Large vibrationally induced parity violation effects in CHDBrI. Chem Commun (Camb) 2023;59:14579-14582. [PMID: 37990542 DOI: 10.1039/d3cc03787h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0]

The isotopically chiral molecular ion CHDBrI+ is identified as an exceptionally promising candidate for the detection of parity violation in vibrational transitions. The largest predicted parity-violating frequency shift reaches 1.8 Hz for the hydrogen wagging mode which has a sub-Hz natural line width and its vibrational frequency auspiciously lies in the available laser range. In stark contrast to this result, the parent neutral molecule is two orders of magnitude less sensitive to parity violation. The origin of this effect is analyzed and explained. Precision vibrational spectroscopy of CHDBrI+ is feasible as it is amenable to preparation at internally low temperatures and resistant to predissociation, promoting long interrogation times (Landau et al., J. Chem. Phys., 2023, 159, 114307). The intersection of these properties in this molecular ion places the first observation of parity violation in chiral molecules within reach.

Chiral molecule candidates for trapped ion spectroscopy by ab initio calculations: From state preparation to parity violation

Parity non-conservation (PNC) due to the weak interaction is predicted to give rise to enantiomer dependent vibrational constants in chiral molecules, but the phenomenon has so far eluded experimental observation. The enhanced sensitivity of molecules to physics beyond the Standard Model (BSM) has led to substantial advances in molecular precision spectroscopy, and these may be applied to PNC searches as well. Specifically, trapped molecular ion experiments leverage the universality of trapping charged particles to optimize the molecular ion species studied toward BSM searches, but in searches for PNC, only a few chiral molecular ion candidates have been proposed so far. Importantly, viable candidates need to be internally cold, and their internal state populations should be detectable with high quantum efficiency. To this end, we focus on molecular ions that can be created by near threshold resonant two-photon ionization and detected via state-selective photo-dissociation. Such candidates need to be stable in both charged and neutral chiral versions to be amenable to these methods. Here, we present a collection of suitable chiral molecular ion candidates we have found, including CHDBrI+ and CHCaBrI+, that fulfill these conditions according to our ab initio calculations. We find that organo-metallic species have low ionization energy as neutrals and relatively high dissociation thresholds. Finally, we compute the magnitude of the PNC values for vibrational transitions for some of these candidates. An experimental demonstration of state preparation and readout for these candidates will be an important milestone toward measuring PNC in chiral molecules for the first time.

QED Theory for Controlling the Molecule-Cavity Interaction: From Solvable Analytical Models to Realistic Ones

The study of the interactions of chemical systems in a cavity and the ability to control the reactions inside the cavities become an evolving and hot field of research. Despite that, there is still a significant gap between experiment and theory. Herein, we aim to bridge this gap by starting with the analysis of solvable analytical models for reactions inside a cavity, then continuing to realistic models for many molecules inside a single mode and in a multimode cavity. In addition, we investigate different ways to control the strength of the molecule-cavity coupling term, which in turn allows controlling chemical reactions. Our analysis can benefit the development of ab initio computational methods to simulate molecular systems in polariton cavities; in addition, we show how to parameterize the model Hamiltonians in order to simulate a specific molecular system. Finally, we demonstrate the possibility of achieving isomerization, in case it is prohibited out of the cavity, by placing the reaction inside a cavity.

Complex energies and transition dipoles for shape-type resonances of uracil anion from stabilization curves via Padé

Absorption of slow moving electrons by neutral ground state nucleobases has been known to produce resonance metastable states. There are indications that such metastable states may play a key role in DNA/RNA damage. Therefore, herein, we present an ab initio non-Hermitian investigation of the resonance positions and decay rates for the low lying shape-type states of the uracil anion. In addition, we calculate the complex transition dipoles between these resonance states. We employ the resonance via Padé (RVP) method to calculate these complex properties from real stabilization curves by analytical dilation into the complex plane. This method has already been successfully applied to many small molecular systems, and herein, we present the first application of RVP to a medium-sized system. The presented resonance energies are optimized with respect to the size of the basis set and compared with previous theoretical studies and experimental findings. Complex transition dipoles between the shape-type resonances are computed using the optimal basis set. The ability to calculate ab initio energies and lifetimes of biologically relevant systems paves the way for studying reactions of such systems in which autoionization takes place, while the ability to also calculate their complex transition dipoles opens the door for studying photo-induced dynamics of such biological molecules.

Enhanced Coupling of Electron and Nuclear Spins by Quantum Tunneling Resonances

Noble-gas spins feature hours-long coherence times, owing to their great isolation from the environment, and find practical usage in various applications. However, this isolation leads to extremely slow preparation times, relying on weak spin transfer from an electron-spin ensemble. Here we propose a controllable mechanism to enhance this transfer rate. We analyze the spin dynamics of helium-3 atoms with hot, optically excited potassium atoms and reveal the formation of quasibound states in resonant binary collisions. We find a resonant enhancement of the spin-exchange cross section by up to 6 orders of magnitude and 2 orders of magnitude enhancement for the thermally averaged, polarization rate coefficient. We further examine the effect for various other noble gases and find that the enhancement is universal. We outline feasible conditions under which the enhancement may be experimentally observed and practically utilized.

