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Waterman JM, Cofer TM, Wang L, Glauser G, Erb M. High-resolution kinetics of herbivore-induced plant volatile transfer reveal clocked response patterns in neighboring plants. eLife 2024; 12:RP89855. [PMID: 38385996 PMCID: PMC10942584 DOI: 10.7554/elife.89855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2024] Open
Abstract
Volatiles emitted by herbivore-attacked plants (senders) can enhance defenses in neighboring plants (receivers), however, the temporal dynamics of this phenomenon remain poorly studied. Using a custom-built, high-throughput proton transfer reaction time-of-flight mass spectrometry (PTR-ToF-MS) system, we explored temporal patterns of volatile transfer and responses between herbivore-attacked and undamaged maize plants. We found that continuous exposure to natural blends of herbivore-induced volatiles results in clocked temporal response patterns in neighboring plants, characterized by an induced terpene burst at the onset of the second day of exposure. This delayed burst is not explained by terpene accumulation during the night, but coincides with delayed jasmonate accumulation in receiver plants. The delayed burst occurs independent of day:night light transitions and cannot be fully explained by sender volatile dynamics. Instead, it is the result of a stress memory from volatile exposure during the first day and secondary exposure to bioactive volatiles on the second day. Our study reveals that prolonged exposure to natural blends of stress-induced volatiles results in a response that integrates priming and direct induction into a distinct and predictable temporal response pattern. This provides an answer to the long-standing question of whether stress volatiles predominantly induce or prime plant defenses in neighboring plants, by revealing that they can do both in sequence.
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Affiliation(s)
| | | | - Lei Wang
- Institute of Plant Sciences, University of BernBernSwitzerland
| | - Gaetan Glauser
- Neuchâtel Platform of Analytical Chemistry, Faculty of Science, University of NeuchâtelNeuchâtelSwitzerland
| | - Matthias Erb
- Institute of Plant Sciences, University of BernBernSwitzerland
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Espindula E, Sperb ER, Moz B, Pankievicz VCS, Tuleski TR, Tadra-Sfeir MZ, Bonato P, Scheid C, Merib J, de Souza EM, Passaglia LMP. Effects on gene expression during maize-Azospirillum interaction in the presence of a plant-specific inhibitor of indole-3-acetic acid production. Genet Mol Biol 2023; 46:e20230100. [PMID: 37725833 PMCID: PMC10510588 DOI: 10.1590/1678-4685-gmb-2023-0100] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2023] [Accepted: 06/27/2023] [Indexed: 09/21/2023] Open
Abstract
Amongst the sustainable alternatives to increase maize production is the use of plant growth-promoting bacteria (PGPB). Azospirillum brasilense is one of the most well-known PGPB being able to fix nitrogen and produce phytohormones, especially indole-3-acetic acid - IAA. This work investigated if there is any contribution of the bacterium to the plant's IAA levels, and how it affects the plant. To inhibit plant IAA production, yucasin, an inhibitor of the TAM/YUC pathway, was applied. Plantlets' IAA concentration was evaluated through HPLC and dual RNA-Seq was used to analyze gene expression. Statistical differences between the group treated with yucasin and the other groups showed that A. brasilense inoculation was able to prevent the phenotype caused by yucasin concerning the number of lateral roots. Genes involved in the auxin and ABA response pathways, auxin efflux transport, and the cell cycle were regulated by the presence of the bacterium, yucasin, or both. Genes involved in the response to biotic/abiotic stress, plant disease resistance, and a D-type cellulose synthase changed their expression pattern among two sets of comparisons in which A. brasilense acted as treatment. The results suggest that A. brasilense interferes with the expression of many maize genes through an IAA-independent pathway.
