Amplification of photocatalytic degradation of antibiotics (amoxicillin, ciprofloxacin) by sodium doping in nano-crystallite hydroxyapatite

In this research, we explain the production of sodium-doped hydroxyapatite (Na_HAp) via wet chemical precipitation, followed by crystal modification. To enhance its photocatalytic activity different % of (0.25, 0.5, 1, and 2) sodium doped into HAp crystal. It has been demonstrated that doping is an effective method for modifying the properties of nanomaterials, such as their optical performance and chemical reactivity. Several instrumental approaches were used to characterize this newly synthesized sodium-doped HAp (Na_HAp), e.g. scanning electron microscopy (SEM), energy-dispersive X-ray spectroscopy (EDX), X-ray diffraction (XRD), and UV-vis spectrometry were used to analyze the morphology, elemental composition, crystal structure, and optical bandgap, respectively. Under sunlight irradiation, the new Na_HAp photocatalyst was put to use in the process of degrading pharmaceutical pollutants such as antibiotics (amoxicillin and ciprofloxacin). It was found that using a 0.1 g dose of 1% Na_HAp under specified conditions, such as a pH of 7 and 120 minutes of sunlight irradiation, resulted in degradation percentages of 60% and 41.59% for amoxicillin and ciprofloxacin, respectively. Different radical scavengers were utilized to determine the reaction mechanism for the photochemical degradation of antibiotics. Additionally, the ability to be reused and the stability of 1% Na_HAp, a newly developed photocatalyst, were assessed. Therefore, this research adds to our understanding of how to optimize redox capacity for the rapid breakdown of a variety of antibiotics when exposed to sunlight.

Synthesis of different types of nano-hydroxyapatites for efficient photocatalytic degradation of textile dye (Congo red): a crystallographic characterization

The textile industry, a vital economic force in developing nations, faces significant challenges including the release of undesired dye effluents, posing potential health and environmental risks which need to be minimized with the aid of sustainable materials. This study focuses on the photocatalytic potential of hydroxyapatite together with different dopants like titanium-di-oxide (TiO2) and zinc oxide (ZnO). Here, we synthesized hydroxyapatite (HAp) using different calcium sources (calcium hydroxide, calcium carbonate) and phosphorous sources (phosphoric acid, diammonium hydrogen phosphate) precursors through a wet chemical precipitation technique. Pure and doped HAp were characterized via different technologies, which consist of X-ray diffraction (XRD), Fourier Transform Infrared (FTIR) spectroscopy, scanning electron microscopy (SEM), as well as UV-vis spectroscopy. The effectiveness of the synthesized photocatalyst was evaluated by its interactivity with synthetic azo dyes (Congo red). The photodegradation of Ca(OH)2_HAp, CaCO3_HAp, ZnO-doped HAp as well as TiO2-doped HAp, were obtained as 89%, 91%, 86%, and 91%, respectively. Furthermore, at neutral pH, TiO2-doped HAp shows the highest degradation (86%), whereas ZnO-doped HAp possesses the lowest degradation (73%). Additionally, various XRD models (Monshi-Scherrer's, Williamson-Hall, and Halder-Wagner methods) were employed to study crystallite dimension.

Fabrication and Characterization of a Bioscaffold Using Hydroxyapatite and Unsaturated Polyester Resin

Outstanding biodegradability and biocompatibility are attributes associated with particular polyester substances that make this group useful in specific biomedical fields. To assess the potential as a biomaterial, a novel composite consisting of hydroxyapatite (HAp) and unsaturated polyester resin (UPR) was developed in this work. Using a hand-lay-up technique, various percentages (50, 40, 30, 20, and 10%) of HAp were reinforced into the UPR matrix to fabricate composite materials out of glass sheets. Prior to processing of the composite samples, hydroxyapatite was chemically synthesized in a wet chemical manner. Using a universal testing machine (UTM), Fourier transform infrared (FTIR) spectroscopy, scanning electron microscopy (SEM), and thermo-gravimetric analysis (TGA), the fabricated samples were characterized. The crystallographic parameters of synthesized hydroxyapatite (HAp) were also estimated through a range of formulas. The optimal amount for hydroxyapatite was 40% according to the findings of the tensile strength (TS), tensile modulus (TM), percentage of elongation at break (EB), bending strength (BS), and bending modulus (BM). Improvements in TS, TM, BS, and BM for the ideal combination were 39.39, 9.21, 912.05, and 259.96%, in each case, over the controlled one. Thermogravimetric analysis (TGA) has been implemented to determine the degradation temperature of the fabricated composites up to 600 °C.

