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Ashayeri H, Jafarizadeh A, Yousefi M, Farhadi F, Javadzadeh A. Retinal imaging and Alzheimer's disease: a future powered by Artificial Intelligence. Graefes Arch Clin Exp Ophthalmol 2024:10.1007/s00417-024-06394-0. [PMID: 38358524 DOI: 10.1007/s00417-024-06394-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 01/22/2024] [Accepted: 01/30/2024] [Indexed: 02/16/2024] Open
Abstract
Alzheimer's disease (AD) is a neurodegenerative condition that primarily affects brain tissue. Because the retina and brain share the same embryonic origin, visual deficits have been reported in AD patients. Artificial Intelligence (AI) has recently received a lot of attention due to its immense power to process and detect image hallmarks and make clinical decisions (like diagnosis) based on images. Since retinal changes have been reported in AD patients, AI is being proposed to process images to predict, diagnose, and prognosis AD. As a result, the purpose of this review was to discuss the use of AI trained on retinal images of AD patients. According to previous research, AD patients experience retinal thickness and retinal vessel density changes, which can occasionally occur before the onset of the disease's clinical symptoms. AI and machine vision can detect and use these changes in the domains of disease prediction, diagnosis, and prognosis. As a result, not only have unique algorithms been developed for this condition, but also databases such as the Retinal OCTA Segmentation dataset (ROSE) have been constructed for this purpose. The achievement of high accuracy, sensitivity, and specificity in the classification of retinal images between AD and healthy groups is one of the major breakthroughs in using AI based on retinal images for AD. It is fascinating that researchers could pinpoint individuals with a positive family history of AD based on the properties of their eyes. In conclusion, the growing application of AI in medicine promises its future position in processing different aspects of patients with AD, but we need cohort studies to determine whether it can help to follow up with healthy persons at risk of AD for a quicker diagnosis or assess the prognosis of patients with AD.
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Affiliation(s)
- Hamidreza Ashayeri
- Neuroscience Research Center (NSRC), Tabriz University of Medical Sciences, Tabriz, Iran
| | - Ali Jafarizadeh
- Nikookari Eye Center, Tabriz University of Medical Sciences, Tabriz, Iran
| | - Milad Yousefi
- Faculty of Mathematics, Statistics and Computer Sciences, University of Tabriz, Tabriz, Iran
| | - Fereshteh Farhadi
- Nikookari Eye Center, Tabriz University of Medical Sciences, Tabriz, Iran
| | - Alireza Javadzadeh
- Department of Ophthalmology, Nikookari Eye Center, Tabriz University of Medical Sciences, Tabriz, Iran.
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Hu J, Qiu L, Wang H, Zhang J. Semi-supervised point consistency network for retinal artery/vein classification. Comput Biol Med 2024; 168:107633. [PMID: 37992471 DOI: 10.1016/j.compbiomed.2023.107633] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2023] [Revised: 10/02/2023] [Accepted: 10/23/2023] [Indexed: 11/24/2023]
Abstract
Recent deep learning methods with convolutional neural networks (CNNs) have boosted advance prosperity of medical image analysis and expedited the automatic retinal artery/vein (A/V) classification. However, it is challenging for these CNN-based approaches in two aspects: (1) specific tubular structures and subtle variations in appearance, contrast, and geometry, which tend to be ignored in CNNs with network layer increasing; (2) limited well-labeled data for supervised segmentation of retinal vessels, which may hinder the effectiveness of deep learning methods. To address these issues, we propose a novel semi-supervised point consistency network (SPC-Net) for retinal A/V classification. SPC-Net consists of an A/V classification (AVC) module and a multi-class point consistency (MPC) module. The AVC module adopts an encoder-decoder segmentation network to generate the prediction probability map of A/V for supervised learning. The MPC module introduces point set representations to adaptively generate point set classification maps of the arteriovenous skeleton, which enjoys its prediction flexibility and consistency (i.e. point consistency) to effectively alleviate arteriovenous confusion. In addition, we propose a consistency regularization between the predicted A/V classification probability maps and point set representations maps for unlabeled data to explore the inherent segmentation perturbation of the point consistency, reducing the need for annotated data. We validate our method on two typical public datasets (DRIVE, HRF) and a private dataset (TR280) with different resolutions. Extensive qualitative and quantitative experimental results demonstrate the effectiveness of our proposed method for supervised and semi-supervised learning.
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Affiliation(s)
- Jingfei Hu
- School of Biological Science and Medical Engineering, Beihang University, Beijing, 100191, China; Hefei Innovation Research Institute, Beihang University, Hefei, 230012, Anhui, China
| | - Linwei Qiu
- School of Biological Science and Medical Engineering, Beihang University, Beijing, 100191, China; Hefei Innovation Research Institute, Beihang University, Hefei, 230012, Anhui, China
| | - Hua Wang
- School of Biological Science and Medical Engineering, Beihang University, Beijing, 100191, China; Hefei Innovation Research Institute, Beihang University, Hefei, 230012, Anhui, China
| | - Jicong Zhang
- School of Biological Science and Medical Engineering, Beihang University, Beijing, 100191, China; Hefei Innovation Research Institute, Beihang University, Hefei, 230012, Anhui, China; Beijing Advanced Innovation Centre for Big Data-Based Precision Medicine, Beihang University, Beijing, 100083, China.
