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Jiang L, Guo T, Song X, Jiang H, Lu M, Luo J, Rossi V, He Y. MSH7 confers quantitative variation in pollen fertility and boosts grain yield in maize. Plant Biotechnol J 2024; 22:1372-1386. [PMID: 38263872 PMCID: PMC11022798 DOI: 10.1111/pbi.14272] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 11/15/2023] [Accepted: 12/08/2023] [Indexed: 01/25/2024]
Abstract
Fertile pollen is critical for the survival, fitness, and dispersal of flowering plants, and directly contributes to crop productivity. Extensive mutational screening studies have been carried out to dissect the genetic regulatory network determining pollen fertility, but we still lack fundamental knowledge about whether and how pollen fertility is controlled in natural populations. We used a genome-wide association study (GWAS) to show that ZmGEN1A and ZmMSH7, two DNA repair-related genes, confer natural variation in maize pollen fertility. Mutants defective in these genes exhibited abnormalities in meiotic or post-meiotic DNA repair, leading to reduced pollen fertility. More importantly, ZmMSH7 showed evidence of selection during maize domestication, and its disruption resulted in a substantial increase in grain yield for both inbred and hybrid. Overall, our study describes the first systematic examination of natural genetic effects on pollen fertility in plants, providing valuable genetic resources for optimizing male fertility. In addition, we find that ZmMSH7 represents a candidate for improvement of grain yield.
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Affiliation(s)
- Luguang Jiang
- National Maize Improvement Center of China, College of Agronomy and BiotechnologyChina Agricultural UniversityBeijingChina
| | - Ting Guo
- Institute of Genetics and Developmental Biology, Key Laboratory of Seed InnovationChinese Academy of SciencesBeijingChina
| | - Xinyuan Song
- Jilin Provincial Key Laboratory of Agricultural Biotechnology, Agro‐Biotechnology Research InstituteJilin Academy of Agricultural SciencesChangchunChina
| | - Huan Jiang
- National Maize Improvement Center of China, College of Agronomy and BiotechnologyChina Agricultural UniversityBeijingChina
| | - Minhui Lu
- Center for Crop Functional Genomics and Molecular BreedingChina Agricultural UniversityBeijingChina
| | - Jinhong Luo
- National Maize Improvement Center of China, College of Agronomy and BiotechnologyChina Agricultural UniversityBeijingChina
- Institute of Genetics and Developmental Biology, Key Laboratory of Seed InnovationChinese Academy of SciencesBeijingChina
| | - Vincenzo Rossi
- Council for Agricultural Research and EconomicsResearch Centre for Cereal and Industrial CropsBergamoItaly
| | - Yan He
- National Maize Improvement Center of China, College of Agronomy and BiotechnologyChina Agricultural UniversityBeijingChina
- Institute of Genetics and Developmental Biology, Key Laboratory of Seed InnovationChinese Academy of SciencesBeijingChina
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Gajdošová Z, Svitok M, Cetlová V, Mártonfiová L, Kučera J, Kolarčik V, Hurdu BI, Sîrbu IM, Turisová I, Turis P, Slovák M. Incidence and evolutionary relevance of autotriploid cytotypes in a relict member of the genus Daphne (Thymelaeaceae). AoB Plants 2023; 15:plad056. [PMID: 37899980 PMCID: PMC10601019 DOI: 10.1093/aobpla/plad056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Accepted: 08/09/2023] [Indexed: 10/31/2023]
Abstract
Odd ploidy-level cytotypes in sexually reproducing species are considered a dead end due to absent or reduced fertility. If sterility is only partial, however, their contribution to the population gene pool can be augmented by longevity and clonal growth. To test this, we investigated the cytotype origin and spatial pattern, and pollen viability in three relict shrub species of the genus Daphne (Thymelaeaceae Juss.) in central Europe. Daphne cneorum subsp. cneorum is a widespread European species that has a broad ecological amplitude, whereas D. cneorum subsp. arbusculoides and D. arbuscula are narrow endemics of the western Pannonian Plain and the Western Carpathians, respectively. Our study confirmed that all three taxa are diploid. However, of more than a thousand analysed individuals of D. cneorum subsp. cneorum, five in four different populations were triploid. Our data indicate that these triploids most likely originate from recurrent autopolyploidization events caused by the fusion of reduced and unreduced gametes. High pollen viability was observed in all three taxa and in both diploid and triploid cytotypes, ranging from 65 to 100 %. Our study highlights the significant role of odd ploidy-level cytotypes in interploidy gene flow, calling for more research into their reproduction, genetic variability, and overall fitness. Interestingly, while the endemic D. arbuscula differs from D. cneorum based on genetic and genome size data, D. cneorum subsp. arbusculoides was indistinguishable from D. cneorum subsp. cneorum. However, our study reveals that the subspecies differ in the number of flowers per inflorescence. This is the first comprehensive cytogeographic study of this intriguing genus at a regional scale, and in spite of its karyological stability, it contributes to our understanding of genomic evolution in plant species with a wide ecological amplitude.
