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Lopes D, Aveiro SS, Cruz S, Cartaxana P, Domingues P. Proteomic analysis of the mucus of the photosynthetic sea slug Elysia crispata. J Proteomics 2024; 294:105087. [PMID: 38237665 DOI: 10.1016/j.jprot.2024.105087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2023] [Revised: 01/11/2024] [Accepted: 01/15/2024] [Indexed: 01/23/2024]
Abstract
Elysia crispata is a tropical sea slug that can retain intracellular functional chloroplasts from its algae prey, a mechanism termed kleptoplasty. This sea slug, like other gastropods, secretes mucus, a viscous secretion with multiple functions, including lubrication, protection, and locomotion. This study presents the first comprehensive analysis of the mucus proteome of the sea slug E. crispata using gel electrophoresis and HPLC-MS/MS. We identified 306 proteins in the mucus secretions of this animal, despite the limited entries for E. crispata in the Uniprot database. The functional annotation of the mucus proteome using Gene Ontology identified proteins involved in different functions such as hydrolase activity (molecular function), carbohydrate-derived metabolic processes (biological processes) and cytoskeletal organization (cell component). Moreover, a high proportion of proteins with enzymatic activity in the mucus of E. crispata suggests potential biotechnological applications including antimicrobial and antitumor activities. Putative antimicrobial properties are reinforced by the high abundance of hydrolases. This study also identified proteins common in mucus samples from various species, supporting a common mechanism of mucus in protecting cells and tissues while facilitating animal movement. SIGNIFICANCE: Marine species are increasingly drawing the interest of researchers for their role in discovering new bioactive compounds. The study "Proteomic Analysis of the Mucus of the Photosynthetic Sea Slug Elysia crispata" is a pioneering effort that uncovers the complex protein content in this fascinating sea slug's mucus. This detailed proteomic study has revealed proteins with potential use in biotechnology, particularly for antimicrobial and antitumor purposes. This research is a first step in exploring the possibilities within the mucus of Elysia crispata, suggesting the potential for new drug discoveries. These findings could be crucial in developing treatments for severe diseases, especially those caused by multidrug-resistant bacteria, and may lead to significant advances in medical research.
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Affiliation(s)
- Diana Lopes
- ECOMARE - Laboratory for Innovation and Sustainability of Marine Biological Resources, CESAM - Centre for Environmental and Marine Studies, Department of Chemistry, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Susana S Aveiro
- GreenCoLab - Associação Oceano Verde, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal
| | - Sónia Cruz
- ECOMARE, CESAM, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Paulo Cartaxana
- ECOMARE, CESAM, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Pedro Domingues
- Mass Spectrometry Centre, LAQV-REQUIMTE - Associated Laboratory for Green Chemistry of the Network of Chemistry and Technology, Department of Chemistry, University of Aveiro, 3810-193 Aveiro, Portugal.
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Maruyama M, Kagamoto T, Matsumoto Y, Onuma R, Miyagishima SY, Tanifuji G, Nakazawa M, Kashiyama Y. Horizontally Acquired Nitrate Reductase Realized Kleptoplastic Photoautotrophy of Rapaza viridis. Plant Cell Physiol 2023; 64:1082-1090. [PMID: 37217185 DOI: 10.1093/pcp/pcad044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Revised: 05/08/2023] [Accepted: 05/10/2023] [Indexed: 05/24/2023]
Abstract
While photoautotrophic organisms utilize inorganic nitrogen as the nitrogen source, heterotrophic organisms utilize organic nitrogen and thus do not generally have an inorganic nitrogen assimilation pathway. Here, we focused on the nitrogen metabolism of Rapaza viridis, a unicellular eukaryote exhibiting kleptoplasty. Although belonging to the lineage of essentially heterotrophic flagellates, R. viridis exploits the photosynthetic products of the kleptoplasts and was therefore suspected to potentially utilize inorganic nitrogen. From the transcriptome data of R. viridis, we identified gene RvNaRL, which had sequence similarity to genes encoding nitrate reductases in plants. Phylogenetic analysis revealed that RvNaRL was acquired by a horizontal gene transfer event. To verify the function of the protein product RvNaRL, we established RNAi-mediated knock-down and CRISPR-Cas9-mediated knock-out experiments for the first time in R. viridis and applied them to this gene. The RvNaRL knock-down and knock-out cells exhibited significant growth only when ammonium was supplied. However, in contrast to the wild-type cells, no substantial growth was observed when nitrate was supplied. Such arrested growth in the absence of ammonium was attributed to impaired amino acid synthesis due to the deficiency of nitrogen supply from the nitrate assimilation pathway; this in turn resulted in the accumulation of excess photosynthetic products in the form of cytosolic polysaccharide grains, as observed. These results indicate that RvNaRL is certainly involved in nitrate assimilation by R. viridis. Thus, we inferred that R. viridis achieved its advanced kleptoplasty for photoautotrophy, owing to the acquisition of nitrate assimilation via horizontal gene transfer.
