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Leone S, Srivastava A, Herrero-Ruiz A, Hummel B, Tittel L, Campalastri R, Aprile-Garcia F, Tan JH, Rawat P, Andersson P, Willis AE, Sawarkar R. HSP70 binds to specific non-coding RNA and regulates human RNA polymerase III. Mol Cell 2024; 84:687-701.e7. [PMID: 38266641 DOI: 10.1016/j.molcel.2024.01.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 10/20/2023] [Accepted: 01/02/2024] [Indexed: 01/26/2024]
Abstract
Molecular chaperones are critical for protein homeostasis and are implicated in several human pathologies such as neurodegeneration and cancer. While the binding of chaperones to nascent and misfolded proteins has been studied in great detail, the direct interaction between chaperones and RNA has not been systematically investigated. Here, we provide the evidence for widespread interaction between chaperones and RNA in human cells. We show that the major chaperone heat shock protein 70 (HSP70) binds to non-coding RNA transcribed by RNA polymerase III (RNA Pol III) such as tRNA and 5S rRNA. Global chromatin profiling revealed that HSP70 binds genomic sites of transcription by RNA Pol III. Detailed biochemical analyses showed that HSP70 alleviates the inhibitory effect of cognate tRNA transcript on tRNA gene transcription. Thus, our study uncovers an unexpected role of HSP70-RNA interaction in the biogenesis of a specific class of non-coding RNA with wider implications in cancer therapeutics.
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Affiliation(s)
- Sergio Leone
- MRC Toxicology Unit, University of Cambridge, Cambridge CB21QR, UK.
| | | | | | - Barbara Hummel
- Max Planck Institute of Immunobiology and Epigenetics, Freiburg 79108, Germany
| | - Lena Tittel
- Max Planck Institute of Immunobiology and Epigenetics, Freiburg 79108, Germany
| | | | | | - Jun Hao Tan
- MRC Toxicology Unit, University of Cambridge, Cambridge CB21QR, UK
| | - Prashant Rawat
- Max Planck Institute of Immunobiology and Epigenetics, Freiburg 79108, Germany
| | - Patrik Andersson
- Safety Innovation, Clinical Pharmacology and Safety Sciences, AstraZeneca R&D, Gothenburg 43183, Sweden
| | - Anne E Willis
- MRC Toxicology Unit, University of Cambridge, Cambridge CB21QR, UK
| | - Ritwick Sawarkar
- MRC Toxicology Unit, University of Cambridge, Cambridge CB21QR, UK; Max Planck Institute of Immunobiology and Epigenetics, Freiburg 79108, Germany.
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2
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Dey S, Ghosh P, Rawat P, Choudhary N, Rai A, Meena R, Mandal TK, Mao J, Jia S, Rastogi N, Sharma SK, Sarkar S. Optical source apportionment of aqueous brown carbon (BrC) on a daytime and nighttime basis in the eastern Indo-Gangetic Plain (IGP) and insights from 13C and 15N isotopic signatures. Sci Total Environ 2023:164872. [PMID: 37343876 DOI: 10.1016/j.scitotenv.2023.164872] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 06/01/2023] [Accepted: 06/11/2023] [Indexed: 06/23/2023]
Abstract
This study reports day-night and seasonal variations of aqueous brown carbon (BrCaq) and constituent humic-like substances (HULIS) (neutral and acidic HULIS: HULIS-n and HULIS-a) from the eastern Indo-Gangetic Plain (IGP) of India during 2019-2020. This is followed by the application of the receptor model positive matrix factorization (PMF) for optical source apportionment of BrCaq and the use of stable isotopic ratios (δ13C and δ15N) to understand atmospheric processing. Nighttime BrCaq absorption and mass absorption efficiencies (MAE) were enhanced by 40-150 % and 50-190 %, respectively, compared to the daytime across seasons, possibly as a combined effect from daytime photobleaching, dark-phase secondary formation, and increased nighttime emissions. MAE250 nm/MAE365 nm (i.e., E2/E3) ratios and Angstrom Exponents revealed that BrCaq and HULIS-n were relatively more aromatic and conjugated during the biomass burning-dominated periods while BrCaq and HULIS-a were comprised mostly of non-conjugated aliphatic structures from secondary processes during the photochemistry-dominated summer. The relative radiative forcing of BrCaq with respect to elemental carbon (EC) was 10-12 % in the post-monsoon and winter in the 300-400 nm range. Optical source apportionment using PMF revealed that BrCaq absorption at 300, 365 and 420 nm wavelengths in the eastern IGP is mostly from biomass burning (60-75 %), followed by combined marine and fossil fuel-derived sources (24-31 %), and secondary processes (up to 10 %). Source-specific MAEs at 365 nm were estimated to be the highest for the combined marine and fossil fuel source (1.34 m2 g-1) followed by biomass burning (0.78 m2 g-1) and secondary processing (0.13 m2 g-1). Finally, δ13C and δ15N isotopic analysis confirmed the importance of summertime photochemistry and wintertime NO3--dominated chemistry in constraining BrC characteristics. Overall, the quantitative apportionment of BrCaq sources and processing reported here can be expected to lead to targeted source-specific measurements and a better understanding of BrC climate forcing in the future.
