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Jinnai M, Yamaguchi T, Minh DTN, Hoang ON, Thi HL, Thanh PN, Hoai PH, Do PN, Van CD, Kumeda Y, Hase A, Nakayama T. ESBL-producing Atlantibacter hermannii harboring a plasmid encoding IS 26 up and down stream of blaCTX-M-27 , blaLAP-2, and qnrS1 isolated from an edible river Anabas testudineus fish. Microbiol Resour Announc 2024:e0005624. [PMID: 38682768 DOI: 10.1128/mra.00056-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Accepted: 04/10/2024] [Indexed: 05/01/2024] Open
Abstract
Extended-spectrum β-lactamase-producing Atlantibacter hermannii was isolated from an edible river fish, Anabas testudineus, which was sold in a market located in Vietnam. The genome sequence was obtained by using next-generation sequencing, which involved Oxford Nanopore and Illumina technologies. The 92 kb plasmid encodes the gene blaCTX-M-27.
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Affiliation(s)
- Michio Jinnai
- Department of Microbiology, Kanagawa Prefectural Institute of Public Health, Chigasaki, Kanagawa, Japan
| | - Takahiro Yamaguchi
- Division of Microbiology, Osaka Institute of Public Health, Higashinari, Osaka, Japan
| | | | - Oanh Nguyen Hoang
- Institute of Public Health Ho Chi Minh City, Ho Chi Minh City, Vietnam
| | - Hien Le Thi
- Institute of Public Health Ho Chi Minh City, Ho Chi Minh City, Vietnam
| | - Phong Ngo Thanh
- Institute of Public Health Ho Chi Minh City, Ho Chi Minh City, Vietnam
| | - Phuong Hoang Hoai
- Institute of Public Health Ho Chi Minh City, Ho Chi Minh City, Vietnam
| | - Phuc Nguyen Do
- Institute of Public Health Ho Chi Minh City, Ho Chi Minh City, Vietnam
| | - Chinh Dang Van
- Institute of Public Health Ho Chi Minh City, Ho Chi Minh City, Vietnam
| | - Yuko Kumeda
- Research Center of Microorganism Control, Osaka Metropolitan University, Sakai, Osaka, Japan
| | - Astushi Hase
- Faculty of Contemporary Human Life Science, Tezukayama University, Nara, Japan
| | - Tatsuya Nakayama
- Graduate School of Integrated Sciences for Life,, Hiroshima University, Higashi-Hiroshima, Hiroshima, Japan
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Yamaguchi T, Jinnai M, Nguyen Minh DT, Hoang ON, Thi HL, Ngo Thanh P, Hoang Hoai P, Do PN, Dang Van C, Motooka D, Nakamura S, Kumeda Y, Hase A, Nakayama T. IncA/C plasmid encoding blaCTX-M-55 in non-O1 Vibrio cholerae isolates from the edible river fish Mastacembelus sp. Microbiol Resour Announc 2024; 13:e0122623. [PMID: 38358276 DOI: 10.1128/mra.01226-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Accepted: 01/26/2024] [Indexed: 02/16/2024] Open
Abstract
Extended-spectrum β-lactamase-producing non-O1 Vibrio cholerae was isolated from edible Mastacembelus sp. in Vietnam. The genome sequence was sequenced using DNBSEQ-G400 and MinION Mk1b. A plasmid of approximately 183-kb encoding blaCTX-M-55 and blaTEM-1 was detected.