Software for the frontiers of quantum chemistry: An overview of developments in the Q-Chem 5 package

This article summarizes technical advances contained in the fifth major release of the Q-Chem quantum chemistry program package, covering developments since 2015. A comprehensive library of exchange-correlation functionals, along with a suite of correlated many-body methods, continues to be a hallmark of the Q-Chem software. The many-body methods include novel variants of both coupled-cluster and configuration-interaction approaches along with methods based on the algebraic diagrammatic construction and variational reduced density-matrix methods. Methods highlighted in Q-Chem 5 include a suite of tools for modeling core-level spectroscopy, methods for describing metastable resonances, methods for computing vibronic spectra, the nuclear-electronic orbital method, and several different energy decomposition analysis techniques. High-performance capabilities including multithreaded parallelism and support for calculations on graphics processing units are described. Q-Chem boasts a community of well over 100 active academic developers, and the continuing evolution of the software is supported by an "open teamware" model and an increasingly modular design.

Uniform vs Partial Scaling within Resonances via Padé Based on the Similarities to Other Non-Hermitian Methods: Illustration for the Beryllium 1s22p3s State

Resonance via Padé (RVP) is an efficient method for calculating autoionization resonance states. It is based on the stabilization technique in which the basis set is scaled. The scaling can be uniform (i.e., all basis functions are scaled) or partial. Herein, we compare the two RVP scaling schemes for calculating an autoionization eigenvalue; moreover, the effect of freezing the core electrons is intertwined within this comparison. In order to study the different behavior of the RVP schemes, we associate each RVP scaling scheme with a complex contour of integration. Similarities between RVP and other non-Hermitian methods emerge from the generated contours, which suggest that RVP introduces similar outgoing boundary conditions as the complex scaling (CS), complex basis function (CBF), and reflection-free complex absorbing potential (RF-CAP) methods. A uniform-RVP contour, unlike a partial one, immediately penetrates the complex plane and influences the interaction region. Hence, uniform scaling within RVP destroys the description of the core electrons, as well as the description of the reference state, and yields less reliable results than partial scaling. The 1s²2p3s ¹P autoionization state of Be, at the equation-of-motion coupled-cluster level, is used as our case study model.

Quantum Effects Dominating the Interatomic Coulombic Decay of an Extreme System

LiHe is an extreme open-shell system. It is among the weakest bound systems known, and its mean interatomic distance extends dramatically into the classical forbidden region. Upon 1s → 2p excitation of He, interatomic Coulombic decay (ICD) takes place in which the electronically excited helium atom relaxes and transfers its excess energy to ionize the neighboring lithium atom. A substantial part of the decay is found to be to the dissociation continuum producing Li⁺ and He atoms. The distribution of the kinetic energy released by the ICD products is found to be highly oscillatory. Its analysis reveals that quantum phase shifts between the decaying states and the dissociating final states are controlling this ICD reaction. The semiclassical reflection principle, which commonly explains ICD reactions, fails. The process is expected to be amenable to experiment.

Ab Initio Complex Transition Dipoles between Autoionizing Resonance States from Real Stabilization Graphs

Electronic transition dipoles are crucial for investigating light-matter interactions. Transition dipoles between metastable (autoionizing resonance) states become complex within non-Hermitian formalism, analogous to the resonance energies. Herein, we put forward a robust method for evaluating complex transition dipoles based on real ab initio stabilization calculations. The complex transition dipoles are obtained by analytical continuation via the Padé approximant and are identified as stationary solutions in the complex plane. The capability of the new approach is demonstrated for several transition dipoles of the doubly excited helium resonance states, for which exact values are available for comparison. Nevertheless, the method presented here has no inherent limitation and is suitable for polyatomic systems.

Quantum Effects in Cold Molecular Collisions from Spatial Polarization of Electronic Wave Function

The quantum phenomena of electronic and nuclear resonances are associated with structures in measured cross sections. Such structures were recently reported in a cold chemistry experiment of ground-state hydrogen isotopologues (H₂/HD) colliding with helium atoms in the excited triplet P-state (He(2³P)) [Shagam et al. Nature Chem. 2015, 7, 921], but a theoretical explanation of their appearance was not given. This work presents a quantum explanation and simulation of this experiment, which are strictly based on ab initio calculations. We incorporate complex potential energy surfaces into adiabatic variational theory, thereby reducing the multidimensional scattering process to a series of uncoupled 1D scattering "gedanken experiments". Our theoretical result, which is in remarkable agreement with the experimental data, manifests that the structures in the observed reaction rate coefficient are due to the spatial arrangement of the excited He p-orbitals with respect to the interaction axis, consequently changing the system from a normal two-rotor model to a three-rotor one. This theoretical scheme can be applied to explain and predict cross sections or reaction rate coefficients for any resonance-related phenomenon.

