Design of a CMOS image sensor pixel with embedded polysilicon nano-grating for near-infrared imaging enhancement

Complementary metal-oxide semiconductor (CMOS) image sensor sensitivity in the near-infrared spectrum is limited by the absorption length in silicon. To deal with that limitation, we evaluate the implementation of a polysilicon nano-grating inside a pixel, at the transistor gate level of a 90 nm standard CMOS process, through opto-electrical simulations. The studied pixel structure involves a polysilicon nano-grating, designed with the fabrication layer of the transistor gate, which does not require any modifications in the process flow. The diffraction effect of the nano-grating increases the length of the light path in the photosensitive area and thus increases the photoelectric conversion efficiency. The nano-grating is integrated in combination with deep trench isolations to reduce cross talk between pixels. Coupled optical and electrical simulations report 33% external quantum efficiency improvement and 7% cross talk reduction at 850 nm.

Parallel evolution of morphological traits and body shape in littoral and pelagic brook charr, Salvelinus fontinalis, along a gradient of interspecific competition

The parallel evolution of similar ecotypes in response to comparable environmental conditions is believed to reveal the importance of divergent selection in phenotypic diversifying processes. Systems characterized by the presence of multiple replicate populations expressing resource polymorphism thus provide an ideal opportunity to address the occurrence and factors affecting the parallel evolution of ecotypes. Previous studies have shown that brook charr (Salvelinus fontinalis) exhibit resource polymorphism in some Canadian Shield lakes, where a littoral ecotype feeds mainly on zoobenthos and a pelagic ecotype feeds mostly on zooplankton. Using morphological traits and geometric morphometric analyses on 18 native brook charr populations, we explicitly tested (i) whether brook charr ecotypes show parallel evolution across populations (i.e. the same morphological traits discriminate ecotypes among lakes) and (ii) whether interspecific competition decreases the amplitude of morphological differentiation between ecotypes, if any, because brook charr experience some level of competitive exclusion from the littoral habitat in the presence of creek chub or white sucker. We observed a low level of parallel evolution, where the littoral ecotype was overall stouter with longer fins and smaller eyes than the pelagic ecotype. Interspecific competition had no clear impacts on the amplitude of morphological differentiation. We also observed that inter-lake morphological differences are greater than between ecotypes within lakes, suggesting an important effect of local environmental factors on population morphology. Early-stage of diversification as well as phenotypic plasticity and morphological integration could explain why resource polymorphism is still subtle in brook charr populations.

Extraction of acceptor concentration map from EBIC experiments

Controlling two dimensional doping distributions is an important benefit in order to check processed substrates or specific devices. To achieve this purpose, a new methodology is proposed in order to obtain qualitative maps of acceptor concentration from one EBIC image. Analytical models are used to help in defining the best experimental condition and to check the validity of the approach, and a TCAD simulation is performed on a realistic structure and shows promising results. Then, a measurement is carried out on a device and the epitaxy gradient is clearly visible, as well as the presence of Pwell layers.

Does ecological release from distantly related species affect phenotypic divergence in brook charr?

Ecological opportunity occurs when a resource becomes available through a decrease of interspecific competition and another species colonizes the vacant niche through phenotypic plasticity and intraspecific competition. Brook charr exhibit a resource polymorphism in some Canadian Shield lakes, where a littoral ecotype feeds mainly on zoobenthos and a pelagic ecotype feeds mostly on zooplankton. The objectives of this study were to test that (i) resource polymorphism is common in these brook charr populations, (ii) the presence creek chub and white sucker, two introduced species competing with brook charr for littoral resources, will decrease the phenotypic divergence between the two brook charr ecotypes, and (iii) the ecological release from introduced species will increase population and/or individual niche widths in brook charr. The study was based on 27 lakes and five indicators of resource use (stomach content, liver δ¹³C, muscle astaxanthin concentration, pyloric caecum length, and gill raker length). Our results indicate that within-lake differences in resource use by both ecotypes are common and stable through time. When facing interspecific competition, both littoral and pelagic brook charr incorporated more pelagic prey into their diet but maintained the amplitude of their differences in resource use, which contradicts our second prediction. Finally, we did not find any significant effect of introduced species on population and individual niche widths of brook charr. We suggest that the difference in feeding mode among distantly related competitors could prevent the complete exclusion of a species from a given niche and explain the lack of response to the ecological release.

