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Fourichon C, Graham DA, Nielen M, Van Schaik G, More SJ, Madouasse A, van Roon AM, Frossling J, Gethmann J, Mercat M, Agren E, Sauter-Louis C, Gunn G, Eze J, Humphry R, Henry MK, Guelbenzu M, Santman-Berends IMG. A framework for assessing confidence in freedom from infection in animal disease control programmes. REV SCI TECH OIE 2023; 42:210-217. [PMID: 37232303 DOI: 10.20506/rst.42.3364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
In the Surveillance Tool for Outcome-based Comparison of FREEdom from infection (STOC free) project (https://www.stocfree.eu), a data collection tool was constructed to facilitate standardised collection of input data, and a model was developed to allow a standardised and harmonised comparison of the outputs of different control programmes (CPs) for cattle diseases. The STOC free model can be used to evaluate the probability of freedom from infection for herds in CPs and to determine whether these CPs comply with the European Union's pre-defined output-based standards. Bovine viral diarrhoea virus (BVDV) was chosen as the case disease for this project because of the diversity in CPs in the six participating countries. Detailed BVDV CP and risk factor information was collected using the data collection tool. For inclusion of the data in the STOC free model, key aspects and default values were quantified. A Bayesian hidden Markov model was deemed appropriate, and a model was developed for BVDV CPs. The model was tested and validated using real BVDV CP data from partner countries, and corresponding computer code was made publicly available. The STOC free model focuses on herd-level data, although that animal-level data can be included after aggregation to herd level. The STOC free model is applicable to diseases that are endemic, given that it needs the presence of some infection to estimate parameters and enable convergence. In countries where infection-free status has been achieved, a scenario tree model could be a better suited tool. Further work is recommended to generalise the STOC free model to other diseases.
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Hodnik JJ, Acinger-Rogić Ž, Alishani M, Autio T, Balseiro A, Berezowski J, Carmo LP, Chaligiannis I, Conrady B, Costa L, Cvetkovikj I, Davidov I, Dispas M, Djadjovski I, Duarte EL, Faverjon C, Fourichon C, Frössling J, Gerilovych A, Gethmann J, Gomes J, Graham D, Guelbenzu M, Gunn GJ, Henry MK, Hopp P, Houe H, Irimia E, Ježek J, Juste RA, Kalaitzakis E, Kaler J, Kaplan S, Kostoulas P, Kovalenko K, Kneževič N, Knific T, Koleci X, Madouasse A, Malakauskas A, Mandelik R, Meletis E, Mincu M, Mõtus K, Muñoz-Gómez V, Niculae M, Nikitović J, Ocepek M, Tangen-Opsal M, Ózsvári L, Papadopoulos D, Papadopoulos T, Pelkonen S, Polak MP, Pozzato N, Rapaliuté E, Ribbens S, Niza-Ribeiro J, Roch FF, Rosenbaum Nielsen L, Saez JL, Nielsen SS, van Schaik G, Schwan E, Sekovska B, Starič J, Strain S, Šatran P, Šerić-Haračić S, Tamminen LM, Thulke HH, Toplak I, Tuunainen E, Verner S, Vilček Š, Yildiz R, Santman-Berends IMGA. Corrigendum: Overview of Cattle Diseases Listed Under Category C, D or E in the Animal Health Law for Which Control Programmes Are in Place Within Europe. Front Vet Sci 2022; 9:902559. [PMID: 35529840 PMCID: PMC9070405 DOI: 10.3389/fvets.2022.902559] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Accepted: 03/23/2022] [Indexed: 11/24/2022] Open
Affiliation(s)
- Jaka Jakob Hodnik
- Clinic for Reproduction and Large Animals - Section for Ruminants, Veterinary Faculty, University of Ljubljana, Ljubljana, Slovenia
| | - Žaklin Acinger-Rogić
- Veterinary and Food Safety Directorate, Ministry of Agriculture, Zagreb, Croatia
| | - Mentor Alishani
- Department of Veterinary Medicine, Faculty of Agriculture and Veterinary, University of Prishtina "Hasan Prishtina", Prishtina, Albania
| | - Tiina Autio
- Finnish Food Authority, Veterinary Bacteriology and Pathology Unit, Kuopio, Finland
| | - Ana Balseiro
- Animal Health Department, University of León, León, Spain.,Animal Health Department, Instituto de Ganadería de Montaña Consejo Superior de Investigaciones Científicas-University of León, León, Spain
| | - John Berezowski
- Veterinary Public Health Institute, Vetsuisse, University of Bern, Bern, Switzerland
| | - Luís Pedro Carmo
- Veterinary Public Health Institute, Vetsuisse, University of Bern, Bern, Switzerland
| | - Ilias Chaligiannis
- School of Veterinary Medicine, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Beate Conrady
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.,Complexity Science Hub Vienna, Vienna, Austria
| | - Lina Costa
- Department of Agrarian and Veterinary Sciences, Agrarian School of Elvas, Polytechnic Institute of Portalegre, Portalegre, Portugal
| | - Iskra Cvetkovikj
- Faculty of Veterinary Medicine in Skopje, Ss Cyril and Methodius University in Skopje, Skopje, Macedonia
| | - Ivana Davidov
- Faculty of Agriculture, University of Novi Sad, Novi Sad, Serbia
| | | | - Igor Djadjovski
- Faculty of Veterinary Medicine in Skopje, Ss Cyril and Methodius University in Skopje, Skopje, Macedonia
| | - Elsa Leclerc Duarte
- Departamento de Medicina Veterinária, Mediterranean Institute for Agriculture, Environment and Development, Universidade de Évora, Évora, Portugal
| | | | | | - Jenny Frössling
- Department of Disease Control and Epidemiology, National Veterinary Institute (SVA), Uppsala, Sweden.,Department of Animal Environment and Health, Swedish University of Agricultural Sciences, Skara, Sweden
| | - Anton Gerilovych
- National Scientific Centre, Institute for Experimental and Clinical Veterinary Medicine, Kharkiv, Ukraine
| | - Jörn Gethmann
- Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Epidemiology, Greifswald, Germany
| | - Jacinto Gomes
- Animal Health and Production Unit, National Institute for Agrarian and Veterinary Research, Oeiras, Portugal
| | - David Graham
- Animal Health Ireland, Carrick on Shannon, Ireland
| | | | - George J Gunn
- Epidemiology Research Unit, Department of Veterinary and Animal Science, Northern Faculty, Scotland's Rural College, Inverness, United Kingdom
| | - Madeleine K Henry
- Epidemiology Research Unit, Department of Veterinary and Animal Science, Northern Faculty, Scotland's Rural College, Inverness, United Kingdom
| | - Petter Hopp
- Section of Epidemiology, Norwegian Veterinary Institute (NVI), Oslo, Norway
| | - Hans Houe
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
| | - Elena Irimia
- Research and Development Institute for Bovine Balotesti, Balotesti, Romania
| | - Jožica Ježek
- Clinic for Reproduction and Large Animals - Section for Ruminants, Veterinary Faculty, University of Ljubljana, Ljubljana, Slovenia
| | - Ramon A Juste
- Department of Animal Health, NEIKER-Basque Institute for Agricultural Research and Development, Basque Research and Technology Alliance, Derio, Spain
| | - Emmanouil Kalaitzakis
- Clinic of Farm Animals, Veterinary Faculty, Aristotle University Thessaloniki, Thessaloniki, Greece