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3
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Rafay A, Asghar Z, Manzoor H, Hussain W. EyeCNN: exploring the potential of convolutional neural networks for identification of multiple eye diseases through retinal imagery. Int Ophthalmol 2023; 43:3569-3586. [PMID: 37291412 DOI: 10.1007/s10792-023-02764-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Accepted: 05/21/2023] [Indexed: 06/10/2023]
Abstract
BACKGROUND The eyes are the most important part of the human body as these are directly connected to the brain and help us perceive the imagery in daily life whereas, eye diseases are mostly ignored and underestimated until it is too late. Diagnosing eye disorders through manual diagnosis by the physician can be very costly and time taking. OBJECTIVE Thus, to tackle this, a novel method namely EyeCNN is proposed for identifying eye diseases through retinal images using EfficientNet B3. METHODS A dataset of retinal imagery of three diseases, i.e. Diabetic Retinopathy, Glaucoma, and Cataract is used to train 12 convolutional networks while EfficientNet B3 was the topperforming model out of all 12 models with a testing accuracy of 94.30%. RESULTS After preprocessing of the dataset and training of models, various experimentations were performed to see where our model stands. The evaluation was performed using some well-defined measures and the final model was deployed on the Streamlit server as a prototype for public usage. The proposed model has the potential to help diagnose eye diseases early, which can facilitate timely treatment. CONCLUSION The use of EyeCNN for classifying eye diseases has the potential to aid ophthalmologists in diagnosing conditions accurately and efficiently. This research may also lead to a deeper understanding of these diseases and it may lead to new treatments. The webserver of EyeCNN can be accessed at ( https://abdulrafay97-eyecnn-app-rd9wgz.streamlit.app/ ).
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Affiliation(s)
- Abdul Rafay
- Department of Computer Science, School of Systems and Technology, University of Management and Technology, Lahore, Pakistan
| | - Zaeem Asghar
- Department of Computer Science, School of Systems and Technology, University of Management and Technology, Lahore, Pakistan
| | - Hamza Manzoor
- Department of Computer Science, School of Systems and Technology, University of Management and Technology, Lahore, Pakistan
| | - Waqar Hussain
- Department of Artificial Intelligence, School of Systems and Technology, University of Management and Technology, Lahore, Pakistan.
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Li Y, Lao Q, Kang Q, Jiang Z, Du S, Zhang S, Li K. Self-supervised anomaly detection, staging and segmentation for retinal images. Med Image Anal 2023; 87:102805. [PMID: 37104995 DOI: 10.1016/j.media.2023.102805] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Revised: 11/14/2022] [Accepted: 03/30/2023] [Indexed: 04/29/2023]
Abstract
Unsupervised anomaly detection (UAD) is to detect anomalies through learning the distribution of normal data without labels and therefore has a wide application in medical images by alleviating the burden of collecting annotated medical data. Current UAD methods mostly learn the normal data by the reconstruction of the original input, but often lack the consideration of any prior information that has semantic meanings. In this paper, we first propose a universal unsupervised anomaly detection framework SSL-AnoVAE, which utilizes a self-supervised learning (SSL) module for providing more fine-grained semantics depending on the to-be detected anomalies in the retinal images. We also explore the relationship between the data transformation adopted in the SSL module and the quality of anomaly detection for retinal images. Moreover, to take full advantage of the proposed SSL-AnoVAE and apply towards clinical usages for computer-aided diagnosis of retinal-related diseases, we further propose to stage and segment the anomalies in retinal images detected by SSL-AnoVAE in an unsupervised manner. Experimental results demonstrate the effectiveness of our proposed method for unsupervised anomaly detection, staging and segmentation on both retinal optical coherence tomography images and color fundus photograph images.
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Affiliation(s)
- Yiyue Li
- Department of Ophthalmology and West China Biomedical Big Data Center, West China Hospital, Sichuan University, Chengdu, Sichuan, 610041, China; West China Biomedical Big Data Center, Med-X Center for Informatics, Sichuan University, Chengdu, Sichuan, 610041, China
| | - Qicheng Lao
- School of Artificial Intelligence, Beijing University of Posts and Telecommunications, Beijing, 100876, China; Shanghai Artificial Intelligence Laboratory, Shanghai, 200030, China.
| | - Qingbo Kang
- West China Biomedical Big Data Center, Med-X Center for Informatics, Sichuan University, Chengdu, Sichuan, 610041, China; Shanghai Artificial Intelligence Laboratory, Shanghai, 200030, China
| | - Zekun Jiang
- West China Biomedical Big Data Center, Med-X Center for Informatics, Sichuan University, Chengdu, Sichuan, 610041, China
| | - Shiyi Du
- West China Biomedical Big Data Center, Med-X Center for Informatics, Sichuan University, Chengdu, Sichuan, 610041, China
| | - Shaoting Zhang
- Shanghai Artificial Intelligence Laboratory, Shanghai, 200030, China
| | - Kang Li
- West China Biomedical Big Data Center, Med-X Center for Informatics, Sichuan University, Chengdu, Sichuan, 610041, China; Sichuan University Pittsburgh Institute, Chengdu, Sichuan, 610065, China; Shanghai Artificial Intelligence Laboratory, Shanghai, 200030, China.