In silico exploration of Serratia sp. BRL41 genome for detecting prodigiosin Biosynthetic Gene Cluster (BGC) and in vitro antimicrobial activity assessment of secreted prodigiosin

The raising concern of drug resistance, having substantial impacts on public health, has instigated the search of new natural compounds with substantial medicinal activity. In order to find out a natural solution, the current study has utilized prodigiosin, a linear tripyrrole red pigment, as an active ingredient to control bacterial proliferation and prevent cellular oxidation caused by ROS (Reactive Oxygen Species). A prodigiosin-producing bacterium BRL41 was isolated from the ancient Barhind soil of BCSIR Rajshahi Laboratories, Bangladesh, and its morphological and biochemical characteristics were investigated. Whole genome sequencing data of the isolate revealed its identity as Serratia sp. and conferred the presence of prodigiosin gene cluster in the bacterial genome. "Prodigiosin NRPS", among the 10 analyzed gene clusters, showed 100% similarity with query sequences where pigC, pigH, pigI, and pigJ were identified as fundamental genes for prodigiosin biosynthesis. Some other prominent clusters for synthesis of ririwpeptides, yersinopine, trichrysobactin were also found in the chromosome of BRL41, whilst the rest displayed less similarity with query sequences. Except some first-generation beta-lactam resistance genes, no virulence and resistance genes were found in the genome of BRL41. Structural illumination of the extracted red pigment by spectrophotometric scanning, Thin-Layer Chromatography (TLC), Fourier Transform Infrared Spectroscopy (FTIR), and change of color at different pH solutions verified the identity of the isolated compound as prodigiosin. Serratia sp. BRL41 attained its maximum productivity 564.74 units/cell at temperature 30˚C and pH 7.5 in two-fold diluted nutrient broth medium. The compound exhibited promising antibacterial activity against Gram-positive and Gram-negative bacteria with MIC (Minimum Inhibitory Concentration) and MBC (Minimum Bactericidal Concentration) values ranged from 3.9 to15.62 μg/mL and 7.81 to 31.25 μg/mL respectively. At concentration 500 μg/mL, except in Salmonella enterica ATCC-10708, prodigiosin significantly diminished biofilm formed by Listeria monocytogens ATCC-3193, Pseudomonas aeruginosa ATCC-9027, Escherichia coli (environmental isolate), Staphylococcus aureus (environmental isolate). Cellular glutathione level (GSH) was elevated upon application of 250 and 500 μg/mL pigment where 125 μg/mL failed to show any free radical scavenging activity. Additionally, release of cellular components in growth media of both Gram-positive and Gram-negative bacteria were facilitated by the extract that might be associated with cell membrane destabilization. Therefore, the overall findings of antimicrobial, antibiofilm and antioxidant activities suggest that in time to come prodigiosin might be a potential natural source to treat various diseases and infections.

M gene targeted qRT-PCR approach for SARS-CoV-2 virus detection

Quantitative reverse transcriptase polymerase chain reaction (qRT-PCR) is the gold standard method for SARS-CoV-2 detection, and several qRT-PCR kits have been established targeting different genes of the virus. Due to the high mutation rate of these genes, false negative results arise thus complicating the interpretation of the diagnosis and increasing the need of alternative targets. In this study, an alternative approach for the detection of SARS-CoV-2 viral RNA targeting the membrane (M) gene of the virus using qRT-PCR was described. Performance evaluation of this newly developed in-house assay against commercial qRT-PCR kits was done using clinical oropharyngeal specimens of COVID-19 positive patients. The limit of detection was determined using successive dilutions of known copies of SARS-CoV-2 pseudovirus. The M gene based assay was able to detect a minimum of 100 copies of virus/mL indicating its capacity to detect low viral load. The assay showed comparable accuracy, sensitivity and specificity with commercially available kits while detecting all the variants efficiently. The study concluded that the in-house M gene based assay might be an effective alternative for the currently available commercial qRT-PCR kits.