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Affiliation(s)
- Zuzana Gajdošová
- Department of Evolution and Systematics, Institute of Botany, Plant Sciences and Biodiversity Centre, Slovak Academy of Sciences, Dúbravská cesta 9, SK-845 23 Bratislava, Slovak Republic
| | - Marek Svitok
- Department of Biology and General Ecology, Faculty of Ecology and Environmental Sciences, Technical University in Zvolen, Ul. T. G. Masaryka 24, SK-960 01 Zvolen, Slovak Republic
- Department of Forest Ecology, Czech University of Life Sciences Prague, CZ-16 521 Suchdol, Praha 6, Czech Republic
| | - Veronika Cetlová
- Department of Evolution and Systematics, Institute of Botany, Plant Sciences and Biodiversity Centre, Slovak Academy of Sciences, Dúbravská cesta 9, SK-845 23 Bratislava, Slovak Republic
| | - Lenka Mártonfiová
- Botanical Garden of Pavol Jozef Šafárik University in Košice, Mánesova 23, SK-043 52 Košice, Slovak Republic
| | - Jaromír Kučera
- Department of Evolution and Systematics, Institute of Botany, Plant Sciences and Biodiversity Centre, Slovak Academy of Sciences, Dúbravská cesta 9, SK-845 23 Bratislava, Slovak Republic
| | - Vladislav Kolarčik
- Institute of Biology and Ecology, Faculty of Science, Pavol Jozef Šafárik University in Košice, Mánesova 23, SK-041 54 Košice, Slovak Republic
| | - Bogdan-Iuliu Hurdu
- Department of Taxonomy and Evolution, Institute of Biological Research, 48 Republicii St., R-400015 Cluj-Napoca, Romania
| | - Ioana-Minodora Sîrbu
- Faculty of Biology, University of Bucharest, Splaiul Independenței 91–95, R-050095Bucharest, Romania
| | - Ingrid Turisová
- Department of Biology and Ecology, Faculty of Natural Sciences, Matej Bel University in Banská Bystrica, Tajovského 40, SK-974 01 Banská Bystrica, Slovak Republic
| | - Peter Turis
- Department of Biology and Ecology, Faculty of Natural Sciences, Matej Bel University in Banská Bystrica, Tajovského 40, SK-974 01 Banská Bystrica, Slovak Republic
| | - Marek Slovák
- Department of Evolution and Systematics, Institute of Botany, Plant Sciences and Biodiversity Centre, Slovak Academy of Sciences, Dúbravská cesta 9, SK-845 23 Bratislava, Slovak Republic
- Department of Botany, Faculty of Science, Charles University, Benátská 2, CZ-128 01 Praha, Czech Republic
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Zhang C, Zhang C, Xu X, Liao M, Tong N, Zhang Z, Chen Y, Xu Han X, Lin Y, Lai Z. Transcriptome analysis provides insight into the regulatory mechanisms underlying pollen germination recovery at normal high ambient temperature in wild banana ( Musa itinerans). Front Plant Sci 2023; 14:1255418. [PMID: 37822335 PMCID: PMC10562711 DOI: 10.3389/fpls.2023.1255418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/08/2023] [Accepted: 09/11/2023] [Indexed: 10/13/2023]
Abstract
Introduction Cultivated banana are polyploid, with low pollen fertility, and most cultivars are male sterile, which leads to difficulties in banana breeding research. The selection of male parent with excellent resistance and pollen fertility is therefore essential for banana breeding. Wild banana (Musa itinerans) have developed many good characteristics during natural selection and constitute an excellent gene pool for breeding. Therefore, research on wild banana breeding is very important for banana breeding. Results In the current analysis, we examined the changes in viability of wild banana pollens at different temperatures by in vitro germination, and found that the germination ability of wild banana pollens cultured at 28°C for 2 days was higher than that of pollens cultured at 23°C (pollens that could not germinate normally under low temperature stress), 24°C (cultured at a constant temperature for 2 days) and 32°C (cultured at a constant temperature for 2 days). To elucidate the molecular mechanisms underlying the germination restoration process in wild banana pollens, we selected the wild banana pollens that had lost its germination ability under low temperature stress (23°C) as the control group (CK) and the wild banana pollens that had recovered its germination ability under constant temperature incubation of 28°C for 2 days as the treatment group (T) for transcriptome sequencing. A total of 921 differentially expressed genes (DEGs) were detected in CK vs T, of which 265 were up-regulated and 656 were down-regulated. The combined analysis of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) revealed that the activation, metabolism of various substances (lipids, sugars, amino acids) play a major role in restoring pollen germination capacity. TCA cycle and the sesquiterpenoid and triterpenoid biosynthetic pathways were also significantly enriched in the KEGG pathway. And we found that some DEGs may be associated with pollen wall formation, DNA methylation and DNA repair. The cysteine content, free fatty acid (FFA) content, H2O2 content, fructose content, and sucrose content of pollen were increased at treatment of 28°C, while D-Golactose content was decreased. Finally, the GO pathway was enriched for a total of 24 DEGs related to pollen germination, of which 16 DEGs received targeted regulation by 14 MYBs. Discussions Our study suggests that the balance between various metabolic processes, pollen wall remodelling, DNA methylation, DNA repairs and regulation of MYBs are essential for germination of wild banana pollens.
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Affiliation(s)
- Chunyu Zhang
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Chengyu Zhang
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Xiaoqiong Xu
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Minzhang Liao
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Ning Tong
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Zihao Zhang
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Yukun Chen
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Xu Xu Han
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China
- Institut de la Recherche Interdisciplinaire de Toulouse, IRIT-ARI, Toulouse, France
| | - Yuling Lin
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Zhongxiong Lai
- Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China
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Li Q, Zhang C, Wen J, Chen L, Shi Y, Yang Q, Li D. Transcriptome Analyses Show Changes in Gene Expression Triggered by a 31-bp InDel within OsSUT3 5'UTR in Rice Panicle. Int J Mol Sci 2023; 24:10640. [PMID: 37445819 DOI: 10.3390/ijms241310640] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Revised: 06/18/2023] [Accepted: 06/21/2023] [Indexed: 07/15/2023] Open
Abstract
Pollen development and its fertility are obligatory conditions for the reproductive success of flowing plants. Sucrose transporter 3 (OsSUT3) is known to be preferentially expressed and may play critical role in developing pollen. A 31-bp InDel was identified as a unique variation and was shown to be responsible for the expression of downstream gene in our previous study. In this study, to analyze the changes of gene expression triggered by 31-bp InDel during pollen development, two vectors (p385-In/Del::OsSUT3-GUS) were constructed and then stably introduced into rice. Histochemical and quantitative real-time PCR (qRT-PCR) analysis of transgenic plants showed that 31-bp deletion drastically reduced the expressions of downstream genes, including both OsSUT3 and GUS in rice panicle at booting stage, especially that of OsSUT3. The transcriptome profile of two types of panicles at booting stage revealed a total of 1028 differentially expressed genes (DEGs) between 31-bp In and 31-bp Del transgenic plants. Further analyses showed that 397 of these genes were significantly enriched for the 'metabolic process' and 'binding'. Among them, nineteen genes had a strong relationship with starch and sucrose metabolism and were identified as candidate genes potentially associated with the starch accumulation in rice pollen, which that was also verified via qRT-PCR. In summary, 31-bp InDel plays a crucial role not only in the regulation of downstream genes but in the expression of sucrose-starch metabolizing genes in multiple biological pathways, and provides a different regulation mechanism for sucrose metabolism in pollen.