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Affiliation(s)
- Eliandro Espindula
- Universidade Federal do Rio Grande do Sul (UFRGS), Instituto de
Biociências, Departamento de Genética, Programa de Pós-Graduação em Genética e
Biologia Molecular, Porto Alegre, RS, Brazil
| | - Edilena Reis Sperb
- Universidade Federal do Rio Grande do Sul (UFRGS), Instituto de
Biociências, Departamento de Genética, Programa de Pós-Graduação em Genética e
Biologia Molecular, Porto Alegre, RS, Brazil
| | - Brenda Moz
- Universidade Federal do Rio Grande do Sul (UFRGS), Instituto de
Biociências, Departamento de Genética, Programa de Pós-Graduação em Genética e
Biologia Molecular, Porto Alegre, RS, Brazil
| | - Vânia Carla Silva Pankievicz
- Universidade Federal do Paraná (UFPR), Centro Politécnico,
Departamento de Bioquímica e Biologia Molecular, Curitiba, PR, Brazil
| | - Thalita Regina Tuleski
- Universidade Federal do Paraná (UFPR), Centro Politécnico,
Departamento de Bioquímica e Biologia Molecular, Curitiba, PR, Brazil
| | - Michelle Zibetti Tadra-Sfeir
- Universidade Federal do Paraná (UFPR), Centro Politécnico,
Departamento de Bioquímica e Biologia Molecular, Curitiba, PR, Brazil
| | - Paloma Bonato
- Universidade Federal do Paraná (UFPR), Centro Politécnico,
Departamento de Bioquímica e Biologia Molecular, Curitiba, PR, Brazil
| | - Camila Scheid
- Universidade Federal de Ciências da Saúde de Porto Alegre (UFCSPA),
Programa de Pós-Graduação em Biociências, Porto Alegre, RS, Brazil
| | - Josias Merib
- Universidade Federal de Ciências da Saúde de Porto Alegre (UFCSPA),
Departamento de Farmacociências, Programa de Pós-Graduação em Biociências, Porto
Alegre, Brazil
| | - Emanuel Maltempi de Souza
- Universidade Federal do Paraná (UFPR), Centro Politécnico,
Departamento de Bioquímica e Biologia Molecular, Curitiba, PR, Brazil
| | - Luciane Maria Pereira Passaglia
- Universidade Federal do Rio Grande do Sul (UFRGS), Instituto de
Biociências, Departamento de Genética, Programa de Pós-Graduação em Genética e
Biologia Molecular, Porto Alegre, RS, Brazil
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Gillani SFA, Zhuang Z, Rasheed A, Haq IU, Abbasi A, Ahmed S, Wang Y, Khan MT, Sardar R, Peng Y. Brassinosteroids induced drought resistance of contrasting drought-responsive genotypes of maize at physiological and transcriptomic levels. Front Plant Sci 2022; 13:961680. [PMID: 36388543 PMCID: PMC9641234 DOI: 10.3389/fpls.2022.961680] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/05/2022] [Accepted: 09/20/2022] [Indexed: 06/16/2023]
Abstract
The present study investigated the brassinosteroid-induced drought resistance of contrasting drought-responsive maize genotypes at physiological and transcriptomic levels. The brassinosteroid (BR) contents along with different morphology characteristics, viz., plant height (PH), shoot dry weight (SDW), root dry weight (RDW), number of leaves (NL), the specific mass of the fourth leaf, and antioxidant activities, were investigated in two maize lines that differed in their degree of drought tolerance. In response to either control, drought, or brassinosteroid treatments, the KEGG enrichment analysis showed that plant hormonal signal transduction and starch and sucrose metabolism were augmented in both lines. In contrast, the phenylpropanoid biosynthesis was augmented in lines H21L0R1 and 478. Our results demonstrate drought-responsive molecular mechanisms and provide valuable information regarding candidate gene resources for drought improvement in maize crop. The differences observed for BR content among the maize lines were correlated with their degree of drought tolerance, as the highly tolerant genotype showed higher BR content under drought stress.