| | - Jasmeet Kaler
- School of Veterinary Medicine and Science, University of Nottingham, Nottingham, United Kingdom
| | - Selcuk Kaplan
- Department of Genetics, Faculty of Veterinary Medicine, Tekirdag Namik Kemal University, Tekirdag, Turkey
| | - Polychronis Kostoulas
- Laboratory of Epidemiology, Faculty of Public and One (Integrated) Health, School of Health Sciences, University of Thessaly, Karditsa, Greece
| | - Kaspars Kovalenko
- Faculty of Veterinary Medicine, Latvia University of Lifesciences and Technologies, Jelgava, Latvia
| | - Nada Kneževič
- Podravka Food Industry, Research and Development, Koprivnica, Croatia
| | - Tanja Knific
- Veterinary Faculty, Institute of Food Safety, Feed and Environment, University of Ljubljana, Ljubljana, Slovenia
| | - Xhelil Koleci
- Department of Veterinary Public Health, Faculty of Veterinary Medicine, Agricultural University of Tirana, Tirana, Albania
| | | | - Alvydas Malakauskas
- Department of Veterinary Pathobiology, Lithuanian University of Health Sciences, Veterinary Academy, Kaunas, Lithuania
| | - Rene Mandelik
- Department of Epizootiology, Parasitology and Protection of One Health, University of Veterinary Medicine and Pharmacy, Kosice, Slovakia
| | - Eleftherios Meletis
- Laboratory of Epidemiology, Faculty of Public and One (Integrated) Health, School of Health Sciences, University of Thessaly, Karditsa, Greece
| | - Madalina Mincu
- Research and Development Institute for Bovine Balotesti, Balotesti, Romania
| | - Kerli Mõtus
- Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Tartu, Estonia
| | - Violeta Muñoz-Gómez
- Section of Epidemiology, Vetsuisse Faculty, University of Zürich, Zurich, Switzerland
| | - Mihaela Niculae
- Faculty of Veterinary Medicine, University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca, Cluj-Napoca, Romania
| | - Jelena Nikitović
- Institute for Genetic Resources, University of Banja Luka, Banja Luka, Bosnia and Herzegovina
| | - Matjaž Ocepek
- Veterinary Faculty, National Veterinary Institute, University of Ljubljana, Ljubljana, Slovenia
| | | | - László Ózsvári
- Department of Veterinary Forensics and Economics, University of Veterinary Medicine Budapest, Budapest, Hungary
| | - Dimitrios Papadopoulos
- Department of Microbiology, Faculty of Veterinary Medicine, Aristoteles University of Thessaloniki, Thessaloniki, Greece
| | - Theofilos Papadopoulos
- Department of Microbiology, Faculty of Veterinary Medicine, Aristoteles University of Thessaloniki, Thessaloniki, Greece
| | - Sinikka Pelkonen
- Finnish Food Authority, Veterinary Bacteriology and Pathology Unit, Kuopio, Finland
| | | | - Nicola Pozzato
- Laboratorio di Medicina Forense Veterinaria, Struttura Complessa Territoriale 1 - Verona e Vicenza, Istituto Zooprofilattico Sperimentale Delle Venezie, Vicenza, Italy
| | - Eglé Rapaliuté
- Department of Veterinary Pathobiology, Lithuanian University of Health Sciences, Veterinary Academy, Kaunas, Lithuania
| | | | - João Niza-Ribeiro
- Department of Population Studies, Institute of Biomedical Sciences Abel Salazar, University of Porto, Porto, Portugal
| | - Franz-Ferdinand Roch
- Unit of Food Microbiology, Institute for Food Safety, Food Technology and Veterinary Public Health, University of Veterinary Medicine Vienna, Vienna, Austria
| | - Liza Rosenbaum Nielsen
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
| | - Jose Luis Saez
- Ministry of Agriculture, Fisheries and Food, Madrid, Spain
| | - Søren Saxmose Nielsen
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
| | - Gerdien van Schaik
- Department of Population Health Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, Netherlands.,Royal GD, Deventer, Netherlands
| | | | - Blagica Sekovska
- Faculty of Veterinary Medicine in Skopje, Ss Cyril and Methodius University in Skopje, Skopje, Macedonia
| | - Jože Starič
- Clinic for Reproduction and Large Animals - Section for Ruminants, Veterinary Faculty, University of Ljubljana, Ljubljana, Slovenia
| | - Sam Strain
- Animal Health and Welfare Northern Ireland, Dungannon, United Kingdom
| | - Petr Šatran
- State Veterinary Administration, Prague, Czechia
| | - Sabina Šerić-Haračić
- Animal Health Economics Department, Veterinary Faculty of the University of Sarajevo, Sarajevo, Bosnia and Herzegovina
| | | | - Hans-Hermann Thulke
- Department of Ecological Modelling, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany
| | - Ivan Toplak
- Department of Virology, Veterinary Faculty, Institute of Microbiology and Parasitology, University of Ljubljana, Ljubljana, Slovenia
| | | | - Sharon Verner
- Animal Health and Welfare Northern Ireland, Dungannon, United Kingdom
| | - Štefan Vilček
- Department of Epizootiology, Parasitology and Protection of One Health, University of Veterinary Medicine and Pharmacy, Kosice, Slovakia
| | - Ramazan Yildiz
- Department of Internal Medicine, Faculty of Veterinary Medicine, Burdur Mehmet Akif Ersoy University, Burdur, Turkey
| | - Inge M G A Santman-Berends
- Department of Population Health Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, Netherlands.,Royal GD, Deventer, Netherlands
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3
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Fitzgerald SF, Lupolova N, Shaaban S, Dallman TJ, Greig D, Allison L, Tongue SC, Evans J, Henry MK, McNeilly TN, Bono JL, Gally DL. Genome structural variation in Escherichia coli O157:H7. Microb Genom 2021; 7. [PMID: 34751643 PMCID: PMC8743559 DOI: 10.1099/mgen.0.000682] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The human zoonotic pathogen Escherichia coli O157:H7 is defined by its extensive prophage repertoire including those that encode Shiga toxin, the factor responsible for inducing life-threatening pathology in humans. As well as introducing genes that can contribute to the virulence of a strain, prophage can enable the generation of large-chromosomal rearrangements (LCRs) by homologous recombination. This work examines the types and frequencies of LCRs across the major lineages of the O157:H7 serotype. We demonstrate that LCRs are a major source of genomic variation across all lineages of E. coli O157:H7 and by using both optical mapping and Oxford Nanopore long-read sequencing prove that LCRs are generated in laboratory cultures started from a single colony and that these variants can be recovered from colonized cattle. LCRs are biased towards the terminus region of the genome and are bounded by specific prophages that share large regions of sequence homology associated with the recombinational activity. RNA transcriptional profiling and phenotyping of specific structural variants indicated that important virulence phenotypes such as Shiga-toxin production, type-3 secretion and motility can be affected by LCRs. In summary, E. coli O157:H7 has acquired multiple prophage regions over time that act to continually produce structural variants of the genome. These findings raise important questions about the significance of this prophage-mediated genome contingency to enhance adaptability between environments.
