11, ESALQ/USP, Piracicaba, São Paulo, 13418-900, Brazil
V Franzo Department of Animal Science, University of São Paulo (USP) / Luiz de Queiroz College of Agriculture (ESALQ), Av. Pádua Dias, 11, ESALQ/USP, Piracicaba, São Paulo, 13418-900, Brazil
W V B Soares Institute of Zootechny (IZ), Nova Odessa, SP, Brazil
G Morota Department of Animal Science, University of Nebraska, Lincoln, NE, USA
M L Spangler Department of Animal Science, University of Nebraska, Lincoln, NE, USA
L F B Pinto Department of Animal Science, Federal University of Bahia (UFBA), Salvador, BA, Brazil
G G P Carvalho Department of Animal Science, Federal University of Bahia (UFBA), Salvador, BA, Brazil
D P D Lanna Department of Animal Science, University of São Paulo (USP) / Luiz de Queiroz College of Agriculture (ESALQ), Av. Pádua Dias, 11, ESALQ/USP, Piracicaba, São Paulo, 13418-900, Brazil
L L Coutinho Department of Animal Science, University of São Paulo (USP) / Luiz de Queiroz College of Agriculture (ESALQ), Av. Pádua Dias, 11, ESALQ/USP, Piracicaba, São Paulo, 13418-900, Brazil
G B Mourão Department of Animal Science, University of São Paulo (USP) / Luiz de Queiroz College of Agriculture (ESALQ), Av. Pádua Dias, 11, ESALQ/USP, Piracicaba, São Paulo, 13418-900, Brazil.

Collapse

Wijesena HR, Lents CA, Riethoven JJ, Trenhaile-Grannemann MD, Thorson JF, Keel BN, Miller PS, Spangler ML, Kachman SD, Ciobanu DC. GENOMICS SYMPOSIUM: Using genomic approaches to uncover sources of variation in age at puberty and reproductive longevity in sows. J Anim Sci 2018;95:4196-4205. [PMID: 28992028 DOI: 10.2527/jas2016.1334] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Abstract

Genetic variants associated with traits such as age at puberty and litter size could provide insight into the underlying genetic sources of variation impacting sow reproductive longevity and productivity. Genomewide characterization and gene expression profiling were used using gilts from the University of Nebraska-Lincoln swine resource population ( = 1,644) to identify genetic variants associated with age at puberty and litter size traits. From all reproductive traits studied, the largest fraction of phenotypic variation explained by the Porcine SNP60 BeadArray was for age at puberty (27.3%). In an evaluation data set, the predictive ability of all SNP from high-ranked 1-Mb windows (1 to 50%), based on genetic variance explained in training, was greater (12.3 to 36.8%) compared with the most informative SNP from these windows (6.5 to 23.7%). In the integrated data set ( = 1,644), the top 1% of the 1-Mb windows explained 6.7% of the genetic variation of age at puberty. One of the high-ranked windows detected (SSC2, 12-12.9 Mb) showed pleiotropic features, affecting both age at puberty and litter size traits. The RNA sequencing of the hypothalami arcuate nucleus uncovered 17 differentially expressed genes (adjusted < 0.05) between gilts that became pubertal early (<155 d of age) and late (>180 d of age). Twelve of the differentially expressed genes are upregulated in the late pubertal gilts. One of these genes is involved in energy homeostasis (), a function in which the arcuate nucleus plays an important contribution, linking nutrition with reproductive development. Energy restriction during the gilt development period delayed age at puberty by 7 d but increased the probability of a sow to produce up to 3 parities ( < 0.05). Identification of pleotropic functional polymorphisms may improve accuracy of genomic prediction while facilitating a reduction in sow replacement rates and addressing welfare concerns.

Collapse

Spangler ML. 201 Current Trends in Beef Cattle Genetic Evaluation. J Anim Sci 2018. [DOI: 10.1093/jas/sky073.198] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open

Howard JT, Rathje TA, Bruns CE, Wilson-Wells DF, Kachman SD, Spangler ML. 34 The Impact of Truncating Data on the Predictive Ability of Selection Candidate EBV in Swine Using Ssgblup. J Anim Sci 2018. [DOI: 10.1093/jas/sky073.032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open

Yu H, Spangler ML, Lewis RM, Morota G. 37 An Assessment of Genomic Relatedness across Management Units. J Anim Sci 2018. [DOI: 10.1093/jas/sky073.035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open