β-tricalcium phosphate synthesized in organic medium for controlled release drug delivery application in bio-scaffolds

β-tricalcium phosphate (β-TCP) was synthesized in an organic medium (acetone) to obtain a single-phase product while calcium carbonate (CaCO3) and ortho-phosphoric acid (H3PO4) were the sources of Ca, and P, respectively. The synthesized β-TCP was characterized by employing a number of sophisticated techniques vis. XRD, FTIR, FESEM, VSM and UV-Vis-NIR spectrometry. On the other hand, cytotoxicity, hemolysis, and antimicrobial activity for Gram-negative as well as Gram-positive (E. coli and S. aureus) bacteria were explored using this synthesized sample in powder format. However, to assess the drug loading and releasing profile, these powdered samples were first compressed into disks followed by sintering at 900 °C. Prior to loading the drug, porosity, density, and water absorbance characteristics of the scaffolds were examined in deionized water. Both loading and releasing profiles of the antibiotic (ciprofloxacin) were looked over at various selected time intervals which were continued up to 28 days. The observed results revealed that 2.87% of ciprofloxacin was loaded while 37% of this loaded drug was released within the selected time frame as set in this study. The scaffold was also immersed in SBF solution maintaining identical interim periods for the bioactivity evaluation. Furthermore, all three types of samples (e.g. drug-loaded, drug-released, and SBF-soaked) were characterized by FESEM and EDX while antimicrobial activity (against E. coli, S. typhi, and S. aureus) and efficacy to prevent hemolysis were also investigated. The drug-loaded scaffold presented a larger inhibition zone than the standard for all three types of microbes. Although powdered β-TCP was inactive in killing the Gram-negative bacteria, surprisingly the drug-released scaffold showed an inhibition zone.

Comparative phylogenetic analysis and transcriptomic profiling of Dengue (DENV-3 genotype I) outbreak in 2021 in Bangladesh

Background

The next-generation sequencing (NGS) technology facilitates in-depth study of host-pathogen metatranscriptome. We, therefore, implicated phylodynamic and transcriptomic approaches through NGS technology to know/understand the dengue virus (DENV) origin and host response with dengue fever.

Methods

In this study, blood serum RNA was extracted from 21 dengue patients and 3 healthy individuals. Total transcriptomic data were analyzed for phylogenetic, phylodynamic, differential express gene (DEG), and gene ontology (GO) using respective bioinformatics tools.

Results

The viral genome sequence revealed dengue viral genome size ranges 10647 to 10707 nucleotide. Phylogenetic and phylodynamic analysis showed that the 2021 epidemic isolates were DENV-3 genotype-I and maintained as a new clade in compared to 2019 epidemic. Transcriptome analysis showed a total of 2686 genes were DEG in dengue patients compared to control with a q-value < 0.05. DESeq2 plot counts function of the top 24 genes with the smallest q-values of differential gene expression of RNA-seq data showed that 11 genes were upregulated, whereas 13 genes were downregulated. GO analysis showed a significant upregulation (p = < 0.001) in a process of multicellular organismal, nervous system, sensory perception of chemical stimulus, and G protein-coupled receptor signaling pathways in the dengue patients. However, there were a significant downregulation (p = < 0.001) of intracellular component, cellular anatomical entity, and protein-containing complex in dengue patients. Most importantly, there was a significant increase of a class of immunoregulatory proteins in dengue patients in compared to the controls, with increased GO of immune system process. In addition, upregulation of toll receptor (TLR) signaling pathways were found in dengue patients. These TLR pathways were particularly involved for the activation of innate system coupled with adaptive immune system that probably involved the rapid elimination of dengue virus infected cells. These differentially expressed genes could be further investigated for target based prophylactic interventions for dengue.

Conclusion

This is a first report describing DENV complete genomic features and differentially expressed genes in patients in Bangladesh. These genes may have diagnostic and therapeutic values for dengue infection. Continual genomic surveillance is required to further investigate the shift in dominant genotypes in relation to viral pathogenesis.

Supplementary Information

The online version contains supplementary material available at 10.1186/s12985-023-02030-1.

FTIR spectrum analysis to predict the crystalline and amorphous phases of hydroxyapatite: a comparison of vibrational motion to reflection

Hydroxyapatites were synthesized from calcium carbonate and ortho-phosphoric acid in amorphous and crystalline phases by varying sintering temperature from 300 to 1100 °C maintaining an increment of 200 °C. The asymmetric and symmetric stretching, and bending vibrations of phosphate and hydroxyl groups were explored in Fourier transformation infrared (FTIR) spectra. Although the FTIR spectra revealed identical peaks in the full range (400-4000 cm^-1 wavenumber), the narrow spectra exerted variations by splitting peaks and intensity. The intensities of peaks at 563, 599, 630, 962, 1026, and 1087 cm^-1 wavenumbers were intensified gradually with the augmentation of sintering temperature, and the relation between the relative peak intensity and sintering temperature was correlated with the aid of the good linear regression coefficient. Peak separations were also found in the case of 962 and 1087 cm^-1 wavenumbers when the sintering temperature was equal to or exceeded 700 °C. The conventional X-ray diffraction (XRD) technique was also employed to explore the crystalline and amorphous phases of synthesized hydroxyapatites.