Linking fisheries to land use: How anthropogenic inputs from the watershed shape fish habitat quality

Aquatic ecosystems are increasingly threatened by anthropogenic stressors, both at local and larger scales. For instance, runoff from intensively cultivated areas leads to higher nutrient and sediment concentrations deteriorating water quality, which potentially trigger trophic state changes. Unfortunately, we have a poor understanding of the complex relationships linking water quality degradation and different ecosystem components. Here we analyze the long-term cascading effects of several anthropogenic stressors on both submerged aquatic vegetation (SAV) and the key traits of an exploited yellow perch (Perca flavescens, YP) population from the watershed of Lake Saint-Pierre - the largest fluvial lake of the St. Lawrence River (Québec, Canada). Lake Saint-Pierre drains one of the most impacted watersheds in Eastern Canada and had sustained a YP fishery (worth up to 10 M$ CAN/year) until the population collapsed in the mid-1990s. SAV abundance has declined since the 1980s, partially overlapping with the YP collapse. Within a structural equation modeling framework, we tested the links between changes in both SAV abundance and the YP fishery with abiotic stressors acting at both local and larger scales. Our results show that both SAV and YP declines are causally associated with anthropogenic nutrient and sediment loadings from the watershed. The decline of YP landings is also explained by a reduction in SAV abundance and YP juvenile growth, mainly caused by a sharp decrease in water transparency over the last decades. These results suggest a causal association between environmental degradation due to nutrients and sediments and different components of the trophic aquatic network. Such an integrative approach is crucial for the development of management strategies that consider cultivated lands and aquatic systems as a continuum rather than separate compartments. SAV restoration is thus a critical feature contributing to water depuration and promoting the recovery of fish populations threatened by habitat degradation.

Electrical Characterization of the Backside Interface on BSI Global Shutter Pixels with Tungsten-Shield Test Structures on CDTI Process

A new methodology is presented using well known electrical characterization techniques on dedicated single devices in order to investigate backside interface contribution to the measured pixel dark current in BSI CMOS image sensors technologies. Extractions of interface states and charges within the dielectric densities are achieved. The results show that, in our case, the density of state is not directly the source of dark current excursions. The quality of the passivation of the backside interface appears to be the key factor. Thanks to the presented new test structures, it has been demonstrated that the backside interface contribution to dark current can be investigated separately from other sources of dark current, such as the frontside interface, DTI (deep trench isolation), etc.

Leakage Current Non-Uniformity and Random Telegraph Signals in CMOS Image Sensor Floating Diffusions Used for In-Pixel Charge Storage

The leakage current non-uniformity, as well as the leakage current random and discrete fluctuations sources, are investigated in pinned photodiode CMOS image sensor floating diffusions. Different bias configurations are studied to evaluate the electric field impacts on the FD leakage current. This study points out that high magnitude electric field regions could explain the high floating diffusion leakage current non-uniformity and its fluctuation with time called random telegraph signal. Experimental results are completed with TCAD simulations allowing us to further understand the role of the electric field in the FD leakage current and to locate a high magnitude electric field region in the overlap region between the floating diffusion implantation and the transfer gate spacer.

CMOS Image Sensors and Plasma Processes: How PMD Nitride Charging Acts on the Dark Current

Plasma processes are known to be prone to inducing damage by charging effects. For CMOS image sensors, this can lead to dark current degradation both in value and uniformity. An in-depth analysis, motivated by the different degrading behavior of two different plasma processes, has been performed in order to determine the degradation mechanisms associated with one plasma process. It is based on in situ plasma-induced charge characterization techniques for various dielectric stack structures (dielectric nature and stack configuration). A degradation mechanism is proposed, highlighting the role of ultraviolet (UV) light from the plasma in creating an electron hole which induces positive charges in the nitride layer at the wafer center, and negative ones at the edge. The trapped charges de-passivate the SiO₂/Si interface by inducing a depleted interface above the photodiode, thus emphasizing the generation of dark current. A good correlation between the spatial distribution of the total charges and the value of dark current has been observed.

