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Zhao W, Ren TH, Huang XY, Xu Z, Zhou YZ, Yin CL, Zhao R, Liu SB, Ning TY, Li G. Leaf shape, planting density, and nitrogen application affect soybean yield by changing direct and diffuse light distribution in the canopy. Plant Physiol Biochem 2023; 204:108071. [PMID: 37922647 DOI: 10.1016/j.plaphy.2023.108071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 09/15/2023] [Accepted: 09/28/2023] [Indexed: 11/07/2023]
Abstract
When attempting to maximize the crop yield from field-grown soybean (Glycine max (L.) Merr.) by means of improving the light conditions for photosynthesis in the canopy, it is crucial to find the optimal planting density and nitrogen application rate. The soybean plants that were the subject of our experiment were cultivated in N-dense mutual pairs, and included two cultivars with different leaf shapes; one cultivar sported ovate leaves (O-type) and the other lanceolate leaves (L-type). We analyzed the results quantitatively to determine the amount of spatial variation in light distribution and photosynthetic efficiency across the canopy, and to gauge the effect of the experimental parameters on the yield as well as the photosynthetic light and nitrogen use efficiency of the crop. Results indicate that the different leaf shapes were responsible for significant disparities between the photosynthetic utilization of direct and diffuse light. As the nitrogen fertilizer rate and the planting density increased, the soybean plants responded by adjusting leaf morphology in order to maximize the canopy apparent photosynthetic light use efficiency, which in turn affected the leaf nitrogen distribution in the canopy. Despite the fact that the light interception rate of the canopy of the L-type cultivar was lower than that of the canopy of the O-type cultivar, we found its canopy apparent photosynthetic nitrogen and light use efficiency were higher. It was interesting to note, however, that the nitrogen and light use efficiency contributions associated with exposure to diffuse light were greater for the latter than for the former.
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Affiliation(s)
- Wei Zhao
- College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, 271018, PR China
| | - Ting-Hu Ren
- College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, 271018, PR China
| | - Xin-Yang Huang
- Jining Academy of Agricultural Sciences, Jining, Shandong, 272075, PR China
| | - Zheng Xu
- Hansha Scientific Instruments Limited, Tai'an, Shandong, 271099, PR China
| | - Yan-Zheng Zhou
- Jining Academy of Agricultural Sciences, Jining, Shandong, 272075, PR China
| | - Cheng-Long Yin
- College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, 271018, PR China
| | - Rui Zhao
- College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, 271018, PR China
| | - Sheng-Bo Liu
- College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, 271018, PR China
| | - Tang-Yuan Ning
- College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, 271018, PR China.
| | - Geng Li
- College of Agronomy, Shandong Agricultural University, Tai'an, Shandong, 271018, PR China.
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Zhang Y, Yuan Y, Qu M, Kang C. Brassinosteroid catabolic enzyme CYP734A129 regulates the morphologies of leaves and floral organs in woodland strawberry. Plant Sci 2023; 335:111788. [PMID: 37421982 DOI: 10.1016/j.plantsci.2023.111788] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Revised: 07/02/2023] [Accepted: 07/04/2023] [Indexed: 07/10/2023]
Abstract
Brassinosteroids (BRs) play critical roles in plant growth and development and regulate many important agronomic traits. However, the functions of BRs in strawberry are unclear. This study identified two mutants, named P6 and R87, in woodland strawberry (Fragaria vesca) from EMS mutagenesis populations that exhibit narrow leaves, petals and sepals. Mapping by sequencing and genetic studies revealed that the F. vesca CYP734A129, encoding a putative BR catabolic enzyme, is the causative gene for both P6 and R87. Overexpression of CYP734A129 in both F. vesca and Arabidopsis causes a severe dwarf phenotype, and the BRI1-EMS-SUPPRESSOR 1 (BES1) protein is less abundant in the CYP734A129-overexpressing Arabidopsis seedlings. This suggests that CYP734A129 is functionally conserved with CYP734A1, as a BR-inactivating enzyme. Transcriptome analysis of young leaves revealed that four BR biosynthetic genes were significantly downregulated in P6 (cyp734a129), and photosynthesis-related genes were highly enriched among the up-regulated genes in P6 compared to the wild type. This further supports that CYP734A129 inactivates BRs in F. vesca. Furthermore, we showed that mutations in CYP734A129 do not affect fruit shape and color during ripening in strawberry. Overall, our results suggest that F. vesca CYP734A129 is a BR catabolic enzyme, and provide insights into the roles of CYP734A129 in strawberry.
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Affiliation(s)
- Yunming Zhang
- National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China; Hubei Hongshan Laboratory, Wuhan 430070, China; Hubei Key Laboratory of Genetic Regulation and Integrative Biology, School of Life Sciences, Central China Normal University, Wuhan 430079, China
| | - Yingxin Yuan
- National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China; Hubei Hongshan Laboratory, Wuhan 430070, China
| | - Minghao Qu
- National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China
| | - Chunying Kang
- National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China; Hubei Hongshan Laboratory, Wuhan 430070, China.