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Affiliation(s)
- Moe Maruyama
- Graduate School of Engineering, Fukui University of Technology, 3-6-1 Gakuen, Fukui, 910-8505 Japan
- Department of Applied Chemistry and Food Science, Fukui University of Technology, 3-6-1 Gakuen, Fukui, 910-8505 Japan
| | - Tsuyoshi Kagamoto
- Graduate School of Engineering, Fukui University of Technology, 3-6-1 Gakuen, Fukui, 910-8505 Japan
- Department of Applied Chemistry and Food Science, Fukui University of Technology, 3-6-1 Gakuen, Fukui, 910-8505 Japan
| | - Yuga Matsumoto
- Department of Applied Chemistry and Food Science, Fukui University of Technology, 3-6-1 Gakuen, Fukui, 910-8505 Japan
| | - Ryo Onuma
- Department of Gene Function and Phenomics, National Institute of Genetic, 1111 Yata, Mishima, Shizuoka, 411-8540 Japan
- Kobe University Research Center for Inland Seas, 2746 Iwaya, Awaji, Hyogo, 656-2401 Japan
| | - Shin-Ya Miyagishima
- Department of Gene Function and Phenomics, National Institute of Genetic, 1111 Yata, Mishima, Shizuoka, 411-8540 Japan
| | - Goro Tanifuji
- National Museum of Nature and Science, 4-1-1 Amakubo, Tsukuba, Ibaraki, 305-0005 Japan
| | - Masami Nakazawa
- Department of Applied Biochemistry, Faculty of Agriculture, Osaka Metropolitan University, 1-1 Gakuen-cho, Naka-ku, Sakai, Osaka, 599-8531 Japan
| | - Yuichiro Kashiyama
- Graduate School of Engineering, Fukui University of Technology, 3-6-1 Gakuen, Fukui, 910-8505 Japan
- Department of Applied Chemistry and Food Science, Fukui University of Technology, 3-6-1 Gakuen, Fukui, 910-8505 Japan
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Rey F, Cartaxana P, Aveiro S, Greenacre M, Melo T, Domingues P, Domingues MR, Cruz S. Light modulates the lipidome of the photosynthetic sea slug Elysia timida. Biochim Biophys Acta Mol Cell Biol Lipids 2023; 1868:159249. [PMID: 36336252 DOI: 10.1016/j.bbalip.2022.159249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Revised: 10/27/2022] [Accepted: 10/28/2022] [Indexed: 11/06/2022]
Abstract
Long-term kleptoplasty, the capability to retain functional stolen chloroplasts (kleptoplasts) for several weeks to months, has been shown in a handful of Sacoglossa sea slugs. One of these sea slugs is Elysia timida, endemic to the Mediterranean, which retains functional chloroplasts of the macroalga Acetabularia acetabulum. To understand how light modulates the lipidome of E. timida, sea slug specimens were subjected to two different 4-week light treatments: regular light and quasi-dark conditions. Lipidomic analyses were performed by HILIC-HR-ESI-MS and MS/MS. Quasi-dark conditions caused a reduction in the amount of essential lipids for photosynthetic membranes, such as glycolipids, indicating high level of kleptoplast degradation under sub-optimal light conditions. However, maximum photosynthetic capacities (Fv/Fm) were identical in both light treatments (≈0.75), showing similar kleptoplast functionality and suggesting that older kleptoplasts were targeted for degradation. Although more stable, the phospholipidome showed differences between light treatments: the amount of certain lipid species of phosphatidylethanolamine (PE), phosphatidylinositol (PI), and phosphatidylglycerol (PG) decreased under quasi-dark conditions, while other lipid species of phosphatidylcholine (PC), PE and lyso-PE (LPE) increased. Quasi-dark conditions promoted a decrease in the relative abundance of polyunsaturated fatty acids. These results suggest a light-driven remodelling of the lipidome according to the functions of the different lipids and highlight the plasticity of polar lipids in the photosynthetic sea slug E. timida.
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Havurinne V, Aitokari R, Mattila H, Käpylä V, Tyystjärvi E. Ultraviolet screening by slug tissue and tight packing of plastids protect photosynthetic sea slugs from photoinhibition. Photosynth Res 2022; 152:373-387. [PMID: 34826025 PMCID: PMC9458594 DOI: 10.1007/s11120-021-00883-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Accepted: 10/22/2021] [Indexed: 05/16/2023]
Abstract
One of the main mysteries regarding photosynthetic sea slugs is how the slug plastids handle photoinhibition, the constant light-induced damage to Photosystem II of photosynthesis. Recovery from photoinhibition involves proteins encoded by both the nuclear and plastid genomes, and slugs with plastids isolated from the algal nucleus are therefore expected to be incapable of constantly repairing the damage as the plastids inside the slugs grow old. We studied photoinhibition-related properties of the sea slug Elysia timida that ingests its plastids from the green alga Acetabularia acetabulum. Spectral analysis of both the slugs and the algae revealed that there are two ways the slugs use to avoid major photoinhibition of their plastids. Firstly, highly photoinhibitory UV radiation is screened by the slug tissue or mucus before it reaches the plastids. Secondly, the slugs pack the plastids tightly in their thick bodies, and therefore plastids in the outer layers protect the inner ones from photoinhibition. Both properties are expected to greatly improve the longevity of the plastids inside the slugs, as the plastids do not need to repair excessive amounts of damage.