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Affiliation(s)
| | - Zelong Zhuang
- Gansu Provincial Key Lab of Arid Land Crop Science, College of Agronomy, Lanzhou, China
| | - Adnan Rasheed
- College of Agronomy, Hunan Agricultural University, Changsha, China
- Crop Breeding Department, Jilin Changfa Modern Agricultural Science and Technology Group, co., Ltd., Changchun, China
| | - Inzamam Ul Haq
- College of Plant Protection, Gansu Agricultural University, Lanzhou, China
| | - Asim Abbasi
- Department of Environmental Sciences, Kohsar University, Murree, Pakistan
| | - Shakil Ahmed
- Institute of Botany, University of the Punjab, Lahore, Pakistan
| | - Yinxia Wang
- Gansu Provincial Key Lab of Arid Land Crop Science, College of Agronomy, Lanzhou, China
| | - Muhammad Tajammal Khan
- Department of Botany, Division of Science and Technology, University of Education, Lahore, Pakistan
| | - Rehana Sardar
- Institute of Botany, University of the Punjab, Lahore, Pakistan
| | - Yunling Peng
- Gansu Provincial Key Lab of Arid Land Crop Science, College of Agronomy, Lanzhou, China
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Abstract
In Bogotá, Colombia, a large number of babies are fed with breast milk substitutes made from corn and plantain starch. We found 34.3% of tested samples to be contaminated with Cronobacter spp.; C. sakazakii was the most recovered species. Our findings underscore the risk for contamination of breast milk substitutes.
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Singh G, Sharma G, Kalra P, Batish DR, Verma V. Role of alkyl silatranes as plant growth regulators: comparative substitution effect on root and shoot development of wheat and maize. J Sci Food Agric 2018; 98:5129-5133. [PMID: 29635793 DOI: 10.1002/jsfa.9052] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2018] [Revised: 03/28/2018] [Accepted: 04/02/2018] [Indexed: 06/08/2023]
Abstract
BACKGROUND The present investigation reports the stimulating effects of different substituted alkyl silatranes (3a-3e) on the early seedling growth of wheat (Triticum aestivum) and maize (Zea mays). Seeds of these plants were exposed to six different concentrations (0, 10, 50, 100, 200 and 500 µmol L-1 ). The results revealed that different substitutions (3a-3e) had different effects on root and shoot elongation. Silatranes (3a-3e) were synthesized employing microwave irradiation by a solvent-mediated transesterification reaction, thereby reducing reaction times from several hours under conventional reflux conditions to 15 min under microwave irradiation. RESULTS It was of interest that the effect of these silatranes did not show a dose-dependent relationship but an optimum concentration, which was 100 µmol L-1 for maize and 200 µmol L-1 for wheat. γ-Aminopropyl silatranes (3b and 3e) gave the best results in maize, whereas γ-chloropropyl silatrane (3a) was most efficient for wheat at these optimum concentrations. CONCLUSION All the synthesized silatranes were effective in promoting root and shoot growth of wheat and maize. Furthermore, an efficient green microwave methodology was successful for the synthesis of silatranes. These observations pave the way for silatranes as efficient plant growth regulators for crops. © 2018 Society of Chemical Industry.
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Affiliation(s)
| | - Geetika Sharma
- Department of Chemistry, Panjab University, Chandigarh, India
| | - Pooja Kalra
- Department of Chemistry, Panjab University, Chandigarh, India
| | - Daizy R Batish
- Department of Botany, Panjab University, Chandigarh, India
| | - Vikas Verma
- Guru Jambheshwar University of Science and Technology, Hisar, India
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Abstract
Arbuscular mycorrhizal fungi (AMF) can promote plant growth and reduce plant uptake of heavy metals. Phosphorus (P) fertilization can affect this relationship. We investigated maize (Zea mays L.) uptake of heavy metals after soil AMF inoculation and P fertilization. Maize biomass, glomaline and chlorophyll contents and uptake of Fe, Mn, Zn, Cu, Cd and Pb have been determined in a soil inoculated with AMF (Glomus aggregatum, or Glomus intraradices) and treated with 30 or 60 µg P-K2HPO4 g-1 soil. Consistent variations were found between the two mycorrhizal species with respect to the colonization and glomalin content. Shoot dry weight and chlorophyll content were higher with G. intraradices than with G. aggregatum inoculation. The biomass was highest with 30 µg P g-1 soil. Shoot concentrations of Cd, Pb and Zn decreased with G. aggregatum inoculation, but that of Cd and Pb increased with G. intraradices inoculation. Addition of P fertilizers decreased Cd and Zn concentrations in the shoot. AMF with P fertilization greatly reduced maize content of heavy metals. The results provide that native AMF with a moderate application rate of P fertilizers can be exploited in polluted soils to minimize the heavy metals uptake and to increase maize growth.