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Tamang BG, Zhang Y, Zambrano MA, Ainsworth EA. Anatomical determinants of gas exchange and hydraulics vary with leaf shape in soybean. Ann Bot 2023; 131:909-920. [PMID: 36111999 PMCID: PMC10332398 DOI: 10.1093/aob/mcac118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Accepted: 09/14/2022] [Indexed: 06/15/2023]
Abstract
BACKGROUND AND AIMS Leaf shape in crops can impact light distribution and carbon capture at the whole plant and canopy level. Given similar leaf inclination, narrow leaves can allow a greater fraction of incident light to pass through to lower canopy leaves by reducing leaf area index, which can potentially increase canopy-scale photosynthesis. Soybean has natural variation in leaf shape which can be utilized to optimize canopy architecture. However, the anatomical and physiological differences underlying variation in leaf shape remain largely unexplored. METHODS In this study, we selected 28 diverse soybean lines with leaf length to width ratios (leaf ratio) ranging between 1.1 and 3.2. We made leaf cross-sectional, gas exchange, vein density and hydraulic measurements and studied their interrelationships among these lines. KEY RESULTS Our study shows that narrow leaves tend to be thicker, with an ~30 µm increase in leaf thickness for every unit increase in leaf ratio. Interestingly, thicker leaves had a greater proportion of spongy mesophyll while the proportions of palisade and paraveinal mesophyll decreased. In addition, narrow and thicker leaves had greater photosynthesis and stomatal conductance per unit area along with greater leaf hydraulic conductance. CONCLUSIONS Our results suggest that selecting for narrow leaves can improve photosynthetic performance and potentially provide a yield advantage in soybean.
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Affiliation(s)
- Bishal G Tamang
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Yanqun Zhang
- China Institute of Water Resources and Hydropower Research, Department of Irrigation and Drainage, Beijing, China
| | - Michelle A Zambrano
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Elizabeth A Ainsworth
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Global Change and Photosynthesis Research Unit, USDA ARS, Urbana, IL, USA
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Abstract
Shoot architecture refers to the three-dimensional body plan of the above ground organs of the plant. The patterning of this body plan results from the tight genetic control of the size and maintenance of meristems, the initiation of axillary growth, and the timing of developmental phase transition. Variation in shoot architecture can result in dramatic differences in plant productivity and/or grain yield due to their effects on light interception, photosynthetic efficiency, response to agronomic inputs, and environmental adaptation. The fine-tuning of shoot architecture has consequently been of great interest to plant breeders, driving the need for deeper understanding of the genes and molecular mechanisms governing these traits. In soybean, the world's most important oil and protein crop, major components of shoot architecture include stem growth habit, plant height, branch angle, branch number, leaf petiole angle, and the size and shape of leaves. Key genes underlying some of these traits have been identified to integrate hormonal, developmental, and environmental signals modulating the growth and orientation of shoot organs. Here we summarize the current knowledge and recent advances in the understanding of the genetic control of these important architectural traits in soybean.
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Affiliation(s)
- Chancelor B. Clark
- Department of Agronomy, Purdue University, 915 W Mitch Daniels Blvd, West Lafayette, 47907 IN USA
| | - Jianxin Ma
- Department of Agronomy, Purdue University, 915 W Mitch Daniels Blvd, West Lafayette, 47907 IN USA
- Center for Plant Biology, Purdue University, West Lafayette, IN USA
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Idaszkin YL, Pollicelli MDLP, Márquez F. Assessment of halophyte plant phenotypic responses under heavy metals pollution. Implications for monitoring and phytoremediation. Environ Pollut 2023; 331:121916. [PMID: 37268220 DOI: 10.1016/j.envpol.2023.121916] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Revised: 05/24/2023] [Accepted: 05/26/2023] [Indexed: 06/04/2023]
Abstract
While phytoremediation is a highly valued practice to address local pollution problems, the use of early biomarkers of stress is useful for monitoring environments since they allow us to take measures before deleterious effects are irreversible. In this framework the goals are: to evaluate the pattern of leaf shape variation of Limonium brasiliense plants related to a metal soil gradient in the San Antonio salt marsh; to assess whether seeds from sites with different pollution levels show the same pattern of leaf shape variations under optimal growing conditions; and to compare the growth, the Pb accumulation pattern, and the leaf shape variation pattern of plants germinated from seeds originated in sites with different pollution levels in response to an experimental Pb rise. The results obtained from leaves collected in the field showed that the leaf shape changed depending on the soil metal levels. Plants germinated from seeds collected at the different sites expressed all the variation in leaf shape independently of the origin site, and the mean shape of each site was close to the consensus. Instead, when looking for the leaf shape components that maximize the differences between the sites from a growth experiment exposed to an increase in Pb in the irrigation solution, the pattern of variation found in the field disappeared. That is, only plants from the polluted site did not show variations in leaf shape in response to Pb additions. Finally, Pb accumulation in the roots was highest in plants germinated from seeds from the site where the soil pollution is greater. That suggests that seeds of L. brasiliense from polluted sites are better to use in phytoremediation practices, specifically to stabilize Pb in its roots whilst plants from the non-polluted site are better to detect pollutant soils using the leaf shape as an early biomarker.
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Affiliation(s)
- Yanina L Idaszkin
- Instituto Patagónico para El Estudio de Los Ecosistemas Continentales (IPEEC-CONICET), Boulevard Brown 2915, U9120ACD, Puerto Madryn, Chubut, Argentina; Universidad Nacional de La Patagonia San Juan Bosco, Boulevard Brown 3051, U9120ACD, Puerto Madryn, Chubut, Argentina
| | - María de la Paz Pollicelli
- Instituto Patagónico para El Estudio de Los Ecosistemas Continentales (IPEEC-CONICET), Boulevard Brown 2915, U9120ACD, Puerto Madryn, Chubut, Argentina; Universidad Nacional de La Patagonia San Juan Bosco, Boulevard Brown 3051, U9120ACD, Puerto Madryn, Chubut, Argentina
| | - Federico Márquez
- Universidad Nacional de La Patagonia San Juan Bosco, Boulevard Brown 3051, U9120ACD, Puerto Madryn, Chubut, Argentina; Instituto de Biología de Organismos Marinos (IBIOMAR-CONICET), Boulevard Brown 2915, U9120ACD, Puerto Madryn, Chubut, Argentina.