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Affiliation(s)
- Vesa Havurinne
- Department of Life Technologies/Molecular Plant Biology, University of Turku, Turku, Finland
| | - Riina Aitokari
- Department of Life Technologies/Molecular Plant Biology, University of Turku, Turku, Finland
| | - Heta Mattila
- Department of Life Technologies/Molecular Plant Biology, University of Turku, Turku, Finland
| | - Ville Käpylä
- Department of Life Technologies/Molecular Plant Biology, University of Turku, Turku, Finland
| | - Esa Tyystjärvi
- Department of Life Technologies/Molecular Plant Biology, University of Turku, Turku, Finland.
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Williams AK, Marchand SL, Whereat E, Pettay DT, Coyne KJ. Heterosigma akashiwo does not serve as prey and chloroplast donor for the toxic dinoflagellate, Dinophysis acuminata. Harmful Algae 2022; 111:102168. [PMID: 35016772 DOI: 10.1016/j.hal.2021.102168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2021] [Revised: 12/10/2021] [Accepted: 12/11/2021] [Indexed: 06/14/2023]
Abstract
In laboratory culture, the toxic dinoflagellate Dinophysis acuminata acquires plastids from the ciliate, Mesodinium rubrum, which, in turn, acquires plastids from the cryptophyte, Teleaulax amphioxeia. Reports of D. acuminata from field samples found plastids of the raphidophyte, Heterosigma akashiwo within D. acuminata cells, suggesting a broader range of prey. Dinophysis blooms often co-occur with H. akashiwo in Delaware's inland bays. In the study presented here, predation on H. akashiwo by D. acuminata was investigated. Growth rates of D. acuminata were measured when cultured with H. akashiwo either alone or with its known prey, M. rubrum. M. rubrum was also cultured with H. akashiwo to examine predation by the ciliate as a vector for Heterosigma plastids. Ingestion rates by D. acuminata were measured when presented with H. akashiwo as prey, and retention of plastids from H. akashiwo was investigated by measuring chlorophyll a fluorescence intensities in D. acuminata cells presented with H. akashiwo as prey compared to M. rubrum. Additionally, a fluorescence-based method was developed to identify the presence of the accessory pigment fucoxanthin from H. akashiwo plastids in cells of D. acuminata. Results showed that the growth rate of D. acuminata was significantly lower when offered H. akashiwo as prey compared the growth rate when offered M. rubrum as prey. Likewise, no predation was observed when D. acuminata was offered H. akashiwo as prey. Intensity of chlorophyll a fluorescence was lower when H. akashiwo was offered as prey compared to M. rubrum, and fucoxanthin was not detected in any of the Dinophysis cells examined after incubation with H. akashiwo. Results of this investigation do not support the hypothesis that D. acuminata preys on H. akashiwo and highlight the need for further research on factors that stimulate the growth of Dinophysis in field populations.
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Affiliation(s)
- Amanda K Williams
- University of Delaware, 1044 College Dr., Lewes DE 19958, United States
| | - Sylvain Le Marchand
- BioImaging Center, University of Delaware, Delaware Biotechnology Institute, 590 Avenue 1743, Newark, DE 19713, United States
| | - Edward Whereat
- University of Delaware, 1044 College Dr., Lewes DE 19958, United States
| | - D Tye Pettay
- University of Delaware, 1044 College Dr., Lewes DE 19958, United States; Department of Natural Sciences, University of South Carolina Beaufort, 801 Carteret St, Beaufort, SC, 29902, United States
| | - Kathryn J Coyne
- University of Delaware, 1044 College Dr., Lewes DE 19958, United States.
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Havurinne V, Handrich M, Antinluoma M, Khorobrykh S, Gould SB, Tyystjärvi E. Genetic autonomy and low singlet oxygen yield support kleptoplast functionality in photosynthetic sea slugs. J Exp Bot 2021; 72:5553-5568. [PMID: 33989402 PMCID: PMC8318255 DOI: 10.1093/jxb/erab216] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Accepted: 05/12/2021] [Indexed: 05/04/2023]
Abstract
The kleptoplastic sea slug Elysia chlorotica consumes Vaucheria litorea, stealing its plastids, which then photosynthesize inside the animal cells for months. We investigated the properties of V. litorea plastids to understand how they withstand the rigors of photosynthesis in isolation. Transcription of specific genes in laboratory-isolated V. litorea plastids was monitored for 7 days. The involvement of plastid-encoded FtsH, a key plastid maintenance protease, in recovery from photoinhibition in V. litorea was estimated in cycloheximide-treated cells. In vitro comparison of V. litorea and spinach thylakoids was applied to investigate reactive oxygen species formation in V. litorea. In comparison to other tested genes, the transcripts of ftsH and translation elongation factor EF-Tu (tufA) decreased slowly in isolated V. litorea plastids. Higher levels of FtsH were also evident in cycloheximide-treated cells during recovery from photoinhibition. Charge recombination in PSII of V. litorea was found to be fine-tuned to produce only small quantities of singlet oxygen, and the plastids also contained reactive oxygen species-protective compounds. Our results support the view that the genetic characteristics of the plastids are crucial in creating a photosynthetic sea slug. The plastid's autonomous repair machinery is likely enhanced by low singlet oxygen production and elevated expression of FtsH.