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Badawi SA, Fraz MM, Shehzad M, Mahmood I, Javed S, Mosalam E, Nileshwar AK. Detection and Grading of Hypertensive Retinopathy Using Vessels Tortuosity and Arteriovenous Ratio. J Digit Imaging 2022; 35:281-301. [PMID: 35013827 PMCID: PMC8921404 DOI: 10.1007/s10278-021-00545-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Revised: 11/09/2021] [Accepted: 11/11/2021] [Indexed: 10/19/2022] Open
Abstract
Hypertensive retinopathy (HR) refers to changes in the morphological diameter of the retinal vessels due to persistent high blood pressure. Early detection of such changes helps in preventing blindness or even death due to stroke. These changes can be quantified by computing the arteriovenous ratio and the tortuosity severity in the retinal vasculature. This paper presents a decision support system for detecting and grading HR using morphometric analysis of retinal vasculature, particularly measuring the arteriovenous ratio (AVR) and retinal vessel tortuosity. In the first step, the retinal blood vessels are segmented and classified as arteries and veins. Then, the width of arteries and veins is measured within the region of interest around the optic disk. Next, a new iterative method is proposed to compute the AVR from the caliber measurements of arteries and veins using Parr-Hubbard and Knudtson methods. Moreover, the retinal vessel tortuosity severity index is computed for each image using 14 tortuosity severity metrics. In the end, a hybrid decision support system is proposed for the detection and grading of HR using AVR and tortuosity severity index. Furthermore, we present a new publicly available retinal vessel morphometry (RVM) dataset to evaluate the proposed methodology. The RVM dataset contains 504 retinal images with pixel-level annotations for vessel segmentation, artery/vein classification, and optic disk localization. The image-level labels for vessel tortuosity index and HR grade are also available. The proposed methods of iterative AVR measurement, tortuosity index, and HR grading are evaluated using the new RVM dataset. The results indicate that the proposed method gives superior performance than existing methods. The presented methodology is a novel advancement in automated detection and grading of HR, which can potentially be used as a clinical decision support system.
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Affiliation(s)
- Sufian A Badawi
- School of Electrical Engineering and Computer Science, National University of Sciences and Technology (NUST), Islamabad, Pakistan
| | - Muhammad Moazam Fraz
- School of Electrical Engineering and Computer Science, National University of Sciences and Technology (NUST), Islamabad, Pakistan.
| | - Muhammad Shehzad
- School of Electrical Engineering and Computer Science, National University of Sciences and Technology (NUST), Islamabad, Pakistan
| | - Imran Mahmood
- School of Electrical Engineering and Computer Science, National University of Sciences and Technology (NUST), Islamabad, Pakistan
| | - Sajid Javed
- Department of Electrical Engineering and Computer Science, Khalifa University, Abu Dhabi, UAE
| | - Emad Mosalam
- Department of Ophthalmology, RAK Medical and Health Sciences University, Ras Al Khaimah, UAE.,Department of Ophthalmology, Saqr Hospital, Ministry of Health and Prevention, Ras Al Khaimah, UAE
| | - Ajay Kamath Nileshwar
- Department of Ophthalmology, RAK Medical and Health Sciences University, Ras Al Khaimah, UAE.,Department of Ophthalmology, Saqr Hospital, Ministry of Health and Prevention, Ras Al Khaimah, UAE
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6
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Abstract
Glaucoma is a silent progressive eye disease that is among the leading causes of irreversible blindness. Early detection and proper treatment of glaucoma can limit severe vision impairments associated with advanced stages of the disease. Periodic automatic screening can help in the early detection of glaucoma while reducing the workload on expert ophthalmologists. In this work, a wavelet-based glaucoma detection algorithm is proposed for real-time screening systems. A combination of wavelet-based statistical and textural features computed from the detected optic disc region is used to determine whether a retinal image is healthy or glaucomatous. Two public datasets having different resolutions were considered in the performance analysis of the proposed algorithm. An accuracy of 96.7% and area under receiver operating curve (AUC) of 94.7% were achieved for the high-resolution dataset. Analysis of the wavelet-based statistical and textural features using three different methods showed their relevance for glaucoma detection. Furthermore, the proposed algorithm is shown to be suitable for real-time applications as it requires less than 3 s for processing the high-resolution retinal images.
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Kang H, Gao Y, Guo S, Xu X, Li T, Wang K. AVNet: A retinal artery/vein classification network with category-attention weighted fusion. Comput Methods Programs Biomed 2020; 195:105629. [PMID: 32634648 DOI: 10.1016/j.cmpb.2020.105629] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2020] [Accepted: 06/21/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND AND OBJECTIVE Automatic artery/vein (A/V) classification in retinal images is of great importance in detecting vascular abnormalities, which may provide biomarkers for early diagnosis of many systemic diseases. It is intuitive to apply popular deep semantic segmentation network for A/V classification. However, the model is required to provide powerful representation ability since vessel is much more complex than general objects. Moreover, deep network may lead to inconsistent classification results for the same vessel due to the lack of structured optimization objective. METHODS In this paper, we propose a novel segmentation network named AVNet, which effectively enhances the classification ability of the model by integrating category-attention weighted fusion (CWF) module, significantly improving the pixel-level A/V classification results. Then, a graph based vascular structure reconstruction (VSR) algorithm is employed to reduce the segment-wise inconsistency, verifying the effect of the graph model on noisy vessel segmentation results. RESULTS The proposed method has been verified on three datasets, i.e. DRIVE, LES-AV and WIDE. AVNet achieves pixel-level accuracies of 90.62%, 90.34%, and 93.16%, respectively, and VSR further improves the performance by 0.19%, 1.85% and 0.64%, achieving the state-of-the-art results on these three datasets. CONCLUSION The proposed method achieves competitive performance in A/V classification task.
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Affiliation(s)
- Hong Kang
- College of Computer Science, Nankai University, Tianjin, China; Beijing Shanggong Medical Technology Co. Ltd., China
| | - Yingqi Gao
- College of Computer Science, Nankai University, Tianjin, China
| | - Song Guo
- College of Computer Science, Nankai University, Tianjin, China
| | - Xia Xu
- College of Computer Science, Nankai University, Tianjin, China
| | - Tao Li
- College of Computer Science, Nankai University, Tianjin, China; State Key Laboratory of Computer Architecture, Institute of Computing Technology, Chinese Academy of Science, Beijing 100190, China
| | - Kai Wang
- College of Computer Science, Nankai University, Tianjin, China; Key Laboratory for Medical Data Analysis and Statistical Research of Tianjin, China.