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Affiliation(s)
- Supriya Dey
- School of Civil and Environmental Engineering, Indian Institute of Technology (IIT) Mandi, Kamand, Himachal Pradesh 175075, India
| | - Pronoy Ghosh
- School of Civil and Environmental Engineering, Indian Institute of Technology (IIT) Mandi, Kamand, Himachal Pradesh 175075, India
| | - Prashant Rawat
- School of Civil and Environmental Engineering, Indian Institute of Technology (IIT) Mandi, Kamand, Himachal Pradesh 175075, India
| | - Nikki Choudhary
- CSIR-National Physical Laboratory (CSIR-NPL), Dr. K.S. Krishnan Road, New Delhi 110012, India
| | - Akansha Rai
- CSIR-National Physical Laboratory (CSIR-NPL), Dr. K.S. Krishnan Road, New Delhi 110012, India
| | - Rohit Meena
- Geosciences Division, Physical Research Laboratory, Ahmedabad, Gujarat 380009, India
| | - Tuhin K Mandal
- CSIR-National Physical Laboratory (CSIR-NPL), Dr. K.S. Krishnan Road, New Delhi 110012, India
| | - Jingying Mao
- Institute for Environmental and Climate Research, Jinan University, Guangzhou 510632, PR China
| | - Shiguo Jia
- Guangdong Province Key Laboratory for Climate Change and Natural Disaster Studies, Sun Yat-sen University, Guangzhou 510275, PR China; School of Atmospheric Sciences, Sun Yat-sen University, Guangzhou 510275, PR China
| | - Neeraj Rastogi
- Geosciences Division, Physical Research Laboratory, Ahmedabad, Gujarat 380009, India
| | - Sudhir K Sharma
- CSIR-National Physical Laboratory (CSIR-NPL), Dr. K.S. Krishnan Road, New Delhi 110012, India
| | - Sayantan Sarkar
- School of Civil and Environmental Engineering, Indian Institute of Technology (IIT) Mandi, Kamand, Himachal Pradesh 175075, India.
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Rawat P, Sawarkar R. SPTing across condensates: SEC-mediated translocation of SPT complex from pausing condensates to elongation condensates. EMBO Rep 2023; 24:e56810. [PMID: 36762438 PMCID: PMC9986807 DOI: 10.15252/embr.202356810] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Accepted: 01/31/2023] [Indexed: 02/11/2023] Open
Abstract
Several independent studies in the last few years have suggested that phase separation and biomolecular condensation play a critical role in regulating different transcription steps from initiation to pausing and elongation. However, how components of the transcription machinery translocate among different types of condensates during transcription remains poorly understood. Guo et al have now identified a potential mechanism underlying translocation of the DSIF complex from pausing to elongation condensates during promoter pause release, as reported in this issue of EMBO reports.
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Affiliation(s)
- Prashant Rawat
- Institute of BiochemistrySwiss Federal Institute of Technology (ETH)ZurichSwitzerland
| | - Ritwick Sawarkar
- Medical Research Council (MRC), Department of GeneticsUniversity of CambridgeCambridgeUK
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Rawat P, Sharma B, Dey S, Rana A, Mukherjee A, Polana AJ, Mao J, Jia S, Yadav AK, Khillare PS, Sarkar S. Are fireworks a significant episodic source of brown carbon? Environ Sci Pollut Res Int 2022; 29:40252-40261. [PMID: 35404032 DOI: 10.1007/s11356-022-20183-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Accepted: 04/06/2022] [Indexed: 06/14/2023]
Abstract
We hypothesize that firework events involving the combustion of charcoal fuel, organic binders, metal salts, and cellulose-based wrapping material could be significant transient sources of aerosol brown carbon (BrC). To test this, we couple high time-resolution (1 min) measurements of black carbon (BC) and BrC absorption from a 7-wavelength aethalometer with time-integrated (12-24 h) measurements of filter extracts, i.e., UV-visible, fluorescence, and Fourier-transformed infrared (FT-IR) signatures of BrC, total and water-soluble organic carbon (OC and WSOC), ionic species, and firework tracer metals during a sampling campaign covering the Diwali fireworks episode in India. In sharp contrast to BC, BrC absorption shows a distinct and considerable rise of 2-4 times during the Diwali period, especially during the hours of peak firework activity, as compared to the background. Fluorescence profiles suggest enrichment of humic-like substances (HULIS) in the firework plume, while the enhancement of BrC absorption in the 400-500 nm range suggests the presence of nitroaromatic compounds (NACs). Considerable contributions of WSOC and secondary organics to OC (44.1% and 31.2%, respectively) and of the water-soluble fraction of BrC to total BrC absorption (71.0%) during the Diwali period point toward an atmospherically processed, polar signature of firework-related BrC, which is further confirmed by FT-IR profiles. This aqueous BrC exerts a short-lived but strong effect on atmospheric forcing (12.0% vis-à-vis BC in the UV spectrum), which could affect tropospheric chemistry via UV attenuation and lead to a stabilization of the post-Diwali atmosphere, resulting in enhanced pollutant build-up and exposure.
