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Timm S, Klaas N, Niemann J, Jahnke K, Alseekh S, Zhang Y, Souza PVL, Hou LY, Cosse M, Selinski J, Geigenberger P, Daloso DM, Fernie AR, Hagemann M. Thioredoxins o1 and h2 jointly adjust mitochondrial dihydrolipoamide dehydrogenase-dependent pathways towards changing environments. Plant Cell Environ 2024. [PMID: 38518065 DOI: 10.1111/pce.14899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2023] [Revised: 03/11/2024] [Accepted: 03/13/2024] [Indexed: 03/24/2024]
Abstract
Thioredoxins (TRXs) are central to redox regulation, modulating enzyme activities to adapt metabolism to environmental changes. Previous research emphasized mitochondrial and microsomal TRX o1 and h2 influence on mitochondrial metabolism, including photorespiration and the tricarboxylic acid (TCA) cycle. Our study aimed to compare TRX-based regulation circuits towards environmental cues mainly affecting photorespiration. Metabolite snapshots, phenotypes and CO2 assimilation were compared among single and multiple TRX mutants in the wild-type and the glycine decarboxylase T-protein knockdown (gldt1) background. Our analyses provided evidence for additive negative effects of combined TRX o1 and h2 deficiency on growth and photosynthesis. Especially metabolite accumulation patterns suggest a shared regulation mechanism mainly on mitochondrial dihydrolipoamide dehydrogenase (mtLPD1)-dependent pathways. Quantification of pyridine nucleotides, in conjunction with 13C-labelling approaches, and biochemical analysis of recombinant mtLPD1 supported this. It also revealed mtLPD1 inhibition by NADH, pointing at an additional measure to fine-tune it's activity. Collectively, we propose that lack of TRX o1 and h2 perturbs the mitochondrial redox state, which impacts on other pathways through shifts in the NADH/NAD+ ratio via mtLPD1. This regulation module might represent a node for simultaneous adjustments of photorespiration, the TCA cycle and branched chain amino acid degradation under fluctuating environmental conditions.
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Affiliation(s)
- Stefan Timm
- Plant Physiology Department, University of Rostock, Rostock, Germany
| | - Nicole Klaas
- Plant Physiology Department, University of Rostock, Rostock, Germany
| | - Janice Niemann
- Plant Physiology Department, University of Rostock, Rostock, Germany
| | - Kathrin Jahnke
- Plant Physiology Department, University of Rostock, Rostock, Germany
| | - Saleh Alseekh
- Max Planck Institute of Molecular Plant Physiology, Golm, Germany
| | - Youjun Zhang
- Max Planck Institute of Molecular Plant Physiology, Golm, Germany
- Center of Plant System Biology and Biotechnology, Plovdiv, Bulgaria
| | - Paulo V L Souza
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, Brazil
| | - Liang-Yu Hou
- Department Biology I, Ludwig-Maximilians-University Munich, Planegg-Martinsried, Germany
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan
| | - Maike Cosse
- Department of Plant Cell Biology, Botanical Institute, Christian-Albrechts University Kiel, Kiel, Germany
| | - Jennifer Selinski
- Department of Plant Cell Biology, Botanical Institute, Christian-Albrechts University Kiel, Kiel, Germany
| | - Peter Geigenberger
- Department Biology I, Ludwig-Maximilians-University Munich, Planegg-Martinsried, Germany
| | - Danilo M Daloso
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, Brazil
| | - Alisdair R Fernie
- Max Planck Institute of Molecular Plant Physiology, Golm, Germany
- Center of Plant System Biology and Biotechnology, Plovdiv, Bulgaria
| | - Martin Hagemann
- Plant Physiology Department, University of Rostock, Rostock, Germany
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Sousa RH, Carvalho FE, Daloso DM, Lima-Melo Y, Margis-Pinheiro M, Komatsu S, Silveira JA. Impairment in photosynthesis induced by CAT inhibition depends on the intensity of photorespiration and peroxisomal APX expression in rice. Plant Physiol Biochem 2023; 203:108066. [PMID: 37797384 DOI: 10.1016/j.plaphy.2023.108066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Revised: 09/12/2023] [Accepted: 09/28/2023] [Indexed: 10/07/2023]
Abstract