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Affiliation(s)
- Qiuping Li
- Rice Research Institute, Yunnan Agricultural University, Kunming 650201, China
| | - Chunlong Zhang
- Rice Research Institute, Yunnan Agricultural University, Kunming 650201, China
| | - Jiancheng Wen
- Rice Research Institute, Yunnan Agricultural University, Kunming 650201, China
| | - Lijuan Chen
- Rice Research Institute, Yunnan Agricultural University, Kunming 650201, China
| | - Yitong Shi
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China
| | - Qinghui Yang
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China
| | - Dandan Li
- Rice Research Institute, Yunnan Agricultural University, Kunming 650201, China
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Tian Z, Ji C, Xie Z, Shi X, Tian B, Cao G, Wei X, Yang Y, Wei F, Shi G. Integrated cytological and transcriptomic analysis reveals insights into pollen fertility in newly synthetic Brassica allohexaploids. Front Plant Sci 2023; 13:1096804. [PMID: 36714744 PMCID: PMC9880477 DOI: 10.3389/fpls.2022.1096804] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/12/2022] [Accepted: 12/21/2022] [Indexed: 06/18/2023]
Abstract
Trigenomic Brassica allohexaploids (AABBCC, 2n = 6x = 54) have great potential in oilseed breeding and genetic diversity. However, Brassica allohexaploids do not exist naturally, and the underlying mechanism regulating pollen fertility in artificially synthesized Brassica allohexaploids is still unclear. In this study, synthetic Brassica allohexaploids were produced by crossing allotetraploid B. carinata (BBCC, 2n = 4x = 34) and diploid B. rapa (AA, 2n = 2x = 20), followed by chromosome doubling. The results showed that the pollen fertility was significantly reduced and the pollen structures were mostly distorted, but the nursing anther tapetum developed normally in the synthetic Brassica allohexaploids. Furthermore, the data showed that the meiotic events occurred irregularly with uneven chromosome segregation and microspore development appeared mostly abnormal. Transcription analysis showed that the upregulation of genes related to the negative regulation of flower development and the downregulation of genes related to chromosome segregation might play an essential role in reduction of pollen fertility in the Brassica allohexaploids. In conclusion, this study elucidated the related mechanisms affecting pollen fertility during male gametophytic development at the cytological and transcriptomic levels in the newly synthesized Brassica allohexaploids.
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Affiliation(s)
- Zhaoran Tian
- Henan International Joint Laboratory of Crop Gene Resources and Improvements, School of Agricultural Sciences, Zhengzhou University, Zhengzhou, China
| | - Chengyan Ji
- Henan International Joint Laboratory of Crop Gene Resources and Improvements, School of Agricultural Sciences, Zhengzhou University, Zhengzhou, China
- Institute of Horticulture, Henan Academy of Agricultural Sciences, Graduate T&R Base of Zhengzhou University, Zhengzhou, China
| | - Zhengqing Xie
- Henan International Joint Laboratory of Crop Gene Resources and Improvements, School of Agricultural Sciences, Zhengzhou University, Zhengzhou, China
| | - Xinjie Shi
- Henan International Joint Laboratory of Crop Gene Resources and Improvements, School of Agricultural Sciences, Zhengzhou University, Zhengzhou, China
- Institute of Horticulture, Henan Academy of Agricultural Sciences, Graduate T&R Base of Zhengzhou University, Zhengzhou, China
| | - Baoming Tian
- Henan International Joint Laboratory of Crop Gene Resources and Improvements, School of Agricultural Sciences, Zhengzhou University, Zhengzhou, China
| | - Gangqiang Cao
- Henan International Joint Laboratory of Crop Gene Resources and Improvements, School of Agricultural Sciences, Zhengzhou University, Zhengzhou, China
| | - Xiaochun Wei
- Institute of Horticulture, Henan Academy of Agricultural Sciences, Graduate T&R Base of Zhengzhou University, Zhengzhou, China
| | - Yan Yang
- Henan International Joint Laboratory of Crop Gene Resources and Improvements, School of Agricultural Sciences, Zhengzhou University, Zhengzhou, China
| | - Fang Wei
- Henan International Joint Laboratory of Crop Gene Resources and Improvements, School of Agricultural Sciences, Zhengzhou University, Zhengzhou, China
| | - Gongyao Shi
- Henan International Joint Laboratory of Crop Gene Resources and Improvements, School of Agricultural Sciences, Zhengzhou University, Zhengzhou, China
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Chen L, Liang Z, Xie S, Liu W, Wang M, Yan J, Yang S, Jiang B, Peng Q, Lin Y. Responses of differential metabolites and pathways to high temperature in cucumber anther. Front Plant Sci 2023; 14:1131735. [PMID: 37123826 PMCID: PMC10140443 DOI: 10.3389/fpls.2023.1131735] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/26/2022] [Accepted: 03/24/2023] [Indexed: 05/03/2023]
Abstract
Cucumber is one of the most important vegetable crops, which is widely planted all over the world. Cucumber always suffers from high-temperature stress in South China in summer. In this study, liquid chromatography-mass spectrometry (LC-MS) analysis was used to study the differential metabolites of cucumber anther between high-temperature (HT) stress and normal condition (CK). After HT, the pollen fertility was significantly reduced, and abnormal anther structures were observed by the paraffin section. In addition, the metabolomics analysis results showed that a total of 125 differential metabolites were identified after HT, consisting of 99 significantly upregulated and 26 significantly downregulated metabolites. Among these differential metabolites, a total of 26 related metabolic pathways were found, and four pathways showed significant differences, namely, porphyrin and chlorophyll metabolism; plant hormone signal transduction; amino sugar and nucleotide sugar metabolism; and glycine, serine, and threonine metabolism. In addition, pollen fertility was decreased by altering the metabolites of plant hormone signal transduction and amino acid and sugar metabolism pathway under HT. These results provide a comprehensive understanding of the metabolic changes in cucumber anther under HT.