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Affiliation(s)
- Prashant Rawat
- Department of Earth Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur, 741246, Nadia, India
- School of Engineering, Indian Institute of Technology (IIT) Mandi, Kamand, Himachal Pradesh, 175075, India
| | - Bijay Sharma
- Department of Earth Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur, 741246, Nadia, India
- School of Engineering, Indian Institute of Technology (IIT) Mandi, Kamand, Himachal Pradesh, 175075, India
| | - Supriya Dey
- Department of Earth Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur, 741246, Nadia, India
- School of Engineering, Indian Institute of Technology (IIT) Mandi, Kamand, Himachal Pradesh, 175075, India
| | - Archita Rana
- Department of Earth Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur, 741246, Nadia, India
| | - Arya Mukherjee
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur, 741246, Nadia, India
| | - Anuraag J Polana
- Department of Earth Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur, 741246, Nadia, India
| | - Jingying Mao
- Institute for Environmental and Climate Research, Jinan University, Guangzhou, 510632, People's Republic of China
| | - Shiguo Jia
- Guangdong Province Key Laboratory for Climate Change and Natural Disaster Studies, Sun Yat-Sen University, Guangzhou, 510275, People's Republic of China
- School of Atmospheric Sciences, Sun Yat-Sen University, Guangzhou, 510275, People's Republic of China
| | - Amit K Yadav
- School of Environmental Sciences, Jawaharlal Nehru University, New Delhi, 110067, India
| | - Pandit S Khillare
- School of Environmental Sciences, Jawaharlal Nehru University, New Delhi, 110067, India
| | - Sayantan Sarkar
- Department of Earth Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur, 741246, Nadia, India.
- School of Engineering, Indian Institute of Technology (IIT) Mandi, Kamand, Himachal Pradesh, 175075, India.
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Srivastava A, Rawat P, Kumar M, Nirala V, Singh SP, Prabhu KN, Sundaresan V, Srivastava S. Identification of potential source of quality raw material of Costus speciosus from Western coast of Malabar. JPC-J PLANAR CHROMAT 2022. [DOI: 10.1007/s00764-022-00167-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Rawat P, Liu P, Zhang C, Guo S, Jawad LA, Sadighzadeh Z, Zhu D. Hierarchical structure and mechanical properties of fish scales from Lutjanidae with different habitat depths. J Fish Biol 2022; 100:242-252. [PMID: 34739135 DOI: 10.1111/jfb.14940] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2020] [Revised: 10/29/2021] [Accepted: 11/02/2021] [Indexed: 06/13/2023]
Abstract
In recent days, many researchers are focusing on emerging a new class of bio-inspired architectured materials. The primary strategy of these architecture designs is directly dependent on the types of available literature based on higher-ordered species such as nacre and fish scales. In this study, the authors have investigated the microstructural features and mechanical properties of five different ray-finned fish scales from Lutjanidae family collected in Iran. It was found that habitat depth and habits may result in significant changes in scale's surface morphology and mechanical properties. Interestingly, the variations in cross-sectional microstructural features such as fibre orientation and layer thickness ratios in scales did not show noticeable differences. It has also been proved that the mechanical performance of fish scales is influenced by the shape, array pattern and compactness of strips on posterior edges in a scale. Moreover, the radii count at anterior positions is higher in fishes living in wide-ranging depth; it supports in achieving higher scale stiffness and flexibility during movement. Consideration of these factors may help in optimising the performance of newly designed architectured materials subjected to mechanical loadings.
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Affiliation(s)
- Prashant Rawat
- Key Laboratory for Green & Advanced Civil Engineering Materials and Application Technology of Hunan Province, College of Civil Engineering, Hunan University, Changsha, P. R. China
- Department of Aerospace Engineering, Indian Institute of Technology Madras, Chennai, India
- International Science Innovation Collaboration Base for Green & Advanced Civil Engineering Materials of Hunan Province, Hunan University, Changsha, P. R. China
| | - Peng Liu
- College of Mechanical and Vehicle Engineering, Hunan University, Changsha, P. R. China
| | - Chaohui Zhang
- Department of Aerospace Engineering, Indian Institute of Technology Madras, Chennai, India
| | - Shuaicheng Guo
- Key Laboratory for Green & Advanced Civil Engineering Materials and Application Technology of Hunan Province, College of Civil Engineering, Hunan University, Changsha, P. R. China
- International Science Innovation Collaboration Base for Green & Advanced Civil Engineering Materials of Hunan Province, Hunan University, Changsha, P. R. China
| | - Laith A Jawad
- School of Environmental and Animal Sciences, Unitec Institute of Technology, Auckland, New Zealand
| | - Zahra Sadighzadeh
- Marine Biology Department, Graduate school of Marine Science and Technology, Science and Research Branch, Islamic Azad University, Tehran, Iran
| | - Deju Zhu
- Key Laboratory for Green & Advanced Civil Engineering Materials and Application Technology of Hunan Province, College of Civil Engineering, Hunan University, Changsha, P. R. China
- International Science Innovation Collaboration Base for Green & Advanced Civil Engineering Materials of Hunan Province, Hunan University, Changsha, P. R. China