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Zago GT, Andreão RV, Dorizzi B, Teatini Salles EO. Diabetic retinopathy detection using red lesion localization and convolutional neural networks. Comput Biol Med 2020; 116:103537. [PMID: 31747632 DOI: 10.1016/j.compbiomed.2019.103537] [Citation(s) in RCA: 43] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2019] [Revised: 11/08/2019] [Accepted: 11/10/2019] [Indexed: 11/21/2022]
Abstract
Detecting the early signs of diabetic retinopathy (DR) is essential, as timely treatment might reduce or even prevent vision loss. Moreover, automatically localizing the regions of the retinal image that might contain lesions can favorably assist specialists in the task of detection. In this study, we designed a lesion localization model using a deep network patch-based approach. Our goal was to reduce the complexity of the model while improving its performance. For this purpose, we designed an efficient procedure (including two convolutional neural network models) for selecting the training patches, such that the challenging examples would be given special attention during the training process. Using the labeling of the region, a DR decision can be given to the initial image, without the need for special training. The model is trained on the Standard Diabetic Retinopathy Database, Calibration Level 1 (DIARETDB1) database and is tested on several databases (including Messidor) without any further adaptation. It reaches an area under the receiver operating characteristic curve of 0.912-95%CI(0.897-0.928) for DR screening, and a sensitivity of 0.940-95%CI(0.921-0.959). These values are competitive with other state-of-the-art approaches.
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Bellemo V, Lim G, Rim TH, Tan GSW, Cheung CY, Sadda S, He MG, Tufail A, Lee ML, Hsu W, Ting DSW. Artificial Intelligence Screening for Diabetic Retinopathy: the Real-World Emerging Application. Curr Diab Rep 2019; 19:72. [PMID: 31367962 DOI: 10.1007/s11892-019-1189-3] [Citation(s) in RCA: 73] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
PURPOSE OF REVIEW This paper systematically reviews the recent progress in diabetic retinopathy screening. It provides an integrated overview of the current state of knowledge of emerging techniques using artificial intelligence integration in national screening programs around the world. Existing methodological approaches and research insights are evaluated. An understanding of existing gaps and future directions is created. RECENT FINDINGS Over the past decades, artificial intelligence has emerged into the scientific consciousness with breakthroughs that are sparking increasing interest among computer science and medical communities. Specifically, machine learning and deep learning (a subtype of machine learning) applications of artificial intelligence are spreading into areas that previously were thought to be only the purview of humans, and a number of applications in ophthalmology field have been explored. Multiple studies all around the world have demonstrated that such systems can behave on par with clinical experts with robust diagnostic performance in diabetic retinopathy diagnosis. However, only few tools have been evaluated in clinical prospective studies. Given the rapid and impressive progress of artificial intelligence technologies, the implementation of deep learning systems into routinely practiced diabetic retinopathy screening could represent a cost-effective alternative to help reduce the incidence of preventable blindness around the world.
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Affiliation(s)
- Valentina Bellemo
- Singapore National Eye Centre, Singapore Eye Research Institute, 11 Third Hospital Avenue, Singapore, 168751, Singapore
| | - Gilbert Lim
- Singapore National Eye Centre, Singapore Eye Research Institute, 11 Third Hospital Avenue, Singapore, 168751, Singapore
- School of Computing, National University of Singapore, Singapore, Singapore
| | - Tyler Hyungtaek Rim
- Singapore National Eye Centre, Singapore Eye Research Institute, 11 Third Hospital Avenue, Singapore, 168751, Singapore
- Duke-NUS Medical School, Singapore, Singapore
| | - Gavin S W Tan
- Singapore National Eye Centre, Singapore Eye Research Institute, 11 Third Hospital Avenue, Singapore, 168751, Singapore
- Duke-NUS Medical School, Singapore, Singapore
| | - Carol Y Cheung
- Department of Ophthalmology and Visual Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong
| | - SriniVas Sadda
- Doheny Eye Institute, University of California, Los Angeles, CA, USA
| | - Ming-Guang He
- Center of Eye Research Australia, Melbourne, Victoria, Australia
| | - Adnan Tufail
- Moorfields Eye Hospital & Institute of Ophthalmology, UCL, London, UK
| | - Mong Li Lee
- School of Computing, National University of Singapore, Singapore, Singapore
| | - Wynne Hsu
- School of Computing, National University of Singapore, Singapore, Singapore
| | - Daniel Shu Wei Ting
- Singapore National Eye Centre, Singapore Eye Research Institute, 11 Third Hospital Avenue, Singapore, 168751, Singapore.
- Duke-NUS Medical School, Singapore, Singapore.