We have previously shown that rice plants silenced for peroxisomal ascorbate peroxidase (OsAPX4-RNAi) display higher resilience to photosynthesis under oxidative stress and photorespiratory conditions. However, the redox mechanisms underlying that intriguing response remain unknown. Here, we tested the hypothesis that favorable effects triggered by peroxisomal APX deficiency on photosynthesis resilience under CAT inhibition are dependent on the intensity of photorespiration associated with the abundance of photosynthetic and redox proteins. Non-transformed (NT) and OsAPX4-RNAi silenced rice plants were grown under ambient (AC) or high CO2 (HC) conditions and subjected to 3-amino-1,2,4-triazole (3-AT)-mediated CAT activity inhibition. Photosynthetic measurements evidenced that OsAPX4-RNAi plants simultaneously exposed to CAT inhibition and HC lost the previously acquired advantage in photosynthesis resilience displayed under AC. Silenced plants exposed to environment photorespiration and CAT inhibition presented lower photorespiration as indicated by smaller Gly/Ser and Jo/Jc ratios and glycolate oxidase activity. Interestingly, when these silenced plants were exposed to HC and CAT-inhibition, they exhibited an inverse response compared to AC in terms of photorespiration indicators, associated with higher accumulation of proteins. Multivariate and correlation network analyses suggest that the proteomics changes induced by HC combined with CAT inhibition are substantially different between NT and OsAPX4-RNAi plants. Our results suggest that the intensity of photorespiration and peroxisomal APX-mediated redox signaling are tightly regulated under CAT inhibition induced oxidative stress, which can modulate the photosynthetic efficiency, possibly via a coordinated regulation of protein abundance and rearrangement, ultimately triggered by crosstalk involving H2O2 levels related to CAT and APX activities in peroxisomes.
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Affiliation(s)
- Rachel Hv Sousa
- Center of Agricultural Sciences and Biodiversity, Federal University of Cariri, Brazil
| | - Fabricio El Carvalho
- Colombian Corporation for Agricultural Research (AGROSAVIA), CI La Suiza, Rionegro, Colombia
| | - Danilo M Daloso
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Fortaleza, Ceará, Brazil
| | - Yugo Lima-Melo
- Department of Botany, Federal University of Rio Grande Do Sul, Porto Alegre, Rio Grande do Sul, Brazil
| | - Marcia Margis-Pinheiro
- Department of Genetics, Federal University of Rio Grande Do Sul, Porto Alegre, Rio Grande do Sul, Brazil
| | - Setsuko Komatsu
- Faculty of Environmental and Information Sciences, Fukui University of Technology, Fukui, Japan
| | - Joaquim Ag Silveira
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Fortaleza, Ceará, Brazil.
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Lima VF, Freire FBS, Cândido-Sobrinho SA, Porto NP, Medeiros DB, Erban A, Kopka J, Schwarzländer M, Fernie AR, Daloso DM. Unveiling the dark side of guard cell metabolism. Plant Physiol Biochem 2023; 201:107862. [PMID: 37413941 DOI: 10.1016/j.plaphy.2023.107862] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Revised: 06/02/2023] [Accepted: 06/22/2023] [Indexed: 07/08/2023]
Abstract
Evidence suggests that guard cells have higher rate of phosphoenolpyruvate carboxylase (PEPc)-mediated dark CO2 assimilation than mesophyll cells. However, it is unknown which metabolic pathways are activated following dark CO2 assimilation in guard cells. Furthermore, it remains unclear how the metabolic fluxes throughout the tricarboxylic acid (TCA) cycle and associated pathways are regulated in illuminated guard cells. Here we carried out a13C-HCO3 labelling experiment in tobacco guard cells harvested under continuous dark or during the dark-to-light transition to elucidate principles of metabolic dynamics downstream of CO2 assimilation. Most metabolic changes were similar between dark-exposed and illuminated guard cells. However, illumination altered the metabolic network structure of guard cells and increased the 13C-enrichment in sugars and metabolites associated to the TCA cycle. Sucrose was labelled in the dark, but light exposure increased the 13C-labelling and leads to more drastic reductions in the content of this metabolite. Fumarate was strongly labelled under both dark and light conditions, while illumination increased the 13C-enrichment in pyruvate, succinate and glutamate. Only one 13C was incorporated into malate and citrate in either dark or light conditions. Our results indicate that several metabolic pathways are redirected following PEPc-mediated CO2 assimilation in the dark, including gluconeogenesis and the TCA cycle. We further showed that the PEPc-mediated CO2 assimilation provides carbons for gluconeogenesis, the TCA cycle and glutamate synthesis and that previously stored malate and citrate are used to underpin the specific metabolic requirements of illuminated guard cells.