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Rawat P, Boehning M, Hummel B, Aprile-Garcia F, Pandit AS, Eisenhardt N, Khavaran A, Niskanen E, Vos SM, Palvimo JJ, Pichler A, Cramer P, Sawarkar R. Stress-induced nuclear condensation of NELF drives transcriptional downregulation. Mol Cell 2021; 81:1013-1026.e11. [PMID: 33548202 PMCID: PMC7939545 DOI: 10.1016/j.molcel.2021.01.016] [Citation(s) in RCA: 70] [Impact Index Per Article: 23.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2020] [Revised: 10/20/2020] [Accepted: 01/11/2021] [Indexed: 12/21/2022]
Abstract
In response to stress, human cells coordinately downregulate transcription and translation of housekeeping genes. To downregulate transcription, the negative elongation factor (NELF) is recruited to gene promoters impairing RNA polymerase II elongation. Here we report that NELF rapidly forms nuclear condensates upon stress in human cells. Condensate formation requires NELF dephosphorylation and SUMOylation induced by stress. The intrinsically disordered region (IDR) in NELFA is necessary for nuclear NELF condensation and can be functionally replaced by the IDR of FUS or EWSR1 protein. We find that biomolecular condensation facilitates enhanced recruitment of NELF to promoters upon stress to drive transcriptional downregulation. Importantly, NELF condensation is required for cellular viability under stressful conditions. We propose that stress-induced NELF condensates reported here are nuclear counterparts of cytosolic stress granules. These two stress-inducible condensates may drive the coordinated downregulation of transcription and translation, likely forming a critical node of the stress survival strategy.
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Affiliation(s)
- Prashant Rawat
- Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany; Faculty of Biology, University of Freiburg, Freiburg, Germany; International Max Planck Research School for Molecular and Cellular Biology (IMPRS-MCB), Freiburg, Germany.
| | - Marc Boehning
- Department of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany
| | - Barbara Hummel
- Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany
| | | | - Anwit S Pandit
- Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany; CIBSS, Centre for Integrative Biological Signaling Studies, Freiburg, Germany; Spemann Graduate School of Biology and Medicine, Albert Ludwigs University of Freiburg, Freiburg, Germany
| | - Nathalie Eisenhardt
- Department of Epigenetics, Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany
| | - Ashkan Khavaran
- Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany; Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Einari Niskanen
- Institute of Biomedicine, University of Eastern Finland, Kuopio, Finland
| | - Seychelle M Vos
- Department of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany
| | - Jorma J Palvimo
- Institute of Biomedicine, University of Eastern Finland, Kuopio, Finland
| | - Andrea Pichler
- Department of Epigenetics, Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany
| | - Patrick Cramer
- Department of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.
| | - Ritwick Sawarkar
- Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany; CIBSS, Centre for Integrative Biological Signaling Studies, Freiburg, Germany; MRC, University of Cambridge, Cambridge, UK.
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Rawat P, Zhu D, Rahman MZ, Barthelat F. Structural and mechanical properties of fish scales for the bio-inspired design of flexible body armors: A review. Acta Biomater 2021; 121:41-67. [PMID: 33285327 DOI: 10.1016/j.actbio.2020.12.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2020] [Revised: 11/17/2020] [Accepted: 12/01/2020] [Indexed: 12/22/2022]
Abstract
Natural protection offered to living beings is the result of millions of years of biological revolution. The protections provided in fishes, armadillos, and turtles by unique hierarchal designs help them to survive in surrounding environments. Natural armors offer protections with outstanding mechanical properties, such as high penetration resistance and toughness to weight ratio. The mechanical properties are not the only key features that make scales unique; they are also highly flexible and breathable. In this study, we aim to review the structural and mechanical characteristics of the scales from ray-finned or teleost fishes, which can be used for new bio-inspired armor designs. It is also essential to consider the hierarchical structure of extinct and existing natural armors. The basic characteristics, as mentioned above, are the foundation for developing high-performance, well-structured flexible natural armors. Furthermore, the present review justifies the importance of interaction between toughness, hardness, and deformability in well-engineered bio-inspired body armor. At last, some suggestions are proposed for the design and fabrication of new bio-inspired flexible body armors.
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Affiliation(s)
- Prashant Rawat
- Key Laboratory for Green & Advanced Civil Engineering Materials and Application Technology of Hunan Province, College of Civil Engineering, Hunan University, Changsha 410082, China; International Science Innovation Collaboration Base for Green & Advanced Civil Engineering Materials of Hunan Province, Hunan University, Changsha 410082, China
| | - Deju Zhu
- Key Laboratory for Green & Advanced Civil Engineering Materials and Application Technology of Hunan Province, College of Civil Engineering, Hunan University, Changsha 410082, China; International Science Innovation Collaboration Base for Green & Advanced Civil Engineering Materials of Hunan Province, Hunan University, Changsha 410082, China.
| | - Md Zillur Rahman
- Department of Industrial Engineering, BGMEA University of Fashion and Technology, Dhaka 1230, Bangladesh
| | - Francois Barthelat
- Department of Mechanical Engineering, University of Colorado, 427 UCB, 1111 Engineering Dr, Boulder, CO 80309, United States.