The ecology of sexual dimorphism in size and shape of the freshwater blenny Salaria fluviatilis

Sexual selection is considered the major cause of sexual dimorphism, but recent observations suggest that natural selection may play a more important role in the evolution of sex differentiation than previously recognized. Therefore, studying the trade-offs between natural selection and sexual selection is crucial to a better understanding of the ecology underlying the evolution of sexual dimorphism. The freshwater blenny Salaria fluviatilis, a fish inhabiting lakes and rivers around the Mediterranean Sea, displays strong sexual dimorphism in size, shape, and behavior (i.e., larger body and head size for males and higher swimming requirements for females during the reproductive period). We tested for differences in sexual dimorphism in size and shape between the populations from lake and river habitats with the goal of identifying the trade-offs between natural and sexual selection that underlie variations in sexual dimorphism in this species. Our results show i) differences in sexual size dimorphism (SSizeD) in accordance to Rensch's rule (i.e., larger individuals in rivers associated with higher SSizeD), and ii) a decrease in shape differentiation between males and females in lake populations. Together, this suggests that the different environmental conditions between lake and river habitats (e.g., resource limitations, predation pressure, water velocity) affect the relative importance of sexual selection in the display of sexual dimorphism within the species. This study highlights the importance of considering the environmental conditions to which populations are exposed to better understand the ecology underlying the evolution of sexual dimorphism.

Evaluation of overpressure prediction models for air blast above the triple point

The increase of blast exposures leads to the need for better assessment of the blast threat. Empirical models describing the blast propagation in ideal conditions as free-field or surface detonations are commonly employed, but in some configurations the ground-reflected shock should be treated explicitly. Empirical models permit the prediction of the blast characteristics with the ground-reflected shock. The present study uses some original experimental data to evaluate the accuracy of the predicted overpressure with time regarding the reflected shock characteristics. Three methods are tested. The first method, called method of images (MOI) and linearly adding a virtual ground-symmetrical source blast to the free-field blast, is quick but lacks accuracy regarding the reflected shock characteristics. The second method, based on the LOAD_BLAST_ENHANCED function of the commercial LS-DYNA framework, better captures the reflected shock compared to the MOI, but the overall differences with experimental data are of the same order of magnitude as for the MOI. An original fit is introduced, based on standard physical parameters. The accuracy of this fit on the reflected shock characteristics, and the better match with the overall overpressure time series, shows its potential as a new empirical blast predicting tool.

Integration of nanostructured planar diffractive lenses dedicated to near infrared detection for CMOS image sensors

This paper deals with the integration of metallic and dielectric nanostructured planar lenses into a pixel from a silicon based CMOS image sensor, for a monochromatic application at 1.064 μm. The first is a Plasmonic Lens, based on the phase delay through nanoslits, which has been found to be hardly compatible with current CMOS technology and exhibits a notable metallic absorption. The second is a dielectric Phase-Fresnel Lens integrated at the top of a pixel, it exhibits an Optical Efficiency (OE) improved by a few percent and an angle of view of 50°. The third one is a metallic diffractive lens integrated inside a pixel, which shows a better OE and an angle of view of 24°. The last two lenses exhibit a compatibility with a spectral band close to 1.064 μm.

Shape plasticity in response to water velocity in the freshwater blenny Salaria fluviatilis

A non-random association between an environmental factor and a given trait could be explained by directional selection (genetic determinism) and by phenotypic plasticity (environmental determinism). A previous study showed a significant relationship between morphology and water velocity in Salaria fluviatilis that conformed to functional expectations. The objective of this study was to test whether this relationship could be explained by phenotypic plasticity. Salaria fluviatilis from a Corsican stream were placed in four experimental channels with different water velocities (0, 10, 20 and 30 cm s(-1)) to test whether there was a morphological response associated with this environmental factor. After 28 days, fish shape changed in response to water velocity without any significant growth. Fish in higher water velocities exhibited a more slender body shape and longer anal and caudal fins. These results indicate a high degree of morphological plasticity in riverine populations of S. fluviatilis and suggest that the previous relationship between morphology and water velocity observed in the field may largely be due to an environmental determinism.