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Zareei E, Zaare-Nahandi F, Oustan S, Hajilou J, Dadpour M. Insight into the role of magnetic nutrient solution on leaf morphology and biochemical attributes of Rasha grapevine (Vitis vinifera L.). Plant Physiol Biochem 2022; 185:290-301. [PMID: 35728421 DOI: 10.1016/j.plaphy.2022.06.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Revised: 06/07/2022] [Accepted: 06/13/2022] [Indexed: 06/15/2023]
Abstract
The growth, development, and morphology of plants are extremely affected by many internal and external factors. In this regard, plant nourishing solutions take the most impact. Nowadays, the magnetization of nutrient solutions has been recommended as a promising eco-friendly approach for improving the growth and development of plants. This study was designed to explore the potential of magnetic nutrient solutions in altering morphometric characteristics as well as some physiological and nutritional attributes of Rasha grapevines. Magnetic treatments included magnetized nutrient solution (MagS) and pre-magnetized water completed with nutrients (MagW + S) at magnetic field intensities (0.1 and 0.2 T). According to the results, the most considerable changes in leaf shape and size as well as fresh and dry weights were observed in the plants treated with MagS at 0.2 T. Also, MagS 0.2 had a significant effect on increasing photosynthetic pigments, content of total soluble carbohydrates and protein, and activity of antioxidant enzymes. The content of TNK, K, P, Fe, and Cu was considerably amplified by MagW + S 0.2. Overall, the magnetic solutions had favorable influences on physiological, nutritional state, and leaf morphology of grapevines possibly through alerting water and solution properties, mineral solubility, and phytohormones signalling.
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Affiliation(s)
- Elnaz Zareei
- Department of Horticultural Sciences, Faculty of Agriculture, University of Tabriz, Tabriz, Iran.
| | - Fariborz Zaare-Nahandi
- Department of Horticultural Sciences, Faculty of Agriculture, University of Tabriz, Tabriz, Iran.
| | - Shahin Oustan
- Department of Soil Science, Faculty of Agriculture, University of Tabriz, Tabriz, Iran
| | - Jafar Hajilou
- Department of Horticultural Sciences, Faculty of Agriculture, University of Tabriz, Tabriz, Iran
| | - Mohammadreza Dadpour
- Department of Horticultural Sciences, Faculty of Agriculture, University of Tabriz, Tabriz, Iran.
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Zheng X, Yang X, Chen Z, Xie W, Yue X, Zhu H, Chen S, Sun X. Arabidopsis SMAX1 overaccumulation suppresses rosette shoot branching and promotes leaf and petiole elongation. Biochem Biophys Res Commun 2021; 553:44-50. [PMID: 33756344 DOI: 10.1016/j.bbrc.2021.03.006] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Accepted: 03/01/2021] [Indexed: 12/21/2022]
Abstract
ARABIDOPSIS SMAX1/SMXL (SUPPRESSOR OF MAX2 1/SMAX1-LIKE) proteins function as transcriptional repressors in karrikin and strigolactone (SL) signaling pathways and regulate plant architecture. MAX2 is a common factor in the two signaling pathways and a component of the SCF complex that modulates the proteasome-mediated degradation of SMAX1/SMXLs. SMXL6, 7, and 8 proteins promote shoot branching and inhibit petiole elongation. Our study found that the accumulation of SMAX1 suppresses rosette shoot branching and increases cauline branches on the primary inflorescence stem, plant height, petiole length, and leaf length/width ratio. The SMAX1 accumulation enhances the expression of BRC1, HB53, HB40, and HB21 that modulate shoot branching. SMAX1 also regulates the expression of the genes involved in auxin transport, cytokinin signaling pathway, and SL biosynthesis. The expression analyses of these genes suggest that excessive SMAX1 should accelerate the transport of auxin and the biosynthesis of SL in plants. High SL concentration suppresses the bud development in smax1D mutant that accumulates SMAX1 protein in plant. However, the effects of cytokinin and auxin on shoot branching remain elusive in the mutant with excessive SMAX1. SMAX1 regulates leaf shape and petiole length via modulating TCP1 expression. Our findings reveal a novel function of SMAX1 and new mechanism of shoot branching.
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Liu H, Liu G, Xing W. Functional traits of submerged macrophytes in eutrophic shallow lakes affect their ecological functions. Sci Total Environ 2021; 760:143332. [PMID: 33187713 DOI: 10.1016/j.scitotenv.2020.143332] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2020] [Revised: 10/09/2020] [Accepted: 10/22/2020] [Indexed: 06/11/2023]
Abstract
Trait-based approaches have been widely used to explore the relationships between submerged macrophytes and their surrounding environments. However, the effects of functional traits on ecological functions of submerged macrophytes in eutrophic lakes are still not well understood. Here, 1745 individuals of eight dominant submerged macrophyte species in 19 Yangtze floodplain lakes were collected and classified as needle-leaf (Myriophyllum spicatum, Ceratophyllum demersum, Stuckenia pectinatus, Najas minor) or flat-leaf (Vallisneria natans, Hydrilla verticillata, Potamogeton wrightii, Potamogeton maackianus) types according to photosynthetic trait-based cluster analysis. The flat-leaf type submerged macrophytes possessed greater photosynthetic (e.g. higher Fv/Fm) and morphological traits (e.g. higher SLA), while the needle-leaf types held greater stoichiometric traits (e.g. higher plant N/P). Moreover, the RDA analysis indicated that water depth (distribution depth of submerged macrophytes) was the key factor influencing functional traits of flat-leaf types, while it was water quality (e.g. WTP and WChl a) for the needle-leaf types. Furthermore, the flat-leaf types showed better performance in improving underwater light conditions (e.g. SD, Kd, Zeu/WD and Red/Blue) and water quality (e.g. WChl a and TSM). Additionally, distribution depth (WD) of the flat-leaf types was shallower than the needle-leaf types in eutrophic shallow lakes along the middle-lower reaches of the Yangtze River. Our study highlights that functional traits of submerged macrophytes in eutrophic shallow lakes affect their ecological functions.