Speidel SE, Buckley BA, Boldt RJ, Enns RM, Lee J, Spangler ML, Thomas MG. Genome-wide association study of Stayability and Heifer Pregnancy in Red Angus cattle. J Anim Sci 2018;96:846-853. [PMID: 29471369 PMCID: PMC6093520 DOI: 10.1093/jas/sky041] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2017] [Accepted: 02/15/2018] [Indexed: 11/12/2022] Open

Abstract

Reproductive performance is the most important component of cattle production from the standpoint of economic sustainability of commercial beef enterprises. Heifer Pregnancy (HPG) and Stayability (STAY) genetic predictions are 2 selection tools published by the Red Angus Association of America (RAAA) to assist with improvements in reproductive performance. Given the importance of HPG and STAY to the profitability of commercial beef enterprises, the objective of this study was to identify QTL associated with both HPG and STAY in Red Angus cattle. A genome-wide association study (GWAS) was performed using deregressed HPG and STAY EBV, calculated using a single-trait animal model and a 3-generation pedigree with data from the Spring 2015 RAAA National Cattle Evaluation. Each individual animal possessed 74,659 SNP genotypes. Individual animals with a deregressed EBV reliability > 0.05 were merged with the genotype file and marker quality control was performed. Criteria for sifting genotypes consisted of removing those markers where any of the following were found: average call rate less than 0.85, minor allele frequency < 0.01, lack of Hardy-Weinberg equilibrium (P < 0.0001), or extreme linkage disequilibrium (r2 > 0.99). These criteria resulted in 2,664 animals with 62,807 SNP available for GWAS. Association studies were performed using a Bayes Cπ model in the BOLT software package. Marker significance was calculated as the posterior probability of inclusion (PPI), or the number of instances a specific marker was sampled divided by the total number of samples retained from the Markov chain Monte Carlo chains. Nine markers, with a PPI ≥ 3% were identified as QTL associated with HPG on BTA 1, 11, 13, 23, and 29. Twelve markers, with a PPI ≥ 75% were identified as QTL associated with STAY on BTA 6, 8, 9, 12, 15, 18, 22, and 23.

Collapse

Ochsner KP, MacNeil MD, Lewis RM, Spangler ML. Economic selection index development for Beefmaster cattle II: General-purpose breeding objective. J Anim Sci 2018;95:1913-1920. [PMID: 28726989 DOI: 10.2527/jas.2016.1232] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Wijesena HR, Lents CA, Riethoven JJ, Trenhaile-Grannemann MD, Thorson JF, Keel BN, Miller PS, Spangler ML, Kachman SD, Ciobanu DC. GENOMICS SYMPOSIUM: Using genomic approaches to uncover sources of variation in age at puberty and reproductive longevity in sows1,2. J Anim Sci 2017. [DOI: 10.2527/jas.2016.1334] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open

Lee J, Kachman SD, Spangler ML. The impact of training strategies on the accuracy of genomic predictors in United States Red Angus cattle1. J Anim Sci 2017;95:3406-3414. [DOI: 10.2527/jas.2017.1604] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open