Exploring the biomedical competency of gamma-radiation aided hydroxyapatite and its composite fabricated with nano-cellulose and chitosan

The well-known biomaterial Ca-hydroxyapatite (Hap) in its pristine form holds the top ranking position in the field of biomedical research and extensive investigation is continuing across the globe to enhance its competency. Hence, having the intention to introduce superior physiognomies (e.g. cytotoxicity, haemocompatibility, and bioactivity coupled with antimicrobial and antioxidant activity) in Hap, in this research work, we exposed Hap to 200 kGy γ-radiation. As a result, γ-radiated Hap exhibited extreme antimicrobial (more than 98%) and moderate (∼34%) antioxidant properties. On the other hand, cytotoxicity and haemocompatibility of γ-radiated Hap were in good agreement with the ISO 10993-5 and ISO 10993-4 standards respectively. Since, bone and joint infections as well as degenerative disorders e.g. osteoarthritis, osteomyelitis, bone injury, and spinal problems have emerged as serious issues and urge a remedial way out, application of γ-radiated Hap could be a promising solution in this regard.

A multicentre study reveals dysbiosis in the microbial co-infection and antimicrobial resistance gene profile in the nasopharynx of COVID-19 patients

The impact of SARS-CoV-2 infection on the nasopharyngeal microbiome has not been well characterised. We sequenced genetic material extracted from nasopharyngeal swabs of SARS-CoV-2-positive individuals who were asymptomatic (n = 14), had mild (n = 64) or severe symptoms (n = 11), as well as from SARS-CoV-2-negative individuals who had never-been infected (n = 5) or had recovered from infection (n = 7). Using robust filters, we identified 1345 taxa with approximately 0.1% or greater read abundance. Overall, the severe cohort microbiome was least diverse. Bacterial pathogens were found in all cohorts, but fungal species identifications were rare. Few taxa were common between cohorts suggesting a limited human nasopharynx core microbiome. Genes encoding resistance mechanisms to 10 antimicrobial classes (> 25% sequence coverages, 315 genes, 63 non-redundant) were identified, with β-lactam resistance genes near ubiquitous. Patients infected with SARS-CoV-2 (asymptomatic and mild) had a greater incidence of antibiotic resistance genes and a greater microbial burden than the SARS-CoV-2-negative individuals. This should be considered when deciding how to treat COVID-19 related bacterial infections.

Hydrazides as Potential HDAC Inhibitors: Structure-activity Relationships and Biological Implications

Epigenetic modulations by HDACs are associated with multiple disease conditions. In this context, HDACs play vital roles in the progression of diseases including several cancers, neurodegenerative diseases, inflammatory diseases, and metabolic disorders. Though several HDAC inhibitors have been established as drug candidates, their usage has been restricted because of broad-spectrum inhibition, highly toxic character, and off-target adverse effects. Therefore, specific HDAC selectivity is essential to get rid of such adverse effects. Hydrazide-based compounds have already been proven to exert higher inhibitory efficacy and specific HDAC selectivity. In this article, the detailed structure-activity relationship (SAR) of the existing hydrazide-based HDAC inhibitors has been elucidated to gather crucial information that can be utilized further for the development of promising drug candidates for combating diverse diseases in the future.

Techno-economic Analysis of Hybrid Renewable Energy System for Healthcare Centre in Northwest Bangladesh

Assessments for the techno-economic viability of the hybrid renewable energy system have been stimulated due to the frequent price hike and falls of fossil fuels, the derivatives generated during the burning of the fuels that are emitted into the environment, and the very high installation cost of the present day’s conventional photovoltaic energy system. This paper reports on the techno-economic performance assessments of a hybrid renewable energy system for a rural healthcare center in Bangladesh. These healthcare centers are essential for the residents of rural areas in Bangladesh. In this regard, a microgrid solar hybrid photovoltaic system has been designed to power a healthcare center in Gangachara Upazila (sub-district), Rangpur district, a northwest region in Bangladesh. The rooftop PV system comprises 400 Wp solar panels, a 25 kW bi-directional inverter, a 28 kW generator, connecting wires, a mounting system, and related accessories. In this assessment, state-of-the-art PV design software, HOMER Powering Health Tool, has been utilized for estimating the load requirements and for techno-economic and environmental evaluation of the microgrid system. The load analysis revealed that a 32 kW grid–connected solar PV system was required for the selected healthcare and the estimated net present cost was US$ 33,818, with a levelized cost of energy was US$ 0.022.

