Transcription Profile and Genomic Variations of Oryctes Rhinoceros Nudivirus in Coconut Rhinoceros Beetles

Oryctes rhinoceros nudivirus (OrNV) is a double-stranded DNA (dsDNA) virus which has been used as a biocontrol agent to suppress the coconut rhinoceros beetle (Oryctes rhinoceros) in Southeast Asia and the Pacific Islands. A new wave of O. rhinoceros incursions in Oceania is thought to be related to the presence of low-virulence isolates of OrNV or virus-tolerant haplotypes of beetles. In this study, chronically infected beetles were collected from Philippines, Fiji, Papua New Guinea (PNG), and the Solomon Islands (SI). RNA sequencing (RNA-seq) was performed to investigate the global viral gene expression profiles and for comparative genomic analysis of structural variations. Maximum likelihood phylogenic analysis indicated that OrNV strains from the SI and Philippines are closely related, while OrNV strains from PNG and Fiji formed a distinct adjacent clade. We detected several polymorphic sites with a frequency higher than 35% in 892 positions of the viral genome. Nonsynonymous mutations were detected in several hypothetical proteins and 15 nudivirus core genes, such as gp034, lef-8, lef-4, and vp91 We found limited evidence of variation in viral gene expression among geographic populations. Only a few genes, such as gp01, gp022, and gp107, were differentially expressed among different strains. Additionally, small RNA sequencing from the SI population suggested that OrNV is targeted by the host RNA interference (RNAi) response with abundant 21-nucleotide small RNAs. Some of these genomic changes are specific to the geographic population and could be related to particular phenotypic characteristics of the strain, such as viral pathogenicity or transmissibility, and this requires further investigation.IMPORTANCE Oryctes rhinoceros nudivirus has been an effective biocontrol agent against the coconut rhinoceros beetle in Southeast Asia and the Pacific Islands for decades. The recent outbreak of these beetles in many South Pacific islands has had a significant impact on livelihoods in the region. It has been suggested that the resurgence and spread of the pest are related to the presence of low-virulence isolates of OrNV or virus-tolerant haplotypes of beetles. We examined viral genomic and transcriptional variations in chronically infected beetles from different geographical populations. A high number of polymorphic sites among several geographical strains of OrNV were identified, but potentially only a few of these variations in the genome are involved in functional changes and can potentially alter the typical function. These findings provide valuable resources for future studies to improve our understanding of the OrNV genetic variations in different geographic regions and their potential link to virus pathogenicity.

Impact of climate change on sustainable livestock production and existence of wildlife and marine species in the South Pacific island countries: a review

Climate change poses a significant threat to humanity by intensifying multiple hazards. South Pacific Island countries (SPICs) are affected and face a dire challenge to survival. Sea level rise is reducing the already limited land for human and animal habitation. Tropical cyclones and droughts are having devastating effects on the lives of humans and animals. Tropical cyclone Winston, for example, destroyed infrastructure for humans and animals in some parts of Fiji, and infectious diseases are spreading to regions where they are not commonly seen following cyclones and floods. Likewise, climate change is making droughts worse. Droughts are destroying crops and pasturelands and making freshwater unavailable for human and animal populations in the Solomon Islands and Tuvalu. There is an urgent need to ascertain the best approaches to tackle the events, which are already happening. Short-term changes can be managed at local levels through public awareness campaigns, understanding the weather patterns to prepare for disasters, reclaiming land, improving livestock breeds, introducing zoos and wildlife sanctuaries and inventing economically feasible technologies to harvest water. Long-term solutions depend on the implementation of international agreements, international aid and collective effort.

Metal(loid)s in superficial sediments from coral reefs of French Polynesia

French Polynesia exhibits a wide diversity of islands and coral-reef habitats, from urbanized high islands to remote atolls. Here, we present a geographically extensive baseline survey that examine the concentrations of nine metals (Ag, Cd, Co, Cu, Fe, Mn, Ni, Pb and Zn) and one metalloid (As) in superficial sediments from 28 sites spread over three islands of French Polynesia. We used Principal Component Analysis, Pearson's correlation, hierarchical cluster analysis and generalized linear mixed-effect models on Pollution Load Index to investigate site contamination and metal(loid) associations. At most sites, metal(loid) concentrations were below commonly applied sediment quality guidelines. However, a few sites located near farming activities, river discharges and urbanized areas showed concentrations above these guidelines. This study provides critical baseline values for metal(loid) contaminants in this region and in coral-reef areas in general, and spur decreased discharge of metal(loid) contaminants in the anthropogenised areas of French Polynesia.

Presence of microplastics in water, sediments and fish species in an urban coastal environment of Fiji, a Pacific small island developing state

Microplastics (MP) in the marine environment are widely reported. However, MP occurrence in some geographical areas such as from Small Island Developing States (SIDS) is missing. The main aim of this study was to assess MP levels in the urban coastal environment of Suva, the capital of the Republic of Fiji. Microplastics were measured from surface water, sediments and fish gastrointestinal tracts (GI) from three sites adjacent to Suva. In addition, an evaluation on the contribution from the local sewage treatment plant to MP levels was undertaken. In general, low levels of MP in water and sediments were detected, but significant differences were observed among sites. The sewage treatment plant was shown to contribute to MP levels in sediment but not in water. Species ingestion of MP was high and associated with MP in sediments. Fibres and fragments were the predominant type of MP, and fifteen different polymers were detected, with higher percentages of polyethylene, latex and polypropylene. In conclusion, MP were found in Suva coastal environment and these MP were associated to land based human activities.

Dengue virus type 3, South Pacific Islands, 2013

After an 18-year absence, dengue virus serotype 3 reemerged in the South Pacific Islands in 2013. Outbreaks in western (Solomon Islands) and eastern (French Polynesia) regions were caused by different genotypes. This finding suggested that immunity against dengue virus serotype, rather than virus genotype, was the principal determinant of reemergence.