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Lan C, Rawat P, Sawarkar R, Hugel T. Quantification of the Onset of Condensation in Negative Elongation Factors. Biophys J 2021. [DOI: 10.1016/j.bpj.2020.11.434] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
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Antonova A, Hummel B, Khavaran A, Redhaber DM, Aprile-Garcia F, Rawat P, Gundel K, Schneck M, Hansen EC, Mitschke J, Mittler G, Miething C, Sawarkar R. Heat-Shock Protein 90 Controls the Expression of Cell-Cycle Genes by Stabilizing Metazoan-Specific Host-Cell Factor HCFC1. Cell Rep 2020; 29:1645-1659.e9. [PMID: 31693902 DOI: 10.1016/j.celrep.2019.09.084] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2019] [Revised: 08/06/2019] [Accepted: 09/27/2019] [Indexed: 12/18/2022] Open
Abstract
Molecular chaperones such as heat-shock proteins (HSPs) help in protein folding. Their function in the cytosol has been well studied. Notably, chaperones are also present in the nucleus, a compartment where proteins enter after completing de novo folding in the cytosol, and this raises an important question about chaperone function in the nucleus. We performed a systematic analysis of the nuclear pool of heat-shock protein 90. Three orthogonal and independent analyses led us to the core functional interactome of HSP90. Computational and biochemical analyses identify host cell factor C1 (HCFC1) as a transcriptional regulator that depends on HSP90 for its stability. HSP90 was required to maintain the expression of HCFC1-targeted cell-cycle genes. The regulatory nexus between HSP90 and the HCFC1 module identified in this study sheds light on the relevance of chaperones in the transcription of cell-cycle genes. Our study also suggests a therapeutic avenue of combining chaperone and transcription inhibitors for cancer treatment.
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Affiliation(s)
- Aneliya Antonova
- Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany; Faculty of Biology, University of Freiburg, Freiburg, Germany
| | - Barbara Hummel
- Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany
| | - Ashkan Khavaran
- Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany; Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Desiree M Redhaber
- German Consortium for Translational Cancer Research (DKTK), Partner Site Freiburg and German Cancer Research Center (DKFZ), Heidelberg, Germany; Department of Hematology, Oncology and Stem Cell Transplantation, Faculty of Medicine, Medical Center - University of Freiburg, Freiburg, Germany; Faculty of Biology, University of Freiburg, Freiburg, Germany
| | | | - Prashant Rawat
- Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany; Faculty of Biology, University of Freiburg, Freiburg, Germany
| | - Kathrin Gundel
- Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany
| | - Megan Schneck
- Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany
| | - Erik C Hansen
- Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany
| | - Jan Mitschke
- Department of Hematology, Oncology and Stem Cell Transplantation, Faculty of Medicine, Medical Center - University of Freiburg, Freiburg, Germany
| | - Gerhard Mittler
- Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany
| | - Cornelius Miething
- German Consortium for Translational Cancer Research (DKTK), Partner Site Freiburg and German Cancer Research Center (DKFZ), Heidelberg, Germany; Department of Hematology, Oncology and Stem Cell Transplantation, Faculty of Medicine, Medical Center - University of Freiburg, Freiburg, Germany; BIOSS Centre for Biological Signalling Studies, University of Freiburg, Freiburg, Germany
| | - Ritwick Sawarkar
- Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany; CIBSS Centre for Integrative Biological Signalling Studies, University of Freiburg, Freiburg, Germany; MRC Toxicology Unit, University of Cambridge, Cambridge, UK.
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Zhang C, Rawat P, Liu P, Zhu D. A new design and performance optimization of bio-inspired flexible protective equipment. Bioinspir Biomim 2020; 15:066003. [PMID: 32640437 DOI: 10.1088/1748-3190/aba414] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2020] [Accepted: 07/08/2020] [Indexed: 06/11/2023]
Abstract
In this study, a new biomimetic design of protective equipment has been proposed. Basically, teleost fish scales combine a two-layered structure, a tough high mineralized bony layer with a relatively soft collagen and fiber-based sublayer arranged in a periodic overlapping design, which offers excellent flexibility and puncture resistance. For the biomimetic design of fish scales, a hard-ceramic layer with an ultra-high-molecular-weight polyethylene based-sublayer is used for the design of protective equipment. Finite element analysis of the bio-inspired protective design and its ballistic performance is done by a commercially available 3D simulation software LS-DYNA. Various design parameters, including the overlapping angle of adjacent scales, frictional coefficient between scales, number of Kevlar layers in the backing layer, ceramic types in the scale are discussed and analyzed to optimize the flexibility aspects of protective equipment. The ballistic performance of newly designed protective equipment with a failure pattern is examined as per the National Institute of Justice (NIJ) standards level III. Results based on experimental outcome and optimized parameters defined the critical performance limit of the protective equipment. Therefore, the results of this research provide valuable information related to ballistic safety equipment for improving the existing designs and/or fabricating innovative protective equipment.