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Affiliation(s)
- Lin Chen
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Zhaojun Liang
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Shuyan Xie
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Wenrui Liu
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Min Wang
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Jinqiang Yan
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Songguang Yang
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Biao Jiang
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Qingwu Peng
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Yu’e Lin
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
- *Correspondence: Yu’e Lin,
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Zhang X, Zhang M, Guo L, Qi T, Tang H, Li Y, Zuo Z, Shahzad K, Feng J, Zang R, Wang H, Qiao X, Wu J, Xing C. Integrated analysis of metabolome and transcriptome reveals the cytoplasmic effects of CMS-D2 on pollen fertility resulting from disrupted lipid metabolism. Front Plant Sci 2022; 13:998203. [PMID: 36247574 PMCID: PMC9562729 DOI: 10.3389/fpls.2022.998203] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Accepted: 08/31/2022] [Indexed: 06/16/2023]
Abstract
Using cytoplasmic male sterility of Gossypium harknesii (CMS-D2) is an economical and effective method to produce cotton hybrids. However, the detrimental cytoplasmic effects of CMS-D2 on pollen fertility and fiber yields greatly limit the further development of three-line hybrid cotton in China. In this study, an integrated non-targeted metabolomics and transcriptome analysis was performed on mature pollens of maintainer line NB, isonuclear alloplasmic near-isogenic restorer lines NH and SH under two environments. A total of 820 metabolites were obtained, of which lipids and lipid-like molecules were the most, followed by organic acids derivatives, phenylpropanoids, and polyketides. Transcriptome analysis revealed significantly more differentially expressed genes (DEGs) in SH versus NH both in Anyang and Jiujiang, and most of the DEGs were significantly upregulated. Further KEGG analysis showed that most DEGs were enriched in the biosynthesis of unsaturated fatty acids, phenylalanine metabolism, and phagosome. Based on the weighted gene co-expression network analysis, totally 74 hub genes were also identified, of which three transcription factors, i.e., WRKY22, WRKY53, and ARF18 were significantly upregulated in SH and may play a negative regulatory role in pollen development by directly or indirectly regulating the jasmonic acid synthesis and signal transduction. Moreover, we found that the negative effects of CMS-D2 cytoplasm on pollen fertility were mainly due to disturbed lipid metabolism, especially the metabolic balance of unsaturated fatty acids, ultimately resulting in the decline of pollen fertility. Meanwhile, in the presence of CMS-D2 sterile cytoplasm, the cytoplasmic-nucleus interaction effects generated a substantial quantity of flavonoids involved in the fertility restoration process. This study preliminarily clarified some of the reasons for the negative effects of CMS-D2 cytoplasm on pollen fertility, and our results will provide an important theoretical reference for further breeding and improvement of three-line hybrid cotton in the future.
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Hang D, Yan L, Shunchun L, Lei L, Juanyan W, Zhijie Z, Qichun P, Nan L, Xiangqian Z. Effect of extensin-like OsPEX1 on pollen fertility in rice. Yi Chuan 2021; 43:271-279. [PMID: 33724211 DOI: 10.16288/j.yczz.20-296] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
Abstract
LRXs (leucine-rich repeat extensins) are chimeric cell wall proteins containing an N-terminal leucine-rich repeat (LRR) and a C-terminal extensin domain. Increasing evidences suggest that LRXs family genes play important roles in pollen germination and pollen tube growth in Arabidopsis thaliana. However, the functions of rice (Oryza sativa L.) LRX genes in pollen development remain poorly understood. Bioinformatics analysis showed that the rice LRX gene family consist of eight members, namely OsPEX3, OsLRX3 and OsLRX5 located on chromosome 1, OsLRX1, OsLRX3, OsLRX2,OsPEX1 and OsPEX2 located on chromosome 2, 5, 6, 11 and 12, respectively. The OsPEX1 gene is preferentially expressed in rice anther, suggesting that it may be involved in the regulation of pollen development. Next, we further investigated the role of the OsPEX1 gene in rice by knockdown of its expression using an RNAi approach. The OsPEX1 RNAi transgenic lines showed a significant decrease in seed setting rate (10%~30%) due to pollen sterility. Further quantitative RT-PCR analysis indicated that the OsPEX1 gene was significantly down-regulated in the RNAi transgenic lines. The results indicate that the OsPEX1plays an important role in the regulation of rice pollen development. Further studies on this gene could provide insights on the molecular and genetic mechanisms in this developmental process.
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Affiliation(s)
- Dai Hang
- College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China
| | - Li Yan
- College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China
| | - Liu Shunchun
- College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China
| | - Lin Lei
- College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China
| | - Wu Juanyan
- College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China
| | - Zhang Zhijie
- College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China
| | - Peng Qichun
- College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China
| | - Li Nan
- College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China
| | - Zhang Xiangqian
- College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China
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Huang Z, Shen F, Chen Y, Cao K, Wang L. Preliminary Identification of Key Genes Controlling Peach Pollen Fertility Using Genome-Wide Association Study. Plants (Basel) 2021; 10:242. [PMID: 33513678 DOI: 10.3390/plants10020242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/06/2021] [Revised: 01/25/2021] [Accepted: 01/25/2021] [Indexed: 11/17/2022]
Abstract
Previous genetic mapping helped detect a ~7.52 Mb putative genomic region for the pollen fertility trait on peach Chromosome 06 (Chr.06), which was too long for candidate gene characterization. In this study, using the whole-genome re-sequencing data of 201 peach accessions, we performed a genome-wide association study to identify key genes related to peach pollen fertility trait. The significant association peak was detected at Chr.06: 2,116,368 bp, which was in accordance with the previous genetic mapping results, but displayed largely improved precision, allowing for the identification of nine candidate genes. Among these candidates, gene PpABCG26, encoding an ATP-binding cassette G (ABCG) transporter and harboring the most significantly associated SNP (Single Nucleotide Polymorphism) marker in its coding region, was hypothesized to control peach pollen fertility/sterility based on the results of gene function comparison, gene relative expression, and nucleotide sequence analysis. The obtained results will help us to understand the genetic basis of peach pollen fertility trait, and to discover applicable markers for pre-selection in peach.
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Chen L, Yun M, Cao Z, Liang Z, Liu W, Wang M, Yan J, Yang S, He X, Jiang B, Peng Q, Lin Y. Phenotypic Characteristics and Transcriptome of Cucumber Male Flower Development Under Heat Stress. Front Plant Sci 2021; 12:758976. [PMID: 34745192 PMCID: PMC8570340 DOI: 10.3389/fpls.2021.758976] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2021] [Accepted: 09/13/2021] [Indexed: 05/16/2023]
Abstract
Cucumber (Cucumis sativus L.) is an important vegetable crop, which is thermophilic not heat resistant. High-temperature stress always results in sterility at reproductive stage. In the present study, we evaluate the male flower developmental changes under normal (CK) and heat stress (HS) condition. After HS, the activities of peroxidase (POD) and superoxide dismutase (SOD) and the contents of malondialdehyde (MDA) were increased. In addition, the pollen fertility was significantly decreased; and abnormal tapetum and microspore were observed by paraffin section. Transcriptome analysis results presented that total of 5828 differentially expressed genes (DEGs) were identified after HS. Among these DEGs, 20 DEGs were found at four stages, including DNA binding transcription factor, glycosyltransferase, and wound-responsive family protein. The gene ontology term of carbohydrate metabolic process was significantly enriched in all anther stages, and many saccharides and starch synthase-related genes, such as invertase, sucrose synthase, and starch branching enzyme, were significantly different expressed in HS compared with CK. Furthermore, co-expression network analysis showed a module (midnightblue) strongly consistent with HS, and two hub genes (CsaV3_6G004180 and CsaV3_5G034860) were found with a high degree of connectivity to other genes. Our results provide comprehensive understandings on male flower development in cucumber under HS.