Tin-carbon clusters and the onset of microscopic level immiscibility: Experimental and computational study

We report the experimental observation and computational analysis of the binary tin-carbon gas phase species. These novel ionic compounds are generated by impact of C60(-) anions on a clean tin target at some kiloelectronvolts kinetic energies. Positive Sn(m)C(n)(+) (m = 1-12, 1 ≤ n ≤ 8) ions were detected mass spectrometrically following ejection from the surface. Impact induced shattering of the C60(-) ion followed by sub-surface penetration of the resulting atomic carbon flux forces efficient mixing between target and projectile atoms even though the two elements (Sn/C) are completely immiscible in the bulk. This approach of C60(-) ion beam induced synthesis can be considered as an effective way for producing novel metal-carbon species of the so-called non-carbide forming elements, thus exploring the possible onset of molecular level miscibility in these systems. Sn2C2(+) was found to be the most abundant carbide cluster ion. Its instantaneous formation kinetics and its measured kinetic energy distribution while exiting the surface demonstrate a single impact formation/emission event (on the sub-ps time scale). Optimal geometries were calculated for both neutral and positively charged species using Born-Oppenheimer molecular dynamics for identifying global minima, followed by density functional theory (DFT) structure optimization and energy calculations at the coupled cluster singles, doubles and perturbative triples [CCSD(T)] level. The calculated structures reflect two distinct binding tendencies. The carbon rich species exhibit polyynic/cummulenic nature (tin end capped carbon chains) while the more stoichiometrically balanced species have larger contributions of metal-metal bonding, sometimes resulting in distinct tin and carbon moieties attached to each other (segregated structures). The Sn2C(n) (n = 3-8) and Sn2C(n)(+) (n = 2-8) are polyynic/cummulenic while all neutral Sn(m)C(n) structures (m = 3-4) could be described as small tin clusters (dimer, trimer, and tetramer, correspondingly) attached to a nearly linear carbon chain. For example, the 1:1 (Sn:C) Sn3C3 and Sn4C4 clusters are composed of all-tin triangle and rhombus, correspondingly, with a short carbon chain (C3, C4) attached on top. The cationic Sn3C(n)(+) (n = 1-5) and Sn4C(n)(+) (n = 1-4) species exhibit various intermediate geometries. Structure calculations at the CCSD(T) level are essential since the segregation effect is not as easily evident based on the most stable structures calculated by DFT alone. Dependences of bond energies (per atom) reflect the evolution of the segregation effect. The mass spectral abundances could be reasonably rationalized in terms of calculated stabilities of the cluster ions with respect to various dissociation channels.

Liver injuries in children: the role of selective non-operative management

INTRODUCTION

This review article on the management of blunt liver injury in children is based on the authors' experience of 311 patients over a 22-year period.

MATERIAL AND METHODS

All children presenting to our institution with confirmed blunt liver trauma were studied retrospectively. Hospital folders of 311 patients were analysed. Information was gathered about the clinical presentation, associated injuries, grade of injury, transfusion requirements and haemodynamic stability to examine factors influencing outcome.

RESULTS

The age of patients ranged between 3 weeks and 12 years (mean of 7 years). Injuries as a result of motor vehicle accidents (MVAs) were the most common (268; 232 pedestrian and 36 passenger), other causes were falls (26) assaults or child abuse(15), bicycle handle bar injury (2). One hundred and thirty-six patients sustained an isolated hepatic injury and 175 had multiple injuries. Associated injuries included 147 head injuries, 131 fractures, 66 thoracic and 143 intra-abdominal (74 spleen, 45 renal, 4 pancreatic and 4 hollow viscus). Two patients died soon after arrival, 21 underwent laparotomy, 13 of which were liver related, while 288 were treated non-operatively. One hundred and six patients required blood transfusion (mean of 21.3 ml/kg); 30% of the nonoperative group and 100% of the operative group. There were three fatalities from the operative group (1% total mortality), one secondary to a severe, head injury, one liver haemorrhage and one from multi-organ failure

DISCUSSION

The vast majority (93%) was successfully treated non-operatively with only 4% coming to liver related laparotomy, complications were lower, transfusions less and the in-hospital occupancy was shorter. Complication rate was 8% and mortality was 1%.

CONCLUSION

We confirm the success selective non-operative management of blunt liver trauma as adopted by this institution 20 years ago. It is now proven treatment in an appropriate centre. However, the challenge is to identify the severely injured child early and institute aggressive resuscitation and expedite laparotomy when indicated.