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Martinez-Perez ME, Witt N, Parker KH, Hughes AD, Thom SAM. Automatic optic disc detection in colour fundus images by means of multispectral analysis and information content. PeerJ 2019; 7:e7119. [PMID: 31293825 PMCID: PMC6599671 DOI: 10.7717/peerj.7119] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2018] [Accepted: 05/09/2019] [Indexed: 11/20/2022] Open
Abstract
The optic disc (OD) in retinal fundus images is widely used as a reference in computer-based systems for the measurement of the severity of retinal disease. A number of algorithms have been published in the past 5 years to locate and measure the OD in digital fundus images. Our proposed algorithm, automatically: (i) uses the three channels (RGB) of the digital colour image to locate the region of interest (ROI) where the OD lies, (ii) measures the Shannon information content per channel in the ROI, to decide which channel is most appropriate for searching for the OD centre using the circular Hough transform. A series of evaluations were undertaken to test our hypothesis that using the three channels gives a better performance than a single channel. Three different databases were used for evaluation purposes with a total of 2,371 colour images giving a misdetection error of 3% in the localisation of the centre of the OD. We find that the area determined by our algorithm which assumes that the OD is circular, is similar to that found by other algorithms that detected the shape of the OD. Five metrics were measured for comparison with other recent studies. Combining the two databases where expert delineation of the OD is available (1,240 images), the average results for our multispectral algorithm are: TPR = 0.879, FPR = 0.003, Accuracy = 0.994, Overlap = 80.6% and Dice index = 0.878.
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Affiliation(s)
- M Elena Martinez-Perez
- Institute of Research on Applied Mathematics and Systems, Department of Computer Science, Universidad Nacional Autónoma de México, Mexico City, Mexico.,National Heart & Lung Institute, Imperial College, London, UK
| | - Nicholas Witt
- Department of Bioengineering, Imperial College, London, UK
| | - Kim H Parker
- Department of Bioengineering, Imperial College, London, UK
| | - Alun D Hughes
- National Heart & Lung Institute, Imperial College, London, UK.,Institute of Cardiovascular Sciences, University College London, London, UK
| | - Simon A M Thom
- National Heart & Lung Institute, Imperial College, London, UK
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11
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Dhivyaa CR, Vijayakumar M. An Effective Detection Mechanism for Localizing Macular Region and Grading Maculopathy. J Med Syst 2019; 43:53. [PMID: 30693385 DOI: 10.1007/s10916-019-1163-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2018] [Accepted: 01/08/2019] [Indexed: 11/24/2022]
Abstract
The eye disease is prominent in many nations including India and is said to affect up to 80% patients having diabetes. Diabetic Retinopathy is the medical term for denoting the damages to retina caused due to diabetes mellitus. Implying K means Clustering algorithm for coarse segmentation, hard distils are identified with better accuracy than the classical approaches. The variance based methods for segmenting hard distils are reviewed in the surveys and had to be improved. To remove the background features from the picture and conserve computational costs, a mathematical morphological method is used to reconstruct the image features for better segmentation. The results obtained for 96.4% sensitivity and 97.2% specificity. Along with this advantage, a graphical user interface is developed which will simplify the usage of this system. This model will divide the fragments into regions of interests having lesions and normal regions carrying normal features. After this segmentation, ophthalmologists will utilize the results to grade diabetic retinopathy and devise a treatment plan.
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Affiliation(s)
- C R Dhivyaa
- Computer Science and Engineering, Nandha College of Technology, Erode, India.
| | - M Vijayakumar
- Computer Science and Engineering, Nandha College of Technology, Erode, India
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12
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Abstract
Segmentation of the retinal blood vessels using filtering techniques is a widely used step in the development of an automated system for diagnostic retinal image analysis. This paper optimized the blood vessel segmentation, by extending the trainable B-COSFIRE filter via identification of more optimal parameters. The filter parameters are introduced using an optimization procedure to three public datasets (STARE, DRIVE, and CHASE-DB1). The suggested approach considers analyzing thresholding parameters selection followed by application of background artifacts removal techniques. The approach results are better than the other state of the art methods used for vessel segmentation. ANOVA analysis technique is also used to identify the most significant parameters that are impacting the performance results (p-value ¡ 0.05). The proposed enhancement has improved the vessel segmentation accuracy in DRIVE, STARE and CHASE-DB1 to 95.47, 95.30 and 95.30, respectively.
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Affiliation(s)
- Sufian A. Badawi
- School of Electrical Engineering and Computer Science, National University of Sciences and Technology, Islamabad, Pakistan
| | - Muhammad Moazam Fraz
- School of Electrical Engineering and Computer Science, National University of Sciences and Technology, Islamabad, Pakistan
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13
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Abstract
BACKGROUND Diabetic macular edema (DME) is one of the severe complication of diabetic retinopathy causing severe vision loss and leads to blindness in severe cases if left untreated. OBJECTIVE To grade the severity of DME in retinal images. METHODS Firstly, the macular is localized using its anatomical features and the information of the macula location with respect to the optic disc. Secondly, a novel method for the exudates detection is proposed. The possible exudate regions are segmented using vector quantization technique and formulated using a set of feature vectors. A semi-supervised learning with graph based classifier is employed to identify the true exudates. Thirdly, the disease severity is graded into different stages based on the location of exudates and the macula coordinates. RESULTS The results are obtained with the mean value of 0.975 and 0.942 for accuracy and F1-scrore, respectively. CONCLUSION The present work contributes to macula localization, exudate candidate identification with vector quantization and exudate candidate classification with semi-supervised learning. The proposed method and the state-of-the-art approaches are compared in terms of performance, and experimental results show the proposed system overcomes the challenge of the DME grading and demonstrate a promising effectiveness.