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Affiliation(s)
- Han Liu
- CAS Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Guihua Liu
- CAS Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China; Center for Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan 430074, China.
| | - Wei Xing
- CAS Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China; Center for Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan 430074, China.
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He C, Qiu K, Pott R. Reduction of urban traffic-related particulate matter-leaf trait matters. Environ Sci Pollut Res Int 2020; 27:5825-5844. [PMID: 31853855 DOI: 10.1007/s11356-019-07160-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2019] [Accepted: 11/22/2019] [Indexed: 06/10/2023]
Abstract
Particulate matter in European cities, especially in urban areas, is mainly from urban road traffic and constitutes a great threat to the health of inhabitants. Therefore, understanding of the role of common urban roadside plant plays for particulate matter (PM) reduction would have important meaning for the mitigation of urban air pollution. The leaf surface PM capturing capacity of 12 representative urban plants (five shrubs and seven trees) alongside one main street in Hanover Germany was explored in this study. Significant differences for the amount of captured PM (both PM10 and PM2.5) on the leaf surface were found between plant species. Leaves of Taxus baccata, Berberis thunbergii, Pinus nigra, and Quercus robur showed the highest capturing capacity, while leaves of Prunus laurocerasus and Carpinus betulus showed the lowest value. Leaf shape is an important factor which affects the capturing capacity of the tested plant species. Needle-leaved pants were relatively more effective than broad-leaved species. Besides, species with small leaf surface area (0-10 cm2) showed a notably higher capacity than species with large leaf surface area (over 100 cm2). Additionally, by the observation of leaf surface characteristics, plant species with rough and hairy leaf surface tended to be more effective than species with smooth leaf surface. More PM was found distributed on the upper leaf surface close to the midrib rather than on the surface area away from it. At last, no significant correlation was found between the leaf surface contact angle and its PM capturing capacity for the 12 tested plant species in September. In summary, leaf traits including leaf form, leaf shape, leaf surface area, leaf surface hydrophilicity and leaf surface characteristics all have notable effects on the PM capturing capacity of the roadside plant species. This study provides a scientific basis for roadside plants as an eco-friendly solution for the reduction of urban traffic-related PM and stresses the importance of leaf traits as criteria for the plant selection.
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Affiliation(s)
- Chen He
- Institute of Geobotany, Leibniz Universität Hannover, Nienburger str. 17, 30167, Hannover, Germany
| | - Kaiyang Qiu
- Institute of Grassland Sciences, School of Agriculture Ningxia University, Helanshan West Road 489#, Xixia District, Yinchuan, 750021, Ningxia, People's Republic of China.
| | - Richard Pott
- Institute of Geobotany, Leibniz Universität Hannover, Nienburger str. 17, 30167, Hannover, Germany
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Zhang GJ, Hu HH, Gao TG, Gilbert MG, Jin XF. Convergent origin of the narrowly lanceolate leaf in the genus Aster-with special reference to an unexpected discovery of a new Aster species from East China. PeerJ 2019; 7:e6288. [PMID: 30701132 PMCID: PMC6348959 DOI: 10.7717/peerj.6288] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2018] [Accepted: 12/15/2018] [Indexed: 11/20/2022] Open
Abstract
Narrowly lanceolate leaves occur frequently in the genus Aster. It was often employed as a distinguishing character in the taxonomy of this genus. The origin of this particular leaf shape, however, has never been investigated using comparative methods. In this study, we reconstructed a comprehensive phylogeny that includes most species of Aster with narrowly lanceolate leaf. We then gathered data on riparian habitats and the presence or absence of narrowly lanceolate leaves, and investigated the evolutionary association between them in a phylogenetic context. Our analysis indicated that the species with narrowly lanceolate leaves are nested in unrelated lineages of the genus Aster, implying that they originated independently several times. Using Pagel’s comparative method of discrete data, we demonstrated a significant correlation between riparian habitats and narrowly lanceolate leaves. We further inferred the sequence of transition of the two characters. This analysis indicated that the sequence of evolution of riparian habitat and narrowly lanceolate leaf form was usually uncertain, but some positive results showed that the occurrence of riparian habitats may not precede the evolution of narrowly lanceolate leaf form. This study provided new insights into the adaptive evolution in a mega-diverse family. In addition, Aster tonglingensis, an unexpected new species with narrowly lanceolate leaves, was discovered and established based on the evidence from morphology, micromorphology and molecular phylogeny.
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Affiliation(s)
- Guo-Jin Zhang
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, China.,University of Chinese Academy of Science, Beijing, China
| | - Hai-Hua Hu
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, China.,University of Chinese Academy of Science, Beijing, China
| | - Tian-Gang Gao
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, China.,University of Chinese Academy of Science, Beijing, China
| | | | - Xiao-Feng Jin
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, China
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11
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Victorino J, Gómez F. Contour analysis for interpretable leaf shape category discovery. Plant Methods 2019; 15:112. [PMID: 31624489 PMCID: PMC6781385 DOI: 10.1186/s13007-019-0497-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2019] [Accepted: 09/24/2019] [Indexed: 05/05/2023]
Abstract
BACKGROUND The categorical description of leaf shapes is of paramount importance in ecology, taxonomy and paleobotanical studies. Classification systems proposed by domain experts support these descriptions. Despite the importance of these visual descriptive systems, classifications based on this expert's knowledge may be ambiguous or limited when representing shapes in unknown scenarios, as expected for biological exploratory domains. This work proposes a novel strategy to automatically discover the shape categories in a set of unlabeled leaves by only using the leaf-shape information. In particular, we overcome the task of discovering shape categories from different plant species for three different biological settings. RESULTS The proposed method may successfully infer the unknown underlying shape categories with an F-score greater than 92%. CONCLUSIONS The approach also provided high levels of visual interpretability, an essential requirement in the description of biological objects. This method may support morphological analysis of biological objects in exploratory domains.
