Long-term female bias in sex ratios across life stages of Harpy Eagle, a large raptor exhibiting reverse sexual size dimorphism

The primary (PSR), secondary (SSR) and adult (ASR) sex ratios of sexually reproducing organisms influence their life histories. Species exhibiting reversed sexual size dimorphism (RSD) may imply a higher cost of female production or lower female survival, thus generating biases in PSR, SSR and/or ASR towards males. The Harpy Eagle is the world's largest eagle exhibiting RSD. This species is found in the Neotropical region and is currently threatened with extinction. We used molecular markers to determine the sex of 309 Harpy Eagles spanning different life stages-eaglets, subadults and adults-from 1904 to 2021 within the Amazon Rainforest and Atlantic Forest. Sex ratios for all life stages revealed a female-biased deviation across all periods and regions. Our results suggest that the population bias towards females is an evolutionary ecological pattern of this species, and SSR and ASR likely emerged from the PSR. This natural bias towards females may be compensated by an earlier sexual maturation age of males, implying a longer reproductive lifespan and a higher proportion of sexually active males. A better understanding of the Harpy Eagle's life history can contribute to understanding sex-role evolution and enable more appropriate conservation strategies for the species.

The prey of the Harpy Eagle in its last reproductive refuges in the Atlantic Forest

The Harpy Eagle (Harpia harpyja) is threatened with extinction throughout its distribution in the neotropical forests. In the Atlantic Forest, deforestation has reduced the number of suitable habitats, with only a few remnant forest fragments hosting active nests; currently, the only known nests in this region are in the Central Atlantic Forest Ecological Corridor (CAFEC), in Brazil. Little is known about Harpy Eagle diets in this region, despite this information being essential for developing effective conservation strategies. We classified the composition, frequency, richness, ecological attributes, and conservation status of the species that make up the Harpy Eagle's diet in its last refuges in the CAFEC. Between 2017 and 2021, we collected and analyzed 152 prey remains and 285 camera trap photographs from seven active nests. We identified at least 16 mammal species (96.7%), one parrot and other bird remains (3.3%). The Harpy Eagle's diet consisted mainly of medium-sized arboreal, folivorous, frugivorous, and diurnal mammals. Five prey species are currently threatened with extinction at global, six at national and seven at regional levels. The majority of the diet consists of Sapajus robustus, which is threatened, and Bradypus variegatus, which is not threatened. In addition to the effects of habitat loss and hunting, the Harpy Eagle may also suffer from the decline in the populations of their prey in the Atlantic Forest.

Long-term Ecological Research: Chasing fashions or being prepared for fashion changes?

Long-term-ecological-research (LTER) faces many challenges, including the difficulty of obtaining long-term funding, changes in research questions and sampling designs, keeping researchers collecting standardized data for many years, impediments to interactions with local people, and the difficulty of integrating the needs of local decision makers with "big science". These issues result in a lack of universally accepted guidelines as to how research should be done and integrated among LTER sites. Here we discuss how the RAPELD (standardized field infrastructure system), can help deal with these issues as a complementary technique in LTER studies, allowing comparisons across landscapes and ecosystems and reducing sampling costs. RAPELD uses local surveys to understand broad spatial and temporal patterns while enhancing decision-making and training of researchers, local indigenous groups and traditional communities. Sampling of ecological data can be carried out by different researchers through standardized protocols, resulting in spatial data that can be used to answer temporal questions, and allow new questions to be investigated. Results can also be integrated into existing biodiversity networks. Integrated systems are the most efficient way to save resources, maximize results, and accumulate information that can be used in the face of the unknown unknowns upon which our future depends.

Ex situ population of the Harpy Eagle and its potential for integrated conservation

A main priority in conservation is the protection of species in their natural habitat. However, ex situ management of threatened species is a recognised strategy of conservation. Harpy Eagles (Harpiaharpyja) are removed from the wild due to illegal capture, nest tree destruction, or other conflict sources. This study presents a review of the current ex situ Harpy Eagle populations in Brazil and worldwide, including information on the origin, sex, and year of entrance or year of birth under human care. Worldwide, until 2020 there were 205 Harpy Eagles in 77 different facilities in 16 countries, with 40 institutions in Brazil and 37 in other countries. The largest ex situ Harpy Eagle population is maintained in Brazil, with 139 individuals (75 females and 64 males) in 40 institutions. Of these institutions, there were 24 zoos, seven conservation breeding centres, six commercial breeders, two wildlife shelters, and one wildlife sorting centre. In Brazil, 62% (n = 86) of the individuals were hatched in the wild and 38% (n = 53) were bred in captivity under human care; for the wild individuals, only 73% (n = 64) have a known state of origin, with the majority from Pará state. This investigation provided relevant information to establish an ex situ demographic database. These individuals may potentially constitute a genetically and demographically viable safety population for future conservation strategies, as well as a source for research and education applied to Harpy Eagle integrated conservation.