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Affiliation(s)
- Fulong Ren
- School of Computer Science and Engineering, Northeastern University, Shenyang, Liaoning, China.,Key Laboratory of Medical Image Computing of Ministry of Education, Northeastern University, Shenyang, Liaoning, China
| | - Peng Cao
- School of Computer Science and Engineering, Northeastern University, Shenyang, Liaoning, China.,Key Laboratory of Medical Image Computing of Ministry of Education, Northeastern University, Shenyang, Liaoning, China
| | - Dazhe Zhao
- School of Computer Science and Engineering, Northeastern University, Shenyang, Liaoning, China.,Key Laboratory of Medical Image Computing of Ministry of Education, Northeastern University, Shenyang, Liaoning, China
| | - Chao Wan
- Department of Ophthalmology, The First Hospital of China Medical University, Shenyang, Liaoning, China
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Zago GT, Andreão RV, Dorizzi B, Teatini Salles EO. Retinal image quality assessment using deep learning. Comput Biol Med 2018; 103:64-70. [PMID: 30340214 DOI: 10.1016/j.compbiomed.2018.10.004] [Citation(s) in RCA: 53] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Revised: 09/27/2018] [Accepted: 10/06/2018] [Indexed: 11/25/2022]
Abstract
Poor-quality retinal images do not allow an accurate medical diagnosis, and it is inconvenient for a patient to return to a medical center to repeat the fundus photography exam. In this paper, a robust automatic system is proposed to assess the quality of retinal images at the moment of the acquisition, aiming at assisting health care professionals during a fundus photography exam. We propose a convolutional neural network (CNN) pretrained on non-medical images for extracting general image features. The weights of the CNN are further adjusted via a fine-tuning procedure, resulting in a performant classifier obtained only with a small quantity of labeled images. The CNN performance was evaluated on two publicly available databases (i.e., DRIMDB and ELSA-Brasil) using two different procedures: intra-database and inter-database cross-validation. The CNN achieved an area under the curve (AUC) of 99.98% on DRIMDB and an AUC of 98.56% on ELSA-Brasil in the inter-database experiment, where training and testing were not performed on the same database. These results show the robustness of the proposed model to various image acquisitions without requiring special adaptation, thus making it a good candidate for use in operational clinical scenarios.
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Affiliation(s)
- Gabriel Tozatto Zago
- Department of Control and Automation Engineering, Instituto Federal do Espírito Santo, Brazil.
| | | | - Bernadette Dorizzi
- Télécom SudParis, Laboratoire SAMOVAR, 9 rue Charles Fourier, 91011, EVRY, France.
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15
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Welikala RA, Foster PJ, Whincup PH, Rudnicka AR, Owen CG, Strachan DP, Barman SA. Automated arteriole and venule classification using deep learning for retinal images from the UK Biobank cohort. Comput Biol Med 2017; 90:23-32. [PMID: 28917120 DOI: 10.1016/j.compbiomed.2017.09.005] [Citation(s) in RCA: 70] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2017] [Revised: 09/05/2017] [Accepted: 09/05/2017] [Indexed: 01/12/2023]
Abstract
The morphometric characteristics of the retinal vasculature are associated with future risk of many systemic and vascular diseases. However, analysis of data from large population based studies is needed to help resolve uncertainties in some of these associations. This requires automated systems that extract quantitative measures of vessel morphology from large numbers of retinal images. Associations between retinal vessel morphology and disease precursors/outcomes may be similar or opposing for arterioles and venules. Therefore, the accurate detection of the vessel type is an important element in such automated systems. This paper presents a deep learning approach for the automatic classification of arterioles and venules across the entire retinal image, including vessels located at the optic disc. This comprises of a convolutional neural network whose architecture contains six learned layers: three convolutional and three fully-connected. Complex patterns are automatically learnt from the data, which avoids the use of hand crafted features. The method is developed and evaluated using 835,914 centreline pixels derived from 100 retinal images selected from the 135,867 retinal images obtained at the UK Biobank (large population-based cohort study of middle aged and older adults) baseline examination. This is a challenging dataset in respect to image quality and hence arteriole/venule classification is required to be highly robust. The method achieves a significant increase in accuracy of 8.1% when compared to the baseline method, resulting in an arteriole/venule classification accuracy of 86.97% (per pixel basis) over the entire retinal image.
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Affiliation(s)
- R A Welikala
- School of Computer Science and Mathematics, Kingston University, Surrey, KT1 2EE, United Kingdom.
| | - P J Foster
- NIHR Biomedical Research Centre, Moorfields Eye Hospital, London, EC1V 2PD, United Kingdom; UCL Institute of Ophthalmology, London, EC1V 9EL, United Kingdom
| | - P H Whincup
- Population Health Research Institute, St. George's, University of London, London, SW17 0RE, United Kingdom
| | - A R Rudnicka
- Population Health Research Institute, St. George's, University of London, London, SW17 0RE, United Kingdom
| | - C G Owen
- Population Health Research Institute, St. George's, University of London, London, SW17 0RE, United Kingdom
| | - D P Strachan
- Population Health Research Institute, St. George's, University of London, London, SW17 0RE, United Kingdom
| | - S A Barman
- School of Computer Science and Mathematics, Kingston University, Surrey, KT1 2EE, United Kingdom
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16
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Rahebi J, Hardalaç F. A new approach to optic disc detection in human retinal images using the firefly algorithm. Med Biol Eng Comput 2015; 54:453-61. [PMID: 26093773 DOI: 10.1007/s11517-015-1330-7] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2014] [Accepted: 06/08/2015] [Indexed: 12/01/2022]
Abstract
There are various methods and algorithms to detect the optic discs in retinal images. In recent years, much attention has been given to the utilization of the intelligent algorithms. In this paper, we present a new automated method of optic disc detection in human retinal images using the firefly algorithm. The firefly intelligent algorithm is an emerging intelligent algorithm that was inspired by the social behavior of fireflies. The population in this algorithm includes the fireflies, each of which has a specific rate of lighting or fitness. In this method, the insects are compared two by two, and the less attractive insects can be observed to move toward the more attractive insects. Finally, one of the insects is selected as the most attractive, and this insect presents the optimum response to the problem in question. Here, we used the light intensity of the pixels of the retinal image pixels instead of firefly lightings. The movement of these insects due to local fluctuations produces different light intensity values in the images. Because the optic disc is the brightest area in the retinal images, all of the insects move toward brightest area and thus specify the location of the optic disc in the image. The results of implementation show that proposed algorithm could acquire an accuracy rate of 100 % in DRIVE dataset, 95 % in STARE dataset, and 94.38 % in DiaRetDB1 dataset. The results of implementation reveal high capability and accuracy of proposed algorithm in the detection of the optic disc from retinal images. Also, recorded required time for the detection of the optic disc in these images is 2.13 s for DRIVE dataset, 2.81 s for STARE dataset, and 3.52 s for DiaRetDB1 dataset accordingly. These time values are average value.