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Affiliation(s)
- Jorge Victorino
- Departament of System Engineering, Universidad Central, Bogotá, 110311 Colombia
- Department of System Engineering, Universidad Nacional, Bogotá, 111311 Colombia
| | - Francisco Gómez
- Department of Mathematics, Universidad Nacional, Bogotá, 111311 Colombia
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12
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Chitwood DH, Otoni WC. Erratum to: Morphometric analysis of Passiflora leaves: the relationship between landmarks of the vasculature and elliptical Fourier descriptors of the blade. Gigascience 2018; 6:1. [PMID: 29020753 PMCID: PMC5632300 DOI: 10.1093/gigascience/gix070] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Background Leaf shape among Passiflora species is spectacularly diverse. Underlying this diversity in leaf shape are profound changes in the patterning of the primary vasculature and laminar outgrowth. Each of these aspects of leaf morphology—vasculature and blade—provides different insights into leaf patterning. Results Here, we morphometrically analyze >3300 leaves from 40 different Passiflora species collected sequentially across the vine. Each leaf is measured in two different ways: using 1) 15 homologous Procrustes-adjusted landmarks of the vasculature, sinuses, and lobes; and 2) Elliptical Fourier Descriptors (EFDs), which quantify the outline of the leaf. The ability of landmarks, EFDs, and both datasets together are compared to determine their relative ability to predict species and node position within the vine. Pairwise correlation of x and y landmark coordinates and EFD harmonic coefficients reveals close associations between traits and insights into the relationship between vasculature and blade patterning. Conclusions Landmarks, more reflective of the vasculature, and EFDs, more reflective of the blade contour, describe both similar and distinct features of leaf morphology. Landmarks and EFDs vary in ability to predict species identity and node position in the vine and exhibit a correlational structure (both within landmark or EFD traits and between the two data types) revealing constraints between vascular and blade patterning underlying natural variation in leaf morphology among Passiflora species.
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Streubel S, Fritz MA, Teltow M, Kappel C, Sicard A. Successive duplication-divergence mechanisms at the RCO locus contributed to leaf shape diversity in the Brassicaceae. Development 2018; 145:145/8/dev164301. [PMID: 29691226 DOI: 10.1242/dev.164301] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2018] [Accepted: 03/21/2018] [Indexed: 12/19/2022]
Abstract
Gene duplication is a major driver for the increase of biological complexity. The divergence of newly duplicated paralogs may allow novel functions to evolve, while maintaining the ancestral one. Alternatively, partitioning the ancestral function among paralogs may allow parts of that role to follow independent evolutionary trajectories. We studied the REDUCED COMPLEXITY (RCO) locus, which contains three paralogs that have evolved through two independent events of gene duplication, and which underlies repeated events of leaf shape evolution within the Brassicaceae. In particular, we took advantage of the presence of three potentially functional paralogs in Capsella to investigate the extent of functional divergence among them. We demonstrate that the RCO copies control growth in different areas of the leaf. Consequently, the copies that are retained active in the different Brassicaceae lineages contribute to define the leaf dissection pattern. Our results further illustrate how successive gene duplication events and subsequent functional divergence can increase trait evolvability by providing independent evolutionary trajectories to specialized functions that have an additive effect on a given trait.
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Affiliation(s)
- Susanna Streubel
- Institut für Biochemie und Biologie, Universität Potsdam, Karl-Liebknecht-Str. 24-25, 14476 Potsdam-Golm, Germany
| | - Michael André Fritz
- Institut für Biochemie und Biologie, Universität Potsdam, Karl-Liebknecht-Str. 24-25, 14476 Potsdam-Golm, Germany
| | - Melanie Teltow
- Institut für Biochemie und Biologie, Universität Potsdam, Karl-Liebknecht-Str. 24-25, 14476 Potsdam-Golm, Germany
| | - Christian Kappel
- Institut für Biochemie und Biologie, Universität Potsdam, Karl-Liebknecht-Str. 24-25, 14476 Potsdam-Golm, Germany
| | - Adrien Sicard
- Institut für Biochemie und Biologie, Universität Potsdam, Karl-Liebknecht-Str. 24-25, 14476 Potsdam-Golm, Germany .,Uppsala Biocenter, Department of Plant Biology, BOX 7080, 750 07, Uppsala, Sweden
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14
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Chitwood DH, Otoni WC. Morphometric analysis of Passiflora leaves: the relationship between landmarks of the vasculature and elliptical Fourier descriptors of the blade. Gigascience 2017; 6:1-13. [PMID: 28369351 PMCID: PMC5437945 DOI: 10.1093/gigascience/giw008] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2016] [Accepted: 11/23/2016] [Indexed: 01/15/2023] Open
Abstract
Background Leaf shape among Passiflora species is spectacularly diverse. Underlying this diversity in leaf shape are profound changes in the patterning of the primary vasculature and laminar outgrowth. Each of these aspects of leaf morphology-vasculature and blade-provides different insights into leaf patterning. Results Here, we morphometrically analyze >3300 leaves from 40 different Passiflora species collected sequentially across the vine. Each leaf is measured in two different ways: using 1) 15 homologous Procrustes-adjusted landmarks of the vasculature, sinuses, and lobes; and 2) Elliptical Fourier Descriptors (EFDs), which quantify the outline of the leaf. The ability of landmarks, EFDs, and both datasets together are compared to determine their relative ability to predict species and node position within the vine. Pairwise correlation of x and y landmark coordinates and EFD harmonic coefficients reveals close associations between traits and insights into the relationship between vasculature and blade patterning. Conclusions Landmarks, more reflective of the vasculature, and EFDs, more reflective of the blade contour, describe both similar and distinct features of leaf morphology. Landmarks and EFDs vary in ability to predict species identity and node position in the vine and exhibit a correlational structure (both within landmark or EFD traits and between the two data types) revealing constraints between vascular and blade patterning underlying natural variation in leaf morphology among Passiflora species.
