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Abril AG, Calo-Mata P, Villa TG, Böhme K, Barros-Velázquez J, Sánchez-Pérez Á, Pazos M, Carrera M. High-Resolution Comparative and Quantitative Proteomics of Biogenic-Amine-Producing Bacteria and Virulence Factors Present in Seafood. J Agric Food Chem 2024; 72:4448-4463. [PMID: 38364257 PMCID: PMC10906483 DOI: 10.1021/acs.jafc.3c06607] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Revised: 12/27/2023] [Accepted: 12/29/2023] [Indexed: 02/18/2024]
Abstract
The presence of biogenic amines (histamine, tyramine, putrescine, and cadaverine) in seafood is a significant concern for food safety. This review describes for the first time a shotgun quantitative proteomics strategy to evaluate and compare foodborne strains of bacteria that produce biogenic amines in seafoods. This approach recognized 35,621 peptide spectrum matches, belonging to 20,792 peptides, and 4621 proteins. It allowed the determination of functional pathways and the classification of the strains into hierarchical clusters. The study identified a protein-protein interaction network involving 1160 nodes/10,318 edges. Proteins were related to energy pathways, spermidine biosynthesis, and putrescine metabolism. Label-free quantitative proteomics allowed the identification of differentially regulated proteins in specific strains such as putrescine aminotransferase, arginine decarboxylase, and l-histidine-binding protein. Additionally, 123 peptides were characterized as virulence factors and 299 peptide biomarkers were selected to identify bacterial species in fish products. This study presents the most extensive proteomic repository and progress in the science of food biogenic bacteria and could be applied in the food industry for the detection of bacterial contamination that produces histamine and other biogenic amines during food processing/storage.
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Affiliation(s)
- Ana G. Abril
- Department
of Food Technology, Spanish National Research
Council (CSIC), Institute of Marine Research (IIM-CSIC), 36208 Vigo, Spain
- Department
of Microbiology and Parasitology, Faculty
of Pharmacy, University of Santiago de Compostela, 15898 Santiago de Compostela, Spain
| | - Pilar Calo-Mata
- Department
of Analytical Chemistry, Nutrition and Food Science, Food Technology
Division, School of Veterinary Sciences,
University of Santiago de Compostela, Campus Lugo, 27002 Lugo, Spain
| | - Tomás G. Villa
- Department
of Microbiology and Parasitology, Faculty
of Pharmacy, University of Santiago de Compostela, 15898 Santiago de Compostela, Spain
| | - Karola Böhme
- Department
of Analytical Chemistry, Nutrition and Food Science, Food Technology
Division, School of Veterinary Sciences,
University of Santiago de Compostela, Campus Lugo, 27002 Lugo, Spain
| | - Jorge Barros-Velázquez
- Department
of Analytical Chemistry, Nutrition and Food Science, Food Technology
Division, School of Veterinary Sciences,
University of Santiago de Compostela, Campus Lugo, 27002 Lugo, Spain
| | - Ángeles Sánchez-Pérez
- Sydney
School of Veterinary Science, Faculty of Science, University of Sydney, Sydney, NSW 2006, Australia
| | - Manuel Pazos
- Department
of Food Technology, Spanish National Research
Council (CSIC), Institute of Marine Research (IIM-CSIC), 36208 Vigo, Spain
| | - Mónica Carrera
- Department
of Food Technology, Spanish National Research
Council (CSIC), Institute of Marine Research (IIM-CSIC), 36208 Vigo, Spain
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Jutras PV, Sainsbury F, Goulet MC, Lavoie PO, Tardif R, Hamel LP, D'Aoust MA, Michaud D. pH Gradient Mitigation in the Leaf Cell Secretory Pathway Attenuates the Defense Response of Nicotiana benthamiana to Agroinfiltration. J Proteome Res 2020; 19:106-118. [PMID: 31789035 DOI: 10.1021/acs.jproteome.9b00409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Partial neutralization of the Golgi lumen pH by the ectopic expression of influenza virus M2 proton channel is useful to stabilize acid-labile recombinant proteins in plant cells, but the impact of pH gradient mitigation on host cellular functions has not been investigated. Here, we assessed the unintended effects of M2 expression on the leaf proteome of Nicotiana benthamiana infiltrated with the bacterial gene vector Agrobacterium tumefaciens. An isobaric tags for relative and absolute quantification quantitative proteomics procedure was followed to compare the leaf proteomes of plants agroinfiltrated with either an "empty" vector or an M2-encoding vector. Leaves infiltrated with the empty vector had a low soluble protein content compared to noninfiltrated control leaves, associated with increased levels of stress-related proteins but decreased levels of photosynthesis-associated proteins. M2 expression partly compromised these effects of agroinfiltration to restore soluble protein content in the leaf tissue, associated with restored levels of photosynthesis-associated proteins and reduced levels of stress-related proteins in the apoplast. These data illustrate the cell-wide influence of the Golgi lumen pH homeostasis on the leaf proteome of N. benthamiana responding to microbial challenge. They also underline the relevance of assessing the eventual unintended effects of accessory proteins used to modulate specific cellular or metabolic functions in plant protein biofactories.
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Affiliation(s)
- Philippe V Jutras
- Centre de Recherche et d'Innovation sur les Végétaux , Université Laval , Québec G1V 0A6 , Canada
| | - Frank Sainsbury
- Griffith Institute for Drug Discovery , Griffith University , Nathan , QLD 4111 , Australia
| | - Marie-Claire Goulet
- Centre de Recherche et d'Innovation sur les Végétaux , Université Laval , Québec G1V 0A6 , Canada
| | | | | | | | | | - Dominique Michaud
- Centre de Recherche et d'Innovation sur les Végétaux , Université Laval , Québec G1V 0A6 , Canada
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