Habitat use by two sympatric species of short-tailed opossums (Didelphidae: Monodelphis) in an area in eastern Amazonia

Two short-tailed opossum species, Monodelphis glirina and M. touan, occur in sympatry in an area of eastern Amazonia. Habitat structure and resource availability may influence habitat use and, consequently, species distribution, detectability, occupancy, and abundance. We evaluated occupancy and detectability of the species M. glirina and M. touan in the Carajás National Forest to answer the following questions: (1) Do both species occur in canga and forest habitats? (2) Do detectability and occupancy of M. touan and M. glirina differ in areas of canga and forest? (3) Does the presence of one species affect the detection of the other? We undertook surveys at 50 sampling sites (26 in canga and 24 in forest habitat). In addition, we developed co-occurrence models to test the relationships between occupancy and detection of M. touan in the presence or absence of M. glirina. We captured 693 individuals of M. glirina (587 in canga and 106 in forest) and 112 of M. touan (only one individual captured in canga). Occupancy by M. glirina was positively influenced by superficial rock cover and litter depth, while detectability was negatively influenced by canopy cover. Occupancy by M. touan was influenced positively by canopy cover, number of fallen trunks on the ground, and litter depth (Ψ = 0.315). Data from forest sites where M. touan and M. glirina occurred more often corroborated our third hypothesis, that detectability of M. touan is low when M. glirina is present. Our results highlight the existence of habitat preference by the two species of Monodelphis.

The Program for Biodiversity Research in Brazil: The role of regional networks for biodiversity knowledge, dissemination, and conservation

The Program for Biodiversity Research (PPBio) is an innovative program designed to integrate all biodiversity research stakeholders. Operating since 2004, it has installed long-term ecological research sites throughout Brazil and its logic has been applied in some other southern-hemisphere countries. The program supports all aspects of research necessary to understand biodiversity and the processes that affect it. There are presently 161 sampling sites (see some of them at Supplementary Appendix), most of which use a standardized methodology that allows comparisons across biomes and through time. To date, there are about 1200 publications associated with PPBio that cover topics ranging from natural history to genetics and species distributions. Most of the field data and metadata are available through PPBio web sites or DataONE. Metadata is available for researchers that intend to explore the different faces of Brazilian biodiversity spatio-temporal variation, as well as for managers intending to improve conservation strategies. The Program also fostered, directly and indirectly, local technical capacity building, and supported the training of hundreds of undergraduate and graduate students. The main challenge is maintaining the long-term funding necessary to understand biodiversity patterns and processes under pressure from global environmental changes.

NEOTROPICAL CARNIVORES: a data set on carnivore distribution in the Neotropics

Mammalian carnivores are considered a key group in maintaining ecological health and can indicate potential ecological integrity in landscapes where they occur. Carnivores also hold high conservation value and their habitat requirements can guide management and conservation plans. The order Carnivora has 84 species from 8 families in the Neotropical region: Canidae; Felidae; Mephitidae; Mustelidae; Otariidae; Phocidae; Procyonidae; and Ursidae. Herein, we include published and unpublished data on native terrestrial Neotropical carnivores (Canidae; Felidae; Mephitidae; Mustelidae; Procyonidae; and Ursidae). NEOTROPICAL CARNIVORES is a publicly available data set that includes 99,605 data entries from 35,511 unique georeferenced coordinates. Detection/non-detection and quantitative data were obtained from 1818 to 2018 by researchers, governmental agencies, non-governmental organizations, and private consultants. Data were collected using several methods including camera trapping, museum collections, roadkill, line transect, and opportunistic records. Literature (peer-reviewed and grey literature) from Portuguese, Spanish and English were incorporated in this compilation. Most of the data set consists of detection data entries (n = 79,343; 79.7%) but also includes non-detection data (n = 20,262; 20.3%). Of those, 43.3% also include count data (n = 43,151). The information available in NEOTROPICAL CARNIVORES will contribute to macroecological, ecological, and conservation questions in multiple spatio-temporal perspectives. As carnivores play key roles in trophic interactions, a better understanding of their distribution and habitat requirements are essential to establish conservation management plans and safeguard the future ecological health of Neotropical ecosystems. Our data paper, combined with other large-scale data sets, has great potential to clarify species distribution and related ecological processes within the Neotropics. There are no copyright restrictions and no restriction for using data from this data paper, as long as the data paper is cited as the source of the information used. We also request that users inform us of how they intend to use the data.