Yu H, Spangler ML, Lewis RM, Morota G. 189 Genomic relatedness strengthens genetic connectedness across management units. J Anim Sci 2017. [DOI: 10.2527/asasann.2017.189] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Snelling WM, Kachman SD, Bennett GL, Spangler ML, Kuehn LA, Thallman RM. 197 Functional SNP associated with birth weight in independent populations identified with a permutation step added to GBLUP-GWAS. J Anim Sci 2017. [DOI: 10.2527/asasann.2017.197] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Buckley BA, Speidel SE, Boldt RJ, Enns RM, Zeng X, Spangler ML, Lee J, Thomas MG. 195 Genome-wide association study of heifer pregnancy in Red Angus cattle. J Anim Sci 2017. [DOI: 10.2527/asasann.2017.195] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Ochsner KP, MacNeil MD, Lewis RM, Spangler ML. Economic selection index development for Beefmaster cattle I: Terminal breeding objective. J Anim Sci 2017;95:1063-1070. [PMID: 28380518 DOI: 10.2527/jas.2016.1231] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Ahlberg CM, Kuehn LA, Thallman RM, Kachman SD, Snelling WM, Spangler ML. Breed effects and genetic parameter estimates for calving difficulty and birth weight in a multibreed population. J Anim Sci 2017;94:1857-64. [PMID: 27285683 DOI: 10.2527/jas.2015-0161] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Taylor JF, Beever JE, Decker JE, Freetly HC, Garrick DJ, Hansen SL, Johnson KA, Kerley MS, Loy DD, Neibergs HL, Saatchi M, Schnabel RD, Seabury CM, Shike DW, Spangler ML, Weaber RL. 331 The genetic improvement of feed efficiency in beef cattle. J Anim Sci 2017. [DOI: 10.2527/asasmw.2017.331] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Lee J, Kachman SD, Spangler ML. The impact of training strategies on the accuracy of genomic predictors in United States Red Angus cattle. J Anim Sci 2017. [DOI: 10.2527/jas2017.1604] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Ochsner KP, MacNeil MD, Lewis RM, Spangler ML. Economic selection index development for Beefmaster cattle II: General-purpose breeding objective. J Anim Sci 2017. [DOI: 10.2527/jas2016.1232] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Ochsner KP, MacNeil MD, Lewis RM, Spangler ML. Economic selection index development for Beefmaster cattle I: Terminal breeding objective. J Anim Sci 2017. [DOI: 10.2527/jas2016.1231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Ochsner KP, Lewis RM, MacNeil MD, Spangler ML. 0390 Economic selection index coefficients for terminal traits in Beefmaster cattle. J Anim Sci 2016. [DOI: 10.2527/jam2016-0390] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Ghebrewold R, Spangler ML. 0319 A genome-wide association study for changes in dry matter intake due to temperature variation in an admixed beef cattle population. J Anim Sci 2016. [DOI: 10.2527/jam2016-0319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Ciobanu DC, Kachman SD, Olson S, Spangler ML, Trenhaile MD, Wijesena H, Miller PS, Riethoven JJ, Lents CA, Thorson JF, Massey R, Safranski TJ. 0691 Translational genomics for improving sow reproductive longevity. J Anim Sci 2016. [DOI: 10.2527/jam2016-0691] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Schweer KR, Kachman SD, Kuehn LA, Spangler ML. P5065 Comparison of SNP and haplotype models for genome-wide association studies for feed efficiency traits in crossbred beef cattle. J Anim Sci 2016. [DOI: 10.2527/jas2016.94supplement4147x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

He J, Wu XL, Bauck S, Xu JQ, Lee J, Morota G, Kachman SD, Spangler ML. P1028 Comparing 2 strategies for selecting low density SNPs for imputation-mediated, multiple-trait genomic prediction in a U.S. Holstein population. J Anim Sci 2016. [DOI: 10.2527/jas2016.94supplement428a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Torres-Vázquez JA, Spangler ML. Genetic parameters for docility, weaning weight, yearling weight, and intramuscular fat percentage in Hereford cattle. J Anim Sci 2016;94:21-7. [PMID: 26812308 DOI: 10.2527/jas.2015-9566] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open

Schiermiester LN, Thallman RM, Kuehn LA, Kachman SD, Spangler ML. Estimation of breed-specific heterosis effects for birth, weaning, and yearling weight in cattle. J Anim Sci 2015;93:46-52. [PMID: 25568356 DOI: 10.2527/jas.2014-8493] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Abstract

Heterosis, assumed proportional to expected breed heterozygosity, was calculated for 6834 individuals with birth, weaning and yearling weight records from Cycle VII and advanced generations of the U.S. Meat Animal Research Center (USMARC) Germplasm Evaluation (GPE) project. Breeds represented in these data included: Angus, Hereford, Red Angus, Charolais, Gelbvieh, Simmental, Limousin and Composite MARC III. Heterosis was further estimated by proportions of British × British (B × B), British × Continental (B × C) and Continental × Continental (C × C) crosses and by breed-specific combinations. Model 1 fitted fixed covariates for heterosis within biological types while Model 2 fitted random breed-specific combinations nested within the fixed biological type covariates. Direct heritability estimates (SE) for birth, weaning ,and yearling weight for Model 1 were 0.42 (0.04), 0.22 (0.03), and 0.39 (0.05), respectively. The direct heritability estimates (SE) of birth, weaning, and yearling weight for Model 2 were the same as Model 1, except yearling weight heritability was 0.38 (0.05). The B × B, B × C, and C × C heterosis estimates for birth weight were 0.47 (0.37), 0.75 (0.32), and 0.73 (0.54) kg, respectively. The B × B, B × C, and C × C heterosis estimates for weaning weight were 6.43 (1.80), 8.65 (1.54), and 5.86 (2.57) kg, respectively. Yearling weight estimates for B × B, B × C, and C × C heterosis were 17.59(3.06), 13.88 (2.63), and 9.12 (4.34) kg, respectively. Differences did exist among estimates of breed-specific heterosis for weaning and yearling weight, although the variance component associated with breed-specific heterosis was not significant. These results illustrate that there are differences in breed-specific heterosis and exploiting these differences can lead to varying levels of heterosis among mating plans.

