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McGrath-Morrow SA, Venezia J, Ndeh R, Michki N, Perez J, Singer BD, Cimbro R, Soloski M, Scott AL. Cellular and molecular dynamics in the lungs of neonatal and juvenile mice in response to E. coli. eLife 2023; 12:e82933. [PMID: 37266566 PMCID: PMC10264069 DOI: 10.7554/elife.82933] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Accepted: 06/01/2023] [Indexed: 06/03/2023] Open
Abstract
Bacterial pneumonia in neonates can cause significant morbidity and mortality when compared to other childhood age groups. To understand the immune mechanisms that underlie these age-related differences, we employed a mouse model of Escherichia coli pneumonia to determine the dynamic cellular and molecular differences in immune responsiveness between neonates (PND 3-5) and juveniles (PND 12-18), at 24, 48, and 72 hr. Cytokine gene expression from whole lung extracts was also quantified at these time points, using quantitative RT-PCR. E. coli challenge resulted in rapid and significant increases in neutrophils, monocytes, and γδT cells, along with significant decreases in dendritic cells and alveolar macrophages in the lungs of both neonates and juveniles. E. coli-challenged juvenile lung had significant increases in interstitial macrophages and recruited monocytes that were not observed in neonatal lungs. Expression of IFNγ-responsive genes was positively correlated with the levels and dynamics of MHCII-expressing innate cells in neonatal and juvenile lungs. Several facets of immune responsiveness in the wild-type neonates were recapitulated in juvenile MHCII-/- juveniles. Employing a pre-clinical model of E. coli pneumonia, we identified significant differences in the early cellular and molecular dynamics in the lungs that likely contribute to the elevated susceptibility of neonates to bacterial pneumonia and could represent targets for intervention to improve respiratory outcomes and survivability of neonates.
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Affiliation(s)
- Sharon A McGrath-Morrow
- Children's Hospital of Philadelphia Division of Pulmonary Medicine and SleepPhiladelphiaUnited States
| | - Jarrett Venezia
- W Harry Feinstone Department of Molecular Microbiology and Immunology, Bloomberg School of Public HealthBaltimoreUnited States
| | - Roland Ndeh
- Children's Hospital of Philadelphia Division of Pulmonary Medicine and SleepPhiladelphiaUnited States
| | - Nigel Michki
- Children's Hospital of Philadelphia Division of Pulmonary Medicine and SleepPhiladelphiaUnited States
| | - Javier Perez
- Children's Hospital of Philadelphia Division of Pulmonary Medicine and SleepPhiladelphiaUnited States
| | - Benjamin David Singer
- Division of Pulmonary and Critical Care Medicine, Department of Medicine Northwestern, University Feinberg School of MedicineChicagoUnited States
| | - Raffaello Cimbro
- Department of Medicine, Division of Rheumatology, Johns Hopkins University, School of MedicineBaltimoreUnited States
| | - Mark Soloski
- Department of Medicine, Division of Rheumatology, Johns Hopkins University, School of MedicineBaltimoreUnited States
| | - Alan L Scott
- W Harry Feinstone Department of Molecular Microbiology and Immunology, Bloomberg School of Public HealthBaltimoreUnited States
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Veling MW, Li Y, Veling MT, Litts C, Michki N, Liu H, Ye B, Cai D. Identification of Neuronal Lineages in the Drosophila Peripheral Nervous System with a "Digital" Multi-spectral Lineage Tracing System. Cell Rep 2020; 29:3303-3312.e3. [PMID: 31801091 PMCID: PMC6913890 DOI: 10.1016/j.celrep.2019.10.124] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2019] [Revised: 09/27/2019] [Accepted: 10/29/2019] [Indexed: 11/19/2022] Open
Abstract
Elucidating cell lineages provides crucial understanding of development. Recently developed sequencing-based techniques enhance the scale of lineage tracing but eliminate the spatial information offered by conventional approaches. Multi-spectral labeling techniques, such as Brainbow, have the potential to identify lineage-related cells in situ. Here, we report nuclear Bitbow (nBitbow), a “digital” version of Brainbow that greatly expands the color diversity for scoring cells, and a suite of statistical methods for quantifying the lineage relationship of any two cells. Applying these tools to the Drosophila peripheral nervous system (PNS), we determined lineage relationship between all neuronal pairs. This study demonstrates nBitbow as an efficient tool for in situ lineage mapping, and the complete lineage relationship among larval PNS neurons opens new possibilities for studying how neurons gain specific features and circuit connectivity. Veling et al. report a multi-color labeling system and statistical methods for mapping cell lineages. They identify the lineage relationship of all neurons in the peripheral nervous system of Drosophila larvae and show the utility of this technique in mapping neurons in the CNS.
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Affiliation(s)
- Macy W Veling
- Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA; Cellular and Molecular Biology Graduate Program, University of Michigan, Ann Arbor, MI 48109, USA
| | - Ye Li
- Department of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA
| | - Mike T Veling
- Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA
| | - Christopher Litts
- Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA
| | - Nigel Michki
- Department of Biophysics, University of Michigan, Ann Arbor, MI 48109, USA
| | - Hao Liu
- Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA; Department of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA
| | - Bing Ye
- Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA; Cellular and Molecular Biology Graduate Program, University of Michigan, Ann Arbor, MI 48109, USA; Department of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA.
| | - Dawen Cai
- Department of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA; Department of Biophysics, University of Michigan, Ann Arbor, MI 48109, USA.
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