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Affiliation(s)
- Takahiro Yamaguchi
- Division of Microbiology, Osaka Institute of Public Health, Osaka, Japan
| | - Michio Jinnai
- Department of Microbiology, Kanagawa Prefectural Institute of Public Health, Chigasaki, Kanagawa, Japan
| | | | - Oanh Nguyen Hoang
- Institute of Public Health in Ho Chi Minh City, Ho Chi Minh City, Vietnam
| | | | - Phong Ngo Thanh
- Institute of Public Health in Ho Chi Minh City, Ho Chi Minh City, Vietnam
| | - Phuong Hoang Hoai
- Institute of Public Health in Ho Chi Minh City, Ho Chi Minh City, Vietnam
| | - Phuc Nguyen Do
- Institute of Public Health in Ho Chi Minh City, Ho Chi Minh City, Vietnam
| | - Chinh Dang Van
- Institute of Public Health in Ho Chi Minh City, Ho Chi Minh City, Vietnam
| | - Daisuke Motooka
- Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Suita, Osaka, Japan
| | - Shota Nakamura
- Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Suita, Osaka, Japan
| | - Yuko Kumeda
- Research Center of Microorganism Control, Osaka Metropolitan University, Sakai, Osaka, Japan
| | - Atsushi Hase
- Faculty of Contemporary Human Life Science, Tezukayama University, Nara, Japan
| | - Tatsuya Nakayama
- Graduate School of Integrated Sciences for Life, Hiroshima University, Higashi-Hiroshima, Hiroshima, Japan
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Yamaguchi T, Yokota M, Jinnai M, Minh DTN, Hoang ON, Le Thi H, Thanh PN, Hoang Hoai P, Nguyen Do P, Van CD, Motooka D, Nakamura S, Kawahara R, Kumeda Y, Hase A, Nakayama T. Detection of chromosome-mediated bla NDM-1-carrying Aeromonas spp. in the intestinal contents of fresh water river fish in Ho Chi Minh City, Vietnam. Mar Pollut Bull 2024; 198:115812. [PMID: 38043208 DOI: 10.1016/j.marpolbul.2023.115812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Revised: 11/14/2023] [Accepted: 11/15/2023] [Indexed: 12/05/2023]
Abstract
The spread of antibiotic-resistant bacteria is a global problem that should be addressed through the perspective of the "one health" concept. The purpose of this study was to determine the contamination rate of antibiotic-resistant Aeromonas spp. in fresh water river fish purchased from a fish market in Vietnam. We then defined the pattern of antibiotic resistance to assess antibiotic-resistant contamination. Antibiotic-resistant Aeromonas spp. were detected in the intestinal contents of 32 of 80 fish. blaNDM-1 was detected in seven strains. Extended-spectrum β-lactamase and AmpC β-lactamase-related genes were detected in 28 strains, including blaCTX-M-55, blaCTX-M-15, blaCTX-M-1, and blaDHA,blaFOX, and blaMOX. The blaNDM-1 detected in the seven Aeromonas spp. strains were found chromosomally. This finding suggests that the blaNDM gene is stable in the natural environment and may spread widely into animals and humans via Aeromonas spp. with a transposon. Our results suggest the importance of continuing to monitor carbapenemase genes in Aeromonas spp. to evaluate the possibility that they may spread in other Enterobacterales, and to elucidate the mechanism of spread.
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Affiliation(s)
| | - Masaharu Yokota
- Division of Microbiology Osaka Institute of Public Health, Osaka, Japan
| | - Michio Jinnai
- Kanagawa Prefectural Institute of Public Health, Kanagawa, Japan
| | | | | | - Hien Le Thi
- Institute of Public Health, Ho Chi Minh City, Viet Nam
| | | | | | | | | | - Daisuke Motooka
- Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan
| | - Shota Nakamura
- Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan
| | - Ryuji Kawahara
- Division of Microbiology Osaka Institute of Public Health, Osaka, Japan
| | | | | | - Tatsuya Nakayama
- Graduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima, Japan.
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Nakayama T, Yamamoto S, Ohata N, Yamaguchi T, Jinnai M, Minh DTN, Hoang ON, Thi HL, Thanh PN, Hoai PH, Do PN, Van CD, Kumeda Y, Hase A. IncHI2 Plasmid Encoding blaCTX-M-55 and mcr-1.1 in Salmonella enterica SE20-C72-2 and Escherichia coli EC20-C72-1 Isolates from the Edible River Fish Anabas testudineus. Microbiol Resour Announc 2023:e0014923. [PMID: 37367473 DOI: 10.1128/mra.00149-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Accepted: 06/01/2023] [Indexed: 06/28/2023] Open
Abstract
Salmonella enterica SE20-C72-2 and Escherichia coli EC20-C72-1 were isolated from the edible fish Anabas testudineus in Vietnam. The chromosomes and plasmids from both strains were sequenced using Oxford Nanopore and Illumina sequencing. Plasmids approximately 250 kbp long, encoding blaCTX-M-55 and mcr-1.1, were detected in both strains.