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Affiliation(s)
- Chaohui Zhang
- Key Laboratory for Green & Advanced Civil Engineering Materials and Application Technology of Hunan Province, College of Civil Engineering, Hunan University, Changsha 410082, People's Republic of China
| | - Prashant Rawat
- Key Laboratory for Green & Advanced Civil Engineering Materials and Application Technology of Hunan Province, College of Civil Engineering, Hunan University, Changsha 410082, People's Republic of China
- International Science Innovation Collaboration Base for Green & Advanced Civil Engineering Materials of Hunan Province, Hunan University, Changsha 410082, People's Republic of China
| | - Peng Liu
- College of Mechanical and Vehicle Engineering, Hunan University, Changsha, People's Republic of China
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Rana A, Dey S, Rawat P, Mukherjee A, Mao J, Jia S, Khillare PS, Yadav AK, Sarkar S. Optical properties of aerosol brown carbon (BrC) in the eastern Indo-Gangetic Plain. Sci Total Environ 2020; 716:137102. [PMID: 32059320 DOI: 10.1016/j.scitotenv.2020.137102] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Revised: 02/02/2020] [Accepted: 02/02/2020] [Indexed: 06/10/2023]
Abstract
We report here measurements of aerosol black carbon (BC) and aqueous and methanol-extractable brown carbon (BrCaq and BrCme) from a receptor location in the eastern Indo-Gangetic Plain (IGP) under two aerosol regimes: the photochemistry-dominated summer and biomass burning (BB) dominated post-monsoon. We couple time-resolved measurements of BC and aerosol light absorption coefficients (babs) with time-integrated analysis of BrC UV-Vis and fluorescence characteristics, along with measurements of total and water-soluble organic carbon (OC and WSOC), and ionic species (NH4+, K+, NO3-). In the BB regime, BC and its BB-derived fraction (BCBB) increased by factors of 3-4 over summertime values. In comparison, babs_365_aq and babs_365_me (absorption coefficients of BrCaq and BrCme at 365 nm) increased by a factor of 5 (9.7 ± 7.8 vs 2.1 ± 1.4 Mm-1) and 2.5 (17.2 ± 9.0 vs 6.9 ± 2.9 Mm-1), respectively, in the BB period over summer, and were highly correlated (r = 0.82-0.87; p < 0.01) with the BB-tracer nssK+. The wavelength dependence of babs_BrC (Ångstrom exponent: 5.9-6.2) and the presence of characteristic fluorescence peaks at 420-430 nm suggested presence of humic-like substances (HULIS) in the aged BB aerosol, while significant association between BrCaq and NO3- (r = 0.73; p < 0.01) possibly indicated formation of water-soluble nitroaromatic compounds. BrCaq contributed 55% to total BrC absorption at 300-400 nm while that for the water-insoluble component (WI-BrC) increased from 41% at 340 nm to ~60% at 550 nm, suggesting formation of water-insoluble polycyclic aromatic hydrocarbons (PAHs) and/or N-PAHs. Mass absorption efficiencies at 365 nm (MAE365) of BrCaq and BrCme in the BB regime (0.95 ± 0.45 and 1.17 ± 0.78 m2 g-1, respectively) were in line with values expected from photobleaching of BB source emissions after transport to the eastern IGP. Overall, BrCaq and BrCme were significant components of light absorbing aerosol in the BB regime, with contributions of 9 ± 5% and 16 ± 7%, respectively, to radiative forcing vis-à-vis BC in the 300-400 nm range.
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Affiliation(s)
- Archita Rana
- Department of Earth Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur, 741246, Nadia, India
| | - Supriya Dey
- Department of Earth Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur, 741246, Nadia, India
| | - Prashant Rawat
- Department of Earth Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur, 741246, Nadia, India
| | - Arya Mukherjee
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur, 741246, Nadia, India
| | - Jingying Mao
- Institute for Environmental and Climate Research, Jinan University, Guangzhou 510632, PR China
| | - Shiguo Jia
- Guangdong Province Key Laboratory for Climate Change and Natural Disaster Studies, Sun Yat-sen University, Guangzhou 510275, PR China; School of Atmospheric Sciences, Sun Yat-sen University, Guangzhou 510275, PR China
| | - Pandit S Khillare
- School of Environmental Sciences, Jawaharlal Nehru University, New Delhi 110067, India
| | - Amit Kumar Yadav
- School of Environmental Sciences, Jawaharlal Nehru University, New Delhi 110067, India
| | - Sayantan Sarkar
- Department of Earth Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur, 741246, Nadia, India; Centre for Climate and Environmental Studies, Indian Institute of Science Education and Research (IISER) - Kolkata, Mohanpur, 741246, Nadia, India.