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Affiliation(s)
- Vesa Havurinne
- Department of Biotechnology/Molecular Plant Biology, University of Turku, Turku, Finland
| | - Maria Handrich
- Department of Biology, Heinrich-Heine-Universität, Düsseldorf, Germany
| | - Mikko Antinluoma
- Department of Biotechnology/Molecular Plant Biology, University of Turku, Turku, Finland
| | - Sergey Khorobrykh
- Department of Biotechnology/Molecular Plant Biology, University of Turku, Turku, Finland
| | - Sven B Gould
- Department of Biology, Heinrich-Heine-Universität, Düsseldorf, Germany
| | - Esa Tyystjärvi
- Department of Biotechnology/Molecular Plant Biology, University of Turku, Turku, Finland
- Correspondence:
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7
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Havurinne V, Handrich M, Antinluoma M, Khorobrykh S, Gould SB, Tyystjärvi E. Genetic autonomy and low singlet oxygen yield support kleptoplast functionality in photosynthetic sea slugs. J Exp Bot 2021. [PMID: 33989402 DOI: 10.17632/535dcxjt2d.1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
The kleptoplastic sea slug Elysia chlorotica consumes Vaucheria litorea, stealing its plastids, which then photosynthesize inside the animal cells for months. We investigated the properties of V. litorea plastids to understand how they withstand the rigors of photosynthesis in isolation. Transcription of specific genes in laboratory-isolated V. litorea plastids was monitored for 7 days. The involvement of plastid-encoded FtsH, a key plastid maintenance protease, in recovery from photoinhibition in V. litorea was estimated in cycloheximide-treated cells. In vitro comparison of V. litorea and spinach thylakoids was applied to investigate reactive oxygen species formation in V. litorea. In comparison to other tested genes, the transcripts of ftsH and translation elongation factor EF-Tu (tufA) decreased slowly in isolated V. litorea plastids. Higher levels of FtsH were also evident in cycloheximide-treated cells during recovery from photoinhibition. Charge recombination in PSII of V. litorea was found to be fine-tuned to produce only small quantities of singlet oxygen, and the plastids also contained reactive oxygen species-protective compounds. Our results support the view that the genetic characteristics of the plastids are crucial in creating a photosynthetic sea slug. The plastid's autonomous repair machinery is likely enhanced by low singlet oxygen production and elevated expression of FtsH.
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Affiliation(s)
- Vesa Havurinne
- Department of Biotechnology/Molecular Plant Biology, University of Turku, Turku, Finland
| | - Maria Handrich
- Department of Biology, Heinrich-Heine-Universität, Düsseldorf, Germany
| | - Mikko Antinluoma
- Department of Biotechnology/Molecular Plant Biology, University of Turku, Turku, Finland
| | - Sergey Khorobrykh
- Department of Biotechnology/Molecular Plant Biology, University of Turku, Turku, Finland
| | - Sven B Gould
- Department of Biology, Heinrich-Heine-Universität, Düsseldorf, Germany
| | - Esa Tyystjärvi
- Department of Biotechnology/Molecular Plant Biology, University of Turku, Turku, Finland
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Chihara S, Nakamura T, Hirose E. Seasonality and Longevity of the Functional Chloroplasts Retained by the Sacoglossan Sea Slug Plakobranchus ocellatus van Hasselt, 1824 Inhabiting A Subtropical Back Reef Off Okinawa-jima Island, Japan. Zool Stud 2020; 59:e65. [PMID: 34140982 DOI: 10.6620/ZS.2020.59-65] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2020] [Accepted: 10/12/2020] [Indexed: 01/19/2023]
Abstract
Plakobranchus ocellatus is a sacoglossan sea slug that feeds on multiple algal species and retains chloroplasts as kleptoplasts for several months. The seasonal differences in the photosynthetic properties of kleptoplasts were examined in sacoglossans collected from a subtropical back reef off of Okinawa-jima (26°21'55"N 127°44'10"E) in 2017-2018. The effective quantum yield of photosystem II in kleptoplasts indicated that stronger ambient light causes more stress in kleptoplasts. The maximum quantum yields (QY) at 20°C, 30°C, and 40°C indicated that kleptoplasts were more functional in photosynthesis in winter than in spring or summer, whereas kleptoplasts may have the highest tolerance to high temperatures in summer. In the long-starvation experiment (LSE), the relative ratio of body weight (relW) linearly decreased and the sacoglossans died within 2 months in the total dark condition, whereas in the LSE with illumination, the animals survived up to 5 months. The time course for the decrease in the relative ratio of the QY (relQY) in the LSE indicated that the photosynthetic function was almost normal for 2 months, regardless of the presence or absence of illumination, after which time relQY gradually decreased to zero. In the field, P. ocellatus continuously took up new kleptoplasts that have suitable properties of photosynthetic ability for each season. In a subtropical environment, in which water temperatures vary from below 20°C to above 30°C, seasonal changes could cause a temporary shortage of algal food and affect the photosynthetic activity of P. ocellatus kleptoplast. Our results, however, indicated the kleptoplasts of P. ocellatus functioned normally for several months and maintained the presence of this sacoglossan in a subtropical environment throughout the year.