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Affiliation(s)
- Nivien Allam Nafady
- a Department of Botany and Microbiology , Faculty of Sciences, Assiut University , Assiut , Egypt
| | - Ahmed Elgharably
- b Department of Soils and Water , Faculty of Agriculture, Assiut University , Assiut , Egypt
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Sosso D, Canut M, Gendrot G, Dedieu A, Chambrier P, Barkan A, Consonni G, M. Rogowsky P. PPR8522 encodes a chloroplast-targeted pentatricopeptide repeat protein necessary for maize embryogenesis and vegetative development. J Exp Bot 2012; 63:5843-57. [PMID: 22945943 PMCID: PMC3467297 DOI: 10.1093/jxb/ers232] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
The pentatricopeptide repeat (PPR) domain is an RNA binding domain allowing members of the PPR superfamily to participate in post-transcriptional processing of organellar RNA. Loss of PPR8522 from maize (Zea mays) confers an embryo-specific (emb) phenotype. The emb8522 mutation was isolated in an active Mutator (Mu) population and co-segregation analysis revealed that it was tightly linked to a MuDR insertion in the first exon of PPR8522. Independent evidence that disruption of PPR8522 caused the emb phenotype was provided by fine mapping to a region of 116kb containing no other gene than PPR8522 and complementation of the emb8522 mutant by a PPR8522 cDNA. The deduced PPR8522 amino acid sequence of 832 amino acids contains 10 PPR repeats and a chloroplast target peptide, the function of which was experimentally demonstrated by transient expression in Nicotiana benthamiana. Whereas mutant endosperm is apparently normal, mutant embryos deviate from normal development as early as 3 days after pollination, are reduced in size, exhibit more or less severe morphological aberrations depending on the genetic background, and generally do not germinate. The emb8522 mutation is the first to associate the loss of a PPR gene with an embryo-lethal phenotype in maize. Analyses of mutant plantlets generated by embryo-rescue experiments indicate that emb8522 also affects vegetative plant growth and chloroplast development. The loss of chloroplast transcription dependent on plastid-encoded RNA polymerase is the likely cause for the lack of an organized thylakoid network and an albino, seedling-lethal phenotype.