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Affiliation(s)
| | - Wagner C Otoni
- Departamento de Biologia Vegetal/BIOAGRO, Universidade Federal de Viçosa, Viçosa, MG, Brasil
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15
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Chitwood DH, Otoni WC. Morphometric analysis of Passiflora leaves: the relationship between landmarks of the vasculature and elliptical Fourier descriptors of the blade. Gigascience 2017. [PMID: 28369351 DOI: 10.5524/100251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/07/2023] Open
Abstract
BACKGROUND Leaf shape among Passiflora species is spectacularly diverse. Underlying this diversity in leaf shape are profound changes in the patterning of the primary vasculature and laminar outgrowth. Each of these aspects of leaf morphology-vasculature and blade-provides different insights into leaf patterning. RESULTS Here, we morphometrically analyze >3300 leaves from 40 different Passiflora species collected sequentially across the vine. Each leaf is measured in two different ways: using 1) 15 homologous Procrustes-adjusted landmarks of the vasculature, sinuses, and lobes; and 2) Elliptical Fourier Descriptors (EFDs), which quantify the outline of the leaf. The ability of landmarks, EFDs, and both datasets together are compared to determine their relative ability to predict species and node position within the vine. Pairwise correlation of x and y landmark coordinates and EFD harmonic coefficients reveals close associations between traits and insights into the relationship between vasculature and blade patterning. CONCLUSIONS Landmarks, more reflective of the vasculature, and EFDs, more reflective of the blade contour, describe both similar and distinct features of leaf morphology. Landmarks and EFDs vary in ability to predict species identity and node position in the vine and exhibit a correlational structure (both within landmark or EFD traits and between the two data types) revealing constraints between vascular and blade patterning underlying natural variation in leaf morphology among Passiflora species.
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Affiliation(s)
| | - Wagner C Otoni
- Departamento de Biologia Vegetal/BIOAGRO, Universidade Federal de Viçosa, Viçosa, MG, Brasil
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16
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Unger J, Merhof D, Renner S. Computer vision applied to herbarium specimens of German trees: testing the future utility of the millions of herbarium specimen images for automated identification. BMC Evol Biol 2016; 16:248. [PMID: 27852219 PMCID: PMC5112707 DOI: 10.1186/s12862-016-0827-5] [Citation(s) in RCA: 50] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2016] [Accepted: 11/10/2016] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Global Plants, a collaborative between JSTOR and some 300 herbaria, now contains about 2.48 million high-resolution images of plant specimens, a number that continues to grow, and collections that are digitizing their specimens at high resolution are allocating considerable recourses to the maintenance of computer hardware (e.g., servers) and to acquiring digital storage space. We here apply machine learning, specifically the training of a Support-Vector-Machine, to classify specimen images into categories, ideally at the species level, using the 26 most common tree species in Germany as a test case. RESULTS We designed an analysis pipeline and classification system consisting of segmentation, normalization, feature extraction, and classification steps and evaluated the system in two test sets, one with 26 species, the other with 17, in each case using 10 images per species of plants collected between 1820 and 1995, which simulates the empirical situation that most named species are represented in herbaria and databases, such as JSTOR, by few specimens. We achieved 73.21% accuracy of species assignments in the larger test set, and 84.88% in the smaller test set. CONCLUSIONS The results of this first application of a computer vision algorithm trained on images of herbarium specimens shows that despite the problem of overlapping leaves, leaf-architectural features can be used to categorize specimens to species with good accuracy. Computer vision is poised to play a significant role in future rapid identification at least for frequently collected genera or species in the European flora.
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Affiliation(s)
- Jakob Unger
- Institute of Imaging and Computer Vision, RWTH Aachen University, Kopernikusstr. 16, 52074, Aachen, Germany
| | - Dorit Merhof
- Institute of Imaging and Computer Vision, RWTH Aachen University, Kopernikusstr. 16, 52074, Aachen, Germany.
| | - Susanne Renner
- Systematic Botany and Mycology, University of Munich (LMU), Menzinger-Str. 67, 80638, Munich, Germany.
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17
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Yang W, Dong R, Liu L, Hu Z, Li J, Wang Y, Ding X, Chu Z. A novel mutant allele of SSI2 confers a better balance between disease resistance and plant growth inhibition on Arabidopsis thaliana. BMC Plant Biol 2016; 16:208. [PMID: 27669891 PMCID: PMC5037883 DOI: 10.1186/s12870-016-0898-x] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2016] [Accepted: 09/16/2016] [Indexed: 05/20/2023]
Abstract
BACKGROUND Resistance and growth are opposing characteristics in plants. SA INSENSITIVITY OF npr1-5 (SSI2) encodes a stearoyl-ACP desaturase (S-ACP DES) that has previously been reported to simultaneously enhance resistance and repress growth. RESULTS Here, we characterize ssi2-2, a novel mutant allele of SSI2 that has two amino acid substitutions. Compared with wild-type and two other mutants of SSI2, ssi2-2 showed intermediate phenotypes in growth size, punctate necrosis, resistance to the bacterial pathogen Pst DC3000, salicylic acid (SA) content, pathogenesis-related (PR) gene levels and 18:1 content. These results indicate that ssi2-2 is a weak mutant of SSI2. Additionally, by using ssi2-2 as an intermediate control, a number of differentially expressed genes were identified in transcriptome profiling analysis. These results suggest that constitutive expression of defense-related genes and repression of IAA signaling-associated genes is present in all SSI2 mutants. CONCLUSIONS Taken together, our results suggest that the weak ssi2-2 mutant maintains a better balance between plant immunity and vegetative growth than other mutants, consequently providing a basis to genetically engineer disease resistance in crop plants.