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Affiliation(s)
- Valéria F Lima
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, 60451-970, Fortaleza, Ceará, Brazil
| | - Francisco Bruno S Freire
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, 60451-970, Fortaleza, Ceará, Brazil
| | - Silvio A Cândido-Sobrinho
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, 60451-970, Fortaleza, Ceará, Brazil
| | - Nicole P Porto
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, 60451-970, Fortaleza, Ceará, Brazil
| | - David B Medeiros
- Max-Planck-Institute of Molecular Plant Physiology, 14476, Potsdam-Golm, Germany
| | - Alexander Erban
- Max-Planck-Institute of Molecular Plant Physiology, 14476, Potsdam-Golm, Germany
| | - Joachim Kopka
- Max-Planck-Institute of Molecular Plant Physiology, 14476, Potsdam-Golm, Germany
| | - Markus Schwarzländer
- Institute of Plant Biology and Biotechnology, Westfälische-Wilhelms-Universität Münster, D-48143, Münster, Germany
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, 14476, Potsdam-Golm, Germany
| | - Danilo M Daloso
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, 60451-970, Fortaleza, Ceará, Brazil.
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Souza PVL, Hou LY, Sun H, Poeker L, Lehman M, Bahadar H, Domingues-Junior AP, Dard A, Bariat L, Reichheld JP, Silveira JAG, Fernie AR, Timm S, Geigenberger P, Daloso DM. Plant NADPH-dependent thioredoxin reductases are crucial for the metabolism of sink leaves and plant acclimation to elevated CO 2. Plant Cell Environ 2023. [PMID: 37267089 DOI: 10.1111/pce.14631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Revised: 05/05/2023] [Accepted: 05/13/2023] [Indexed: 06/04/2023]
Abstract
Plants contain three NADPH-thioredoxin reductases (NTR) located in the cytosol/mitochondria (NTRA/B) and the plastid (NTRC) with important metabolic functions. However, mutants deficient in all NTRs remained to be investigated. Here, we generated and characterised the triple Arabidopsis ntrabc mutant alongside with ntrc single and ntrab double mutants under different environmental conditions. Both ntrc and ntrabc mutants showed reduced growth and substantial metabolic alterations, especially in sink leaves and under high CO2 (HC), as compared to the wild type. However, ntrabc showed higher effective quantum yield of PSII under both constant and fluctuating light conditions, altered redox states of NADH/NAD+ and glutathione (GSH/GSSG) and lower potential quantum yield of PSII in sink leaves in ambient but not high CO2 concentrations, as compared to ntrc, suggesting a functional interaction between chloroplastic and extra-chloroplastic NTRs in photosynthesis regulation depending on leaf development and environmental conditions. Our results unveil a previously unknown role of the NTR system in regulating sink leaf metabolism and plant acclimation to HC, while it is not affecting full plant development, indicating that the lack of the NTR system can be compensated, at least to some extent, by other redox mechanisms.
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Affiliation(s)
- Paulo V L Souza
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, Brazil
| | - Liang-Yu Hou
- Ludwig-Maximilians-University Munich, Planegg-Martinsried, Germany
| | - Hu Sun
- University of Rostock, Rostock, Germany
| | - Louis Poeker
- Ludwig-Maximilians-University Munich, Planegg-Martinsried, Germany
| | - Martin Lehman
- Ludwig-Maximilians-University Munich, Planegg-Martinsried, Germany
| | - Humaira Bahadar
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, Brazil
| | | | - Avilien Dard
- Laboratoire Génome et Développement des Plantes, Unité Mixte de Recherche 5096, Centre National de la Recherche Scientifique, Université de Perpignan Via Domitia, Perpignan, France
| | - Laetitia Bariat
- Laboratoire Génome et Développement des Plantes, Unité Mixte de Recherche 5096, Centre National de la Recherche Scientifique, Université de Perpignan Via Domitia, Perpignan, France
| | - Jean-Philippe Reichheld
- Laboratoire Génome et Développement des Plantes, Unité Mixte de Recherche 5096, Centre National de la Recherche Scientifique, Université de Perpignan Via Domitia, Perpignan, France
| | | | | | | | | | - Danilo M Daloso
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, Brazil
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Porto NP, Bret RSC, Souza PVL, Cândido-Sobrinho SA, Medeiros DB, Fernie AR, Daloso DM. Thioredoxins regulate the metabolic fluxes throughout the tricarboxylic acid cycle and associated pathways in a light-independent manner. Plant Physiol Biochem 2022; 193:36-49. [PMID: 36323196 DOI: 10.1016/j.plaphy.2022.10.022] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Revised: 10/11/2022] [Accepted: 10/19/2022] [Indexed: 06/16/2023]
Abstract