A Fast Adsorption of Azithromycin on Waste-Product-Derived Graphene Oxide Induced by H-Bonding and Electrostatic Interactions

Graphene oxide (GO) was prepared from the graphite electrode of waste dry cells, and the application of the prepared GO as a potential adsorbent for rapid and effective removal of an antibiotic, azithromycin (AZM), has been investigated. The synthesis process of GO is very simple, cost-effective, and eco-friendly. As-prepared GO is characterized by field-emission scanning electron microscopy, energy-dispersive X-ray, transmission electron microscopy, X-ray diffractometry, Fourier transform infrared spectroscopy, elemental analysis, Brunauer-Emmett-Teller sorptometry, and zeta potential analysis. The obtained GO has been employed for removal of the widely used AZM antibiotic from an aqueous solution. The quantitative analysis of AZM before and after adsorption has been carried out by liquid chromatography tandem mass spectrometry. The adsorption of AZM by GO was performed in a batch of experiments where the effects of adsorbent (GO) dose, solution pH, temperature, and contact time were investigated. Under optimum conditions (pH = 7.0, contact time = 15 min, and adsorbent dose = 0.25 g/L), 98.8% AZM was removed from the aqueous solution. The rapid and effective removal of AZM was significantly controlled by the electrostatic attractions and hydrogen bonding on the surface of GO. Adsorption isotherms of AZM onto GO were fitted well with the Freundlich isotherm model, while the kinetic data were fitted perfectly with the pseudo-second order. Therefore, the simple, cost-effective, and eco-friendly synthesis of GO from waste material could be applicable to fabricate an effective and promising low-cost adsorbent for removal of AZM from aqueous media.

Non-Wood Fibers: Relationships of Fiber Properties with Pulp Properties

In this investigation, the relationship between fiber properties and papermaking properties of 22 non-wood materials at the unrefined and refined states was assessed. The fiber length had positive and the cell wall thickness had negative correlation on the strength properties for the refined pulp. The relationship between papermaking properties with pulp quality, such as fines, curl index, kink index, external fibrillation, and coarseness, was also determined. The correlations of multiple regression equations of fiber quality parameters were 70.4% for the tensile index and 84.9% for the tear index for the refined pulp. The correlations of multiple regression equations of chemical characteristics of the samples were 81.9% for the pulp yield and 42.7% for the kappa number. Holocellulose and α-cellulose had a positive and lignin had a negative effect on the pulp yield.

UV-assisted synthesis of hydroxyapatite from eggshells at ambient temperature: cytotoxicity, drug delivery and bioactivity

Hydroxyapatite [Ca10(PO4)6(OH)2], an important biomaterial, retains a chemical structure that is similar to the mineral phase of bone. Consequently, the ability of hydroxyapatite (Hap) to augment bone growth within bone tissue has made it a potential candidate for use as a hard tissue-implant material. In this work, adopting a UV-mediated solid-state method for the first time, hydroxyapatite was synthesized from eggshells and no thermal treatment was used but ambient temperature was maintained. This simple synthesis process involved a combination of ball milling of the starting materials followed by UV-irradiation. UV-excitation of the Ca and P precursors resulted in the desired Hap and X-ray diffraction (XRD), Fourier-transform infrared (FT-IR) and Raman spectroscopic techniques were used for characterization. The potency of UV-Hap as a biomaterial was examined via the bioactivity, cytotoxicity and the drug (ciprofloxacin) loading-releasing response, which was encouraging. The results of the cell viability assays complied an insignificant cytotoxicity and the simulated body fluid immersion test indicated the bioactivity was within the acceptable range. On the other hand, to better understanding the drug ejection and associated transport phenomenon, two kinetic models (Higuchi and Ritger-Peppas models) were used and a diffusion controlled ciprofloxacin release mechanism was observed using the Higuchi model. However, the experimental outcomes of a drug delivery response exposed UV-Hap as a favorable vehicle for drug loading and release. Hence, this research highlights the prospects of a UV-assisted synthesis method as a green route for the synthesis of Hap to be applied in biomedical fields.