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Affiliation(s)
- Davide Sosso
- Université de Lyon, Ecole Normale Supérieure de Lyon,
Université Lyon 1, Unité Reproduction et Développement des
Plantes,F-69364 Lyon,France
- INRA, UMR879 Reproduction et Développement des Plantes,F-69364 Lyon,France
- CNRS, UMR5667 Reproduction et Développement des Plantes,F-69364 Lyon,France
- Dipartimento di Produzione Vegetale, Università degli Studi di
Milano,20133 Milan,Italy
| | - Matthieu Canut
- Université de Lyon, Ecole Normale Supérieure de Lyon,
Université Lyon 1, Unité Reproduction et Développement des
Plantes,F-69364 Lyon,France
- INRA, UMR879 Reproduction et Développement des Plantes,F-69364 Lyon,France
- CNRS, UMR5667 Reproduction et Développement des Plantes,F-69364 Lyon,France
| | - Ghislaine Gendrot
- Université de Lyon, Ecole Normale Supérieure de Lyon,
Université Lyon 1, Unité Reproduction et Développement des
Plantes,F-69364 Lyon,France
- INRA, UMR879 Reproduction et Développement des Plantes,F-69364 Lyon,France
- CNRS, UMR5667 Reproduction et Développement des Plantes,F-69364 Lyon,France
| | - Annick Dedieu
- Université de Lyon, Ecole Normale Supérieure de Lyon,
Université Lyon 1, Unité Reproduction et Développement des
Plantes,F-69364 Lyon,France
- INRA, UMR879 Reproduction et Développement des Plantes,F-69364 Lyon,France
- CNRS, UMR5667 Reproduction et Développement des Plantes,F-69364 Lyon,France
| | - Pierre Chambrier
- Université de Lyon, Ecole Normale Supérieure de Lyon,
Université Lyon 1, Unité Reproduction et Développement des
Plantes,F-69364 Lyon,France
- INRA, UMR879 Reproduction et Développement des Plantes,F-69364 Lyon,France
- CNRS, UMR5667 Reproduction et Développement des Plantes,F-69364 Lyon,France
| | - Alice Barkan
- Institute of Molecular Biology, University of Oregon, EugeneOR 97403,USA
| | - Gabriella Consonni
- Dipartimento di Produzione Vegetale, Università degli Studi di
Milano,20133 Milan,Italy
| | - Peter M. Rogowsky
- Université de Lyon, Ecole Normale Supérieure de Lyon,
Université Lyon 1, Unité Reproduction et Développement des
Plantes,F-69364 Lyon,France
- INRA, UMR879 Reproduction et Développement des Plantes,F-69364 Lyon,France
- CNRS, UMR5667 Reproduction et Développement des Plantes,F-69364 Lyon,France
- To whom correspondence should be addressed: E-mail:
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Casati P, Morrow DJ, Fernandes JF, Walbot V. UV-B signaling in maize: transcriptomic and metabolomic studies at different irradiation times. Plant Signal Behav 2011; 6:1926-31. [PMID: 22105027 PMCID: PMC3337180 DOI: 10.4161/psb.6.12.18164] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Plants have evolved adaptations to environmental factors, including UV-B present in solar radiation. Deployment of specific adaptive phenotypes to avoid or repair UV-B damage requires physiological and developmental acclimation to variable UV-B fluence. To gain a better understanding of the events in UV-B acclimation, we have analyzed a 5min to 6h time course of transcriptome and metabolome responses in irradiated and shielded leaves and in immature maize ears to unravel the systemic physiological and developmental responses in exposed and shielded organs. Within 10 min of UV-B exposure, transcripts are changed not only in irradiated leaves, but also in shielded tissues. The number of UV-B-regulated transcripts rapidly increases with exposure length. Interestingly, after 10 min of exposure, the overlap in transcriptome changes in irradiated and shielded organs is significant; while, after 6h of UV-B, most transcripts are specific for each tissue under study. We suggest that early events in all tissues may be elicited by common signaling pathways, while at longer exposure times responses become more organ-specific. Our working hypothesis is that mobile signaling molecules are generated in irradiated organs to elicit the initial responses. We found several metabolites that rapidly change after different treatments during the timecourse; myoinositol is one candidate metabolite based on its rapid modulation in all organs. There is also support from RNA profiling: after 1h UV-B, transcripts for myoinositol-1-phosphate synthase are decreased in both irradiated and shielded leaves suggesting downregulation of biogenesis.
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Affiliation(s)
- Paula Casati
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, Argentina.