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Yamaguchi S, Yusa Y, Iwasa Y. Evolution of life cycle dimorphism: An example of sacoglossan sea slugs. J Theor Biol 2021; 525:110760. [PMID: 33984353 DOI: 10.1016/j.jtbi.2021.110760] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Revised: 04/18/2021] [Accepted: 05/04/2021] [Indexed: 11/30/2022]
Abstract
Many sea slugs of Sacoglossa (Mollusca: Heterobranchia) are sometimes called "solar-powered sea slugs" because they keep chloroplasts obtained from their food algae and receive photosynthetic products (termed kleptoplasty). Some species show life cycle dimorphism, in which a single species has some individuals with a complex life cycle (the mother produces planktotrophic larvae, which later settle in the adult habitat) and others with a simple life cycle (mothers produce benthic offspring by direct development or short-term nonfeeding larvae in which feeding planktonic stages are skipped). Life cycle dimorphism is not common among marine species. In this paper, we ask whether some aspects of the ecology of solar-powered sea slugs have promoted the evolution of life cycle dimorphism in them. We study the population dynamics of the two life-cycle types that differ in summer (one with planktonic life and the other with benthic life), but both have benthic life in other seasons. We obtain the conditions in which two types with different life cycles coexist stably or a single type generating offspring with different life cycles evolves. We conclude that the stable coexistence of two life cycles can evolve if benthic individuals in summer experience strongly density-dependent processes or if the between-year fluctuation of biomass growth in summer is very large. We discuss whether these results match the life cycles of solar-powered sea slugs with life cycle dimorphism.
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Affiliation(s)
- Sachi Yamaguchi
- Division of Mathematical Science, Tokyo Woman's Christian University, 2-6-1 Zempukuji, Suginami-ku, Tokyo 167-8585, Japan.
| | - Yoichi Yusa
- Division of Natural Sciences, Nara Women's University, Kitauoya-nishi, Nara 630-8506, Japan
| | - Yoh Iwasa
- Department of Bioscience, School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda-shi, Hyogo 669-1337, Japan
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Van Vlierberghe M, Philippe H, Baurain D. Broadly sampled orthologous groups of eukaryotic proteins for the phylogenetic study of plastid-bearing lineages. BMC Res Notes 2021; 14:143. [PMID: 33865444 PMCID: PMC8052839 DOI: 10.1186/s13104-021-05553-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2021] [Accepted: 04/02/2021] [Indexed: 11/10/2022] Open
Abstract
OBJECTIVES Identifying orthology relationships among sequences is essential to understand evolution, diversity of life and ancestry among organisms. To build alignments of orthologous sequences, phylogenomic pipelines often start with all-vs-all similarity searches, followed by a clustering step. For the protein clusters (orthogroups) to be as accurate as possible, proteomes of good quality are needed. Here, our objective is to assemble a data set especially suited for the phylogenomic study of algae and formerly photosynthetic eukaryotes, which implies the proper integration of organellar data, to enable distinguishing between several copies of one gene (paralogs), taking into account their cellular compartment, if necessary. DATA DESCRIPTION We submitted 73 top-quality and taxonomically diverse proteomes to OrthoFinder. We obtained 47,266 orthogroups and identified 11,775 orthogroups with at least two algae. Whenever possible, sequences were functionally annotated with eggNOG and tagged after their genomic and target compartment(s). Then we aligned and computed phylogenetic trees for the orthogroups with IQ-TREE. Finally, these trees were further processed by identifying and pruning the subtrees exclusively composed of plastid-bearing organisms to yield a set of 31,784 clans suitable for studying photosynthetic organism genome evolution.
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Affiliation(s)
- Mick Van Vlierberghe
- InBioS - PhytoSYSTEMS, Eukaryotic Phylogenomics, University of Liège, Liège, Belgium
| | - Hervé Philippe
- Station D'Ecologie Théorique Et Expérimentale de Moulis, UMR CNRS 5321, Moulis, France.,Département de Biochimie, Centre Robert-Cedergren, Université de Montréal, Montréal, Québec, Canada
| | - Denis Baurain
- InBioS - PhytoSYSTEMS, Eukaryotic Phylogenomics, University of Liège, Liège, Belgium.