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Affiliation(s)
- Wei Yang
- State Key Laboratory of Crop Biology, College of Agronomy, Shandong Provincial Key Laboratory of Agricultural Microbiology, College of Plant Protection, Shandong Agricultural University, Tai’an, 271018 China
| | - Ran Dong
- State Key Laboratory of Crop Biology, College of Agronomy, Shandong Provincial Key Laboratory of Agricultural Microbiology, College of Plant Protection, Shandong Agricultural University, Tai’an, 271018 China
| | - Li Liu
- Key Laboratory for Economic Plants and Biotechnology, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201 China
| | - Zhubing Hu
- College of Life Sciences, Northwest A&F University, Yangling, Shanxi 712100 China
- Present address: Department of Plant Systems Biology, VIB, Ghent University, Technologiepark 927, 9052 Ghent, Belgium
| | - Jing Li
- College of Life Sciences, Northwest A&F University, Yangling, Shanxi 712100 China
| | - Yong Wang
- State Key Laboratory of Crop Biology, College of Agronomy, Shandong Provincial Key Laboratory of Agricultural Microbiology, College of Plant Protection, Shandong Agricultural University, Tai’an, 271018 China
| | - Xinhua Ding
- State Key Laboratory of Crop Biology, College of Agronomy, Shandong Provincial Key Laboratory of Agricultural Microbiology, College of Plant Protection, Shandong Agricultural University, Tai’an, 271018 China
| | - Zhaohui Chu
- State Key Laboratory of Crop Biology, College of Agronomy, Shandong Provincial Key Laboratory of Agricultural Microbiology, College of Plant Protection, Shandong Agricultural University, Tai’an, 271018 China
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18
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Ferris KG, Rushton T, Greenlee AB, Toll K, Blackman BK, Willis JH. Leaf shape evolution has a similar genetic architecture in three edaphic specialists within the Mimulus guttatus species complex. Ann Bot 2015; 116:213-23. [PMID: 26070644 PMCID: PMC4512191 DOI: 10.1093/aob/mcv080] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2015] [Revised: 03/06/2015] [Accepted: 04/24/2015] [Indexed: 05/13/2023]
Abstract
BACKGROUND AND AIMS The genetic basis of leaf shape has long interested botanists because leaf shape varies extensively across the plant kingdom and this variation is probably adaptive. However, knowledge of the genetic architecture of leaf shape variation in natural populations remains limited. This study examined the genetic architecture of leaf shape diversification among three edaphic specialists in the Mimulus guttatus species complex. Lobed and narrow leaves have evolved from the entire, round leaves of M. guttatus in M. laciniatus, M. nudatus and a polymorphic serpentine M. guttatus population (M2L). METHODS Bulk segregant analysis and next-generation sequencing were used to map quantitative trait loci (QTLs) that underlie leaf shape in an M. laciniatus × M. guttatus F2 population. To determine whether the same QTLs contribute to leaf shape variation in M. nudatus and M2L, F2s from M. guttatus × M. nudatus and lobed M2L × unlobed M. guttatus crosses were genotyped at QTLs from the bulk segregant analysis. KEY RESULTS Narrow and lobed leaf shapes in M. laciniatus, M. nudatus and M. guttatus are controlled by overlapping genetic regions. Several promising leaf shape candidate genes were found under each QTL. CONCLUSIONS The evolution of divergent leaf shape has taken place multiple times in the M. guttatus species complex and is associated with the occupation of dry, rocky environments. The genetic architecture of elongated and lobed leaves is similar across three species in this group. This may indicate that parallel genetic evolution from standing variation or new mutations is responsible for the putatively adaptive leaf shape variation in Mimulus.
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Affiliation(s)
- Kathleen G Ferris
- Department of Biology, Duke University, 125 Science Drive, Durham, NC 27705, USA and
| | - Tullia Rushton
- Department of Biology, Duke University, 125 Science Drive, Durham, NC 27705, USA and
| | - Anna B Greenlee
- Department of Biology, University of Virginia, 485 McCormick Road Charlottesville, VA 22904, USA
| | - Katherine Toll
- Department of Biology, Duke University, 125 Science Drive, Durham, NC 27705, USA and
| | - Benjamin K Blackman
- Department of Biology, University of Virginia, 485 McCormick Road Charlottesville, VA 22904, USA
| | - John H Willis
- Department of Biology, Duke University, 125 Science Drive, Durham, NC 27705, USA and
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Abstract
The independent origin and evolution of leaves as small, simple microphylls or larger, more complex megaphylls in plants has shaped and influenced the natural composition of the environment. Significant contributions have come from megaphyllous leaves, characterized usually as flat, thin lamina entrenched with photosynthetic organelles and stomata, which serve as the basis of primary productivity. During the course of evolution, the megaphylls have attained complexity not only in size or venation patterns but also in shape. This has fascinated scientists worldwide, and research has progressed tremendously in understanding the concept of leaf shape determination. Here, we review these studies and discuss the various factors that contributed towards shaping the leaf; initiated as a small bulge on the periphery of the shoot apical meristem (SAM) followed by asymmetric outgrowth, expansion and maturation until final shape is achieved. We found that the underlying factors governing these processes are inherently genetic: PIN1 and KNOX1 are indicators of leaf initiation, HD-ZIPIII, KANADI, and YABBY specify leaf outgrowth while ANGUSTIFOLIA3 and GROWTH-REGULATING FACTOR5 control leaf expansion and maturation; besides, recent research has identified new players such as APUM23, known to specify leaf polarity. In addition to genetic control, environmental factors also play an important role during the final adjustment of leaf shape. This immense amount of information available will serve as the basis for studying and understanding innovative leaf morphologies viz. the pitchers of the carnivorous plant Nepenthes which have evolved to provide additional support to the plant survival in its nutrient-deficient habitat. In hindsight, formation of the pitcher tube in Nepenthes might involve the recruitment of similar genetic mechanisms that occur during sympetaly in Petunia.