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Bosch M, Mayer CD, Cookson A, Donnison IS. Identification of genes involved in cell wall biogenesis in grasses by differential gene expression profiling of elongating and non-elongating maize internodes. J Exp Bot 2011; 62:3545-61. [PMID: 21402660 PMCID: PMC3130177 DOI: 10.1093/jxb/err045] [Citation(s) in RCA: 83] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2010] [Revised: 01/20/2011] [Accepted: 02/01/2011] [Indexed: 05/18/2023]
Abstract
Despite the economic importance of grasses as food, feed, and energy crops, little is known about the genes that control their cell wall synthesis, assembly, and remodelling. Here a detailed transcriptome analysis that allowed the identification of genes involved in grass cell wall biogenesis is provided. Differential gene expression profiling, using maize oligonucleotide arrays, was used to identify genes differentially expressed between an elongating internode, containing cells exhibiting primary cell wall synthesis, and an internode that had just ceased elongation and in which many cells were depositing secondary cell wall material. This is one of only a few studies specifically aimed at the identification of cell wall-related genes in grasses. Analysis identified new candidate genes for a role in primary and secondary cell wall biogenesis in grasses. The results suggest that many proteins involved in cell wall processes during normal development are also recruited during defence-related cell wall remodelling events. This work provides a platform for studies in which candidate genes will be functionally tested for involvement in cell wall-related processes, increasing our knowledge of cell wall biogenesis and its regulation in grasses. Since several grasses are currently being developed as lignocellulosic feedstocks for biofuel production, this improved understanding of grass cell wall biogenesis is timely, as it will facilitate the manipulation of traits favourable for sustainable food and biofuel production.
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Affiliation(s)
- Maurice Bosch
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Plas Gogerddan, Aberystwyth SY23 3EB, UK.
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Łebska M, Ciesielski A, Szymona L, Godecka L, Lewandowska-Gnatowska E, Szczegielniak J, Muszyńska G. Phosphorylation of maize eukaryotic translation initiation factor 5A (eIF5A) by casein kinase 2: identification of phosphorylated residue and influence on intracellular localization of eIF5A. J Biol Chem 2010; 285:6217-26. [PMID: 20018887 PMCID: PMC2825417 DOI: 10.1074/jbc.m109.018770] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2009] [Revised: 12/15/2009] [Indexed: 11/06/2022] Open
Abstract
Maize eukaryotic translation initiation factor 5A (ZmeIF5A) co-purifies with the catalytic alpha subunit of protein kinase CK2 and is phosphorylated by this enzyme. Phosphorylated ZmeIF5A was also identified after separation of maize leaf proteins by two-dimensional electrophoresis. Multiple sequence alignment of eIF5A proteins showed that in monocots, in contrast to other eukaryotes, there are two serine/threonine residues that could potentially be phosphorylated by CK2. To identify the phosphorylation site(s) of ZmeIF5A, the serine residues potentially phosphorylated by CK2 were mutated. ZmeIF5A and its mutated variants S2A and S4A were expressed in Escherichia coli and purified. Of these recombinant proteins, only ZmeIF5A-S2A was not phosphorylated by maize CK2. Also, Arabidopsis thaliana and Saccharomyces cerevisiae eIF5A-S2A mutants were not phosphorylated despite effective phosphorylation of wild-type variants. A newly developed method exploiting the specificity of thrombin cleavage was used to confirm that Ser(2) in ZmeIF5A is indeed phosphorylated. To find a role of the Ser(2) phosphorylation, ZmeIF5A and its variants mutated at Ser(2) (S2A and S2D) were transiently expressed in maize protoplasts. The expressed fluorescence labeled proteins were visualized by confocal microscopy. Although wild-type ZmeIF5A and its S2A variant were distributed evenly between the nucleus and cytoplasm, the variant with Ser(2) replaced by aspartic acid, which mimics a phosphorylated serine, was sequestered in the nucleus. These results suggests that phosphorylation of Ser(2) plays a role in regulation of nucleocytoplasmic shuttling of eIF5A in plant cells.