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Melo Clavijo J, Frankenbach S, Fidalgo C, Serôdio J, Donath A, Preisfeld A, Christa G. Identification of scavenger receptors and thrombospondin-type-1 repeat proteins potentially relevant for plastid recognition in Sacoglossa. Ecol Evol 2020; 10:12348-12363. [PMID: 33209293 PMCID: PMC7663992 DOI: 10.1002/ece3.6865] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2020] [Revised: 08/20/2020] [Accepted: 08/27/2020] [Indexed: 12/24/2022] Open
Abstract
Functional kleptoplasty is a photosymbiotic relationship, in which photosynthetically active chloroplasts serve as an intracellular symbiont for a heterotrophic host. Among Metazoa, functional kleptoplasty is only found in marine sea slugs belonging to the Sacoglossa and recently described in Rhabdocoela worms. Although functional kleptoplasty has been intensively studied in Sacoglossa, the fundamentals of the specific recognition of the chloroplasts and their subsequent incorporation are unknown. The key to ensure the initiation of any symbiosis is the ability to specifically recognize the symbiont and to differentiate a symbiont from a pathogen. For instance, in photosymbiotic cnidarians, several studies have shown that the host innate immune system, in particular scavenger receptors (SRs) and thrombospondin-type-1 repeat (TSR) protein superfamily, is playing a major role in the process of recognizing and differentiating symbionts from pathogens. In the present study, SRs and TSRs of three Sacoglossa sea slugs, Elysia cornigera, Elysia timida, and Elysia chlorotica, were identified by translating available transcriptomes into potential proteins and searching for receptor specific protein and/or transmembrane domains. Both receptors classes are highly diverse in the slugs, and many new domain arrangements for each receptor class were found. The analyses of the gene expression of these three species provided a set of species-specific candidate genes, that is, SR-Bs, SR-Es, C-type lectins, and TSRs, that are potentially relevant for the recognition of kleptoplasts. The results set the base for future experimental studies to understand if and how these candidate receptors are indeed involved in chloroplast recognition.
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Affiliation(s)
- Jenny Melo Clavijo
- Fakultät für Mathematik und Naturwissenschaften, Zoologie und BiologiedidaktikBergische Universität WuppertalWuppertalGermany
| | - Silja Frankenbach
- Department of Biology and CESAM – Center for Environmental and Marine StudiesUniversity of AveiroAveiroPortugal
| | - Cátia Fidalgo
- Department of Biology and CESAM – Center for Environmental and Marine StudiesUniversity of AveiroAveiroPortugal
| | - João Serôdio
- Department of Biology and CESAM – Center for Environmental and Marine StudiesUniversity of AveiroAveiroPortugal
| | - Alexander Donath
- Center for Molecular Biodiversity ResearchZoological Research Museum Alexander KoenigBonnGermany
| | - Angelika Preisfeld
- Fakultät für Mathematik und Naturwissenschaften, Zoologie und BiologiedidaktikBergische Universität WuppertalWuppertalGermany
| | - Gregor Christa
- Fakultät für Mathematik und Naturwissenschaften, Zoologie und BiologiedidaktikBergische Universität WuppertalWuppertalGermany
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Cartaxana P, Morelli L, Jesus B, Calado G, Calado R, Cruz S. The photon menace: kleptoplast protection in the photosynthetic sea slug Elysia timida. ACTA ACUST UNITED AC 2019; 222:jeb.202580. [PMID: 31171599 DOI: 10.1242/jeb.202580] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Accepted: 06/02/2019] [Indexed: 11/20/2022]
Abstract
Absorption of excessive light by photosymbiotic organisms leads to the production of reactive oxygen species that can damage both symbiont and host. This is highly relevant in sacoglossan sea slugs that host functional chloroplasts 'stolen' from their algal foods (kleptoplasts), because of limited repair capacities resulting from the absence of algal nuclear genes. Here, we experimentally demonstrate (i) a host-mediated photoprotection mechanism in the photosynthetic sea slug Elysia timida, characterized by the closure of the parapodia under high irradiance and the reduction of kleptoplast light exposure; and (ii) the activation of a reversible xanthophyll cycle in kleptoplasts, which allows excessive energy to be dissipated. The described mechanisms reduce photoinactivation under high irradiance. We conclude that both host-mediated behavioural and plastid-based physiological photoprotective mechanisms can mitigate oxidative stress induced by high light in E. timida These mechanisms may play an important role in the establishment of long-term photosynthetically active kleptoplasts.