Pixel pitch and particle energy influence on the dark current distribution of neutron irradiated CMOS image sensors

The dark current produced by neutron irradiation in CMOS Image Sensors (CIS) is investigated. Several CIS with different photodiode types and pixel pitches are irradiated with various neutron energies and fluences to study the influence of each of these optical detector and irradiation parameters on the dark current distribution. An empirical model is tested on the experimental data and validated on all the irradiated optical imagers. This model is able to describe all the presented dark current distributions with no parameter variation for neutron energies of 14 MeV or higher, regardless of the optical detector and irradiation characteristics. For energies below 1 MeV, it is shown that a single parameter has to be adjusted because of the lower mean damage energy per nuclear interaction. This model and these conclusions can be transposed to any silicon based solid-state optical imagers such as CIS or Charged Coupled Devices (CCD). This work can also be used when designing an optical imager instrument, to anticipate the dark current increase or to choose a mitigation technique.

Heat transfer in fish: are short excursions between habitats a thermoregulatory behaviour to exploit resources in an unfavourable thermal environment?

Temperature is the primary environmental factor affecting physiological processes in ectotherms. Heat-transfer models describe how the fish's internal temperature responds to a fluctuating thermal environment. Specifically, the rate coefficient (k), defined as the instantaneous rate of change in body temperature in relation to the difference between ambient and body temperature, summarizes the combined effects of direct thermal conduction through body mass, passive convection (intracellular and intercellular fluids) and forced convective heat transfer (cardiovascular system). The k-coefficient is widely used in fish ecology to understand how body temperature responds to changes in water temperature. The main objective of this study was to estimate the k-coefficient of brook charr equipped with internal temperature-sensitive transmitters in controlled laboratory experiments. Fish were first transferred from acclimation tanks (10°C) to tanks at 14, 19 or 23°C (warming experiments) and were then returned to the acclimation tanks (10°C; cooling experiments), thus producing six step changes in ambient temperature. We used non-linear mixed models to estimate the k-coefficient. Model comparisons indicated that the model incorporating the k-coefficient as a function of absolute temperature difference (dT: 4, 9 and 13°C) best described body temperature change. By simulating body temperature in a heterogeneous thermal environment, we provide theoretical predictions of maximum excursion duration between feeding and resting areas. Our simulations suggest that short (i.e. <60 min) excursions could be a common thermoregulatory behaviour adopted by cold freshwater fish species to sustain body temperature below a critical temperature threshold, enabling them to exploit resources in an unfavourable thermal environment.

Mitigating fisheries-induced evolution in lacustrine brook charr (Salvelinus fontinalis) in southern Quebec, Canada

Size-selective mortality caused by fishing can impose strong selection on harvested fish populations, causing evolution in important life-history traits. Understanding and predicting harvest-induced evolutionary change can help maintain sustainable fisheries. We investigate the evolutionary sustainability of alternative management regimes for lacustrine brook charr (Salvelinus fontinalis) fisheries in southern Canada and aim to optimize these regimes with respect to the competing objectives of maximizing mean annual yield and minimizing evolutionary change in maturation schedules. Using a stochastic simulation model of brook charr populations consuming a dynamic resource, we investigate how harvesting affects brook charr maturation schedules. We show that when approximately 5% to 15% of the brook charr biomass is harvested, yields are high, and harvest-induced evolutionary changes remain small. Intensive harvesting (at approximately >15% of brook charr biomass) results in high average yields and little evolutionary change only when harvesting is restricted to brook charr larger than the size at 50% maturation probability at the age of 2 years. Otherwise, intensive harvesting lowers average yield and causes evolutionary change in the maturation schedule of brook charr. Our results indicate that intermediate harvesting efforts offer an acceptable compromise between avoiding harvest-induced evolutionary change and securing high average yields.

Morphological variation in the freshwater blenny Salaria fluviatilis from Corsican rivers: adaptive divergence, phenotypic plasticity or both?