Mixed-sector intermediate Hamiltonian Fock-space coupled cluster approach

An alternative formulation of the intermediate Hamiltonian Fock-space coupled cluster scheme developed before is presented. The methodological and computational advantages of the new formulation include the possibility of using a model space with determinants belonging to different Fock-space sectors. This extends the scope of application of the multireference coupled cluster method, and makes possible the use of quasiclosed shells (e.g., p2, d4) as reference states. Representative applications are described, including electron affinities of group-14 atoms, ionization potentials of group-15 elements, and ionization potentials and excitation energies of silver and gold. Excellent agreement with experiment (a few hundredths of an electronvolt) is obtained, with significant improvement (by a factor of 5-10 for p3 states) over Fock-space coupled cluster results. Many states not reachable by the Fock-space approach can now be studied.

A cytoplasmically inherited mutant controlling early chloroplast development in barley seedlings

Cytoplasmic line 2 (CL2) has been previously reported as a cytoplasmically inherited chlorophyll-deficient mutant selected from a chloroplast-mutator genotype of barley. It was characterized by a localized effect on the upper part of the first-leaf blade. At emergence the CL2 seedlings-phenotype varied from a grainy light green to an albino color. They gradually greened during the following days, starting from the base of the blade and extending to cover most of its surface when it was fully grown. The present results, from both light microscopy and transmission electron microscopy (TEM), confirmed the previously described positional and time-dependent expression of the CL2 syndrome along the first-leaf blade. During the first days after emergence, light microscopy showed a normally developed chloroplast at the middle part of the CL2 first-leaf blade, meanwhile at the tip only small plastids were observed. TEM showed that the shapes and the internal structure of the small plastids were abnormal, presenting features of proplastids, amyloplasts and/or senescent gerontoplasts. Besides, they lack plastid ribosomes, contrasting with what was observed inside chloroplasts from normal tips, which presented abundant ribosomes. Phenotypic observations and spectrophotometric analysis of seedlings produced by mother plants that had been grown under different temperatures indicated that higher temperatures during seed formation were negatively associated with pigment content in CL2 seedlings. In contrast, higher temperatures during the growth of CL2 seedlings have been associated with increased pigment content. Aqueous solution with kanamycin and streptomycin, which are antibiotics known to interfere with plastid gene translation, were used for imbibition of wild-type and CL2 seeds. Antibiotic treatments differentially reduced the chlorophyll content in the upper part of the first-leaf blade in CL2, but not in wild-type seedlings. These results suggest that in the wild-type, plastid-gene proteins which are necessary for chloroplast development and chlorophyll synthesis in the upper part of the first-leaf blade are usually synthesized during embryogenesis. However, under certain circumstances, in CL2 seedlings, they would be synthesized after germination. In addition, a shortening of the sheath has been observed in association with pigment decrease suggesting the existence of plastid factors affecting the expression of some nuclear genes. We consider the CL2 mutant a unique experimental material useful to study biological phenomena and external factors regulating plastid, and nuclear gene expression during embryogenesis and early seedling development.

Long-term efficacy of combination therapy with interferon-alpha 2b and ribavirin for severe chronic hepatitis C in HIV-infected patients

BACKGROUND

We have assessed the long-term efficacy and safety of a combination therapy of interferon alpha-2b (IFN) and ribavirin (RBV) for the treatment of severe chronic hepatitis C in co-infected HIV-seropositive patients in an open prospective study.

METHODS

Fifty-one patients were treated for 12 months. Mean baseline CD4 cell count, alanine aminotransferase and aspartate aminotransferase were 412 +/- 232 x 106/l, 113 +/- 75 IU/l and 111 +/- 84 IU/l respectively. The mean Knodell score was 11.5 +/- 2.1 with 28 patients (55%) exhibiting histological evidence of active cirrhosis.

RESULTS

Fifteen (29%) patients discontinued the treatment prematurely because of adverse events. An end of treatment response (ETR) as defined by the lack of detectable hepatitis C virus (HCV) RNA in plasma at the end of treatment was achieved in 15 patients (29%). A sustained virological response (SVR), defined by the lack of detectable HCV RNA in plasma 6 months after completion of combination therapy, was achieved in 11 patients (21%). The HCV genotype 3a was associated with ETR and SVR (P = 0.002 and P = 0.003, respectively). HCV viraemia at baseline was lower in patients who achieved SVR and ETR than in those who did not (6.7 +/- 7.8 versus 24 +/- 26.7 x 10(6) genome equivalents/ml, P = 0.03 and 14.3 +/- 28.7 versus 22.5 +/- 23, P = 0.05, respectively).

CONCLUSION

Our results indicate that combination therapy with IFN and RBV is effective in approximately 20% of co-infected patients with severe liver disease.