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Affiliation(s)
- Paulo Cartaxana
- Departamento de Biologia & CESAM & ECOMARE, Universidade de Aveiro, 3810-193 Aveiro, Portugal
| | - Luca Morelli
- Departamento de Biologia & CESAM & ECOMARE, Universidade de Aveiro, 3810-193 Aveiro, Portugal
| | - Bruno Jesus
- Laboratoire Mer Molécules Santé, Faculté des Sciences et des Techniques, Université de Nantes, 44322 Nantes, France
| | - Gonçalo Calado
- Departamento de Ciências da Vida, Universidade Lusófona, 1749-024 Lisboa, Portugal
| | - Ricardo Calado
- Departamento de Biologia & CESAM & ECOMARE, Universidade de Aveiro, 3810-193 Aveiro, Portugal
| | - Sónia Cruz
- Departamento de Biologia & CESAM & ECOMARE, Universidade de Aveiro, 3810-193 Aveiro, Portugal
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13
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Cartaxana P, Morelli L, Quintaneiro C, Calado G, Calado R, Cruz S. Kleptoplast photoacclimation state modulates the photobehaviour of the solar-powered sea slug Elysia viridis. ACTA ACUST UNITED AC 2018; 221:jeb.180463. [PMID: 29712748 DOI: 10.1242/jeb.180463] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2018] [Accepted: 04/26/2018] [Indexed: 12/12/2022]
Abstract
Some sacoglossan sea slugs incorporate intracellular functional algal chloroplasts (kleptoplasty) for periods ranging from a few days to several months. Whether this association modulates the photobehaviour of solar-powered sea slugs is unknown. In this study, the long-term kleptoplast retention species Elysia viridis showed avoidance of dark independently of light acclimation state. In contrast, Placida dendritica, which shows non-functional retention of kleptoplasts, showed no preference over dark, low or high light. High light-acclimated (HLac) E. viridis showed a higher preference for high light than low light-acclimated (LLac) conspecifics. The position of the lateral folds (parapodia) was modulated by irradiance, with increasing light levels leading to a closure of parapodia and protection of kleptoplasts from high light exposure. Furthermore, closure of parapodia occurred at higher irradiance in HLacE. viridis Our results strongly indicate that kleptoplast photoacclimation state modulates the photobehaviour of the solar-powered sea slug E. viridis.
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Affiliation(s)
- Paulo Cartaxana
- Departamento de Biologia & CESAM & ECOMARE, Universidade de Aveiro, 3810-193 Aveiro, Portugal
| | - Luca Morelli
- Departamento de Biologia & CESAM & ECOMARE, Universidade de Aveiro, 3810-193 Aveiro, Portugal.,Dipartimento di Scienze Agrarie, Alimentari e Agro-ambientali, Università di Pisa, 56124 Pisa, Italy
| | - Carla Quintaneiro
- Departamento de Biologia & CESAM & ECOMARE, Universidade de Aveiro, 3810-193 Aveiro, Portugal
| | - Gonçalo Calado
- Departamento de Ciências da Vida, Universidade Lusófona, 1749-024 Lisboa, Portugal
| | - Ricardo Calado
- Departamento de Biologia & CESAM & ECOMARE, Universidade de Aveiro, 3810-193 Aveiro, Portugal
| | - Sónia Cruz
- Departamento de Biologia & CESAM & ECOMARE, Universidade de Aveiro, 3810-193 Aveiro, Portugal
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Laetz EMJ, Wägele H. How does temperature affect functional kleptoplasty? Comparing populations of the solar-powered sister-species Elysia timida Risso, 1818 and Elysia cornigera Nuttall, 1989 (Gastropoda: Sacoglossa). Front Zool 2018; 15:17. [PMID: 29760759 PMCID: PMC5937827 DOI: 10.1186/s12983-018-0264-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2017] [Accepted: 04/06/2018] [Indexed: 01/03/2023] Open
Abstract
Background Despite widespread interest in solar-powered sea slugs (Sacoglossa: Gastropoda), relatively little is know about how they actually perform functional kleptoplasty. Sister-taxa Elysia timida and E. cornigera provide an ideal model system for investigating this phenomenon, since they feed on the same algal genus and only E. timida is capable of long-term kleptoplasty. Recent research has explored factors regarding functional kleptoplasty in E. timida, including their starvation longevity, digestive activity, autophagal response and photosynthetic efficiency under two different temperature conditions (18 °C and 21 °C). These studies revealed the trends E. timida displays regarding each factor during starvation as well as influences temperature has on some aspects of functional kleptoplasty. This study examines E. cornigera regarding each of these factors in an attempt to elucidate differences between each species that could explain their differing kleptoplastic abilities. Since both species naturally occur in 25 °C seawater (E. timida peak summer temperature, E. cornigera low winter temperature), each species was acclimatized to 25 °C to facilitate comparison and determine if these species exhibit physiological differences to starvation when under the same environmental conditions. Results When comparing the different E. timida temperature treatments, it becomes clear that increased temperatures compromise E. timida’s kleptoplastic abilities. Specimens acclimatized to 25 °C revealed shorter starvation longevities surviving an average 42.4 days compared to the 95.9 day average observed in specimens exposed to 18 °C. Each temperature treatment displayed a significantly different decrease throughout the starvation period in both, the rate of photosynthetic efficiency and in the decreasing functional kleptoplast abundance. Lysosomal abundances are assessed here as indicators of different aspects of metabolic activity, which could be correlated to temperature. E. cornigera, also acclimatized to 25 °C did not display significantly similar patterns as any of the E. timida temperature treatments, having fewer incorporated kleptoplasts, a higher lysosomal response to starvation, a faster decrease in photosynthetic efficiency and a lower starvation longevity. Conclusions These results confirm that each species has different physiological reactions to starvation and kleptoplast retention, even under the same conditions. While temperature affects aspects of functional kleptoplasty, it is likely not responsible for the differences in kleptoplastic abilities seen in these species. Electronic supplementary material The online version of this article (10.1186/s12983-018-0264-y) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Elise Marie Jerschabek Laetz