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Affiliation(s)
- Stephen F Fitzgerald
- Division of Infection and Immunity, The Roslin Institute and R(D)SVS, The University of Edinburgh, Easter Bush, Midlothian, EH25 9RG, UK
| | - Nadejda Lupolova
- Division of Infection and Immunity, The Roslin Institute and R(D)SVS, The University of Edinburgh, Easter Bush, Midlothian, EH25 9RG, UK
| | - Sharif Shaaban
- Division of Infection and Immunity, The Roslin Institute and R(D)SVS, The University of Edinburgh, Easter Bush, Midlothian, EH25 9RG, UK
| | - Timothy J Dallman
- Gastrointestinal Bacterial Reference Unit, 61 Colindale Avenue, Public Health England, NW9 5EQ London, UK
| | - David Greig
- Gastrointestinal Bacterial Reference Unit, 61 Colindale Avenue, Public Health England, NW9 5EQ London, UK
| | - Lesley Allison
- Scottish E. coli O157/VTEC Reference Laboratory, Department of Laboratory Medicine, Royal Infirmary of Edinburgh, 51 Little France Crescent, Edinburgh EH16 4SA, UK
| | - Sue C Tongue
- Epidemiology Research Unit (Inverness), Department of Veterinary and Animal Science, Northern Faculty, Scotland's Rural College (SRUC), Scotland, IV2 5NA, UK
| | - Judith Evans
- Epidemiology Research Unit (Inverness), Department of Veterinary and Animal Science, Northern Faculty, Scotland's Rural College (SRUC), Scotland, IV2 5NA, UK
| | - Madeleine K Henry
- Epidemiology Research Unit (Inverness), Department of Veterinary and Animal Science, Northern Faculty, Scotland's Rural College (SRUC), Scotland, IV2 5NA, UK
| | - Tom N McNeilly
- Moredun Research Institute, Pentlands Science Park, Bush Loan, Penicuik, EH26 OPZ, UK
| | - James L Bono
- United States Department of Agriculture, Agricultural Research Service, US Meat Animal Research Center, Clay Center, Nebraska, USA
| | - David L Gally
- Division of Infection and Immunity, The Roslin Institute and R(D)SVS, The University of Edinburgh, Easter Bush, Midlothian, EH25 9RG, UK
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4
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Hodnik JJ, Acinger-Rogić Ž, Alishani M, Autio T, Balseiro A, Berezowski J, Carmo LP, Chaligiannis I, Conrady B, Costa L, Cvetkovikj I, Davidov I, Dispas M, Djadjovski I, Duarte EL, Faverjon C, Fourichon C, Frössling J, Gerilovych A, Gethmann J, Gomes J, Graham D, Guelbenzu M, Gunn GJ, Henry MK, Hopp P, Houe H, Irimia E, Ježek J, Juste RA, Kalaitzakis E, Kaler J, Kaplan S, Kostoulas P, Kovalenko K, Kneževič N, Knific T, Koleci X, Madouasse A, Malakauskas A, Mandelik R, Meletis E, Mincu M, Mõtus K, Muñoz-Gómez V, Niculae M, Nikitović J, Ocepek M, Tangen-Opsal M, Ózsvári L, Papadopoulos D, Papadopoulos T, Pelkonen S, Polak MP, Pozzato N, Rapaliuté E, Ribbens S, Niza-Ribeiro J, Roch FF, Rosenbaum Nielsen L, Saez JL, Nielsen SS, van Schaik G, Schwan E, Sekovska B, Starič J, Strain S, Šatran P, Šerić-Haračić S, Tamminen LM, Thulke HH, Toplak I, Tuunainen E, Verner S, Vilček Š, Yildiz R, Santman-Berends IMGA. Overview of Cattle Diseases Listed Under Category C, D or E in the Animal Health Law for Which Control Programmes Are in Place Within Europe. Front Vet Sci 2021; 8:688078. [PMID: 34395571 PMCID: PMC8361752 DOI: 10.3389/fvets.2021.688078] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Accepted: 07/01/2021] [Indexed: 12/20/2022] Open
Abstract
The COST action “Standardising output-based surveillance to control non-regulated diseases of cattle in the European Union (SOUND control),” aims to harmonise the results of surveillance and control programmes (CPs) for selected cattle diseases to facilitate safe trade and improve overall control of cattle infectious diseases. In this paper we aimed to provide an overview on the diversity of control for these diseases in Europe. A selected cattle disease was defined as an infectious disease of cattle with no or limited control at EU level, which is not included in the European Union Animal health law Categories A or B under Commission Implementing Regulation (EU) 2020/2002. A CP was defined as surveillance and/or intervention strategies designed to lower the incidence, prevalence, mortality or prove freedom from a specific disease in a region or country. Passive surveillance, and active surveillance of breeding bulls under Council Directive 88/407/EEC were not considered as CPs. A questionnaire was designed to obtain country-specific information about CPs for each disease. Animal health experts from 33 European countries completed the questionnaire. Overall, there are 23 diseases for which a CP exists in one or more of the countries studied. The diseases for which CPs exist in the highest number of countries are enzootic bovine leukosis, bluetongue, infectious bovine rhinotracheitis, bovine viral diarrhoea and anthrax (CPs reported by between 16 and 31 countries). Every participating country has on average, 6 CPs (min–max: 1–13) in place. Most programmes are implemented at a national level (86%) and are applied to both dairy and non-dairy cattle (75%). Approximately one-third of the CPs are voluntary, and the funding structure is divided between government and private resources. Countries that have eradicated diseases like enzootic bovine leukosis, bluetongue, infectious bovine rhinotracheitis and bovine viral diarrhoea have implemented CPs for other diseases to further improve the health status of cattle in their country. The control of the selected cattle diseases is very heterogenous in Europe. Therefore, the standardising of the outputs of these programmes to enable comparison represents a challenge.
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Affiliation(s)
- Jaka Jakob Hodnik
- Clinic for Reproduction and Large Animals - Section for Ruminants, Veterinary Faculty, University of Ljubljana, Ljubljana, Slovenia
| | - Žaklin Acinger-Rogić
- Veterinary and Food Safety Directorate, Ministry of Agriculture, Zagreb, Croatia
| | - Mentor Alishani
- Department of Veterinary Medicine, Faculty of Agriculture and Veterinary, University of Prishtina "Hasan Prishtina", Prishtina, Albania
| | - Tiina Autio
- Finnish Food Authority, Veterinary Bacteriology and Pathology Unit, Kuopio, Finland
| | - Ana Balseiro
- Animal Health Department, University of León, León, Spain.,Animal Health Department, Instituto de Ganadería de Montaña Consejo Superior de Investigaciones Científicas-University of León, León, Spain
| | - John Berezowski
- Veterinary Public Health Institute, Vetsuisse, University of Bern, Bern, Switzerland
| | - Luís Pedro Carmo
- Veterinary Public Health Institute, Vetsuisse, University of Bern, Bern, Switzerland
| | - Ilias Chaligiannis
- School of Veterinary Medicine, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Beate Conrady
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.,Complexity Science Hub Vienna, Vienna, Austria
| | - Lina Costa
- Department of Agrarian and Veterinary Sciences, Agrarian School of Elvas, Polytechnic Institute of Portalegre, Portalegre, Portugal
| | - Iskra Cvetkovikj
- Faculty of Veterinary Medicine in Skopje, Ss Cyril and Methodius University in Skopje, Skopje, Macedonia
| | - Ivana Davidov
- Faculty of Agriculture, University of Novi Sad, Novi Sad, Serbia
| | | | - Igor Djadjovski
- Faculty of Veterinary Medicine in Skopje, Ss Cyril and Methodius University in Skopje, Skopje, Macedonia
| | - Elsa Leclerc Duarte
- Departamento de Medicina Veterinária, Mediterranean Institute for Agriculture, Environment and Development, Universidade de Évora, Évora, Portugal
| | | | | | - Jenny Frössling
- Department of Disease Control and Epidemiology, National Veterinary Institute (SVA), Uppsala, Sweden.,Department of Animal Environment and Health, Swedish University of Agricultural Sciences, Skara, Sweden
| | - Anton Gerilovych
- National Scientific Centre, Institute for Experimental and Clinical Veterinary Medicine, Kharkiv, Ukraine
| | - Jörn Gethmann
- Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Epidemiology, Greifswald, Germany
| | - Jacinto Gomes
- Animal Health and Production Unit, National Institute for Agrarian and Veterinary Research, Oeiras, Portugal
| | - David Graham
- Animal Health Ireland, Carrick on Shannon, Ireland
| | | | - George J Gunn
- Epidemiology Research Unit, Department of Veterinary and Animal Science, Northern Faculty, Scotland's Rural College, Inverness, United Kingdom
| | - Madeleine K Henry
- Epidemiology Research Unit, Department of Veterinary and Animal Science, Northern Faculty, Scotland's Rural College, Inverness, United Kingdom
| | - Petter Hopp
- Section of Epidemiology, Norwegian Veterinary Institute (NVI), Oslo, Norway
| | - Hans Houe
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
| | - Elena Irimia