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Kolakkandi V, Sharma B, Rana A, Dey S, Rawat P, Sarkar S. Spatially resolved distribution, sources and health risks of heavy metals in size-fractionated road dust from 57 sites across megacity Kolkata, India. Sci Total Environ 2020; 705:135805. [PMID: 31972942 DOI: 10.1016/j.scitotenv.2019.135805] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2019] [Revised: 10/25/2019] [Accepted: 11/26/2019] [Indexed: 05/11/2023]
Abstract
This work reports the first assessment of contamination levels, source contributions and health risks associated with heavy metals (HMs) in road dust from Kolkata, the second-most polluted metropolis in India. To this end, samples collected from 57 locations across 6 land-use categories: residential, roadside, traffic, railway, port and industrial areas in the city during 2018 were analyzed for 11 major and trace metals (Ca, Mg, Fe, Al, Mn, Ni, V, Cu, Zn, Cr, Pb) in three size fractions: <75 μm, 75-125 μm and 125-300 μm. Overall, Mn, Zn, Cr, Pb, V, Cu and Ni were enriched in the smallest fraction by factors of 1.2-2.7. Based on metal distribution across land-use categories, crustal dust (Fe, Al, V), construction activities (Ca, Mg), metallurgical processes (Pb), and non-exhaust abrasive emissions from brake, tire and paint wear (Cu, Zn, Cr) were found to be significant. HMs such as Cu, Zn, Cr and Pb were considerably enriched over background levels as suggested by three contamination indices: Enrichment Factor (EF; overall range: 2.4-12.0), Index of Geo-accumulation (Igeo; overall range: 1.1-3.4), and Pollution Index (PI; overall range: 3.1-15.6). Geospatial mapping identified HM contamination hotspots (integrated PI >4) in west-central and northern parts (the older sections) of the city represented by industrial, port, and traffic-congested residential areas. Using positive matrix factorization (PMF), the following sources were apportioned for the three size fractions: crustal dust (48-66%), construction activities (18-20%), vehicular abrasion (7-21%), industrial emissions (5-8%), a Cr-dominated mixed source (6%) and an unassigned source (7%). Finally, health risk assessment in the form of cumulative hazard index (HI) and incremental lifetime cancer risk (ILCR) found that children (mean HIchildren: 1.29 and ILCRchildren: 2E-04) are comparatively more vulnerable than adults (mean HIadults: 0.22 and ILCRadults: 8E-05) to HM exposure, with the ingestion exposure pathway dominating over dermal contact and inhalation.
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Affiliation(s)
- Vismay Kolakkandi
- Department of Earth Sciences, Indian Institute of Science Education and Research (IISER), Kolkata, Mohanpur 741246, Nadia, India
| | - Bijay Sharma
- Department of Earth Sciences, Indian Institute of Science Education and Research (IISER), Kolkata, Mohanpur 741246, Nadia, India
| | - Archita Rana
- Department of Earth Sciences, Indian Institute of Science Education and Research (IISER), Kolkata, Mohanpur 741246, Nadia, India
| | - Supriya Dey
- Department of Earth Sciences, Indian Institute of Science Education and Research (IISER), Kolkata, Mohanpur 741246, Nadia, India
| | - Prashant Rawat
- Department of Earth Sciences, Indian Institute of Science Education and Research (IISER), Kolkata, Mohanpur 741246, Nadia, India
| | - Sayantan Sarkar
- Department of Earth Sciences, Indian Institute of Science Education and Research (IISER), Kolkata, Mohanpur 741246, Nadia, India.; Centre for Climate and Environmental Studies, Indian Institute of Science Education and Research (IISER), Kolkata, Mohanpur 741246, Nadia, India..
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Abstract
Purpose: To report results of a novel technique for sutureless, glueless intrascleral fixation of three-piece posterior chamber intraocular lens (IOL) using 26-G needle for management of aphakia. Methods: In this prospective series, 30 eyes of 20 patients with aphakia, subluxated IOL, or crystalline lens were included. 26-G-needle-guided intrascleral fixation of three-piece posterior chamber IOL was performed according to the described technique. The patients were evaluated on day 2, 1 week, 6 weeks, and 3 months postoperatively for change in best-corrected visual acuity (BCVA), intraocular pressure (IOP), IOL centration, and any other complications. The postoperative tilt of the IOL was indirectly measured by determining the lenticular astigmatism which in turn was calculated by the difference between net corneal astigmatism and refractive astigmatism. Paired t-test was used to determine the significance of any association between the preoperative and postoperative BCVA and IOP. P < 0.05 was considered significant. Results: Of 30 eyes (n = 30 patients), 18 were surgical aphakia, 6 traumatic aphakia, 5 subluxated IOL, and 1 ectopia lentis (Marfan syndrome). The mean preoperative BCVA was 1.37 ± 0.37 (logMAR) and postoperative BCVA at 3 months was 0.37 ± 0.29 (logMAR). A significant improvement in the mean BCVA (P < 0.05) was observed after the procedure. The mean IOP preoperatively was 13.33 ± 4.18 and postoperatively at 3 months was 12.82 ± 3.97 (P > 0.05), which was not significant. None of the eyes developed any intraoperative and postoperative complications. The IOLs had appropriate centration and stability. Conclusion: We have developed this new technique for intrascleral IOL fixation which is quite simple, cost-effective, minimally invasive, neither requires glue nor suture and gives consistent outcome.