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Affiliation(s)
- Lin Chen
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Maomao Yun
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Zhenqiang Cao
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Zhaojun Liang
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Wenrui Liu
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Min Wang
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Jinqiang Yan
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Songguang Yang
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Xiaoming He
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Biao Jiang
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Qingwu Peng
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
| | - Yu’e Lin
- Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
- Guangdong Key Laboratory for New Technology Research of Vegetables, Guangzhou, China
- *Correspondence: Yu’e Lin,
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11
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Younis S, Shaheen S, Harun N, Abbas M, Ahmad M, Hussain K, Khan F. Application of multimicroscopic techniques (LM and SEM) in comparative palynological study of Asteroideae members, inhabited in Pakistan. Microsc Res Tech 2020; 84:1063-1077. [PMID: 33332675 DOI: 10.1002/jemt.23667] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Revised: 10/15/2020] [Accepted: 11/04/2020] [Indexed: 11/09/2022]
Abstract
In the present study light and scanning electron microscopic approaches were used to study the palynological variations among 30 Asteroideae members. Variety of qualitative and quantitative palynological characters like pollen shape and type, pollen sculpturing, pollen size, P/E ratio, exine and intine thickness, interspecific difference, colpi size, pore size, spines length, spine width, and pollen fertility were observed. Results reported remarkable variations among pollen characters of studied taxa. The shape of pollen grains in polar and equatorial views varied from specie to specie such as spheroidal, prolate, oblate, subspheroidal, oblate spheroidal, prolate spheroidal, suboblate, and sub prolate. Bidens pilosa L. showed maximum pollen size in both polar and equatorial views, whereas minimum pollen size in polar view was found in Tetraneuris scaposa (DC.) Greene. (i.e., 30.5 μm) and in equatorial view was found in Cosmos sulphureus Cav. (25.5 μm).The highest P/E ratio (1.39 μm) was measured in Glebionis coronaria L. The values of exine and intine thickness also varied. Tricolporate, tetracolporate, trizonocolporate, pentoporate, and polypentoporate pollen types were examined. Spinateand echinate pollen sculpturingobserved under SEM. Variations in spine length and width also recorded. The maximum pollen fertility (98%) was measured in Chrysanthemum morifolium Ramat. and the lowest (56%) was recorded in Thymophylla tenuiloba (DC.) Small. It was concluded that the variations in qualitative and quantitative characters were seemed to be valuable for the taxonomic investigations of Asteroideae taxa.
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Affiliation(s)
- Sidra Younis
- Department of Botany, Lahore College for Women University, Lahore, Pakistan
| | - Shabnum Shaheen
- Department of Botany, Lahore College for Women University, Lahore, Pakistan
| | - Nidaa Harun
- Department of Botany, Lahore College for Women University, Lahore, Pakistan.,Department of Botany, Faculty of Life Sciences, University of Okara, Pakistan
| | - Moneeza Abbas
- Department of Environmental Science, Lahore College for Women University, Lahore, Pakistan
| | - Mushtaq Ahmad
- Department of Plant Sciences, Quaid-i-Azam University, Islamabad, Pakistan
| | - Khadim Hussain
- Department of Bioinformatics & Biotechnology, Government College University, Faisalabad, Pakistan
| | - Farah Khan
- Department of Botany, Lahore College for Women University, Lahore, Pakistan
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12
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Baranova EN, Chaban IA, Kurenina LV, Konovalova LN, Varlamova NV, Khaliluev MR, Gulevich AA. Possible Role of Crystal-Bearing Cells in Tomato Fertility and Formation of Seedless Fruits. Int J Mol Sci 2020; 21:E9480. [PMID: 33322169 PMCID: PMC7763322 DOI: 10.3390/ijms21249480] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2020] [Revised: 12/07/2020] [Accepted: 12/11/2020] [Indexed: 11/23/2022] Open
Abstract
Crystal-bearing cells or idioblasts, which deposit calcium oxalate, are located in various tissues and organs of many plant species. The functional significance of their formation is currently unclear. Idioblasts in the leaf parenchyma and the development of crystal-bearing cells in the anther tissues of transgenic tomato plants (Solanum lycopersicon L.), expressing the heterologous FeSOD gene and which showed a decrease in fertility, were studied by transmission and scanning electron microscopy. The amount of calcium oxalate crystals was found to increase significantly in the transgenic plants compared to the wild type (WT) ones in idioblasts and crystal-bearing cells of the upper part of the anther. At the same time, changes in the size and shape of the crystals and their location in anther organs were noted. It seems that the interruption in the break of the anther stomium in transgenic plants was associated with the formation and cell death regulation of a specialized group of crystal-bearing cells. This disturbance caused an increase in the pool of these cells and their localization in the upper part of the anther, where rupture is initiated. Perturbations were also noted in the lower part of the anther in transgenic plants, where the amount of calcium oxalate crystals in crystal-bearing cells was reduced that was accompanied by disturbances in the morphology of pollen grains. Thus, the induction of the formation of crystal-bearing cells and calcium oxalate crystals can have multidirectional effects, contributing to the regulation of oxalate metabolism in the generative and vegetative organs and preventing fertility when the ROS balance changes, in particular, during oxidative stresses accompanying most abiotic and biotic environmental factors.
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Affiliation(s)
- Ekaterina N. Baranova
- Plant Protection Laboratory, N.V. Tsitsin Main Botanical Garden of Russian Academy of Sciences, 127276 Moscow, Russia;
- Cell Biology Laboratory, All-Russian Scientific Research Institute of Agricultural Biotechnology, 127550 Moscow, Russia;
| | - Inna A. Chaban
- Cell Biology Laboratory, All-Russian Scientific Research Institute of Agricultural Biotechnology, 127550 Moscow, Russia;
| | - Ludmila V. Kurenina
- Plant Cell Engineering Laboratory, All-Russian Scientific Research Institute of Agricultural Biotechnology, 127550 Moscow, Russia; (L.V.K.); (N.V.V.); (M.R.K.)
| | - Ludmila N. Konovalova
- Plant Protection Laboratory, N.V. Tsitsin Main Botanical Garden of Russian Academy of Sciences, 127276 Moscow, Russia;
- Cell Biology Laboratory, All-Russian Scientific Research Institute of Agricultural Biotechnology, 127550 Moscow, Russia;
| | - Natalia V. Varlamova
- Plant Cell Engineering Laboratory, All-Russian Scientific Research Institute of Agricultural Biotechnology, 127550 Moscow, Russia; (L.V.K.); (N.V.V.); (M.R.K.)
| | - Marat R. Khaliluev
- Plant Cell Engineering Laboratory, All-Russian Scientific Research Institute of Agricultural Biotechnology, 127550 Moscow, Russia; (L.V.K.); (N.V.V.); (M.R.K.)