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Affiliation(s)
- Tatsuya Nakayama
- Graduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima, Japan
- Division of Biomedical Food Research, National Institute of Health Sciences, Kawasaki, Kanagawa, Japan
| | - Shiori Yamamoto
- Division of Biomedical Food Research, National Institute of Health Sciences, Kawasaki, Kanagawa, Japan
- Department of Nutrition and Dietetics, Kamakura Women's University, Kanagawa, Japan
| | - Natsuki Ohata
- Graduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima, Japan
| | - Takahiro Yamaguchi
- Department of Microbiology, Osaka Institute of Public Health, Osaka, Japan
| | - Michio Jinnai
- Department of Microbiology, Kanagawa Prefectural Institute of Public Health, Kanagawa, Japan
| | | | | | - Hien Le Thi
- Institute of Public Health, Ho Chi Minh City, Vietnam
| | | | | | | | | | - Yuko Kumeda
- Research Center of Microorganism Control, Osaka Metropolitan University, Osaka, Japan
| | - Atsushi Hase
- Faculty of Contemporary Human Life Science, Tezukayama University, Nara, Japan
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Nakayama T, Yamaguchi T, Minh DTN, Hoang ON, Thi HL, Thanh PN, Hoai PH, Jinnai M, Do PN, Van CD, Kumeda Y, Hase A. Carbapenem-Resistant Citrobacter freundii and Escherichia coli Harboring a Common IncC-Type Plasmid Encoding IS 26 Upstream of blaNDM-1, sul1, aph(3')-VI, and qacE Isolated from Edible Mastacembelidae Fish. Microbiol Resour Announc 2023; 12:e0134422. [PMID: 37010426 DOI: 10.1128/mra.01344-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/04/2023] Open
Abstract
Carbapenem-resistant Citrobacter freundii CF20-4P-1 and Escherichia coli EC20-4B-2 were isolated from edible Mastacembelidae in Vietnam. We present the draft genome sequences, and the complete plasmid genome sequencing was also performed by hybrid assembly sequencing of Oxford Nanopore and Illumina. The 137-kbp plasmid encoding the assembled blaNDM-1 was detected in both strains.
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Affiliation(s)
- Tatsuya Nakayama
- Graduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima, Japan
| | - Takahiro Yamaguchi
- Division of Microbiology, Osaka Institute of Public Health, Osaka City, Osaka, Japan
| | - Doan Tran Nguyen Minh
- Division of Food Microbiology, Institute of Public Health, Ho Chi Minh City, Vietnam
| | - Oanh Nguyen Hoang
- Division of Food Microbiology, Institute of Public Health, Ho Chi Minh City, Vietnam
| | - Hien Le Thi
- Division of Food Microbiology, Institute of Public Health, Ho Chi Minh City, Vietnam
| | - Phong Ngo Thanh
- Division of Food Microbiology, Institute of Public Health, Ho Chi Minh City, Vietnam
| | - Phuong Hoang Hoai
- Division of Food Microbiology, Institute of Public Health, Ho Chi Minh City, Vietnam
| | - Michio Jinnai
- Kanagawa Institute of Public Health, Chigasaki City, Kanagawa, Japan
| | - Phuc Nguyen Do
- Division of Food Microbiology, Institute of Public Health, Ho Chi Minh City, Vietnam
| | - Chinh Dang Van
- Division of Food Microbiology, Institute of Public Health, Ho Chi Minh City, Vietnam
| | - Yuko Kumeda
- Research Center for Microorganism Control, Osaka Prefecture University, Sakai City, Osaka, Japan
| | - Atsushi Hase
- Faculty of Contemporary Human Life Science, Tezukayama University, Nara City, Nara, Japan
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Hoa TTT, Huyen HM, Nakayama T, Minh DTN, Hoang ON, Le Thi H, Thanh PN, Hoai PH, Yamaguchi T, Jinnai M, Do PN, Van CD, Kumeda Y, Hase A. Frequent contamination of edible freshwater fish with colistin-resistant Escherichia coli harbouring the plasmid-mediated mcr-1 gene. Mar Pollut Bull 2022; 184:114108. [PMID: 36166861 DOI: 10.1016/j.marpolbul.2022.114108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Revised: 08/09/2022] [Accepted: 09/03/2022] [Indexed: 06/16/2023]
Abstract
The threat of antimicrobial resistance is increasing. Microbial food contamination poses a serious public health risk; however, there are only a few studies on the prevalence of colistin-resistant Escherichia coli (COL-E) contamination in freshwater fish. This study aimed to characterise the antibiotic resistance genes and antibiotic susceptibility profiles of COL-E in freshwater fish in Vietnam. In total, 103 fish were collected and 63 COL-E were isolated. COL-E was investigated by genotyping mcr and AmpC/extended-spectrum β-lactamase (ESBL)-related genes. The results show that COL-E and AmpC/ESBL-producing COL-E were confirmed in 24.3 % and 14.6 % of the fish, respectively. Multiplex PCR for mcr-1-9 showed that all 63 COL-E harboured mcr-1, while mcr-3 was detected in 7.9 % of COL-E. The minimum inhibitory concentration of colistin ranged from 2 to 256 μg/mL. Meanwhile, antibiotic susceptibility results show that all COL-E were resistant to ampicillin, streptomycin, and chloramphenicol.