- Research and Development Institute for Bovine Balotesti, Balotesti, Romania
| | - Jožica Ježek
- Clinic for Reproduction and Large Animals - Section for Ruminants, Veterinary Faculty, University of Ljubljana, Ljubljana, Slovenia
| | - Ramon A Juste
- Department of Animal Health, NEIKER-Basque Institute for Agricultural Research and Development, Basque Research and Technology Alliance, Derio, Spain
| | - Emmanouil Kalaitzakis
- Clinic of Farm Animals, Veterinary Faculty, Aristotle University Thessaloniki, Thessaloniki, Greece
| | - Jasmeet Kaler
- School of Veterinary Medicine and Science, University of Nottingham, Nottingham, United Kingdom
| | - Selcuk Kaplan
- Department of Genetics, Faculty of Veterinary Medicine, Tekirdag Namik Kemal University, Tekirdag, Turkey
| | - Polychronis Kostoulas
- Laboratory of Epidemiology, Faculty of Public and One (Integrated) Health, School of Health Sciences, University of Thessaly, Karditsa, Greece
| | - Kaspars Kovalenko
- Faculty of Veterinary Medicine, Latvia University of Lifesciences and Technologies, Jelgava, Latvia
| | - Nada Kneževič
- Podravka Food Industry, Research and Development, Koprivnica, Croatia
| | - Tanja Knific
- Veterinary Faculty, Institute of Food Safety, Feed and Environment, University of Ljubljana, Ljubljana, Slovenia
| | - Xhelil Koleci
- Department of Veterinary Public Health, Faculty of Veterinary Medicine, Agricultural University of Tirana, Tirana, Albania
| | | | - Alvydas Malakauskas
- Department of Veterinary Pathobiology, Lithuanian University of Health Sciences, Veterinary Academy, Kaunas, Lithuania
| | - Rene Mandelik
- Department of Epizootiology, Parasitology and Protection of One Health, University of Veterinary Medicine and Pharmacy, Kosice, Slovakia
| | - Eleftherios Meletis
- Laboratory of Epidemiology, Faculty of Public and One (Integrated) Health, School of Health Sciences, University of Thessaly, Karditsa, Greece
| | - Madalina Mincu
- Research and Development Institute for Bovine Balotesti, Balotesti, Romania
| | - Kerli Mõtus
- Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Tartu, Estonia
| | - Violeta Muñoz-Gómez
- Section of Epidemiology, Vetsuisse Faculty, University of Zürich, Zürich, Switzerland
| | - Mihaela Niculae
- Faculty of Veterinary Medicine, University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca, Cluj-Napoca, Romania
| | - Jelena Nikitović
- Institute for Genetic Resources, University of Banja Luka, Banja Luka, Bosnia and Herzegovina
| | - Matjaž Ocepek
- Veterinary Faculty, National Veterinary Institute, University of Ljubljana, Ljubljana, Slovenia
| | | | - László Ózsvári
- Department of Veterinary Forensics and Economics, University of Veterinary Medicine Budapest, Budapest, Hungary
| | - Dimitrios Papadopoulos
- Department of Microbiology, Faculty of Veterinary Medicine, Aristoteles University of Thessaloniki, Thessaloniki, Greece
| | - Theofilos Papadopoulos
- Department of Microbiology, Faculty of Veterinary Medicine, Aristoteles University of Thessaloniki, Thessaloniki, Greece
| | - Sinikka Pelkonen
- Finnish Food Authority, Veterinary Bacteriology and Pathology Unit, Kuopio, Finland
| | | | - Nicola Pozzato
- Laboratorio di Medicina Forense Veterinaria, Struttura Complessa Territoriale 1 - Verona e Vicenza, Istituto Zooprofilattico Sperimentale Delle Venezie, Vicenza, Italy
| | - Eglé Rapaliuté
- Department of Veterinary Pathobiology, Lithuanian University of Health Sciences, Veterinary Academy, Kaunas, Lithuania
| | | | - João Niza-Ribeiro
- Department of Population Studies, Institute of Biomedical Sciences Abel Salazar, University of Porto, Porto, Portugal
| | - Franz-Ferdinand Roch
- Unit of Food Microbiology, Institute for Food Safety, Food Technology and Veterinary Public Health, University of Veterinary Medicine Vienna, Vienna, Austria
| | - Liza Rosenbaum Nielsen
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
| | - Jose Luis Saez
- Ministry of Agriculture, Fisheries and Food, Madrid, Spain
| | - Søren Saxmose Nielsen
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
| | - Gerdien van Schaik
- Department of Population Health Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, Netherlands.,Royal GD, Deventer, Netherlands
| | | | - Blagica Sekovska
- Faculty of Veterinary Medicine in Skopje, Ss Cyril and Methodius University in Skopje, Skopje, Macedonia
| | - Jože Starič
- Clinic for Reproduction and Large Animals - Section for Ruminants, Veterinary Faculty, University of Ljubljana, Ljubljana, Slovenia
| | - Sam Strain
- Animal Health and Welfare Northern Ireland, Dungannon, United Kingdom
| | - Petr Šatran
- State Veterinary Administration, Prague, Czechia
| | - Sabina Šerić-Haračić
- Animal Health Economics Department, Veterinary Faculty of the University of Sarajevo, Sarajevo, Bosnia and Herzegovina
| | | | - Hans-Hermann Thulke
- Department of Ecological Modelling, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany
| | - Ivan Toplak
- Department of Virology, Veterinary Faculty, Institute of Microbiology and Parasitology, University of Ljubljana, Ljubljana, Slovenia
| | | | - Sharon Verner
- Animal Health and Welfare Northern Ireland, Dungannon, United Kingdom
| | - Štefan Vilček
- Department of Epizootiology, Parasitology and Protection of One Health, University of Veterinary Medicine and Pharmacy, Kosice, Slovakia
| | - Ramazan Yildiz
- Department of Internal Medicine, Faculty of Veterinary Medicine, Burdur Mehmet Akif Ersoy University, Burdur, Turkey
| | - Inge M G A Santman-Berends
- Department of Population Health Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, Netherlands.,Royal GD, Deventer, Netherlands
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5
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Rapaliute E, van Roon A, van Schaik G, Santman-Berends I, Koleci X, Mincu M, Gethmann J, Conrady B, Knific T, Hodnik JJ, Berezowski J, Carmo LP, Madouasse A, Tarpai A, Gerilovych A, Malakauskas A, Sekovska B, Fourichon C, Kalaitzakis E, Roch FF, Houe H, Dudek K, Mõtus K, Ózsvári L, Costa L, Guelbenzu-Gonzalo M, Henry MK, Alishani M, Pozzato N, Hopp P, Juste R, Strain S, Mandelik R, Vilček Š, Autio T, Tamminen LM, Faverjon C. Existence and Quality of Data on Control Programs for EU Non-regulated Cattle Diseases: Consequences for Estimation and Comparison of the Probability of Freedom From Infection. Front Vet Sci 2021; 8:689375. [PMID: 34350229 PMCID: PMC8328145 DOI: 10.3389/fvets.2021.689375] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Accepted: 06/09/2021] [Indexed: 11/13/2022] Open
Abstract
Some European countries have successfully implemented country-specific control programs (CPs) for infectious cattle diseases that are not regulated or are regulated only to a limited extent at the European Union (EU) level. Examples of such diseases include bovine viral diarrhea (BVD), infectious bovine rhinotracheitis (IBR), and Johne's disease (JD). The CPs vary between countries in the design and quality of collected data as well as methods used to detect infection and estimate prevalence or probability of freedom from infection. Differences in disease status between countries and non-standardized approaches to assess freedom from infection pose a risk for countries with CPs for non-regulated diseases as infected animals may influence the progress of the disease control or eradication program. The implementation of output-based standards allows estimation and comparison of the probability of freedom for non-regulated cattle diseases in European countries. The aim of the current study was to assess the existence and quality of data that could be used for estimating freedom from infection in European countries. The online data collection tool was sent to 32 countries participating in the SOUND control COST Action and was completed by 24 countries. Data on cattle demographics and data from CPs of IBR and BVD exist in more than 50% of the response countries. However, data describing risk factors and CP of JD was reported as existing in <25% of the countries. The overall quality of data in the sections on demographics and CPs of IBR and BVD were evaluated as "good", but risk factors and JD data were mostly evaluated as "fair." Data quality was considered less good mainly due to two quality criteria: accessibility and accuracy. The results of this study show that the quantity and quality of data about cattle populations and CPs are relatively similar in many surveyed countries. The outcome of this work provides an overview of the current situation in the European countries regarding data on EU non-regulated cattle diseases and will further assist in the development and implementation of output-based standards.