The metabolic fluxes throughout the tricarboxylic acid cycle (TCAC) are inhibited in the light by the mitochondrial thioredoxin (TRX) system. However, it is unclear how this system orchestrates the fluxes throughout the TCAC and associated pathways in the dark. Here we carried out a13C-HCO3 labelling experiment in Arabidopsis leaves from wild type (WT) and mutants lacking TRX o1 (trxo1), TRX h2 (trxh2), or both NADPH-dependent TRX reductase A and B (ntra ntrb) exposed to 0, 30 and 60 min of dark or light conditions. No 13C-enrichment in TCAC metabolites in illuminated WT leaves was observed. However, increased succinate content was found in parallel to reductions in Ala in the light, suggesting the latter operates as an alternative carbon source for succinate synthesis. By contrast to WT, all mutants showed substantial changes in the content and 13C-enrichment in TCAC metabolites under both dark and light conditions. Increased 13C-enrichment in glutamine in illuminated trxo1 leaves was also observed, strengthening the idea that TRX o1 restricts in vivo carbon fluxes from glycolysis and the TCAC to glutamine. We further demonstrated that both photosynthetic and gluconeogenic fluxes toward glucose are increased in trxo1 and that the phosphoenolpyruvate carboxylase (PEPc)-mediated 13C-incorporation into malate is higher in trxh2 mutants, as compared to WT. Our results collectively provide evidence that TRX h2 and the mitochondrial NTR/TRX system regulate the metabolic fluxes throughout the TCAC and associated pathways, including glycolysis, gluconeogenesis and the synthesis of glutamine in a light-independent manner.
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Affiliation(s)
- Nicole P Porto
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, 60451-970, Fortaleza, Ceará, Brazil
| | - Raissa S C Bret
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, 60451-970, Fortaleza, Ceará, Brazil
| | - Paulo V L Souza
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, 60451-970, Fortaleza, Ceará, Brazil
| | - Silvio A Cândido-Sobrinho
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, 60451-970, Fortaleza, Ceará, Brazil
| | - David B Medeiros
- Max-Planck-Institute of Molecular Plant Physiology, 14476, Potsdam-Golm, Germany
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, 14476, Potsdam-Golm, Germany
| | - Danilo M Daloso
- LabPlant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, 60451-970, Fortaleza, Ceará, Brazil.
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da Fonseca-Pereira P, Souza PVL, Fernie AR, Timm S, Daloso DM, Araújo WL. Corrigendum to: Thioredoxin-mediated regulation of (photo)respiration and central metabolism. J Exp Bot 2022; 73:1683. [PMID: 34878538 DOI: 10.1093/jxb/erab446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Affiliation(s)
- Paula da Fonseca-Pereira
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - Paulo V L Souza
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, 60451-970, Fortaleza, Ceará, Brazil
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, D-14476 Potsdam-Golm, Germany
| | - Stefan Timm
- University of Rostock, Plant Physiology Department, Albert-Einstein-Str. 3, D-18051 Rostock, Germany
| | - Danilo M Daloso
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, 60451-970, Fortaleza, Ceará, Brazil
| | - Wagner L Araújo
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
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Cândido-Sobrinho SA, Lima VF, Freire FBS, de Souza LP, Gago J, Fernie AR, Daloso DM. Metabolism-mediated mechanisms underpin the differential stomatal speediness regulation among ferns and angiosperms. Plant Cell Environ 2022; 45:296-311. [PMID: 34800300 DOI: 10.1111/pce.14232] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2021] [Revised: 11/12/2021] [Accepted: 11/14/2021] [Indexed: 06/13/2023]
Abstract
Recent results suggest that metabolism-mediated stomatal closure mechanisms are important to regulate differentially the stomatal speediness between ferns and angiosperms. However, evidence directly linking mesophyll metabolism and the slower stomatal conductance (gs ) in ferns is missing. Here, we investigated the effect of exogenous application of abscisic acid (ABA), sucrose and mannitol on stomatal kinetics and carried out a metabolic fingerprinting analysis of ferns and angiosperms leaves harvested throughout a diel course. Fern stomata did not respond to ABA in the time period analysed. No differences in the relative decrease in gs was observed between ferns and the angiosperm following provision of sucrose or mannitol. However, ferns have slower gs responses to these compounds than angiosperms. Metabolomics analysis highlights that ferns have a higher accumulation of secondary rather than primary metabolites throughout the diel course, with the opposite being observed in angiosperms. Our results indicate that metabolism-mediated stomatal closure mechanisms underpin the differential stomatal speediness regulation among ferns and angiosperms, in which the slower stomatal closure in ferns is associated with the lack of ABA-responsiveness, to a reduced capacity to respond to mesophyll-derived sucrose and to a higher carbon allocation toward secondary metabolism, which likely modulates both photosynthesis-gs and growth-stress tolerance trade-offs.