- Agronomy and Biotechnology Faculty, Moscow Timiryazev Agricultural Academy, Russian State Agrarian University, Timiryazevskaya 49, 127550 Moscow, Russia
| | - Alexander A. Gulevich
- Plant Cell Engineering Laboratory, All-Russian Scientific Research Institute of Agricultural Biotechnology, 127550 Moscow, Russia; (L.V.K.); (N.V.V.); (M.R.K.)
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Wu J, Chen Y, Lin H, Chen Y, Yu H, Lu Z, Li X, Zhou H, Chen Z, Liu X. Comparative Cytological and Transcriptome Analysis Revealed the Normal Pollen Development Process and Up-Regulation of Fertility-Related Genes in Newly Developed Tetraploid Rice. Int J Mol Sci 2020; 21:E7046. [PMID: 32987934 DOI: 10.3390/ijms21197046] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2020] [Revised: 09/21/2020] [Accepted: 09/22/2020] [Indexed: 01/23/2023] Open
Abstract
Autotetraploid rice is a useful germplasm for polyploid rice breeding; however, low seed setting is a major hindrance for its utilization. Here, we reported the development of a new tetraploid rice, Huoduo1 (H1), which has the characteristic of high fertility, from crossing generations of autotetraploid rice. Cytological observations displayed the high fertility of the pollen (95.62%) in H1, a lower percentage of pollen mother cell (PMC) abnormalities, and stable chromosome configurations during the pollen development process compared with its parents. Using RNA-seq analysis, we detected 440 differentially expressed genes (DEGs) in H1 compared with its parents. Of these DEGs, 193 were annotated as pollen fertility-related genes, and 129 (~66.8%) exhibited significant up-regulation in H1 compared with the parents, including three environmentally sensitive genic male sterility genes (TMS9-1, TMS5, and CSA), one meiosis gene (RAD51D), and three tapetal-related genes (MIL2, OsAP25, and OsAP37), which were validated by qRT-PCR in this study. Two genes, TMS9-1 and TMS5, were knocked out using CRISPR/Cas9 technology, and their mutants displayed low fertility and the abnormal development of pollen. Our findings provide evidence for the regulatory mechanisms of fertility in tetraploid rice and indicated that the up-regulation of pollen fertility-related genes may contribute to the high fertility in new tetraploid rice.
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14
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Milner MJ, Craze M, Bowden S, Bates R, Wallington EJ, Keeling A. Identification of genes involved in male sterility in wheat ( Triticum aestivum L.) which could be used in a genic hybrid breeding system. Plant Direct 2020; 4:e00201. [PMID: 32181421 PMCID: PMC7063588 DOI: 10.1002/pld3.201] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2019] [Revised: 12/20/2019] [Accepted: 01/13/2020] [Indexed: 05/12/2023]
Abstract
Wheat is grown on more land than any other crop in the world. Current estimates suggest that yields will have to increase sixty percent by 2050 to meet the demand of an ever-increasing human population; however, recent wheat yield gains have lagged behind other major crops such as rice and maize. One of the reasons suggested for the lag in yield potential is the lack of a robust hybrid system to harness the potential yield gains associated with heterosis, also known as hybrid vigor. Here, we set out to identify candidate genes for a genic hybrid system in wheat and characterize their function in wheat using RNASeq on stamens and carpels undergoing meiosis. Twelve genes were identified as potentially playing a role in pollen viability. CalS5- and RPG1-like genes were identified as pre- and post-meiotic genes for further characterization and to determine their role in pollen viability. It appears that all three homoeologues of both CalS5 and RPG1 are functional in wheat as all three homoeologues need to be knocked out in order to cause male sterility. However, one functional homoeologue is sufficient to maintain male fertility in wheat.
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Affiliation(s)
| | | | | | - Ruth Bates
- The John Bingham LaboratoryNIABCambridgeUK
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15
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Qureshi MN, Talha N, Ahmad M, Zafar M, Ashfaq S. Morpho-palynological investigations of natural resources: A case study of Surghar mountain district Mianwali Punjab, Pakistan. Microsc Res Tech 2019; 82:1047-1056. [PMID: 30937989 DOI: 10.1002/jemt.23252] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2018] [Revised: 02/14/2019] [Accepted: 02/26/2019] [Indexed: 11/06/2022]
Abstract
Surghar mountain belt has comparatively less natural resources of floral diversity because it is composed of minerals of different kinds making it less favorable for the growth of different vegetation. The pollen morphology of some selected plants from Surghar belt Mainwali has been evaluated. The pollen grains were measured and demonstrated using scanning electron microscopy (SEM). The examined plant specimens have a difference in size, shape, polarity, and their exine ornamentation. The pollen taxa show a huge variation in size and sculpture. Pollen fertility has also been estimated, shows that the selected plants are well-known in the Surghar belt. The need of the hour is to conserve these plants having a higher fertility rate to cope with the deforestation in an area. The conclusion does not favor theories in which deforestation results in fast growth in population. It shows that the irrational management and unlawful cutting down of woods neglected by the forest department are the main causes of deforestation in the mountain belt of Mianwali. The findings show the importance of morphological characteristics in the identification of natural resource species in the area.