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Affiliation(s)
- Maja Łebska
- From the Institute of Biochemistry and Biophysics, Polish Academy of Science, Pawińskiego 5a, 02-106 Warsaw, Poland
| | - Arkadiusz Ciesielski
- From the Institute of Biochemistry and Biophysics, Polish Academy of Science, Pawińskiego 5a, 02-106 Warsaw, Poland
| | - Lidia Szymona
- From the Institute of Biochemistry and Biophysics, Polish Academy of Science, Pawińskiego 5a, 02-106 Warsaw, Poland
| | - Luiza Godecka
- From the Institute of Biochemistry and Biophysics, Polish Academy of Science, Pawińskiego 5a, 02-106 Warsaw, Poland
| | | | - Jadwiga Szczegielniak
- From the Institute of Biochemistry and Biophysics, Polish Academy of Science, Pawińskiego 5a, 02-106 Warsaw, Poland
| | - Grażyna Muszyńska
- From the Institute of Biochemistry and Biophysics, Polish Academy of Science, Pawińskiego 5a, 02-106 Warsaw, Poland
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11
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Casati P, Walbot V. Maize lines expressing RNAi to chromatin remodeling factors are similarly hypersensitive to UV-B radiation but exhibit distinct transcriptome responses. Epigenetics 2008; 3:216-29. [PMID: 18719398 PMCID: PMC2551322 DOI: 10.4161/epi.3.4.6631] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Abstract
RNAi knockdown lines targeting two putative chromatin factors (a methyl-CpG-binding domain protein MBD101 and a chromatin remodeling complex protein CHC101) exhibit identical phenotypic consequences after UV-B exposure including necrosis in adult leaves and seedling death. Here we report that these RNAi lines exhibit substantially different transcriptome changes assessed on a 44 K Agilent oligonucleotide array platform compared to each other and to UV-B tolerant non-transgenic siblings both before and after 8 h of UV-B exposure. Adult maize leaves express approximately 26,000 transcript types under greenhouse growth conditions; after 8 h of UV-B exposure 267 transcripts exhibit an expression change in the B73 control line. Most of these transcript abundance changes in B73 after UV-B treatment are not found in the two RNAi knockdown lines: 119 upregulated transcript types and 128 downregulated types are uniquely modulated in B73. The mbd101 RNAi line shows many more line-specific transcript changes (897 up, 68 down) than either B73 or the chc101 line (72 up, 103 down). By functional analysis, the largest category of genes with predicted functions affected by UV-B is the DNA/chromatin binding group. Differential activation of suites of transcription factors in the control and transgenic lines are the likely explanation for the divergent transcriptome profiles.
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Affiliation(s)
- Paula Casati
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Suipacha 531, 2000 Rosario, Argentina
| | - Virginia Walbot
- Department of Biology, 385 Serra Mall, Stanford University, Stanford, CA, USA 94305−5020.
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12
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Abstract
To improve nitrogen (N) efficiency in agriculture, integrated N management strategies that take into consideration improved fertilizer, soil, and crop management practices are necessary. This paper reports results of field experiments in which maize (Zea mays L.) and oilseed rape (Brassica napus L.) cultivars were compared with respect to their agronomic N efficiency (yield at a given N supply), N uptake efficiency (N accumulation at a given N supply), and N utilization efficiency (dry matter yield per unit N taken up by the plant). Under conditions of high N supply, significant differences among maize cultivars were found in shoot N uptake, soil nitrate depletion during the growing season, and the related losses of nitrate through leaching after the growing season. Experiments under conditions of reduced N supply indicated a considerable genotypic variation in reproductive yield formation of both maize and oilseed rape. High agronomic efficiency was achieved by a combination of high uptake and utilization efficiency (maize), or exclusively by high uptake efficiency (rape). N-efficient cultivars of both crops were characterized by maintenance of a relatively high N-uptake activity during the reproductive growth phase. In rape this trait was linked with leaf area and photosynthetic activity of leaves. We conclude that growing of N-efficient cultivars may serve as an important element of integrated nutrient management strategies in both low- and high-input agriculture.
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Affiliation(s)
- F Weisler
- Institute of Plant Nutrition, University of Hannover, Germany.
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