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Affiliation(s)
- Silvio A Cândido-Sobrinho
- Departamento de Bioquímica e Biologia Molecular, LabPlant, Universidade Federal do Ceará, Fortaleza-CE, Brasil
| | - Valéria F Lima
- Departamento de Bioquímica e Biologia Molecular, LabPlant, Universidade Federal do Ceará, Fortaleza-CE, Brasil
| | - Francisco B S Freire
- Departamento de Bioquímica e Biologia Molecular, LabPlant, Universidade Federal do Ceará, Fortaleza-CE, Brasil
| | - Leonardo P de Souza
- Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Jorge Gago
- Research Group On Plant Biology Under Mediterranean Conditions, Instituto de investigaciones Agroambientales y de la Economía del Agua (INAGEA), Universitat de les Illes Balears, Palma de Mallorca, Spain
| | - Alisdair R Fernie
- Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Danilo M Daloso
- Departamento de Bioquímica e Biologia Molecular, LabPlant, Universidade Federal do Ceará, Fortaleza-CE, Brasil
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Lima VF, Erban A, Daubermann AG, Freire FBS, Porto NP, Cândido-Sobrinho SA, Medeiros DB, Schwarzländer M, Fernie AR, Dos Anjos L, Kopka J, Daloso DM. Establishment of a GC-MS-based 13 C-positional isotopomer approach suitable for investigating metabolic fluxes in plant primary metabolism. Plant J 2021; 108:1213-1233. [PMID: 34486764 DOI: 10.1111/tpj.15484] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Revised: 08/20/2021] [Accepted: 08/30/2021] [Indexed: 06/13/2023]
Abstract
13 C-Metabolic flux analysis (13 C-MFA) has greatly contributed to our understanding of plant metabolic regulation. However, the generation of detailed in vivo flux maps remains a major challenge. Flux investigations based on nuclear magnetic resonance have resolved small networks with high accuracy. Mass spectrometry (MS) approaches have broader potential, but have hitherto been limited in their power to deduce flux information due to lack of atomic level position information. Herein we established a gas chromatography (GC) coupled to MS-based approach that provides 13 C-positional labelling information in glucose, malate and glutamate (Glu). A map of electron impact (EI)-mediated MS fragmentation was created and validated by 13 C-positionally labelled references via GC-EI-MS and GC-atmospheric pressure chemical ionization-MS technologies. The power of the approach was revealed by analysing previous 13 C-MFA data from leaves and guard cells, and 13 C-HCO3 labelling of guard cells harvested in the dark and after the dark-to-light transition. We demonstrated that the approach is applicable to established GC-EI-MS-based 13 C-MFA without the need for experimental adjustment, but will benefit in the future from paired analyses by the two GC-MS platforms. We identified specific glucose carbon atoms that are preferentially labelled by photosynthesis and gluconeogenesis, and provide an approach to investigate the phosphoenolpyruvate carboxylase (PEPc)-derived 13 C-incorporation into malate and Glu. Our results suggest that gluconeogenesis and the PEPc-mediated CO2 assimilation into malate are activated in a light-independent manner in guard cells. We further highlight that the fluxes from glycolysis and PEPc toward Glu are restricted by the mitochondrial thioredoxin system in illuminated leaves.
