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Zelinskii GE, Limarev IP, Vologzhanina AV, Olshevskaya VA, Makarenkov AV, Dorovatovskii PV, Chuprin AS, Vershinin MA, Dudkin SV, Voloshin YZ. Synthesis and Structure of the Bis- and Tris-Polyhedral Hybrid Carboranoclathrochelates with Functionalizing Biorelevant Substituents-The Derivatives of Propargylamine Iron(II) Clathrochelates with Terminal Triple C≡C Bond(s). Molecules 2021; 26:3635. [PMID: 34198621 PMCID: PMC8232327 DOI: 10.3390/molecules26123635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Revised: 06/09/2021] [Accepted: 06/09/2021] [Indexed: 11/16/2022] Open
Abstract
A synthetic strategy for obtaining structurally flexible hybrid iron(II) carboranoclatrochelates functionalized with biorelevant groups, based on a combination of a 1,3-dipolar cycloaddition reaction with nucleophilic substitution of an appropriate chloroclathrochelate precursor, was developed. In its first stage, a stepwise substitution of the dichloroclathrochelate precursor with amine N-nucleophiles of different natures in various solvents was performed. One of its two chlorine atoms with morpholine or diethylamine in dichloromethane gave reactive monohalogenoclathrochelate complexes functionalized with abiorelevant substituents. Further nucleophilic substitution of their remaining chlorine atoms with propargylamine in DMF led to morpholine- and diethylamine-functionalized monopropargylamine cage complexes, the molecules of which contain the single terminal C≡C bond. Their "click" 1,3-cycloaddition reactions in toluene with ortho-carborane-(1)-methylazide catalyzed by copper(II) acetate gave spacer-containing di- and tritopic iron(II) carboranoclatrochelates formed by a covalent linking between their different polyhedral(cage) fragments. The obtained complexes were characterized using elemental analysis, MALDI-TOF mass, UV-Vis, 1H, 1H{11B}, 11B, 11B{1H}, 19F{1H} and 13C{1H}-NMR spectra, and by a single crystal synchrotron X-ray diffraction experiment for the diethylamine-functionalized iron(II) carboranoclathrochelate. Its encapsulated iron(II) ion is situated almost in the center of the FeN6-coordination polyhedron possessing a geometry intermediate between a trigonal prism and a trigonal antiprism with a distortion angle φ of approximately 28°. Conformation of this hybrid molecule is strongly affected by its intramolecular dihydrogen bonding: a flexibility of the carborane-terminated ribbed substituent allowed the formation of numerous C-H…H-B intramolecular interactions. The H(C) atom of this carborane core also forms the intermolecular C-H…F-B interaction with an adjacent carboranoclathrochelate molecule. The N-H…N intermolecular interaction between the diethylamine group of one hybrid molecule and the heterocyclic five-membered 1H-[1,2,3]-triazolyl fragment of the second molecule of this type caused formation of H-bonded carboranoclathrochelate dimers in the X-rayed crystal.
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Affiliation(s)
- Genrikh E. Zelinskii
- Kurnakov Institute of General and Inorganic Chemistry of the Russian Academy of Sciences, Leninskii pr., 31, 119991 Moscow, Russia; (G.E.Z.); (I.P.L.)
- Nesmeyanov Institute of the Organoelement Compounds of the Russian Academy of Sciences, Vavilova Str., 28, 119991 Moscow, Russia; (A.V.V.); (V.A.O.); (A.V.M.); (A.S.C.); (S.V.D.)
| | - Ilya P. Limarev
- Kurnakov Institute of General and Inorganic Chemistry of the Russian Academy of Sciences, Leninskii pr., 31, 119991 Moscow, Russia; (G.E.Z.); (I.P.L.)
- Nesmeyanov Institute of the Organoelement Compounds of the Russian Academy of Sciences, Vavilova Str., 28, 119991 Moscow, Russia; (A.V.V.); (V.A.O.); (A.V.M.); (A.S.C.); (S.V.D.)
| | - Anna V. Vologzhanina
- Nesmeyanov Institute of the Organoelement Compounds of the Russian Academy of Sciences, Vavilova Str., 28, 119991 Moscow, Russia; (A.V.V.); (V.A.O.); (A.V.M.); (A.S.C.); (S.V.D.)
| | - Valentina A. Olshevskaya
- Nesmeyanov Institute of the Organoelement Compounds of the Russian Academy of Sciences, Vavilova Str., 28, 119991 Moscow, Russia; (A.V.V.); (V.A.O.); (A.V.M.); (A.S.C.); (S.V.D.)
| | - Anton V. Makarenkov
- Nesmeyanov Institute of the Organoelement Compounds of the Russian Academy of Sciences, Vavilova Str., 28, 119991 Moscow, Russia; (A.V.V.); (V.A.O.); (A.V.M.); (A.S.C.); (S.V.D.)
| | | | - Alexander S. Chuprin
- Nesmeyanov Institute of the Organoelement Compounds of the Russian Academy of Sciences, Vavilova Str., 28, 119991 Moscow, Russia; (A.V.V.); (V.A.O.); (A.V.M.); (A.S.C.); (S.V.D.)
| | - Mikhail A. Vershinin
- Nikolaev Institute of Inorganic Chemistry of the Siberian Branch of the Russian Academy of Sciences, 3 Lavrentieva prosp., 630090 Novosibirsk, Russia;
| | - Semyon V. Dudkin
- Nesmeyanov Institute of the Organoelement Compounds of the Russian Academy of Sciences, Vavilova Str., 28, 119991 Moscow, Russia; (A.V.V.); (V.A.O.); (A.V.M.); (A.S.C.); (S.V.D.)
| | - Yan Z. Voloshin
- Kurnakov Institute of General and Inorganic Chemistry of the Russian Academy of Sciences, Leninskii pr., 31, 119991 Moscow, Russia; (G.E.Z.); (I.P.L.)
