Elevated atmospheric humidity shapes the carbon cycle of a silver birch forest ecosystem: A FAHM study

Processes determining the carbon (C) balance of a forest ecosystem are influenced by a number of climatic and environmental factors. In Northern Europe, a rise in atmospheric humidity and precipitation is predicted. The study aims to ascertain the effect of elevated atmospheric humidity on the components of the C budget and on the C-sequestration capacity of a young birch forest. Biomass production, soil respiration, and other C fluxes were measured in young silver birch (Betula pendula Roth) stands growing on the Free Air Humidity Manipulation (FAHM) experimental site, located in South-East Estonia. The C input fluxes: C sequestration in trees and understory, litter input into soil, and methane oxidation, as well as C output fluxes: soil heterotrophic respiration and C leaching were estimated. Humidified birch stands stored C from the atmosphere, but control stands can be considered as C neutral. Two years of elevated air humidity increased C sequestration in the understory but decreased it in trees. Humidification treatment increased remarkably the C input to the soil. The main reason for such an increase was the higher root litter input into the soil, brought about by the more than two-fold increase of belowground biomass production of the understory in the humidification treatment. Elevated atmospheric humidity increased C sequestration in young silver birch stands, mitigating increasing CO₂ concentration in the atmosphere. However, the effect of elevated atmospheric humidity is expected to decrease over time, as plants and soil organisms acclimate, and new communities emerge.

Somatic CALR mutations in myeloproliferative neoplasms with nonmutated JAK2

BACKGROUND

Somatic mutations in the Janus kinase 2 gene (JAK2) occur in many myeloproliferative neoplasms, but the molecular pathogenesis of myeloproliferative neoplasms with nonmutated JAK2 is obscure, and the diagnosis of these neoplasms remains a challenge.

METHODS

We performed exome sequencing of samples obtained from 151 patients with myeloproliferative neoplasms. The mutation status of the gene encoding calreticulin (CALR) was assessed in an additional 1345 hematologic cancers, 1517 other cancers, and 550 controls. We established phylogenetic trees using hematopoietic colonies. We assessed calreticulin subcellular localization using immunofluorescence and flow cytometry.

RESULTS

Exome sequencing identified 1498 mutations in 151 patients, with medians of 6.5, 6.5, and 13.0 mutations per patient in samples of polycythemia vera, essential thrombocythemia, and myelofibrosis, respectively. Somatic CALR mutations were found in 70 to 84% of samples of myeloproliferative neoplasms with nonmutated JAK2, in 8% of myelodysplasia samples, in occasional samples of other myeloid cancers, and in none of the other cancers. A total of 148 CALR mutations were identified with 19 distinct variants. Mutations were located in exon 9 and generated a +1 base-pair frameshift, which would result in a mutant protein with a novel C-terminal. Mutant calreticulin was observed in the endoplasmic reticulum without increased cell-surface or Golgi accumulation. Patients with myeloproliferative neoplasms carrying CALR mutations presented with higher platelet counts and lower hemoglobin levels than patients with mutated JAK2. Mutation of CALR was detected in hematopoietic stem and progenitor cells. Clonal analyses showed CALR mutations in the earliest phylogenetic node, a finding consistent with its role as an initiating mutation in some patients.

CONCLUSIONS

Somatic mutations in the endoplasmic reticulum chaperone CALR were found in a majority of patients with myeloproliferative neoplasms with nonmutated JAK2. (Funded by the Kay Kendall Leukaemia Fund and others.).

Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13

Since the sequencing of the first two chromosomes of the malaria parasite, Plasmodium falciparum, there has been a concerted effort to sequence and assemble the entire genome of this organism. Here we report the sequence of chromosomes 1, 3-9 and 13 of P. falciparum clone 3D7--these chromosomes account for approximately 55% of the total genome. We describe the methods used to map, sequence and annotate these chromosomes. By comparing our assemblies with the optical map, we indicate the completeness of the resulting sequence. During annotation, we assign Gene Ontology terms to the predicted gene products, and observe clustering of some malaria-specific terms to specific chromosomes. We identify a highly conserved sequence element found in the intergenic region of internal var genes that is not associated with their telomeric counterparts.