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Affiliation(s)
- Egle Rapaliute
- Department of Veterinary Pathobiology, Faculty of Veterinary Medicine, Veterinary Academy, Lithuanian University of Health Sciences, Kaunas, Lithuania
| | - Annika van Roon
- Department of Population Health Sciences, Unit Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University, Utrecht, Netherlands
| | - Gerdien van Schaik
- Department of Population Health Sciences, Unit Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University, Utrecht, Netherlands.,Department of Epidemiology, Royal GD, Deventer, Netherlands
| | - Inge Santman-Berends
- Department of Population Health Sciences, Unit Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University, Utrecht, Netherlands.,Department of Epidemiology, Royal GD, Deventer, Netherlands
| | - Xhelil Koleci
- Faculty of Veterinary Medicine, Agricultural University of Tirana, Tirana, Albania
| | - Madalina Mincu
- Research and Development Institute for Bovine Balotesti, Ploiesti, Romania
| | - Jörn Gethmann
- Institute of Epidemiology, Friedrich-Loeffler-Institut, Greifswald, Germany
| | - Beate Conrady
- Unit of Veterinary Public Health and Epidemiology, Institute of Food Safety, Food Technology and Veterinary Public Health, University of Veterinary Medicine Vienna, Vienna, Austria.,Complexity Science Hub Vienna, Vienna, Austria.,Department of Veterinary and Animal Sciences, University of Copenhagen, Frederiksberg, Denmark
| | - Tanja Knific
- Veterinary Faculty, University of Ljubljana, Ljubljana, Slovenia
| | | | - John Berezowski
- Veterinary Public Health Institute, Vetsuisse Faculty, University of Bern, Bern, Switzerland
| | - Luís Pedro Carmo
- Veterinary Public Health Institute, Vetsuisse Faculty, University of Bern, Bern, Switzerland
| | | | - Attila Tarpai
- Section of Epidemiology, Norwegian Veterinary Institute, Oslo, Norway
| | - Anton Gerilovych
- Institute for Experimental and Clinical Veterinary Medicine, Kharkiv, Ukraine
| | - Alvydas Malakauskas
- Department of Veterinary Pathobiology, Faculty of Veterinary Medicine, Veterinary Academy, Lithuanian University of Health Sciences, Kaunas, Lithuania
| | - Blagica Sekovska
- Faculty of Veterinary Medicine, Ss. Cyril and Methodius University, Skopje, North Macedonia
| | | | - Emmanouil Kalaitzakis
- Clinic of Farm Animals, School of Veterinary Medicine, Aristotle University Thessaloniki, Thessaloniki, Greece
| | - Franz-Ferdinand Roch
- Unit of Veterinary Public Health and Epidemiology, Institute of Food Safety, Food Technology and Veterinary Public Health, University of Veterinary Medicine Vienna, Vienna, Austria
| | - Hans Houe
- Department of Veterinary and Animal Sciences, University of Copenhagen, Frederiksberg, Denmark
| | - Katarzyna Dudek
- Department of Cattle and Sheep Diseases, National Veterinary Research Institute, Pulawy, Poland
| | - Kerli Mõtus
- Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Tartu, Estonia
| | - László Ózsvári
- Department of Veterinary Forensics and Economics, University of Veterinary Medicine Budapest, Budapest, Hungary
| | - Lina Costa
- Polytechnic Institute of Portalegre, Praça Do Município 11, Portalegre, Portugal
| | | | - Madeleine K Henry
- Epidemiology Research Unit, Department of Veterinary and Animal Science, Northern Faculty, Scotland's Rural College, Inverness, United Kingdom
| | - Mentor Alishani
- Veterinary Department of the Faculty of Agriculture and Veterinary, University of Prishtina, Prishtina, Kosovo
| | - Nicola Pozzato
- Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Petter Hopp
- Section of Epidemiology, Norwegian Veterinary Institute, Oslo, Norway
| | - Ramon Juste
- Department of Animal Health, NEIKER-Basque Institute for Agricultural Research and Development, Arkaute, Spain
| | - Sam Strain
- Animal Health and Welfare Northern Ireland, Dungannon, United Kingdom
| | - Rene Mandelik
- Department of Epizootiology, Parasitology and Protection of One Health, University of Veterinary Medicine and Pharmacy, Kosice, Slovakia
| | - Štefan Vilček
- Department of Epizootiology, Parasitology and Protection of One Health, University of Veterinary Medicine and Pharmacy, Kosice, Slovakia
| | - Tiina Autio
- Veterinary Bacteriology and Pathology Unit, Finnish Food Authority, Kuopio, Finland
| | - Lena-Mari Tamminen
- Department of Clinical Sciences, Swedish University of Agricultural Sciences, Uppsala, Sweden
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Correia-Gomes C, Henry MK, Reeves A, Sparks N. Management and biosecurity practices by small to medium egg producers in Scotland. Br Poult Sci 2021; 62:499-508. [PMID: 33611987 DOI: 10.1080/00071668.2021.1894635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
1. Information about procedures and biosecurity practices used by small and medium egg producers (SMEPs) is scarce. Anecdotal evidence suggests that biosecurity in such enterprises may be poor, as personnel and equipment move freely between sites and this may be compounded by personnel working on commercial units who keep their own poultry.2. To fill this knowledge gap, a questionnaire was designed and implemented targeting SMEPs in Scotland. Small enterprises were defined as egg producers that have ≥50 laying hens but <350 laying hens; while medium enterprises were defined as egg producers that have ≥350 laying hens but ≤32 000 laying hens. The questionnaire consisted of a total of 56 questions divided into multiple sections, covering the characteristics of the primary keeper, location of the enterprise and size of the flocks, husbandry, marketing of products and health/biosecurity.3. The questionnaire was posted to 375 holdings at the beginning of March 2017 and the survey remained open until the end of May 2017. In total 90 questionnaires were received by the cut-off date of which 76 questionnaires were from SMEPs. Forty were small enterprises and 36 were medium enterprises. For three questionnaires, it was not possible to identify the enterprise type.4. Differences were observed between SMEPs in terms of reported biosecurity and management practices, with medium enterprises reporting the adoption of more biosecurity measures than small enterprises. Furthermore, SMEPs behave differently from backyard poultry keepers and large commercial companies in terms of disease risk.5. In conclusion, it is important to ensure that SMEPs are considered in contingency plans and disease control programmes and that engagement with them is promoted so that the uptake of relevant information, such as awareness of disease control programmes, is optimised.