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Affiliation(s)
- Valéria F Lima
- LabPLant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza-CE, 60451-970, Brazil
| | - Alexander Erban
- Max-Planck-Institute of Molecular Plant Physiology, Potsdam-Golm, D-14476, Germany
| | - André G Daubermann
- Departamento de Biologia, Setor de Fisiologia Vegetal, Universidade Federal de Lavras, Lavras-MG, 37200-900, Brazil
| | - Francisco Bruno S Freire
- LabPLant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza-CE, 60451-970, Brazil
| | - Nicole P Porto
- LabPLant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza-CE, 60451-970, Brazil
| | - Silvio A Cândido-Sobrinho
- LabPLant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza-CE, 60451-970, Brazil
| | - David B Medeiros
- Max-Planck-Institute of Molecular Plant Physiology, Potsdam-Golm, D-14476, Germany
| | - Markus Schwarzländer
- Institute of Plant Biology and Biotechnology, Westfälische-Wilhelms-Universität Münster, Münster, D-48143, Germany
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, Potsdam-Golm, D-14476, Germany
| | - Leticia Dos Anjos
- Departamento de Biologia, Setor de Fisiologia Vegetal, Universidade Federal de Lavras, Lavras-MG, 37200-900, Brazil
| | - Joachim Kopka
- Max-Planck-Institute of Molecular Plant Physiology, Potsdam-Golm, D-14476, Germany
| | - Danilo M Daloso
- LabPLant, Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza-CE, 60451-970, Brazil
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da Fonseca-Pereira P, Souza PVL, Fernie AR, Timm S, Daloso DM, Araújo WL. Thioredoxin-mediated regulation of (photo)respiration and central metabolism. J Exp Bot 2021; 72:5987-6002. [PMID: 33649770 DOI: 10.1093/jxb/erab098] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Accepted: 02/24/2021] [Indexed: 06/12/2023]
Abstract
Thioredoxins (TRXs) are ubiquitous proteins engaged in the redox regulation of plant metabolism. Whilst the light-dependent TRX-mediated activation of Calvin-Benson cycle enzymes is well documented, the role of extraplastidial TRXs in the control of the mitochondrial (photo)respiratory metabolism has been revealed relatively recently. Mitochondrially located TRX o1 has been identified as a regulator of alternative oxidase, enzymes of, or associated with, the tricarboxylic acid (TCA) cycle, and the mitochondrial dihydrolipoamide dehydrogenase (mtLPD) involved in photorespiration, the TCA cycle, and the degradation of branched chain amino acids. TRXs are seemingly a major point of metabolic regulation responsible for activating photosynthesis and adjusting mitochondrial photorespiratory metabolism according to the prevailing cellular redox status. Furthermore, TRX-mediated (de)activation of TCA cycle enzymes contributes to explain the non-cyclic flux mode of operation of this cycle in illuminated leaves. Here we provide an overview on the decisive role of TRXs in the coordination of mitochondrial metabolism in the light and provide in silico evidence for other redox-regulated photorespiratory enzymes. We further discuss the consequences of mtLPD regulation beyond photorespiration and provide outstanding questions that should be addressed in future studies to improve our understanding of the role of TRXs in the regulation of central metabolism.
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Affiliation(s)
| | - Paulo V L Souza
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, Ceará, Brazil
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Stefan Timm
- University of Rostock, Plant Physiology Department, Albert- Einstein-Str. 3, Rostock, Germany
| | - Danilo M Daloso
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, Ceará, Brazil
| | - Wagner L Araújo
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
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10
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Zhang Y, Giese J, Kerbler SM, Siemiatkowska B, Perez de Souza L, Alpers J, Medeiros DB, Hincha DK, Daloso DM, Stitt M, Finkemeier I, Fernie AR. Two mitochondrial phosphatases, PP2c63 and Sal2, are required for posttranslational regulation of the TCA cycle in Arabidopsis. Mol Plant 2021; 14:1104-1118. [PMID: 33798747 DOI: 10.1016/j.molp.2021.03.023] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Revised: 01/26/2021] [Accepted: 03/29/2021] [Indexed: 05/22/2023]
Abstract
Protein phosphorylation is a well-established post-translational mechanism that regulates protein functions and metabolic pathways. It is known that several plant mitochondrial proteins are phosphorylated in a reversible manner. However, the identities of the protein kinases/phosphatases involved in this mechanism and their roles in the regulation of the tricarboxylic acid (TCA) cycle remain unclear. In this study, we isolated and characterized plants lacking two mitochondrially targeted phosphatases (Sal2 and PP2c63) along with pyruvate dehydrogenase kinase (PDK). Protein-protein interaction analysis, quantitative phosphoproteomics, and enzymatic analyses revealed that PDK specifically regulates pyruvate dehydrogenase complex (PDC), while PP2c63 nonspecifically regulates PDC. When recombinant PP2c63 and Sal2 proteins were added to mitochondria isolated from mutant plants, protein-protein interaction and enzymatic analyses showed that PP2c63 directly phosphorylates and modulates the activity of PDC, while Sal2 only indirectly affects TCA cycle enzymes. Characterization of steady-state metabolite levels and fluxes in the mutant lines further revealed that these phosphatases regulate flux through the TCA cycle, and that altered metabolism in the sal2 pp2c63 double mutant compromises plant growth. These results are discussed in the context of current models of the control of respiration in plants.