- 1Zoological Research Museum Alexander Koenig, 160 Adenauerallee, 53113 Bonn, Germany.,2Institute for Evolutionary Biology and Ecology, University of Bonn, An der Immenburg 1, 53121 Bonn, Germany
| | - Heike Wägele
- 1Zoological Research Museum Alexander Koenig, 160 Adenauerallee, 53113 Bonn, Germany
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Tanamura D, Hirose E. Population Dynamics of the Sea Slug Plakobranchus ocellatus (Opisthobranch: Sacoglossa: Elysioidea) on a Subtropical Coral Reef off Okinawa-jima Island, Ryukyu Archipelago, Japan. Zool Stud 2016; 55:e42. [PMID: 31966187 DOI: 10.6620/ZS.2016.55-42] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2016] [Accepted: 07/14/2016] [Indexed: 11/18/2022]
Abstract
Daisuke Tanamura and Euichi Hirose (2016) Plakobranchus ocellatus is a sacoglossan sea slug that can retain functional chloroplast from its algal food. This species feed on multiple species of siphonous green algae and can survive several months without food by utilizing retained chloroplasts in its digestive gland (kleptoplasty). While the population dynamics of opisthobranchs are often influenced by the seasonal fluctuation of the abundance of food resources, the fluctuation of food availability would not be a crucial factor to restrict the occurrence of P. ocellatus. We monitored the population density of P. ocellatus for 20 months on a subtropical coral reef where the water temperature fluctuated from 17°C to 32°C, in order to examine whether the population density, distribution pattern of individuals, and size distribution of P. ocellatus are stable or seasonally change. The present results showed that P. ocellatus appeared all year round in the study site, while the population density changed seasonally. The population density decreased in cold (≤ 21°C) and hot (≥ 27°C) periods, and densities in the months of intermediate temperature range (< 21°C, > 25°C) were significantly higher than the densities in other months (Student's t-test, P < 0.0001). Accordingly, population density is probably influenced by water temperature. Morisita's Iδ indicated that the sea slugs were distributed in random patterns (13 months) or clumped patterns (7 months). Our field observations indicated that the sea slugs do not feed in daytime, and probably feed at night. Whereas P. ocellatus individuals of less than 10 mm were rarely recorded in the monitoring area, a decrease of the average body length and increase in population density in April - May suggest active recruitment of small individuals in this period.
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Christa G, Zimorski V, Woehle C, Tielens AGM, Wägele H, Martin WF, Gould SB. Plastid-bearing sea slugs fix CO2 in the light but do not require photosynthesis to survive. Proc Biol Sci 2013; 281:20132493. [PMID: 24258718 DOI: 10.1098/rspb.2013.2493] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Several sacoglossan sea slugs (Plakobranchoidea) feed upon plastids of large unicellular algae. Four species--called long-term retention (LtR) species--are known to sequester ingested plastids within specialized cells of the digestive gland. There, the stolen plastids (kleptoplasts) remain photosynthetically active for several months, during which time LtR species can survive without additional food uptake. Kleptoplast longevity has long been puzzling, because the slugs do not sequester algal nuclei that could support photosystem maintenance. It is widely assumed that the slugs survive starvation by means of kleptoplast photosynthesis, yet direct evidence to support that view is lacking. We show that two LtR plakobranchids, Elysia timida and Plakobranchus ocellatus, incorporate (14)CO2 into acid-stable products 60- and 64-fold more rapidly in the light than in the dark, respectively. Despite this light-dependent CO2 fixation ability, light is, surprisingly, not essential for the slugs to survive starvation. LtR animals survived several months of starvation (i) in complete darkness and (ii) in the light in the presence of the photosynthesis inhibitor monolinuron, all while not losing weight faster than the control animals. Contrary to current views, sacoglossan kleptoplasts seem to be slowly digested food reserves, not a source of solar power.
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Affiliation(s)
- Gregor Christa
- Zoologisches Forschungsmuseum Alexander Koenig, Centre for Molecular Biodiversity Research (zmb), , Bonn 53113, Germany, Institute for Molecular Evolution, Heinrich Heine-University Düsseldorf, , Düsseldorf 40225, Germany, Department of Biochemistry and Cell Biology, Faculty of Veterinary Medicine, Utrecht University, , Utrecht, The Netherlands, Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Center, , Rotterdam, The Netherlands
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