- Nesmeyanov Institute of the Organoelement Compounds of the Russian Academy of Sciences, Vavilova Str., 28, 119991 Moscow, Russia; (A.V.V.); (V.A.O.); (A.V.M.); (A.S.C.); (S.V.D.)
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Kurochkin IY, Olshevskaya VA, Zaitsev AV, Girichevac NI, Girichev GV. Vibrational Spectra of 5,10,15,20-Tetraphenylporphyrin (H2TPP) and Platinum(II) 5,10,15,20-Tetra(phenyl/pentafluorophenyl)porphyrins (PtTPP and PtTF5PP). MACROHETEROCYCLES 2021. [DOI: 10.6060/mhc224109g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Zelinskii GE, Belov AS, Vologzhanina AV, Limarev IP, Pavlov AA, Olshevskaya VA, Makarenkov AV, Dorovatovskii PV, Lebed EG, Voloshin YZ. Iron(II) Clathrochelate with Terminal Triple C≡C Bond and Its Carboranoclathrochelate Derivative with a Flexible Linker between the Polyhedral Cages: Synthesis and X‐Ray Structure. ChemistrySelect 2019. [DOI: 10.1002/slct.201902888] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Genrikh E. Zelinskii
- Kurnakov Institute of General and Inorganic Chemistry of the Russian Academy of Sciences, 31 Leninsky Prosp. 119991 Moscow Russia
- Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciences, 28 Vavilova St. 119991 Moscow Russia
| | - Alexander S. Belov
- Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciences, 28 Vavilova St. 119991 Moscow Russia
| | - Anna V. Vologzhanina
- Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciences, 28 Vavilova St. 119991 Moscow Russia
| | - Ilya P. Limarev
- Kurnakov Institute of General and Inorganic Chemistry of the Russian Academy of Sciences, 31 Leninsky Prosp. 119991 Moscow Russia
- Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciences, 28 Vavilova St. 119991 Moscow Russia
| | - Alexander A. Pavlov
- Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciences, 28 Vavilova St. 119991 Moscow Russia
| | - Valentina A. Olshevskaya
- Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciences, 28 Vavilova St. 119991 Moscow Russia
| | - Anton V. Makarenkov
- Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciences, 28 Vavilova St. 119991 Moscow Russia
| | | | - Ekaterina G. Lebed
- Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciences, 28 Vavilova St. 119991 Moscow Russia
| | - Yan Z. Voloshin
- Kurnakov Institute of General and Inorganic Chemistry of the Russian Academy of Sciences, 31 Leninsky Prosp. 119991 Moscow Russia
- Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciences, 28 Vavilova St. 119991 Moscow Russia
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Lyubimov SE, Kalinin VN, Tyutyunov AA, Olshevskaya VA, Dutikova YV, Cheong CS, Petrovskii PV, Safronov AS, Davankov VA. Chiral phosphites derived from carboranes: Electronic effect in catalytic asymmetric hydrogenation. Chirality 2009; 21:2-5. [DOI: 10.1002/chir.20565] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Levit GL, Krasnov VP, Gruzdev DA, Demin AM, Bazhov IV, Sadretdinova LS, Olshevskaya VA, Kalinin VN, Cheong CS, Chupakhin ON, Charushin VN. Synthesis of N-[(3-Amino-1,2-dicarba-closo-dodecaboran-1-yl)acetyl] Derivatives of α-Amino Acids. ACTA ACUST UNITED AC 2007. [DOI: 10.1135/cccc20071697] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
The N-[(3-amino-1,2-dicarba-closo-dodecaboran-1-yl)acetyl] derivatives of α-amino acids were prepared starting from N-protected (Ac, Form, Bz, and Boc) 3-amino-1-(carboxymethyl)-o-carboranes and alkyl esters of natural α-amino acids using the carbodiimide method of coupling and removing the ester groups. All the amides obtained were diastereoisomeric mixtures. Some diastereoisomers were separated and the assignment of the absolute configuration of aminocarborane fragments was performed by X-ray crystallography.
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Chupakhin ON, Prokhorov AM, Kozhevnikov DN, Rusinov VL, Kalinin VN, Olshevskaya VA, Glukhov IV, Antipin MY. 1,2,4-Triazinylcarboranes: a new approach to the synthesis and the crystal structures of 1-(3,6-ditolyl-1,2,4-triazin-5-yl)-2-phenyl-1,2-dicarba-closo-dodecaborane and 1,7-bis[6-phenyl-3-(4-chlorophenyl)-1,2,4-triazin-5-yl]-1,7-dicarba-closo-dodecaborane. Mendeleev Communications 2003. [DOI: 10.1070/mc2003v013n04abeh001773] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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