The first goal of this study was to determine whether morphological variation in the freshwater blenny Salaria fluviatilis results in spatially structured populations distributed around Corsica, France, which would suggest genetically differentiated populations through reproductive isolation by distance. The second goal was to determine whether some morphological traits are related to water velocity, one of the most contrasting habitat characteristics in these rivers, which would suggest an adaptation to local conditions. The results showed that the morphology of S. fluviatilis differed among the three main geographic areas studied in Corsica and that geographically distant populations of S. fluviatilis were less similar morphologically and genetically than close ones. The results also indicated that the morphological differences among populations conformed to functional expectations. Overall, the results suggest that the morphological variation of S. fluviatilis from Corsican rivers is an adaptive response to water velocity and that these populations are in a process of reproductive isolation by distance.

Smart CMOS image sensor for lightning detection and imaging

We present a CMOS image sensor dedicated to lightning detection and imaging. The detector has been designed to evaluate the potentiality of an on-chip lightning detection solution based on a smart sensor. This evaluation is performed in the frame of the predevelopment phase of the lightning detector that will be implemented in the Meteosat Third Generation Imager satellite for the European Space Agency. The lightning detection process is performed by a smart detector combining an in-pixel frame-to-frame difference comparison with an adjustable threshold and on-chip digital processing allowing an efficient localization of a faint lightning pulse on the entire large format array at a frequency of 1 kHz. A CMOS prototype sensor with a 256×256 pixel array and a 60 μm pixel pitch has been fabricated using a 0.35 μm 2P 5M technology and tested to validate the selected detection approach.

Inferring processes from spatial patterns: the role of directional and non-directional forces in shaping fish larvae distribution in a freshwater lake system

Larval dispersal is a crucial factor for fish recruitment. For fishes with relatively small-bodied larvae, drift has the potential to play a more important role than active habitat selection in determining larval dispersal; therefore, we expect small-bodied fish larvae to be poorly associated with habitat characteristics. To test this hypothesis, we used as model yellow perch (Perca flavescens), whose larvae are among the smallest among freshwater temperate fishes. Thus, we analysed the habitat association of yellow perch larvae at multiple spatial scales in a large shallow fluvial lake by explicitly modelling directional (e.g. due to water currents) and non-directional (e.g. due to aggregation) spatial patterns. This allowed us to indirectly assess the relative roles of drift (directional process) and potential habitat choice on larval dispersal. Our results give weak support to the drift hypothesis, whereas yellow perch show a strong habitat association at unexpectedly small sizes, when compared to other systems. We found consistent non-directional patterns in larvae distributions at both broad and medium spatial scales but only few significant directional components. The environmental variables alone (e.g. vegetation) generally explained a significant and biologically relevant fraction of the variation in fish larvae distribution data. These results suggest that (i) drift plays a minor role in this shallow system, (ii) larvae display spatial patterns that only partially covary with environmental variables, and (iii) larvae are associated to specific habitats. By suggesting that habitat association potentially includes an active choice component for yellow perch larvae, our results shed new light on the ecology of freshwater fish larvae and should help in building more realistic recruitment models.

Vulnerability of CMOS image sensors in Megajoule Class Laser harsh environment

CMOS image sensors (CIS) are promising candidates as part of optical imagers for the plasma diagnostics devoted to the study of fusion by inertial confinement. However, the harsh radiative environment of Megajoule Class Lasers threatens the performances of these optical sensors. In this paper, the vulnerability of CIS to the transient and mixed pulsed radiation environment associated with such facilities is investigated during an experiment at the OMEGA facility at the Laboratory for Laser Energetics (LLE), Rochester, NY, USA. The transient and permanent effects of the 14 MeV neutron pulse on CIS are presented. The behavior of the tested CIS shows that active pixel sensors (APS) exhibit a better hardness to this harsh environment than a CCD. A first order extrapolation of the reported results to the higher level of radiation expected for Megajoule Class Laser facilities (Laser Megajoule in France or National Ignition Facility in the USA) shows that temporarily saturated pixels due to transient neutron-induced single event effects will be the major issue for the development of radiation-tolerant plasma diagnostic instruments whereas the permanent degradation of the CIS related to displacement damage or total ionizing dose effects could be reduced by applying well known mitigation techniques.