Positive roadside edge effects on artificial nest survival in a lowland Atlantic Forest

Road construction is considered to be one of the primary causes of forest fragmentation, and little is known about how roads affect bird reproductive success. The objective of this study was to assess the survival rate of artificial nests along an edge associated with a highway and in the interior of a tabuleiro forest. The study was performed at the Sooretama Biological Reserve, on the margins of federal highway BR-101, between September and October 2015. A total of 168 artificial nests with a Common quail (Coturnix coturnix) egg in each nest were placed along six sampling transects, at distances of 2, 25, 50, 100, 200, 400, and 800 m from the highway toward the forest interior. We used logistic regression and estimated daily survival rate (DSR) using the "Nest Survival" function in the program MARK to estimate artificial nest survival and assessed the effect of the distance from the highway. The artificial nest survival rate was significantly higher on the highway margins than at other distances. The results show that artificial nests located up to 25 m from the highway have a greater success probability (over 95%) and a significant decrease in success probability more than 50 m from the highway. Although we cannot rule out other nonroad-specific edge effects on artificial nest predation, our results suggest that the impacts of the highway (e.g., noise, vibration, visual stimuli) cause predators to avoid the road's surroundings (up to 25 m into the forest) when selecting their feeding sites, which partially supports the predation release hypothesis.

BRAZIL ROAD-KILL: a data set of wildlife terrestrial vertebrate road-kills

Mortality from collision with vehicles is the most visible impact of road traffic on wildlife. Mortality due to roads (hereafter road-kill) can affect the dynamic of populations of many species and can, therefore, increase the risk of local decline or extinction. This is especially true in Brazil, where plans for road network upgrading and expansion overlaps biodiversity hotspot areas, which are of high importance for global conservation. Researchers, conservationists and road planners face the challenge to define a national strategy for road mitigation and wildlife conservation. The main goal of this dataset is a compilation of geo-referenced road-kill data from published and unpublished road surveys. This is the first Data Paper in the BRAZIL series (see ATLANTIC, NEOTROPICAL, and BRAZIL collections of Data Papers published in Ecology), which aims make public road-kill data for species in the Brazilian Regions. The dataset encompasses road-kill records from 45 personal communications and 26 studies published in peer-reviewed journals, theses and reports. The road-kill dataset comprises 21,512 records, 83% of which are identified to the species level (n = 450 species). The dataset includes records of 31 amphibian species, 90 reptile species, 229 bird species, and 99 mammal species. One species is classified as Endangered, eight as Vulnerable and twelve as Near Threatened. The species with the highest number of records are: Didelphis albiventris (n = 1,549), Volatinia jacarina (n = 1,238), Cerdocyon thous (n = 1,135), Helicops infrataeniatus (n = 802), and Rhinella icterica (n = 692). Most of the records came from southern Brazil. However, observations of the road-kill incidence for non-Least Concern species are more spread across the country. This dataset can be used to identify which taxa seems to be vulnerable to traffic, analyze temporal and spatial patterns of road-kill at local, regional and national scales and also used to understand the effects of road-kill on population persistence. It may also contribute to studies that aims to understand the influence of landscape and environmental influences on road-kills, improve our knowledge on road-related strategies on biodiversity conservation and be used as complementary information on large-scale and macroecological studies. No copyright or proprietary restrictions are associated with the use of this data set other than citation of this Data Paper.