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Affiliation(s)
- Youjun Zhang
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany; Center of Plant Systems Biology and Biotechnology, 4000 Plovdiv, Bulgaria.
| | - Jonas Giese
- Institute of Plant Biology and Biotechnology, University of Muenster, Schlossplatz 7, 48149 Muenster, Germany
| | - Sandra M Kerbler
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
| | - Beata Siemiatkowska
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
| | - Leonardo Perez de Souza
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
| | - Jessica Alpers
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
| | - David Barbosa Medeiros
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
| | - Dirk K Hincha
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
| | - Danilo M Daloso
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, Ceará, Brasil
| | - Mark Stitt
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
| | - Iris Finkemeier
- Institute of Plant Biology and Biotechnology, University of Muenster, Schlossplatz 7, 48149 Muenster, Germany.
| | - Alisdair R Fernie
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany; Center of Plant Systems Biology and Biotechnology, 4000 Plovdiv, Bulgaria.
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11
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da Fonseca-Pereira P, Souza PVL, Hou LY, Schwab S, Geigenberger P, Nunes-Nesi A, Timm S, Fernie AR, Thormählen I, Araújo WL, Daloso DM. Thioredoxin h2 contributes to the redox regulation of mitochondrial photorespiratory metabolism. Plant Cell Environ 2020; 43:188-208. [PMID: 31378951 DOI: 10.1111/pce.13640] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2018] [Revised: 07/24/2019] [Accepted: 07/31/2019] [Indexed: 05/18/2023]
Abstract
Thioredoxins (TRXs) are important proteins involved in redox regulation of metabolism. In plants, it has been shown that the mitochondrial metabolism is regulated by the mitochondrial TRX system. However, the functional significance of TRX h2, which is found at both cytosol and mitochondria, remains unclear. Arabidopsis plants lacking TRX h2 showed delayed seed germination and reduced respiration alongside impaired stomatal and mesophyll conductance, without impacting photosynthesis under ambient O2 conditions. However, an increase in the stoichiometry of photorespiratory CO2 release was found during O2 -dependent gas exchange measurements in trxh2 mutants. Metabolite profiling of trxh2 leaves revealed alterations in key metabolites of photorespiration and in several metabolites involved in respiration and amino acid metabolism. Decreased abundance of serine hydroxymethyltransferase and glycine decarboxylase (GDC) H and L subunits as well as reduced NADH/NAD+ ratios were also observed in trxh2 mutants. We further demonstrated that the redox status of GDC-L is altered in trxh2 mutants in vivo and that recombinant TRX h2 can deactivate GDC-L in vitro, indicating that this protein is redox regulated by the TRX system. Collectively, our results demonstrate that TRX h2 plays an important role in the redox regulation of mitochondrial photorespiratory metabolism.