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Affiliation(s)
- Javad Rahebi
- Department of Electrical and Electronics Engineering, Gazi University, Ankara, Turkey.
| | - Fırat Hardalaç
- Department of Electrical and Electronics Engineering, Gazi University, Ankara, Turkey
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17
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Welikala RA, Fraz MM, Dehmeshki J, Hoppe A, Tah V, Mann S, Williamson TH, Barman SA. Genetic algorithm based feature selection combined with dual classification for the automated detection of proliferative diabetic retinopathy. Comput Med Imaging Graph 2015; 43:64-77. [PMID: 25841182 DOI: 10.1016/j.compmedimag.2015.03.003] [Citation(s) in RCA: 90] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2014] [Revised: 03/03/2015] [Accepted: 03/11/2015] [Indexed: 11/28/2022]
Abstract
Proliferative diabetic retinopathy (PDR) is a condition that carries a high risk of severe visual impairment. The hallmark of PDR is the growth of abnormal new vessels. In this paper, an automated method for the detection of new vessels from retinal images is presented. This method is based on a dual classification approach. Two vessel segmentation approaches are applied to create two separate binary vessel map which each hold vital information. Local morphology features are measured from each binary vessel map to produce two separate 4-D feature vectors. Independent classification is performed for each feature vector using a support vector machine (SVM) classifier. The system then combines these individual outcomes to produce a final decision. This is followed by the creation of additional features to generate 21-D feature vectors, which feed into a genetic algorithm based feature selection approach with the objective of finding feature subsets that improve the performance of the classification. Sensitivity and specificity results using a dataset of 60 images are 0.9138 and 0.9600, respectively, on a per patch basis and 1.000 and 0.975, respectively, on a per image basis.
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Affiliation(s)
- R A Welikala
- Digital Imaging Research Centre, Faculty of Science, Engineering and Computing, Kingston University, London, United Kingdom.
| | - M M Fraz
- Digital Imaging Research Centre, Faculty of Science, Engineering and Computing, Kingston University, London, United Kingdom.
| | - J Dehmeshki
- Digital Imaging Research Centre, Faculty of Science, Engineering and Computing, Kingston University, London, United Kingdom.
| | - A Hoppe
- Digital Imaging Research Centre, Faculty of Science, Engineering and Computing, Kingston University, London, United Kingdom.
| | - V Tah
- Medical Retina, Oxford Eye Hospital, Oxford, United Kingdom.
| | - S Mann
- Ophthalmology Department, St Thomas' Hospital, London, United Kingdom.
| | - T H Williamson
- Ophthalmology Department, St Thomas' Hospital, London, United Kingdom.
| | - S A Barman
- Digital Imaging Research Centre, Faculty of Science, Engineering and Computing, Kingston University, London, United Kingdom.
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18
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Welikala RA, Dehmeshki J, Hoppe A, Tah V, Mann S, Williamson TH, Barman SA. Automated detection of proliferative diabetic retinopathy using a modified line operator and dual classification. Comput Methods Programs Biomed 2014; 114:247-261. [PMID: 24636803 DOI: 10.1016/j.cmpb.2014.02.010] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2013] [Revised: 01/14/2014] [Accepted: 02/14/2014] [Indexed: 06/03/2023]
Abstract
Proliferative diabetic retinopathy (PDR) is a condition that carries a high risk of severe visual impairment. The hallmark of PDR is neovascularisation, the growth of abnormal new vessels. This paper describes an automated method for the detection of new vessels in retinal images. Two vessel segmentation approaches are applied, using the standard line operator and a novel modified line operator. The latter is designed to reduce false responses to non-vessel edges. Both generated binary vessel maps hold vital information which must be processed separately. This is achieved with a dual classification system. Local morphology features are measured from each binary vessel map to produce two separate feature sets. Independent classification is performed for each feature set using a support vector machine (SVM) classifier. The system then combines these individual classification outcomes to produce a final decision. Sensitivity and specificity results using a dataset of 60 images are 0.862 and 0.944 respectively on a per patch basis and 1.00 and 0.90 respectively on a per image basis.