Fish dispersal in fragmented landscapes: a modeling framework for quantifying the permeability of structural barriers

Dispersal is a key determinant of the spatial distribution and abundance of populations, but human-made fragmentation can create barriers that hinder dispersal and reduce population viability. This study presents a modeling framework based on dispersal kernels (modified Laplace distributions) that describe stream fish dispersal in the presence of obstacles to passage. We used mark-recapture trials to quantify summer dispersal of brook trout (Salvelinus fontinalis) in four streams crossed by a highway. The analysis identified population heterogeneity in dispersal behavior, as revealed by the presence of a dominant sedentary component (48-72% of all individuals) characterized by short mean dispersal distance (<10 m), and a secondary mobile component characterized by longer mean dispersal distance (56-1086 m). We did not detect evidence of barrier effects on dispersal through highway crossings. Simulation of various plausible scenarios indicated that detectability of barrier effects was strongly dependent on features of sampling design, such as spatial configuration of the sampling area, barrier extent, and sample size. The proposed modeling framework extends conventional dispersal kernels by incorporating structural barriers. A major strength of the approach is that ecological process (dispersal model) and sampling design (observation model) are incorporated simultaneously into the analysis. This feature can facilitate the use of prior knowledge to improve sampling efficiency of mark-recapture trials in movement studies. Model-based estimation of barrier permeability and its associated uncertainty provides a rigorous approach for quantifying the effect of barriers on stream fish dispersal and assessing population dynamics of stream fish in fragmented landscapes.

Behavioural responses of prey fishes to habitat complexity and predation risk induce bias in minnow trap catches

The effects of predation risk and habitat complexity on the efficiency of minnow traps to catch northern redbelly dace Chrosomus eos in laboratory experiments were investigated. Trap efficiency significantly decreased in the presence of vegetation and predators. These results suggest that the various antipredator behaviours used by prey fishes can affect trap efficiency.

Does predation risk influence habitat use by northern redbelly dace Phoxinus eos at different spatial scales?

This study investigated the relationship between spatial variations in predation risk and abundance of northern redbelly dace Phoxinus eos at both macroscale (littoral v. pelagic zones) and microscale (structured v. open water habitats in the littoral zone) of Canadian Shield lakes. Minnow traps were placed in both structured and open water habitats in the littoral zone of 13 Canadian Shield lakes, and estimates of the relative predation risk of P. eos in both the pelagic and the littoral zones were obtained from tethering experiments. Results showed that (1) the mean abundance of P. eos in the littoral zone was positively correlated with the relative predation risk in the pelagic zone, (2) P. eos preferentially used structured over open water habitats in the littoral zone and (3) this preference was not related to the relative predation risk in the littoral zone but decreased as the relative predation risk increased in the pelagic zone. At the lake level, these results support the hypothesis that P. eos enter the littoral zone to avoid pelagic piscivores. At the littoral zone level, the results do not necessarily contradict the widely accepted view that P. eos preferentially use structured over open habitats to reduce their predation risk, but suggest that flexibility in antipredator tactics (e.g. shelter use v. shoaling) could explain the spatial distribution of P. eos between structured and open water habitats.

Synthèse des impacts écologiques des feux et des coupes forestières sur les lacs de l'écozone boréale au Québec

Cet article présente une première synthèse comparative des impacts des feux et des coupes forestières sur la qualité des eaux et les communautés aquatiques des lacs de l'écozone boréale de l'est du Canada. La recherche a été réalisée de 1996 à 1998 dans le cadre d'un projet du Réseau de centre d'excellence sur la gestion durable des forêts (RCE-GDF) et porte sur 38 lacs du Bouclier Canadien du Québec. Les changements dans la qualité de l'eau ainsi que dans la diversité, la biomasse et la structure des communautés de plancton et de poissons ont été suivis pendant trois ans dans 20 lacs dont les bassins versants étaient non perturbés, dans 9 lacs qui avaient subit des coupes forestières et dans 9 lacs qui avaient subit des feux de forêt.