APLICAÇÃO DA TÉCNICA DO DNA BARCODING NA IDENTIFICAÇÃO DE ESPÉCIES DE MORCEGOS ATROPELADOS NA BR 101 NA RESERVA BIOLÓGICA DE SOORETAMA-ES

O DNA barcoding (código de barras de DNA) é uma técnica muito utilizada em estudos genéticos com animais que utiliza iniciadores universais para amplificar uma região específica do DNA mitocondrial. Esta técnica propicia a identificação de espécies que são encontradas muito danificadas, cuja identificação morfológica é praticamente impossível, principalmente de espécies de pequeno porte. O presente trabalho utilizou o DNA barcoding para a identificação de 33 amostras de espécies de morcegos atropeladas na Reserva Biológica de Sooretama-ES, uma região que tem um grande impacto, devido aos atropelamento causado pelo constante tráfego de carros que passam pela BR 101 que corta transversalmente a mesma. Para a identificação dos animais foi feita uma extração do DNA das amostras, e a subunidade I do gene COI do DNA mitocondrial foi amplificado por PCR, sendo em seguida sequenciado. Posteriormente, as amostras identificadas foram confrontadas no banco de dados BOLD. Foram selecionadas 33 amostras de DNA, e 27 dessas renderam sequenciamento adequado que permitiram a identificação dos animais, após o confronto das sequências de nucleotídeos geradas com o banco de dados BOLD. Deste modo, 17 espécies de morcegos foram identificadas.

GIS applied to location of fires detection towers in domain area of tropical forest

In most countries, the loss of biodiversity caused by the fires is worrying. In this sense, the fires detection towers are crucial for rapid identification of fire outbreaks and can also be used in environmental inspection, biodiversity monitoring, telecommunications mechanisms, telemetry and others. Currently the methodologies for allocating fire detection towers over large areas are numerous, complex and non-standardized by government supervisory agencies. Therefore, this study proposes and evaluates different methodologies to best location of points to install fire detection towers considering the topography, risk areas, conservation units and heat spots. Were used Geographic Information Systems (GIS) techniques and unaligned stratified systematic sampling for implementing and evaluating 9 methods for allocating fire detection towers. Among the methods evaluated, the C3 method was chosen, represented by 140 fire detection towers, with coverage of: a) 67% of the study area, b) 73.97% of the areas with high risk, c) 70.41% of the areas with very high risk, d) 70.42% of the conservation units and e) 84.95% of the heat spots in 2014. The proposed methodology can be adapted to areas of other countries.

Reduction of Genetic Diversity of the Harpy Eagle in Brazilian Tropical Forests

Habitat loss and fragmentation intensify the effects of genetic drift and endogamy, reducing genetic variability of populations with serious consequences for wildlife conservation. The Harpy Eagle (Harpia harpyja) is a forest dwelling species that is considered near threatened and suffers from habitat loss in the forests of the Neotropical region. In this study, 72 historical and current samples were assessed using eight autosomal microsatellite markers to investigate the distribution of genetic diversity of the Harpy Eagle of the Amazonian and Atlantic forests in Brazil. The results showed that the genetic diversity of Harpy Eagle decreased in the regions where deforestation is intense in the southern Amazon and Atlantic Forest.

Using DNA Barcodes to Identify Road-Killed Animals in Two Atlantic Forest Nature Reserves, Brazil

Road mortality is the leading source of biodiversity loss in the world, especially due to fragmentation of natural habitats and loss of wildlife. The survey of the main species victims of roadkill is of fundamental importance for the better understanding of the problem, being necessary, for this, the correct species identification. The aim of this study was to verify if DNA barcodes can be applied to identify road-killed samples that often cannot be determined morphologically. For this purpose, 222 vertebrate samples were collected in a stretch of the BR-101 highway that crosses two Discovery Coast Atlantic Forest Natural Reserves, the Sooretama Biological Reserve and the Vale Natural Reserve, in Espírito Santo, Brazil. The mitochondrial COI gene was amplified, sequenced and confronted with the BOLD database. It was possible to identify 62.16% of samples, totaling 62 different species, including Pyrrhura cruentata, Chaetomys subspinosus, Puma yagouaroundi and Leopardus wiedii considered Vulnerable in the National Official List of Species of Endangered Wildlife. The most commonly identified animals were a bat (Molossus molossus), an opossum (Didelphis aurita) and a frog (Trachycephalus mesophaeus) species. Only one reptile was identified using the technique, probably due to lack of reference sequences in BOLD. These data may contribute to a better understanding of the impact of roads on species biodiversity loss and to introduce the DNA barcode technique to road ecology scenarios.