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Affiliation(s)
- Jeremy Dkhar
- Stress Physiology and Molecular Biology Laboratory, School of Life Sciences, Jawaharlal Nehru University, New Delhi, 110067 India
| | - Ashwani Pareek
- Stress Physiology and Molecular Biology Laboratory, School of Life Sciences, Jawaharlal Nehru University, New Delhi, 110067 India
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Park W, Feng Y, Ahn SJ. Alteration of leaf shape, improved metal tolerance, and productivity of seed by overexpression of CsHMA3 in Camelina sativa. Biotechnol Biofuels 2014; 7:96. [PMID: 25018780 PMCID: PMC4094532 DOI: 10.1186/1754-6834-7-96] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2014] [Accepted: 06/11/2014] [Indexed: 05/29/2023]
Abstract
BACKGROUND Camelina sativa (L.) Crantz, known by such popular names as "gold-of-pleasure" and "false flax," is an alternative oilseed crop for biofuel production and can be grown in harsh environments. Considerable interest is now being given to the new concept of the development of a fusion plant which can be used as a soil remediation plant for ground contaminated by heavy metals as well as a bioenergy crop. However, knowledge of the transport processes for heavy metals across Camelina plant membranes is still rudimentary. RESULTS Firstly, to investigate whether Camelina HMA (heavy metal P1B-ATPase) genes could be used in such a plant, we analyzed the expression patterns of eight HMA genes in Camelina (taken from the root, leaf, stem, flower, and silique). CsHMA3 genes were expressed in all organs. In addition, CsHMA3 was induced in roots and leaves especially after Pb treatment. Heterogeneous expression of CsHMA3 complemented the Pb- or Zn-sensitive phenotype of Δycf1 or Δzrc1 yeast mutant strains. Subsequently, we cloned and overexpressed CsHMA3 in Camelina. The root growth of transgenic lines was better than that in the wild-type plant under heavy metal stress (for Cd, Pb, and Zn). In particular, the transgenic lines showed enhanced Pb tolerance in a wide range of Pb concentrations. Furthermore, the Pb and Zn content in the shoots of the transgenic lines were higher than those in the wild-type plant. These results suggest that overexpression of CsHMA3 might enhance Pb and Zn tolerance and translocation. Also, the transgenic lines displayed a wider leaf shape compared with the wild-type plant due to an induction of genes related to leaf width growth and showed a greater total seed yield compared to the wild type under heavy metal stress. CONCLUSIONS Our data obtained from physiological and functional analyses using CsHMA3 overexpression plants will be useful to develop a multifunctional plant that can improve the productivity of a bioenergy crop and simultaneously be used to purify an area contaminated by various heavy metals.
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Affiliation(s)
- Won Park
- Bioenergy Research Center, Department of Bioenergy Science and Technology, Chonnam National University, Gwangju, Republic of Korea
| | - Yufeng Feng
- Bioenergy Research Center, Department of Bioenergy Science and Technology, Chonnam National University, Gwangju, Republic of Korea
| | - Sung-Ju Ahn
- Bioenergy Research Center, Department of Bioenergy Science and Technology, Chonnam National University, Gwangju, Republic of Korea
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Pahari S, Cormark RD, Blackshaw MT, Liu C, Erickson JL, Schultz EA. Arabidopsis UNHINGED encodes a VPS51 homolog and reveals a role for the GARP complex in leaf shape and vein patterning. Development 2014; 141:1894-905. [PMID: 24757006 DOI: 10.1242/dev.099333] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Asymmetric localization of PIN proteins controls directionality of auxin transport and many aspects of plant development. Directionality of PIN1 within the marginal epidermis and the presumptive veins of developing leaf primordia is crucial for establishing leaf vein pattern. One mechanism that controls PIN protein distribution within the cell membranes is endocytosis and subsequent transport to the vacuole for degradation. The Arabidopsis mutant unhinged-1 (unh-1) has simpler leaf venation with distal non-meeting of the secondary veins and fewer higher order veins, a narrower leaf with prominent serrations, and reduced root and shoot growth. We identify UNH as the Arabidopsis vacuolar protein sorting 51 (VPS51) homolog, a member of the Arabidopsis Golgi-associated retrograde protein (GARP) complex, and show that UNH interacts with VPS52, another member of the complex and colocalizes with trans Golgi network and pre-vacuolar complex markers. The GARP complex in yeast and metazoans retrieves vacuolar sorting receptors to the trans-Golgi network and is important in sorting proteins for lysosomal degradation. We show that vacuolar targeting is reduced in unh-1. In the epidermal cells of unh-1 leaf margins, PIN1 expression is expanded. The unh-1 leaf phenotype is partially suppressed by pin1 and cuc2-3 mutations, supporting the idea that the phenotype results from expanded PIN1 expression in the marginal epidermis. Our results suggest that UNH is important for reducing expression of PIN1 within margin cells, possibly by targeting PIN1 to the lytic vacuole.
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Affiliation(s)
- Shankar Pahari
- Department of Biological Sciences, University of Lethbridge, Lethbridge, AB TIK 3M4, Canada
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