Notre étude montre que les feux et les coupes ont des impacts significatifs qui diffèrent selon le type de perturbation. En général, les lacs affectés par les coupes et les feux ont des concentrations de phosphore 2 à 3 fois plus élevées que les lacs de référence. Toutefois, les lacs affectés par les feux montrent des concentrations en nitrates beaucoup plus élevées tandis que les lacs affectés par les coupes sont moins transparents et ont des eaux plus colorées, très riches en carbone organique dissous. Les feux et les coupes affectent aussi de façon différente la minéralisation des eaux et les concentrations des ions majeurs. Les feux et les coupes n'ont pas d'effet sur la biodiversité des communautés planctoniques, sauf dans les lacs ayant un grand bassin versant et plus de 40 % de perturbation. Aucune différence n'a été observée entre les lacs de référence et les lacs perturbés au niveau de l'occurrence, l'abondance et la croissance des espèces de poissons. En revanche, les feux et les coupes affectent la production et la structure des communautés aquatiques. Dans les lacs affectés par les feux, l'enrichissement en azote et phosphore provoque une hausse de la concentration en chlorophylle a, et de la biomasse du phytoplancton et du limnoplancton (seston > 53 µm), en particulier des diatomées, des rotifères et des gros crustacés, pendant deux à trois années après les feux. En revanche, dans les lacs affectés par les coupes, l'enrichissement en phosphore n'entraîne qu'une augmentation très faible et limitée à un an de la biomasse des algues et pas de changement dans les biomasses du limnoplancton, en raison de la forte couleur et de la transparence réduite des eaux, qui limite la production biologique. Les coupes ont un impact négatif sur les copépodes calanoïdes, un groupe de zooplancton caractéristique des lacs oligotrophes et transparents. Une diminution significative de la proportion des individus de petite taille a été observée chez les populations de perchaude et de meunier noir des lacs perturbés (lacs de coupe et de feux formant un seul groupe). Les impacts observés dans la qualité des eaux et la production du plancton augmentent avec l'importance relative des perturbations au niveau du bassin versant. Cependant, la variabilité dans les caractéristiques des bassins versants et des lacs, en particulier le rapport de drainage et le temps de résidence des eaux, a des effets confondants sur les réponses des écosystèmes lacustres aux perturbations par les feux et les coupes.

The influence of swimming demand on phenotypic plasticity and morphological integration: a comparison of two polymorphic charr species

In northern freshwater lakes, several fish species have populations composed of discrete morphs, usually involving a divergence between benthic and limnetic morphs. Although it has been suggested that swimming demand plays an important role in morphological differentiation, thus influencing habitat selection, it is unclear how it affects reaction norms, patterns in character correlation, and levels of morphological integration. We examined whether swimming demand could induce morphological plasticity in the directions expected under divergent habitat selection, and evaluated its influence on the morphological integration in Arctic charr ( Salvelinus alpinus) and brook charr ( S. fontinalis), two congeneric species exhibiting conspicuous and subtle resource polymorphism, respectively. We found that changes in morphology were induced by differential swimming demands in both species. The length of the pectoral fin was the character that responded most strongly according to the predicted morphological expectations under divergent habitat selection. High levels of morphological plasticity, relatively low levels of integration, and differences found in the morphological correlation structure among water velocity treatments suggest that constraints on morphological change are unlikely in either species, thus allowing great potential for phenotypic flexibility in both species. The magnitude of character integration, however, was larger for Arctic charr than for brook charr. This latter result is discussed in the light of the differences in the level of polymorphism between the two species in the wild. The results of the present study indicate that swimming demand alone may not be sufficient to generate the polymorphism encountered in nature. Given that both diet and swimming demands can induce morphological changes, it would be important to conduct experiments targeting the interaction between the morphological modules related to trophic and swimming demands.

Sensitivity of northern redbelly dace, Phoxinus eos, to chemical alarm cues

The northern redbelly dace, Phoxinus eos (Cope, 1862), is subject to predation by brook trout, Salvelinus fontinalis (Mitchill, 1814), in Canadian Shield lakes, particularly when individuals migrate to the pelagic zone at sunset to feed on zooplankton and fish shoals break up into single individuals. The objectives of the present study were to (i) determine whether northern redbelly dace react to skin extracts from conspecifics and thus potentially use chemical alarms to detect predators in nature, (ii) characterize the fright reaction in northern redbelly dace under different concentrations of alarm substance, and (iii) estimate the active space of the alarm substance in this species. Northern redbelly dace responded to skin extracts of conspecifics with a series of antipredator behaviours. The dace moved closer to the substrate and away from the area where the alarm substance was injected, increased both the cohesion and polarization of their schools, and performed more dashing and freezing behaviours. The observed responses were closely correlated with the concentration of the skin extract solution, suggesting that individuals could use this sensitivity to different concentrations of alarm substance to estimate the risk of predation in nature. The dilution experiment allowed us to estimate that 1 cm2 of northern redbelly dace skin contains enough alarm substance to generate a response of individuals in 110 558 L of water, which corresponds to a cube with sides of approximately 4.8 m. Indirect evidence suggests that the northern redbelly dace could use chemical alarm cues to assess the risk of predation by brook trout in nature.