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Affiliation(s)
- Muhammad Naeem Qureshi
- National Institute of Pakistan Studies (NIPS), Quaid-i-Azam University, Islamabad, Pakistan
| | - Naureen Talha
- National Institute of Pakistan Studies (NIPS), Quaid-i-Azam University, Islamabad, Pakistan
| | - Mushtaq Ahmad
- Department of Plant Sciences, Quaid-i-Azam University, Islamabad, Pakistan
| | - Muhammad Zafar
- Department of Plant Sciences, Quaid-i-Azam University, Islamabad, Pakistan
| | - Shomaila Ashfaq
- Department of Plant Sciences, Quaid-i-Azam University, Islamabad, Pakistan
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16
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Hoshino Y, Kanematsu N, Mii M. Evaluation of female gamete fertility through histological observation by the clearing procedure in Lilium cultivars. Breed Sci 2018; 68:360-366. [PMID: 30100803 PMCID: PMC6081296 DOI: 10.1270/jsbbs.17153] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2017] [Accepted: 03/28/2018] [Indexed: 05/24/2023]
Abstract
Lilies (Lilium spp.) are one of the most important floricultural crops. As most lily cultivars have originated from interspecific hybridization, they usually have complex genome composition and occasionally fail to develop normal gametes. Further improvement of lily cultivars by sexual crossing requires evaluation of gamete development and subsequent male and female fertility. Although male fertility is easily evaluated through microscopic observation after staining or by pollen culture for germination, evaluation of female fertility is difficult, because gametes develop inside an ovule within an ovary. Lilium species have the Fritillaria type of embryo sac, which, at maturity, consists of a haploid egg apparatus, including one haploid egg cell and two haploid synergids, two polar nuclei (one haploid nucleus and one triploid nucleus) and three triploid antipodal cells. Compared to the Polygonum type of embryo sac, composition of the embryo in the Fritillaria type of embryo sac is complex. We developed an efficient microscopic observation technique for ovules using the clearing procedure, which allowed us to categorize abnormal patterns of female gametes and to elucidate the frequency of abnormal female gamete development. The relationship among normal embryo sac, pollen stainability and seed formation in lily cultivars is discussed.
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Affiliation(s)
- Yoichiro Hoshino
- Field Science Center for Northern Biosphere, Hokkaido University,
Kita 11, Nishi 10, Kita-Ku, Sapporo, Hokkaido 060-0811,
Japan
| | - Noriko Kanematsu
- Laboratory of Plant Cell Technology, Faculty of Horticulture, Chiba University,
Matsudo 648, Chiba 278-8510,
Japan
| | - Masahiro Mii
- Laboratory of Plant Cell Technology, Faculty of Horticulture, Chiba University,
Matsudo 648, Chiba 278-8510,
Japan
- Center for Environment, Health and Field Sciences, Chiba University,
Kashiwa-no-ha 6-2-1, Kashiwa, Chiba 277-0082,
Japan
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17
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Qin S, Tang Y, Chen Y, Wu P, Li M, Wu G, Jiang H. Overexpression of the Starch Phosphorylase-Like Gene (PHO3) in Lotus japonicus has a Profound Effect on the Growth of Plants and Reduction of Transitory Starch Accumulation. Front Plant Sci 2016; 7:1315. [PMID: 27630651 PMCID: PMC5005325 DOI: 10.3389/fpls.2016.01315] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2016] [Accepted: 08/16/2016] [Indexed: 05/25/2023]
Abstract
Two isoforms of starch phosphorylase (PHO; EC 2.4.1.1), plastidic PHO1 and cytosolic PHO2, have been found in all plants studied to date. Another starch phosphorylase-like gene, PHO3, which is an ortholog of Chlamydomonas PHOB, has been detected in some plant lineages. In this study, we identified three PHO isoform (LjPHO) genes in the Lotus japonicus genome. Expression of the LjPHO3 gene was observed in all tissues tested in L. japonicus, and the LjPHO3 protein was located in the chloroplast. Overexpression of LjPHO3 in L. japonicus resulted in a drastic decline in starch granule sizes and starch content in leaves. The LjPHO3 overexpression transgenic seedlings were smaller, and showed decreased pollen fertility and seed set rate. Our results suggest that LjPHO3 may participate in transitory starch metabolism in L. japonicus leaves, but its catalytic properties remain to be studied.
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Affiliation(s)
- Shanshan Qin
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of SciencesGuangzhou, China
- University of Chinese Academy of SciencesBeijing, China
| | - Yuehui Tang
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of SciencesGuangzhou, China
- University of Chinese Academy of SciencesBeijing, China
| | - Yaping Chen
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of SciencesGuangzhou, China
| | - Pingzhi Wu
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of SciencesGuangzhou, China
| | - Meiru Li
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of SciencesGuangzhou, China
| | - Guojiang Wu
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of SciencesGuangzhou, China
| | - Huawu Jiang
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of SciencesGuangzhou, China
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18
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Zhang K, Song Q, Wei Q, Wang C, Zhang L, Xu W, Su Z. Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice. Plant Biotechnol J 2016; 14:1661-72. [PMID: 26806409 PMCID: PMC5066639 DOI: 10.1111/pbi.12527] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2015] [Accepted: 12/06/2015] [Indexed: 05/03/2023]
Abstract
OsSPX1, a rice SPX domain gene, involved in the phosphate (Pi)-sensing mechanism plays an essential role in the Pi-signalling network through interaction with OsPHR2. In this study, we focused on the potential function of OsSPX1 during rice reproductive phase. Based on investigation of OsSPX1 antisense and sense transgenic rice lines in the paddy fields, we discovered that the down-regulation of OsSPX1 caused reduction of seed-setting rate and filled grain number. Through examination of anthers and pollens of the transgenic and wild-type plants by microscopy, we found that the antisense of OsSPX1 gene led to semi-male sterility, with lacking of mature pollen grains and phenotypes with a disordered surface of anthers and pollens. We further conducted rice whole-genome GeneChip analysis to elucidate the possible molecular mechanism underlying why the down-regulation of OsSPX1 caused deficiencies in anthers and pollens and lower seed-setting rate in rice. The down-regulation of OsSPX1 significantly affected expression of genes involved in carbohydrate metabolism and sugar transport, anther development, cell cycle, etc. These genes may be related to pollen fertility and male gametophyte development. Our study demonstrated that down-regulation of OsSPX1 disrupted rice normal anther and pollen development by affecting carbohydrate metabolism and sugar transport, leading to semi-male sterility, and ultimately resulted in low seed-setting rate and grain yield.