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Affiliation(s)
- Shweta Walia
- Department of Ophthalmology, Mahatma Gandhi Memorial Medical College, M.Y. Hospital, Indore, Madhya Pradesh, India
| | - Santosh Kashyap
- Department of Ophthalmology, Mahatma Gandhi Memorial Medical College, M.Y. Hospital, Indore, Madhya Pradesh, India
| | - V Bhaisare
- Department of Ophthalmology, Mahatma Gandhi Memorial Medical College, M.Y. Hospital, Indore, Madhya Pradesh, India
| | - P Rawat
- Department of Ophthalmology, Mahatma Gandhi Memorial Medical College, M.Y. Hospital, Indore, Madhya Pradesh, India
| | - N Kori
- Department of Ophthalmology, Mahatma Gandhi Memorial Medical College, M.Y. Hospital, Indore, Madhya Pradesh, India
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Shashikumar N, Baithalu R, Bathla S, Ali S, Rawat P, Kumaresan A, Kumar S, Maharana B, Singh G, Puneeth Kumar D, Singh S, Lathwal S, Jaiswal L, Mohanty T, Mohanty A. Global proteomic analysis of water buffalo ( Bubalus bubalis ) saliva at different stages of estrous cycle using high throughput mass spectrometry. Theriogenology 2018; 110:52-60. [DOI: 10.1016/j.theriogenology.2017.12.046] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2017] [Revised: 12/30/2017] [Accepted: 12/30/2017] [Indexed: 01/07/2023]
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Gupta R, Chaturvedi M, Kushwaha S, Jalan N, Rawat P, Thakur R. Clinical, laboratory and Imaging characteristics in patients with Neurological deficits in Tuberculous meningitis and its effect on patient outcome. Int J Infect Dis 2016. [DOI: 10.1016/j.ijid.2016.11.199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
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Rawat P, Singh R. Spectral analysis, structural elucidation and evaluation of chemical reactivity of synthesized ethyl-4-[(2-cyano-acetyl)-hydrazonomethyl]-3,5-dimethyl-1H-pyrrole-2-carboxylate through experimental studies and quantum chemical calculations. J Mol Struct 2014. [DOI: 10.1016/j.molstruc.2014.05.050] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Siddiqui JA, Swarnkar G, Sharan K, Chakravarti B, Gautam AK, Rawat P, Kumar M, Gupta V, Manickavasagam L, Dwivedi AK, Maurya R, Chattopadhyay N. A naturally occurring rare analog of quercetin promotes peak bone mass achievement and exerts anabolic effect on osteoporotic bone. Osteoporos Int 2011; 22:3013-27. [PMID: 21225417 DOI: 10.1007/s00198-010-1519-4] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/24/2010] [Accepted: 12/06/2010] [Indexed: 12/01/2022]
Abstract
UNLABELLED The effect of quercetin C-glucoside (QCG) on osteoblast function in vitro and bone formation in vivo was investigated. QCG supplementation promoted peak bone mass achievement in growing rats and new bone formation in osteopenic rats. QCG has substantial oral bioavailability. Findings suggest a significant bone anabolic effect of QCG. INTRODUCTION Recently, we showed that extracts of Ulmus wallichiana promoted peak bone mass achievement in growing rats and preserved trabecular bone mass and cortical bone strength in ovariectomized (OVx) rats. 3,3',4',5,7-Pentahydroxyflavone-6-C-β-D-glucopyranoside, a QCG, is the most abundant bioactive compound of U. wallichiana extract. We hypothesize that QCG exerts bone anabolic effects by stimulating osteoblast function. METHODS Osteoblast cultures were harvested from rat calvaria and bone marrow (BM) to study differentiation and mineralization. In vivo, growing female Sprague Dawley rats and OVx rats with osteopenia were administered QCG (5.0 or 10.0 mg kg(-1) day(-1)) orally for 12 weeks. Efficacy was evaluated by examining changes in bone microarchitecture using histomorphometric and microcomputed tomographic analyses and by determination of new bone formation by fluorescent labeling of bone. Plasma and BM levels of QCG were determined by high-performance liquid chromatography. RESULTS QCG was much more potent than quercetin (Q) in stimulating osteoblast differentiation, and the effect of QCG was not mediated by estrogen receptors. In growing rats, QCG increased BM osteoprogenitors, bone mineral density, bone formation rate, and cortical deposition. In osteopenic rats, QCG treatment increased bone formation rate and improved trabecular microarchitecture. Comparison with the sham group (ovary intact) revealed significant restoration of trabecular bone in osteopenic rats treated with QCG. QCG levels in the BM were ~50% of that of the plasma levels. CONCLUSION QCG stimulated modeling-directed bone accrual and exerted anabolic effects on osteopenic rats by direct stimulatory effect on osteoprogenitors likely due to substantial QCG delivery at tissue level following oral administration.
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Affiliation(s)
- J A Siddiqui
- Division of Endocrinology, Central Drug Research Institute (Council of Scientific and Industrial Research), Chattar Manzil, P.O. Box 173, Lucknow, India
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Sharan K, Siddiqui J, Swarnkar G, Rawat P, Maurya R, Sanyal S, Chattopadhyay N. ISOLATION AND CHARACTERIZATION OF A NOVEL BONE FORMING AGENT (CDROSTEOID-II) FROM NATURAL SOURCE. Maturitas 2009. [DOI: 10.1016/s0378-5122(09)70155-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Affiliation(s)
- A Mani
- Christian Medical College, Ludhiana, Punjab, North India
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