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Affiliation(s)
- C Correia-Gomes
- Epidemiology Research Unit, Department of Veterinary and Animal Science, Scotland's Rural College (SRUC), Inverness, Scotland
| | - M K Henry
- Epidemiology Research Unit, Department of Veterinary and Animal Science, Scotland's Rural College (SRUC), Inverness, Scotland
| | - A Reeves
- Epidemiology Research Unit, Department of Veterinary and Animal Science, Scotland's Rural College (SRUC), Inverness, Scotland
| | - N Sparks
- South and West, Scotland's Rural College (SRUC), Parkgate Dumfries, Scotland
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7
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van Roon AM, Santman-Berends IMGA, Graham D, More SJ, Nielen M, van Duijn L, Mercat M, Fourichon C, Madouasse A, Gethmann J, Sauter-Louis C, Frössling J, Lindberg A, Correia-Gomes C, Gunn GJ, Henry MK, van Schaik G. A description and qualitative comparison of the elements of heterogeneous bovine viral diarrhea control programs that influence confidence of freedom. J Dairy Sci 2020; 103:4654-4671. [PMID: 32147269 DOI: 10.3168/jds.2019-16915] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2019] [Accepted: 01/02/2020] [Indexed: 11/19/2022]
Abstract
For endemic infections in cattle that are not regulated at the European Union level, such as bovine viral diarrhea virus (BVDV), European Member States have implemented control or eradication programs (CEP) tailored to their specific situations. Different methods are used to assign infection-free status in CEP; therefore, the confidence of freedom associated with the "free" status generated by different CEP are difficult to compare, creating problems for the safe trade of cattle between territories. Safe trade would be facilitated with an output-based framework that enables a transparent and standardized comparison of confidence of freedom for CEP across herds, regions, or countries. The current paper represents the first step toward development of such a framework by seeking to describe and qualitatively compare elements of CEP that contribute to confidence of freedom. For this work, BVDV was used as a case study. We qualitatively compared heterogeneous BVDV CEP in 6 European countries: Germany, France, Ireland, the Netherlands, Sweden, and Scotland. Information about BVDV CEP that were in place in 2017 and factors influencing the risk of introduction and transmission of BVDV (the context) were collected using an existing tool, with modifications to collect information about aspects of control and context. For the 6 participating countries, we ranked all individual elements of the CEP and their contexts that could influence the probability that cattle from a herd categorized as BVDV-free are truly free from infection. Many differences in the context and design of BVDV CEP were found. As examples, CEP were either mandatory or voluntary, resulting in variation in risks from neighboring herds, and risk factors such as cattle density and the number of imported cattle varied greatly between territories. Differences were also found in both testing protocols and definitions of freedom from disease. The observed heterogeneity in both the context and CEP design will create difficulties when comparing different CEP in terms of confidence of freedom from infection. These results highlight the need for a standardized practical methodology to objectively and quantitatively determine confidence of freedom resulting from different CEP around the world.
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Affiliation(s)
- A M van Roon
- Department of Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University, PO Box 80151, 3508, TD Utrecht, the Netherlands.
| | - I M G A Santman-Berends
- Department of Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University, PO Box 80151, 3508, TD Utrecht, the Netherlands; GD Animal Health, PO Box 9, 7400 AA, Deventer, the Netherlands
| | - D Graham
- Animal Health Ireland, Unit 4/5, The Archways, Bridge St., Carrick-on-Shannon, Co. Leitrim N41 WN27, Ireland
| | - S J More
- Centre for Veterinary Epidemiology and Risk Analysis, UCD School of Veterinary Medicine, University College Dublin, Belfield, Dublin D04 W6F6, Ireland
| | - M Nielen
- Department of Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University, PO Box 80151, 3508, TD Utrecht, the Netherlands
| | - L van Duijn
- GD Animal Health, PO Box 9, 7400 AA, Deventer, the Netherlands
| | - M Mercat
- BIOEPAR, INRA, Oniris, La Chantrerie, Nantes 44307, France
| | - C Fourichon
- BIOEPAR, INRA, Oniris, La Chantrerie, Nantes 44307, France
| | - A Madouasse
- BIOEPAR, INRA, Oniris, La Chantrerie, Nantes 44307, France
| | - J Gethmann
- Institute of Epidemiology, Friedrich-Loeffler-Institute, Südufer 10, 17493 Greifswald, Germany
| | - C Sauter-Louis
- Institute of Epidemiology, Friedrich-Loeffler-Institute, Südufer 10, 17493 Greifswald, Germany
| | - J Frössling
- Department of Disease Control and Epidemiology, National Veterinary Institute (SVA), 751 89 Uppsala, Sweden
| | - A Lindberg
- Department of Disease Control and Epidemiology, National Veterinary Institute (SVA), 751 89 Uppsala, Sweden
| | - C Correia-Gomes
- Scotland's Rural College, Kings Buildings, West Mains Road, Edinburgh, EH9 3JG, United Kingdom
| | - G J Gunn
- Scotland's Rural College, Kings Buildings, West Mains Road, Edinburgh, EH9 3JG, United Kingdom
| | - M K Henry
- Scotland's Rural College, Kings Buildings, West Mains Road, Edinburgh, EH9 3JG, United Kingdom
| | - G van Schaik
- Department of Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University, PO Box 80151, 3508, TD Utrecht, the Netherlands; GD Animal Health, PO Box 9, 7400 AA, Deventer, the Netherlands
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Henry MK, McCann CM, Humphry RW, Morgan M, Willett A, Evans J, Gunn GJ, Tongue SC. The British E. coli O157 in cattle study (BECS): factors associated with the occurrence of E. coli O157 from contemporaneous cross-sectional surveys. BMC Vet Res 2019; 15:444. [PMID: 31805948 PMCID: PMC6896709 DOI: 10.1186/s12917-019-2188-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Accepted: 11/25/2019] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Escherichia coli O157 is a bacterial pathogen associated with severe disease in humans for which cattle are an important reservoir of infection. The identification of possible risk factors for infection in cattle could facilitate the development of control strategies and interventions to mitigate the risk to human health. The purpose of this study was to utilize data collected in 2014-2015 during the two contemporaneous cross-sectional surveys of the British E. coli O157 in Cattle Study (BECS) to investigate potential risk factors for E. coli O157 status in cattle destined for the food chain. RESULTS In the England & Wales survey only one variable, herd size, was associated with the outcome farm-level E. coli O157 positive status. The odds increased for each additional animal in the herd. In the Scotland survey, as well as a measure of herd size (the number of cattle aged 12-30 months), having brought breeding females on to the farm in the last year also increased the odds, whereas farms sampled in spring were less likely to be positive compared to those sampled in autumn. On the positive farms, in both surveys, an increase in the proportion of pats positive for E. coli O157 was associated with animals being housed at the time of sampling. However, the effect of housing on pat-level prevalence within positive groups was lower on farms from England & Wales than from Scotland (OR 0.45 (95% C.I. 0.24-0.86)). CONCLUSION For the first time, factors associated with farm-level E. coli O157 status have been investigated in two contemporaneous surveys with comparable study design. Although factors associated with farm-level E. coli O157 status differed between the two surveys, one consistent factor was an association with a measure of herd size. Factors associated with the proportion of E. coli O157 positive pats within a positive farm were similar in both surveys but differed from those associated with farm-level status. These findings raise the hypothesis that measures to protect public health by reducing the risk from cattle may need to be tailored, rather than by assuming that a GB-wide protocol is the best approach.