Collapse

Boyd BM, Shackelford SD, Hales KE, Brown-Brandl TM, Bremer ML, Spangler ML, Wheeler TL, King DA, Erickson GE. Effects of shade and feeding zilpaterol hydrochloride to finishing steers on performance, carcass quality, heat stress, mobility, and body temperature1. J Anim Sci 2015;93:5801-11. [DOI: 10.2527/jas.2015-9613] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Lucot KL, Spangler ML, Trenhaile MD, Kachman SD, Ciobanu DC. Evaluation of reduced subsets of single nucleotide polymorphisms for the prediction of age at puberty in sows. Anim Genet 2015;46:403-9. [DOI: 10.1111/age.12310] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/15/2015] [Indexed: 11/30/2022]

Howard JT, Kachman SD, Nielsen MK, Mader TL, Spangler ML. The effect of myostatin genotype on body temperature during extreme temperature events1. J Anim Sci 2013;91:3051-8. [DOI: 10.2527/jas.2012-6180] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Tart JK, Johnson RK, Bundy JW, Ferdinand NN, McKnite AM, Wood JR, Miller PS, Rothschild MF, Spangler ML, Garrick DJ, Kachman SD, Ciobanu DC. Genome-wide prediction of age at puberty and reproductive longevity in sows. Anim Genet 2013;44:387-97. [PMID: 23437861 DOI: 10.1111/age.12028] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/06/2013] [Indexed: 11/27/2022]

Spangler ML, Robbins KR, Bertrand JK, Macneil M, Rekaya R. Ant colony optimization as a method for strategic genotype sampling. Anim Genet 2009;40:308-14. [PMID: 19220227 DOI: 10.1111/j.1365-2052.2008.01835.x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]

Spangler ML, Sapp RL, Bertrand JK, MacNeil MD, Rekaya R. Different methods of selecting animals for genotyping to maximize the amount of genetic information known in the population. J Anim Sci 2008;86:2471-9. [DOI: 10.2527/jas.2007-0492] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Spangler ML, Bertrand JK, Rekaya R. Combining genetic test information and correlated phenotypic records for breeding value estimation. J Anim Sci 2007;85:641-9. [PMID: 17085722 DOI: 10.2527/jas.2006-617] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Abstract

The use of marker assisted selection in the beef cattle industry to date has involved using traditional EPD in tandem with molecular test information. In the current study, a multiple-trait simulation was carried out to create a beef cattle data set using genetic parameter estimates from the literature to identify the best procedure for combining both sources of information and to assess the added benefit of the procedure. To reach these objectives, the following simulation/ analysis steps were implemented: (1) varying percentages (100, 5, or 0) of available records for the trait of interest, (2) varying percentages (100, 50, 25, or 0) of animals with molecular information, (3) scenarios where the favorable (F) or the unfavorable (U) allele was more frequent, and (4) analysis of the response due to selection over 5 generations. The data sets included 3 correlated traits in which 2 of them, birth weight and postweaning gain, had complete recording and the availability of records for the third trait (marbling score) varied. It was further assumed that molecular information was available for the third trait for a causative gene that explained 10% of the genetic variation. Estimates of Pearson correlations between true and predicted breeding values for marbling score declined as the amount of information declined, and instances in which the molecular information was recorded were always closer to the true values than in the case in which the molecular information was absent. When the U allele was more frequent, rank correlation estimates were increased among top sires, low accuracy sires, and high accuracy sires by approximately 24.9, 12.1, and 4.7% with limited marbling score records and complete genotyping compared with limited marbling score records and no genotyping. Similar results were seen when the F allele was more frequent. When there was a complete absence of recording for the trait of interest, the same trends in correlations were observed and were lower than when the trait of interest was recorded. Jointly considering molecular and phenotypic information showed a greater long-term response compared with tandem selection, showing that discrimination of candidates for selection based solely on molecular information is not optimal.

Collapse

Spangler ML, Sapp RL, Rekaya R, Bertrand JK. Success at first insemination in Australian Angus cattle: Analysis of uncertain binary responses1. J Anim Sci 2006;84:20-4. [PMID: 16361487 DOI: 10.2527/2006.84120x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open

Wilder JA, Dyreson EG, O'Neill RJ, Spangler ML, Gupta R, Wilder AS, Hollocher H. Contrasting modes of natural selection acting on pigmentation genes in the Drosophila dunni subgroup. J Exp Zool B Mol Dev Evol 2005;302:469-82. [PMID: 15384167 DOI: 10.1002/jez.b.21012] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]