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Hogendoorn C, Pol A, de Graaf R, White PB, Mesman R, van Galen PM, van Alen TA, Cremers G, Jansen RS, Jetten MSM, Op den Camp HJM. " Candidatus Hydrogenisulfobacillus filiaventi" strain R50 gen. nov. sp. nov., a highly efficient producer of extracellular organic compounds from H 2 and CO 2. Front Microbiol 2023; 14:1151097. [PMID: 37032882 PMCID: PMC10080006 DOI: 10.3389/fmicb.2023.1151097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Accepted: 03/08/2023] [Indexed: 04/11/2023] Open
Abstract
Production of organic molecules is largely depending on fossil fuels. A sustainable alternative would be the synthesis of these compounds from CO2 and a cheap energy source, such as H2, CH4, NH3, CO, sulfur compounds or iron(II). Volcanic and geothermal areas are rich in CO2 and reduced inorganic gasses and therefore habitats where novel chemolithoautotrophic microorganisms for the synthesis of organic compounds could be discovered. Here we describe "Candidatus Hydrogenisulfobacillus filiaventi" R50 gen. nov., sp. nov., a thermoacidophilic, autotrophic H2-oxidizing microorganism, that fixed CO2 and excreted no less than 0.54 mol organic carbon per mole fixed CO2. Extensive metabolomics and NMR analyses revealed that Val, Ala and Ile are the most dominant form of excreted organic carbon while the aromatic amino acids Tyr and Phe, and Glu and Lys were present at much lower concentrations. In addition to these proteinogenic amino acids, the excreted carbon consisted of homoserine lactone, homoserine and an unidentified amino acid. The biological role of the excretion remains uncertain. In the laboratory, we noticed the production under high growth rates (0.034 h-1, doubling time of 20 h) in combination with O2-limitation, which will most likely not occur in the natural habitat of this strain. Nevertheless, this large production of extracellular organic molecules from CO2 may open possibilities to use chemolithoautotrophic microorganisms for the sustainable production of important biomolecules.
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Affiliation(s)
- Carmen Hogendoorn
- Department of Microbiology, RIBES, Radboud University, Nijmegen, Netherlands
| | - Arjan Pol
- Department of Microbiology, RIBES, Radboud University, Nijmegen, Netherlands
| | - Rob de Graaf
- Department of Microbiology, RIBES, Radboud University, Nijmegen, Netherlands
| | - Paul B. White
- Department of Synthetic Organic Chemistry, IMM, Radboud University, Nijmegen, Netherlands
| | - Rob Mesman
- Department of Microbiology, RIBES, Radboud University, Nijmegen, Netherlands
| | - Peter M. van Galen
- Department of Systems Chemistry, IMM, Faculty of Science, Radboud University, Nijmegen, Netherlands
| | - Theo A. van Alen
- Department of Microbiology, RIBES, Radboud University, Nijmegen, Netherlands
| | - Geert Cremers
- Department of Microbiology, RIBES, Radboud University, Nijmegen, Netherlands
| | - Robert S. Jansen
- Department of Microbiology, RIBES, Radboud University, Nijmegen, Netherlands
| | - Mike S. M. Jetten
- Department of Microbiology, RIBES, Radboud University, Nijmegen, Netherlands
| | - Huub J. M. Op den Camp
- Department of Microbiology, RIBES, Radboud University, Nijmegen, Netherlands
- *Correspondence: Huub J. M. Op den Camp,
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de Graaf RM, Krosse S, Swolfs AEM, te Brinke E, Prill N, Leimu R, van Galen PM, Wang Y, Aarts MGM, van Dam NM. Isolation and identification of 4-α-rhamnosyloxy benzyl glucosinolate in Noccaea caerulescens showing intraspecific variation. Phytochemistry 2015; 110:166-71. [PMID: 25482220 DOI: 10.1016/j.phytochem.2014.11.016] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2014] [Revised: 11/07/2014] [Accepted: 11/14/2014] [Indexed: 05/09/2023]
Abstract
Glucosinolates are secondary plant compounds typically found in members of the Brassicaceae and a few other plant families. Usually each plant species contains a specific subset of the ∼ 130 different glucosinolates identified to date. However, intraspecific variation in glucosinolate profiles is commonly found. Sinalbin (4-hydroxybenzyl glucosinolate) so far has been identified as the main glucosinolate of the heavy metal accumulating plant species Noccaea caerulescens (Brassicaceae). However, a screening of 13 N. caerulescens populations revealed that in 10 populations a structurally related glucosinolate was found as the major component. Based on nuclear magnetic resonance (NMR) and mass spectrometry analyses of the intact glucosinolate as well as of the products formed after enzymatic conversion by sulfatase or myrosinase, this compound was identified as 4-α-rhamnosyloxy benzyl glucosinolate (glucomoringin). So far, glucomoringin had only been reported as the main glucosinolate of Moringa spp. (Moringaceae) which are tropical tree species. There was no apparent relation between the level of soil pollution at the location of origin, and the presence of glucomoringin. The isothiocyanate that is formed after conversion of glucomoringin is a potent antimicrobial and antitumor agent. It has yet to be established whether glucomoringin or its breakdown product have an added benefit to the plant in its natural habitat.
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Affiliation(s)
- Rob M de Graaf
- Molecular Interaction Ecology, Institute of Water and Wetland Research (IWWR), Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands; Department of Microbiology, Institute of Water and Wetland Research (IWWR), Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands.
| | - Sebastian Krosse
- Molecular Interaction Ecology, Institute of Water and Wetland Research (IWWR), Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
| | - Ad E M Swolfs
- Synthetic Organic Chemistry, Institute for Molecules and Materials (IMM), Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
| | - Esra te Brinke
- Physical Organic Chemistry, Institute for Molecules and Materials (IMM), Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
| | - Nadine Prill
- Department of Plant Sciences, University of Oxford, South Parks Road, OX1 3RB, UK
| | - Roosa Leimu
- Department of Plant Sciences, University of Oxford, South Parks Road, OX1 3RB, UK
| | - Peter M van Galen
- Bio-Organic Chemistry, Institute for Molecules and Materials (IMM), Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
| | - Yanli Wang
- Laboratory of Genetics, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
| | - Mark G M Aarts
- Laboratory of Genetics, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
| | - Nicole M van Dam
- Molecular Interaction Ecology, Institute of Water and Wetland Research (IWWR), Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands; German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany; Friedrich Schiller University Jena, Institute of Ecology, Dornburger-Str. 159, 07743 Jena, Germany
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