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Affiliation(s)
- Madeleine K. Henry
- Epidemiology Research Unit (Inverness campus), Scotland’s Rural College (SRUC), Kings Buildings, West Mains Road, Edinburgh, EH9 3JG UK
| | - Catherine M. McCann
- Epidemiology Research Unit (Inverness campus), Scotland’s Rural College (SRUC), Kings Buildings, West Mains Road, Edinburgh, EH9 3JG UK
| | - Roger W. Humphry
- Epidemiology Research Unit (Inverness campus), Scotland’s Rural College (SRUC), Kings Buildings, West Mains Road, Edinburgh, EH9 3JG UK
| | - Mair Morgan
- RSK ADAS Ltd., Spring Lodge, 172 Chester Road, Helsby, Cheshire, WA6 0AR UK
| | - Alice Willett
- RSK ADAS Ltd., Spring Lodge, 172 Chester Road, Helsby, Cheshire, WA6 0AR UK
| | - Judith Evans
- Epidemiology Research Unit (Inverness campus), Scotland’s Rural College (SRUC), Kings Buildings, West Mains Road, Edinburgh, EH9 3JG UK
| | - George J. Gunn
- Epidemiology Research Unit (Inverness campus), Scotland’s Rural College (SRUC), Kings Buildings, West Mains Road, Edinburgh, EH9 3JG UK
| | - Sue C. Tongue
- Epidemiology Research Unit (Inverness campus), Scotland’s Rural College (SRUC), Kings Buildings, West Mains Road, Edinburgh, EH9 3JG UK
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9
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van Roon AM, Santman-Berends IMGA, Graham D, More SJ, Nielen M, Madouasse A, Mercat M, Fourichon C, Gethmann J, Frössling J, Lindberg A, Correia-Gomes C, Gunn GJ, Sauter-Louis C, Henry MK, van Duijn L, van Schaik G. STOC Free: An Innovative Framework to Compare Probability of Freedom From Infection in Heterogeneous Control Programmes. Front Vet Sci 2019; 6:133. [PMID: 31134213 PMCID: PMC6524710 DOI: 10.3389/fvets.2019.00133] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2018] [Accepted: 04/09/2019] [Indexed: 11/13/2022] Open
Abstract
The existence, stage of eradication and design of control programmes (CPs) for diseases that are not regulated by the EU differ between Member States. When freedom from infection is reached or being pursued, safe trade is essential to protect or reach that status. The aim of STOC free, a collaborative project between six countries, is to develop and validate a framework that enables a transparent and standardized comparison of confidence of freedom for CPs across herds, regions or countries. The framework consists of a model combined with a tool to facilitate the collection of the necessary parameters. All relevant actions taken in a CP are included in a Bayesian network model, which allows prior distributions for most parameters. In addition, frequency of occurrence and risk estimates for factors that influence either the probability of introduction or temporary misclassification leading to delayed detection of the infection are included in the model. Bovine viral diarrhea virus (BVDV) is used as an example disease. Many countries have CPs in place for BVDV and although elements of the CPs are similar, biosecurity measures and testing protocols, including types of tests and testing frequency, as well as target groups, differ widely. Although the initially developed framework is based on BVDV, the aim is to make it sufficiently generic to be adaptable to CPs for other diseases and possibly other species. Thus, STOC free will result in a single general framework, adaptable to multiple disease CPs, which aims to enhance the safety of trade.
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Affiliation(s)
- Annika M van Roon
- Department of Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University, Utrecht, Netherlands
| | - Inge M G A Santman-Berends
- Department of Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University, Utrecht, Netherlands.,Department of Epidemiology, GD Animal Health, Deventer, Netherlands
| | - David Graham
- Animal Health Ireland, Carrick-on-Shannon, Ireland
| | - Simon J More
- Centre for Veterinary Epidemiology and Risk Analysis, Veterinary Sciences Centre, University College Dublin, Dublin, Ireland
| | - Mirjam Nielen
- Department of Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University, Utrecht, Netherlands
| | | | - Mathilde Mercat
- BIOEPAR, INRA, Oniris, Université Bretagne Loire, Nantes, France
| | | | - Jörn Gethmann
- Friedrich-Loeffler-Institut, Institute of Epidemiology, Greifswald, Germany
| | - Jenny Frössling
- Swedish National Veterinary Institute (SVA), Uppsala, Sweden
| | - Ann Lindberg
- Swedish National Veterinary Institute (SVA), Uppsala, Sweden
| | | | - George J Gunn
- SRUC (Scotland's Rural College), Edinburgh, United Kingdom
| | | | | | - Linda van Duijn
- Department of Epidemiology, GD Animal Health, Deventer, Netherlands
| | - Gerdien van Schaik
- Department of Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University, Utrecht, Netherlands.,Department of Epidemiology, GD Animal Health, Deventer, Netherlands
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Correia-Gomes C, Henry MK, Auty HK, Gunn GJ. Exploring the role of small-scale livestock keepers for national biosecurity—The pig case. Prev Vet Med 2017; 145:7-15. [DOI: 10.1016/j.prevetmed.2017.06.005] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2016] [Revised: 06/12/2017] [Accepted: 06/12/2017] [Indexed: 11/29/2022]
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11
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Correia-Gomes C, Smith RP, Eze JI, Henry MK, Gunn GJ, Williamson S, Tongue SC. Pig Abattoir Inspection Data: Can It Be Used for Surveillance Purposes? PLoS One 2016; 11:e0161990. [PMID: 27564417 PMCID: PMC5001630 DOI: 10.1371/journal.pone.0161990] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2016] [Accepted: 08/16/2016] [Indexed: 11/18/2022] Open
Abstract
Statutory recording of carcass lesions at the abattoir may have significant potential as a resource for surveillance of livestock populations. Food Standards Agency (FSA) data in Great Britain are not currently used for surveillance purposes. There are concerns that the sensitivity of detection, combined with other issues, may make the outputs unreliable. In this study we postulate that FSA data could be used for surveillance purposes. To test this we compared FSA data with BPHS (a targeted surveillance system of slaughtered pigs) and laboratory diagnostic scanning surveillance (FarmFile) data, from mid-2008 to mid-2012, for respiratory conditions and tail bite lesions in pigs at population level. We also evaluated the agreement/correlation at batch level between FSA and BPHS inspections in four field trials during 2013. Temporal trends and regional differences at population level were described and compared using logistic regression models. Population temporal analysis showed an increase in respiratory disease in all datasets but with regional differences. For tail bite, the temporal trend and monthly patterns were completely different between the datasets. The field trials were run in three abattoirs and included 322 batches. Pearson’s correlation and Cohen’s kappa tests were used to assess correlation/agreement between inspections systems. It was moderate to strong for high prevalence conditions but slight for low prevalence conditions. We conclude that there is potential to use FSA data as a component of a surveillance system to monitor temporal trends and regional differences of chosen indicators at population level. At producer level and for low prevalence conditions it needs further improvement. Overall a number of issues still need to be addressed in order to provide the pig industry with the confidence to base their decisions on these FSA inspection data. Similar conclusions, at national level, may apply to other livestock sectors but require further evaluation of the inspection and data collection processes.