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Affiliation(s)
| | | | - Tatsuya Nakayama
- Graduate School of Integrated Sciences for Life, Hiroshima University.
| | | | | | - Hien Le Thi
- Institute of Public Health, Ho Chi Minh City, Viet Nam
| | | | | | | | - Michio Jinnai
- Department of Microbiology, Kanagawa Prefectural Institute of Public Health, Japan
| | | | | | - Yuko Kumeda
- Research Center for Microorganism Control, Osaka Prefecture University, Japan
| | - Atsushi Hase
- Faculty of Contemporary Human Life Science, Tezukayama University, Japan
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Nakayama T, Hoa TTT, Huyen HM, Yamaguchi T, Jinnai M, Minh DTN, Hoang ON, Thi HL, Thanh PN, Hoang Hoai P, Nguyen Do P, Van CD, Kumeda Y, Hase A. Isolation of carbapenem-resistant Enterobacteriaceae harbouring NDM-1, 4, 5, OXA48 and KPC from river fish in Vietnam. Food Control 2022. [DOI: 10.1016/j.foodcont.2021.108594] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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Nakayama T, Le Thi H, Thanh PN, Minh DTN, Hoang ON, Hoai PH, Yamaguchi T, Jinnai M, Do PN, Van CD, Kumeda Y, Hase A. Abundance of colistin-resistant Escherichia coli harbouring mcr-1 and extended-spectrum β-lactamase-producing E. coli co-harbouring bla CTX-M-55 or -65 with bla TEM isolates from chicken meat in Vietnam. Arch Microbiol 2022; 204:137. [PMID: 35032196 DOI: 10.1007/s00203-021-02746-0] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Revised: 12/15/2021] [Accepted: 12/28/2021] [Indexed: 11/26/2022]
Abstract
Although the spread of plasmid-mediated antibiotic-resistant bacteria is a public health concern, food contamination with plasmid-mediated antibiotic-resistant Escherichia coli in Vietnam has not been well investigated. This study aimed to describe the prevalence of colistin-resistant, carbapenem-resistant, and endemic blaCTX-M in extended-spectrum β-lactamase (ESBL) producing E. coli isolates. Colistin and carbapenem-resistant ESBL-producing E. coli were isolated from chickens in Vietnam and Japan. Colistin-resistant and AmpC/ESBL-producing E. coli (52% and 93%, respectively) were detected in chickens from Vietnam, in comparison to 52.7%, AmpC/ESBL-producing E. coli found in chicken from Japan. Carbapenem-resistant E. coli has not been isolated in Vietnam and Japan. Genotyping revealed that colistin-resistant E. coli harboured mcr-1, and most of the AmpC/ESBL-related genes were blaCTX-M-55 and blaCTX-M-65 together with blaTEM in Vietnamese chickens and blaCMY-2 in Japanese chickens. Multi-drug resistance analysis showed that ESBL-producing E. coli isolates had greater resistance to quinolones, streptomycin, and chloramphenicol than colistin-resistant E. coli isolates from Vietnam, suggesting the selection of multiple antibiotic resistance genes in ESBL-producing E. coli. In conclusion, colistin-resistant E. coli was detected in approximately half of the chicken samples, the majority of which harboured mcr-1. The high prevalence of ESBL-producing E. coli has remained constant in the last 5 years. The predominant blaCTX-M in ESBL-producing E. coli was blaCTX-M-55 or blaCTX-M-65, with the coexistence of blaTEM in Vietnam. These results can be implemented in monitoring systems to overcome the development of antimicrobial resistance.
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Affiliation(s)
- Tatsuya Nakayama
- Graduate School of Integrated Sciences for Life, Hiroshima University, 1-4-4 Kagamiyama, Higashi-Hiroshima, Hiroshima, Japan.
- Division of Biomedical Food Research, National Institute of Health Sciences, Kawasaki, Kanagawa, Japan.
| | - Hien Le Thi
- Institute of Public Health, Ho Chi Minh City, Vietnam
| | | | | | | | | | - Takahiro Yamaguchi
- Department of Microbiology, Osaka Institute of Public Health, Higashinari-ku, Osaka, Japan
| | - Michio Jinnai
- Department of Microbiology, Kanagawa Prefecture Institute of Public Health, Chigasaki, Kanagawa, Japan
| | | | | | - Yuko Kumeda
- Research Center for Microorganism Control, Osaka Prefecture University, Sakai, Osaka, Japan
| | - Atsushi Hase
- Faculty of Contemporary Human Life Science, Tezukayama University, Nara, Japan
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