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Affiliation(s)
- R A Welikala
- Digital Imaging Research Centre, Faculty of Science, Engineering and Computing, Kingston University, London, United Kingdom.
| | - J Dehmeshki
- Digital Imaging Research Centre, Faculty of Science, Engineering and Computing, Kingston University, London, United Kingdom
| | - A Hoppe
- Digital Imaging Research Centre, Faculty of Science, Engineering and Computing, Kingston University, London, United Kingdom
| | - V Tah
- Medical Retina, Oxford Eye Hospital, Oxford, United Kingdom
| | - S Mann
- Ophthalmology Department, St. Thomas' Hospital, London, United Kingdom
| | - T H Williamson
- Ophthalmology Department, St. Thomas' Hospital, London, United Kingdom
| | - S A Barman
- Digital Imaging Research Centre, Faculty of Science, Engineering and Computing, Kingston University, London, United Kingdom
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19
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Kaba D, Wang C, Li Y, Salazar-Gonzalez A, Liu X, Serag A. Retinal blood vessels extraction using probabilistic modelling. Health Inf Sci Syst 2014; 2:2. [PMID: 25825666 PMCID: PMC4376494 DOI: 10.1186/2047-2501-2-2] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2013] [Accepted: 10/22/2013] [Indexed: 12/01/2022] Open
Abstract
The analysis of retinal blood vessels plays an important role in detecting and treating retinal diseases. In this review, we present an automated method to segment blood vessels of fundus retinal image. The proposed method could be used to support a non-intrusive diagnosis in modern ophthalmology for early detection of retinal diseases, treatment evaluation or clinical study. This study combines the bias correction and an adaptive histogram equalisation to enhance the appearance of the blood vessels. Then the blood vessels are extracted using probabilistic modelling that is optimised by the expectation maximisation algorithm. The method is evaluated on fundus retinal images of STARE and DRIVE datasets. The experimental results are compared with some recently published methods of retinal blood vessels segmentation. The experimental results show that our method achieved the best overall performance and it is comparable to the performance of human experts.
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Affiliation(s)
- Djibril Kaba
- Department of Information Systems, Computing and Mathematics Brunel University, London, UK
| | - Chuang Wang
- Department of Information Systems, Computing and Mathematics Brunel University, London, UK
| | - Yongmin Li
- Department of Information Systems, Computing and Mathematics Brunel University, London, UK
| | - Ana Salazar-Gonzalez
- Department of Information Systems, Computing and Mathematics Brunel University, London, UK
| | - Xiaohui Liu
- Department of Information Systems, Computing and Mathematics Brunel University, London, UK
| | - Ahmed Serag
- Diagnostic Imaging and Radiology, Children's National Medical Center, 24105 Washington, DC USA
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20
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Lupaşcu CA, Tegolo D, Trucco E. Accurate estimation of retinal vessel width using bagged decision trees and an extended multiresolution Hermite model. Med Image Anal 2013; 17:1164-80. [PMID: 24001930 DOI: 10.1016/j.media.2013.07.006] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2012] [Revised: 07/20/2013] [Accepted: 07/29/2013] [Indexed: 11/16/2022]
Abstract
We present an algorithm estimating the width of retinal vessels in fundus camera images. The algorithm uses a novel parametric surface model of the cross-sectional intensities of vessels, and ensembles of bagged decision trees to estimate the local width from the parameters of the best-fit surface. We report comparative tests with REVIEW, currently the public database of reference for retinal width estimation, containing 16 images with 193 annotated vessel segments and 5066 profile points annotated manually by three independent experts. Comparative tests are reported also with our own set of 378 vessel widths selected sparsely in 38 images from the Tayside Scotland diabetic retinopathy screening programme and annotated manually by two clinicians. We obtain considerably better accuracies compared to leading methods in REVIEW tests and in Tayside tests. An important advantage of our method is its stability (success rate, i.e., meaningful measurement returned, of 100% on all REVIEW data sets and on the Tayside data set) compared to a variety of methods from the literature. We also find that results depend crucially on testing data and conditions, and discuss criteria for selecting a training set yielding optimal accuracy.
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Affiliation(s)
- Carmen Alina Lupaşcu
- VAMPIRE Project, Dipartimento di Matematica e Informatica, Università degli Studi di Palermo, Via Archirafi 34, 90123 Palermo, Italy.
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21
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Mirsharif Q, Tajeripour F, Pourreza H. Automated characterization of blood vessels as arteries and veins in retinal images. Comput Med Imaging Graph 2013; 37:607-17. [PMID: 23849699 DOI: 10.1016/j.compmedimag.2013.06.003] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2012] [Revised: 04/28/2013] [Accepted: 06/17/2013] [Indexed: 11/15/2022]
Abstract
In recent years researchers have found that alternations in arterial or venular tree of the retinal vasculature are associated with several public health problems such as diabetic retinopathy which is also the leading cause of blindness in the world. A prerequisite for automated assessment of subtle changes in arteries and veins, is to accurately separate those vessels from each other. This is a difficult task due to high similarity between arteries and veins in addition to variation of color and non-uniform illumination inter and intra retinal images. In this paper a novel structural and automated method is presented for artery/vein classification of blood vessels in retinal images. The proposed method consists of three main steps. In the first step, several image enhancement techniques are employed to improve the images. Then a specific feature extraction process is applied to separate major arteries from veins. Indeed, vessels are divided to smaller segments and feature extraction and vessel classification are applied to each small vessel segment instead of each vessel point. Finally, a post processing step is added to improve the results obtained from the previous step using structural characteristics of the retinal vascular network. In the last stage, vessel features at intersection and bifurcation points are processed for detection of arterial and venular sub trees. Ultimately vessel labels are revised by publishing the dominant label through each identified connected tree of arteries or veins. Evaluation of the proposed approach against two different datasets of retinal images including DRIVE database demonstrates the good performance and robustness of the method. The proposed method may be used for determination of arteriolar to venular diameter ratio in retinal images. Also the proposed method potentially allows for further investigation of labels of thinner arteries and veins which might be found by tracing them back to the major vessels.
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Affiliation(s)
- Qazaleh Mirsharif
- Department of Electrical and Computer Engineering, Shiraz University, Shiraz, Iran.
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