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Affiliation(s)
- Kang Zhang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China
| | - Qian Song
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China
| | - Qiang Wei
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China
| | - Chunchao Wang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China
| | - Liwei Zhang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China
| | - Wenying Xu
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China
| | - Zhen Su
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China
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19
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Wu H, He X, Gong H, Luo S, Li M, Chen J, Zhang C, Yu T, Huang W, Luo J. Genetic Linkage Map Construction and QTL Analysis of Two Interspecific Reproductive Isolation Traits in Sponge Gourd. Front Plant Sci 2016; 7:980. [PMID: 27458467 PMCID: PMC4935800 DOI: 10.3389/fpls.2016.00980] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2016] [Accepted: 06/21/2016] [Indexed: 05/22/2023]
Abstract
The hybrids between Luffa acutangula (L.) Roxb. and L.cylindrica (L.) Roem. have strong heterosis effects. However, some reproductive isolation traits hindered their normal hybridization and fructification, which was mainly caused by the flowering time and hybrid pollen sterility. In order to study the genetic basis of two interspecific reproductive isolation traits, we constructed a genetic linkage map using an F2 population derived from a cross between S1174 [L. acutangula (L.) Roxb.] and 93075 [L. cylindrica (L.) Roem.]. The map spans 1436.12 CentiMorgans (cM), with an average of 8.11 cM among markers, and consists of 177 EST-SSR markers distributed in 14 linkage groups (LG) with an average of 102.58 cM per LG. Meanwhile, we conducted colinearity analysis between the sequences of EST-SSR markers and the genomic sequences of cucumber, melon and watermelon. On the basis of genetic linkage map, we conducted QTL mapping of two reproductive isolation traits in sponge gourd, which were the flowering time and hybrid male sterility. Two putative QTLs associated with flowering time (FT) were both detected on LG 1. The accumulated contribution of these two QTLs explained 38.07% of the total phenotypic variance (PV), and each QTL explained 15.36 and 22.71% of the PV respectively. Four QTLs for pollen fertility (PF) were identified on LG 1 (qPF1.1 and qPF1.2), LG 3 (qPF3) and LG 7 (qPF7), respectively. The percentage of PF explained by these QTLs varied from 2.91 to 16.79%, and all together the four QTLs accounted for 39.98% of the total PV. Our newly developed EST-SSR markers and linkage map are very useful for gene mapping, comparative genomics and molecular marker-assisted breeding. These QTLs for interspecific reproductive isolation will also contribute to the cloning of genes relating to interspecific reproductive isolation and the utilization of interspecific heterosis in sponge gourd in further studies.
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Affiliation(s)
- Haibin Wu
- Vegetable Research Institute, Guangdong Academy of Agricultural ScienceGuangzhou, China
- Guangdong Provincial Key Lab for New Technology Research on VegetablesGuangzhou, China
| | - Xiaoli He
- Vegetable Research Institute, Guangdong Academy of Agricultural ScienceGuangzhou, China
| | - Hao Gong
- Vegetable Research Institute, Guangdong Academy of Agricultural ScienceGuangzhou, China
| | - Shaobo Luo
- Vegetable Research Institute, Guangdong Academy of Agricultural ScienceGuangzhou, China
- Guangdong Provincial Key Lab for New Technology Research on VegetablesGuangzhou, China
| | - Mingzhu Li
- Vegetable Research Institute, Guangdong Academy of Agricultural ScienceGuangzhou, China
| | - Junqiu Chen
- Vegetable Research Institute, Guangdong Academy of Agricultural ScienceGuangzhou, China
| | - Changyuan Zhang
- Vegetable Research Institute, Guangdong Academy of Agricultural ScienceGuangzhou, China
| | - Ting Yu
- Agro-biological Gene Research Center, Guangdong Academy of Agricultural SciencesGuangzhou, China
| | - Wangping Huang
- Vegetable Research Institute, Guangdong Academy of Agricultural ScienceGuangzhou, China
| | - Jianning Luo
- Vegetable Research Institute, Guangdong Academy of Agricultural ScienceGuangzhou, China
- *Correspondence: Jianning Luo
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20
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Jiang G, Xiang Y, Zhao J, Yin D, Zhao X, Zhu L, Zhai W. Regulation of inflorescence branch development in rice through a novel pathway involving the pentatricopeptide repeat protein sped1-D. Genetics 2014; 197:1395-407. [PMID: 24950892 DOI: 10.1534/genetics.114.163931] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Panicle type has a direct bearing on rice yield. Here, we characterized a rice clustered-spikelet mutant, sped1-D, with shortened pedicels and/or secondary branches, which exhibits decreased pollen fertility. We cloned sped1-D and found that it encodes a pentatricopeptide repeat protein. We investigated the global expression profiles of wild-type, 9311, and sped1-D plants using Illumina RNA sequencing. The expression of several GID1L2 family members was downregulated in the sped1-D mutant, suggesting that the gibberellin (GA) pathway is involved in the elongation of pedicels and/or secondary branches. When we overexpressed one GID1L2, AK070299, in sped1-D plants, the panicle phenotype was restored to varying degrees. In addition, we analyzed the expression of genes that function in floral meristems and found that RFL and WOX3 were severely downregulated in sped1-D. These results suggest that sped1-D may prompt the shortening of pedicels and secondary branches by blocking the action of GID1L2, RFL, and Wox3. Moreover, overexpression of sped1-D in Arabidopsis resulted in the shortening of pedicels and clusters of siliques, which indicates that the function of sped1-D is highly conserved in monocotyledonous and dicotyledonous plants. Sequence data from this article have been deposited with the miRBase Data Libraries under accession no. MI0003201.
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Wang L, Shen R, Chen LT, Liu YG. Characterization of a novel DUF1618 gene family in rice. J Integr Plant Biol 2014; 56:151-158. [PMID: 24237627 DOI: 10.1111/jipb.12130] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2013] [Accepted: 11/05/2013] [Indexed: 06/02/2023]
Abstract
Domain of unknown function (DUF) proteins represent a number of gene families that encode functionally uncharacterized proteins in eukaryotes. For example, DUF1618 family members in plants possess a 56-199-amino acid conserved domain and this family has not been described previously. Here, we report the characterization of 121 DUF1618 genes identified in the rice genome. Based on phylogenetic analysis, the rice DUF1618 family was divided into two major groups, each group consisting of two clades. Most DUF1618 genes with close phylogenetic relationships are located in gene clusters on the chromosomes, indicating that gene duplications increased the number of DUF1618 genes. A search for DUF1618 genes in genomic and/or expressed sequence tag databases for 35 other plant species showed that DUF1618 genes are only present in several monocot plants, suggesting that DUF1618 is a new gene family that originated after the dicot-monocot divergence. Based on public microarray databases, most rice DUF1618 genes are expressed at relatively low levels. Further experimental analysis showed that the transcriptional levels of some DUF1618 genes varied in different cultivars, and some responded to stress and hormone conditions, suggesting their important roles for development and fitness in rice (Oryza sativa L.).
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Affiliation(s)
- Lan Wang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Life Sciences, South China Agricultural University, Guangzhou, 510642, China; College of Agriculture, South China Agricultural University, Guangzhou, 510642, China
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