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Affiliation(s)
- Carla Correia-Gomes
- Epidemiology Research Unit, Future Farming Systems Research Group, Scotland’s Rural College, Kings Building, West Mains Road, Edinburgh, United Kingdom
- * E-mail:
| | - Richard P. Smith
- Animal and Plant Health Agency, New Haw, Addlestone, Weybridge, Surrey, United Kingdom
| | - Jude I. Eze
- Epidemiology Research Unit, Future Farming Systems Research Group, Scotland’s Rural College, Kings Building, West Mains Road, Edinburgh, United Kingdom
| | - Madeleine K. Henry
- Epidemiology Research Unit, Future Farming Systems Research Group, Scotland’s Rural College, Kings Building, West Mains Road, Edinburgh, United Kingdom
| | - George J. Gunn
- Epidemiology Research Unit, Future Farming Systems Research Group, Scotland’s Rural College, Kings Building, West Mains Road, Edinburgh, United Kingdom
| | - Susanna Williamson
- Animal and Plant Health Agency, Rougham Hill, Bury St Edmunds, Suffolk, United Kingdom
| | - Sue C. Tongue
- Epidemiology Research Unit, Future Farming Systems Research Group, Scotland’s Rural College, Kings Building, West Mains Road, Edinburgh, United Kingdom
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Henry MK, Tongue SC, Gunn GJ. E coli prevalence study among finishing cattle in the UK. Vet Rec 2014; 175:208. [PMID: 25172654 DOI: 10.1136/vr.g5328] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Madeleine K Henry
- Epidemiology Research Unit, SRUC Drummondhill, Stratherrick Road, Inverness IV2 4JZ
| | - Sue C Tongue
- Epidemiology Research Unit, SRUC Drummondhill, Stratherrick Road, Inverness IV2 4JZ
| | - George J Gunn
- Epidemiology Research Unit, SRUC Drummondhill, Stratherrick Road, Inverness IV2 4JZ
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13
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Henry MK, Unsworth BR, Sychev V, Guryeva TS, Dadasheva OA, Piert SJ, Lagel KE, Dubrovin LC, Jahns GC, Boda K, Sabo V, Samet MM, Lelkes PI. Launch conditions might affect the formation of blood vessels in the quail chorioallantoic membrane. Folia Vet 2001; 42 Suppl:S25-31. [PMID: 11543304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/21/2023] Open
Abstract
As a part of the first joint USA-Russian MIR/Shuttle program, fertilized quail eggs were flown on the MIR 18 mission. Post-flight examination indicated impaired survival of both the embryos in space and also of control embryo exposed to vibrational and g-forces simulating the condition experienced during the launch of Progress 227. We hypothesized that excess mechanical forces and/or other conditions during the launch might cause abnormal development or the blood supply in the chorioallantoic membrane (CAM) leading to the impaired survival of the embryos. The CAM, a highly vascularized extraembryonic organ, provides for the oxygen exchange across the egg shell and is thus pivotal for proper embryonic development. To test our hypothesis, we compared angiogenesis in CAMs of eggs which were either exposed to the vibration and g-force profile simulating the conditions at launch of Progress 227 (synchronous controls), or kept under routine conditions in a laboratory incubator (laboratory controls). At various time points during incubation, the eggs were fixed in paraformaldehyde for subsequent dissection. At the time of dissection, the CAM was carefully lifted from the egg shell and examined as whole mounts by bright-field and fluorescent microscopy. The development of the vasculature (angiogenesis) was assessed from the density of blood vessels per viewing field and evaluated by computer aided image analysis. We observed a significant decrease in blood-vessel density in the synchronous controls versus "normal" laboratory controls beginning from day 10 of incubation. The decrease in vascular density was restricted to the smallest vessels only, suggesting that conditions during the launch and/or during the subsequent incubation of the eggs may affect the normal progress of angiogenesis in the CAM. Abnormal angiogensis in the CAM might contribute to the impaired survival of the embryos observed in synchronous controls as well as in space.
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Affiliation(s)
- M K Henry
- Biology Department, Marquette University, Milwaukee, WI, USA
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Eapen AK, Henry MK, Quelle DE, Quelle FW. Dna damage-induced G(1) arrest in hematopoietic cells is overridden following phosphatidylinositol 3-kinase-dependent activation of cyclin-dependent kinase 2. Mol Cell Biol 2001; 21:6113-21. [PMID: 11509654 PMCID: PMC87328 DOI: 10.1128/mcb.21.18.6113-6121.2001] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Exposure of hematopoietic cells to DNA-damaging agents induces p53-independent cell cycle arrest at a G(1) checkpoint. Previously, we have shown that this growth arrest can be overridden by cytokine growth factors, such as erythropoietin or interleukin-3, through activation of a phosphatidylinositol 3-kinase (PI 3-kinase)/Akt-dependent signaling pathway. Here, we show that gamma-irradiated murine myeloid 32D cells arrest in G(1) with active cyclin D-cyclin-dependent kinase 4 (Cdk4) but with inactive cyclin E-Cdk2 kinases. The arrest was associated with elevated levels of the Cdk inhibitors p21(Cip1) and p27(Kip1), yet neither was associated with Cdk2. Instead, irradiation-induced inhibition of cyclin E-Cdk2 correlated with absence of the activating threonine-160 phosphorylation on Cdk2. Cytokine treatment of irradiated cells induced Cdk2 phosphorylation and activation, and cells entered into S phase despite sustained high-level expression of p21 and p27. Notably, the PI 3-kinase inhibitor, LY294002, completely blocked cytokine-induced Cdk2 activation and cell growth in irradiated 32D cells but not in nonirradiated cells. Together, these findings demonstrate a novel mechanism underlying the DNA damage-induced G(1) arrest of hematopoietic cells, that is, inhibition of Cdk2 phosphorylation and activation. These observations link PI 3-kinase signaling pathways with the regulation of Cdk2 activity.
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Affiliation(s)
- A K Eapen
- Department of Pharmacology, The University of Iowa College of Medicine, Iowa City, Iowa 52242, USA
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Henry MK, Lynch JT, Eapen AK, Quelle FW. DNA damage-induced cell-cycle arrest of hematopoietic cells is overridden by activation of the PI-3 kinase/Akt signaling pathway. Blood 2001; 98:834-41. [PMID: 11468186 DOI: 10.1182/blood.v98.3.834] [Citation(s) in RCA: 70] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Exposure of hematopoietic cells to DNA-damaging agents induces cell-cycle arrest at G1 and G2/M checkpoints. Previously, it was shown that DNA damage-induced growth arrest of hematopoietic cells can be overridden by treatment with cytokine growth factors, such as erythropoietin (EPO) or interleukin-3 (IL-3). Here, the cytokine-activated signaling pathways required to override G1 and G2/M checkpoints induced by gamma-irradiation (gamma-IR) are characterized. Using factor-dependent myeloid cells stably expressing EPO receptor (EPO-R) mutants, it is shown that removal of a minimal domain required for PI-3K signaling abrogated the ability of EPO to override gamma-IR-induced cell-cycle arrest. Similarly, the ability of cytokines to override gamma-IR-induced arrest was abolished by an inhibitor of PI-3K (LY294002) or by overexpression of dominant-negative Akt. Moreover, the ability of EPO to override these checkpoints in cells expressing defective EPO-R mutants could be restored by overexpression of a constitutively active Akt. Thus, activation of a PI-3K/Akt signaling pathway is required for cytokine-dependent suppression of DNA-damage induced checkpoints. Together, these findings suggest a novel role for PI-3K/Akt pathways in the modulation of growth arrest responses to DNA damage in hematopoietic cells. (Blood. 2001;98:834-841)
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Affiliation(s)
- M K Henry
- Department of Pharmacology, The University of Iowa College of Medicine, Iowa City, IA 52242, USA
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Abstract
In this paper, the relevance of word structure knowledge to decoding and spelling instruction is discussed. An explicit, discussion oriented, direct approach to teaching decoding and spelling based on word origin and structure results in improved reading and spelling. This instruction leads students to a comparison and contrast of letter-sound correspondences, syllable patterns, and morpheme patterns in English words of Anglo-Saxon, Romance, and Greek origin.
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Affiliation(s)
- M K Henry
- San Jose State University, San Jose, California
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