Relationship between individual variation in morphological characters and swimming costs in brook charr (Salvelinus fontinalis) and yellow perch (Perca flavescens)

The objective of this study was to examine if individual variation in morphological characters is related to swimming costs in wild and domestic brook charr, and in wild yellow perch. Our results indicate that absolute swimming cost was higher in wild and domestic brook charr individuals having a stout body shape, and these individuals are therefore less efficient swimmers. These results are consistent with field observations that described relationships between individual variation in morphology and habitat use in salmonids. Further analyses indicated that standard metabolic rates were higher in individuals having a stout body shape, and that net swimming cost was not related to body shape. Accordingly, the higher swimming cost of stout individuals is probably an indirect consequence of an increase in standard metabolic rate. In wild yellow perch, absolute and net swimming costs were higher in individuals having a stout body shape and a low aspect caudal fin,and standard metabolic rate was not related to body shape. Therefore, in contrast to brook charr, individual variation in the swimming cost of yellow perch appears to be related to morphological characters that affect drag and thrust forces, which is consistent with previously published inter-specific observations.

Intracochlear acoustic pressure measurements: transfer functions of the middle ear and cochlear mechanics

Direct intracochlear acoustic pressure recordings (from 20 to 20,000 Hz) are used to measure the middle-ear transfer functions (forward and reverse) and to better understand the cochlear mechanics in the guinea pig. In the forward direction, the middle-ear transfer function is strongly dependent on the frequency and presents a maximum of +30 dB at 1,000 Hz (bulla open). In the reverse direction, the middle-ear transfer function looks like an ideal reverse middle-ear pressure transformer with -35 dB gain and 0 degrees phase lag from 20 to 8,000 Hz (bulla open, closed ear canal). Passive cochlear mechanics is studied with the help of intracochlear pressure measurements and differential cochlear microphonic potential recordings in the different turns.

Direct evidence of cubic difference tone propagation by intracochlear acoustic pressure measurements in the guinea-pig

The fine tuning mechanisms involved in the normal processing of sound in the cochlea are non-linear, hence combination tones are generated inside the cochlea when a pair of low-level pure tones with neighbouring frequencies f1 and f2 is used as a stimulus. Their detection as sounds in the ear canal proves that they undergo backward propagation in the cochlea and through the middle ear, and the non-invasive measurement of the combination tone at 2f1-f2, called the cubic difference tone (CDT), has become a routine method of monitoring cochlear function. In order to gain information on the hypothetical places where CDTs are generated, on their intracochlear levels and propagation velocities, direct measurements of CDT pressure waves were carried out in scala vestibuli and tympani of the first and second turn of the guinea-pig cochlea. Cubic difference tones at 2f1-f2 varied from 0.75 to 9 kHz and were measured with a miniature piezoresistive transducer. Its high sensitivity allowed the detection of CDTs whenever their levels exceeded 5 dB SPL in the ear canal, i.e. 40 dB SPL (re: 20 microPa) inside the cochlea. The levels of CDTs were similar in scala vestibuli of the first and second turn. Phase comparisons between measurements at 2f1-f2 in the first and second turn allowed determination of the place where the CDT phase was minimum. It provided an estimation of the generation site of the CDT, which appeared to be close to the place tuned to f2 for stimulus levels lower than 70 dB SPL. Forward and backward travel times from one turn to the other were assessed at several frequencies, and both values were shorter than 0.2 ms. In contrast, the overall 'round-trip' delay of CDTs, measured in the ear canal, was about five times larger, suggesting that local filtering processes rather than propagation delays account for the overall CDT delay.