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Affiliation(s)
- Paula da Fonseca-Pereira
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, 36570-900, Brazil
| | - Paulo V L Souza
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, 60451-970, Brazil
| | - Liang-Yu Hou
- Department Biology I, Ludwig-Maximilians-Universität München, Planegg-Martinsried, 82152, Germany
| | - Saskia Schwab
- Plant Physiology Department, University of Rostock, Rostock, D-18051, Germany
| | - Peter Geigenberger
- Department Biology I, Ludwig-Maximilians-Universität München, Planegg-Martinsried, 82152, Germany
| | - Adriano Nunes-Nesi
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, 36570-900, Brazil
| | - Stefan Timm
- Plant Physiology Department, University of Rostock, Rostock, D-18051, Germany
| | - Alisdair R Fernie
- Department Willmitzer, Max-Planck-Institute of Molecular Plant Physiology, Potsdam-Golm, 14476, Germany
| | - Ina Thormählen
- Department Biology I, Ludwig-Maximilians-Universität München, Planegg-Martinsried, 82152, Germany
| | - Wagner L Araújo
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, 36570-900, Brazil
| | - Danilo M Daloso
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, 60451-970, Brazil
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12
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Lima VF, Anjos LD, Medeiros DB, Cândido-Sobrinho SA, Souza LP, Gago J, Fernie AR, Daloso DM. The sucrose-to-malate ratio correlates with the faster CO 2 and light stomatal responses of angiosperms compared to ferns. New Phytol 2019; 223:1873-1887. [PMID: 31099898 DOI: 10.1111/nph.15927] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Accepted: 05/13/2019] [Indexed: 05/24/2023]
Abstract
Stomatal responses to environmental signals differ substantially between ferns and angiosperms. However, the mechanisms that lead to such different responses remain unclear. Here we investigated the extent to which leaf metabolism contributes to coordinate the differential stomatal behaviour among ferns and angiosperms. Stomata from all species were responsive to light and CO2 transitions. However, fern stomatal responses were slower and minor in both absolute and relative terms. Angiosperms have higher stomatal density, but this is not correlated with speed of stomatal closure. The metabolic responses throughout the diel course and under different CO2 conditions differ substantially among ferns and angiosperms. Higher sucrose content and an increased sucrose-to-malate ratio during high CO2 -induced stomatal closure was observed in angiosperms compared to ferns. Furthermore, the speed of stomatal closure was positively and negatively correlated with sugars and organic acids, respectively, suggesting that the balance between sugars and organic acids aids in explaining the faster stomatal responses of angiosperms. Our results suggest that mesophyll-derived metabolic signals, especially those associated with sucrose and malate, may also be important to modulate the differential stomatal behaviour between ferns and angiosperms, providing important new information that helps in understanding the metabolism-mediated mechanisms regulating stomatal movements across land plant evolution.
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Affiliation(s)
- Valéria F Lima
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza-CE, 60451-970, Brasil
| | - Letícia Dos Anjos
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza-CE, 60451-970, Brasil
- Departamento de Biologia, Setor de Fisiologia Vegetal, Universidade Federal de Lavras, Lavras-MG, 37200-000, Brasil
| | - David B Medeiros
- Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, 14476, Germany
| | - Silvio A Cândido-Sobrinho
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza-CE, 60451-970, Brasil
| | - Leonardo P Souza
- Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, 14476, Germany
| | - Jorge Gago
- Grupo de Biología de las Plantas en Condiciones Mediterráneas, Departamento de Biología, Universidad de las Islas Baleares/Instituto de investigaciones Agroambientales y de la Economía del Agua (INAGEA), Palma de Mallorca, 07122, Islas Baleares, España
| | - Alisdair R Fernie
- Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, 14476, Germany
| | - Danilo M Daloso
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza-CE, 60451-970, Brasil
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13
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Da Fonseca-Pereira P, Daloso DM, Gago J, Nunes-Nesi A, Araújo WL. On the role of the plant mitochondrial thioredoxin system during abiotic stress. Plant Signal Behav 2019; 14:1592536. [PMID: 30885041 PMCID: PMC6546141 DOI: 10.1080/15592324.2019.1592536] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Revised: 02/28/2019] [Accepted: 03/02/2019] [Indexed: 05/26/2023]
Abstract
Thiol-disulfide redox exchanges are widely distributed modifications of great importance for metabolic regulation in living cells. In general, the formation of disulfide bonds is controlled by thioredoxins (TRXs), ubiquitous proteins with two redox-active cysteine residues separated by a pair of amino acids. While the function of plastidial TRXs has been extensively studied, the role of the mitochondrial TRX system is much less well understood. Recent studies have demonstrated that the mitochondrial TRXs are required for the proper functioning of the major metabolic pathways, including stomatal function and antioxidant metabolism under sub-optimal conditions including drought and salinity. Furthermore, inactivation of mitochondrial TRX system leads to metabolite adjustments of both primary and secondary metabolism following drought episodes in arabidopsis, and makes the plants more resistant to salt stress. Here we discuss the implications of these findings, which clearly open up several research avenues to achieve a full understanding of the redox control of metabolism under environmental constraining conditions.
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Affiliation(s)
- Paula Da Fonseca-Pereira
- Max-Planck Partner Group, Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Danilo M. Daloso
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, Ceará, Brasil
| | - Jorge Gago
- Research Group on Plant Biology under Mediterranean conditions, Departament de Biologia, University of the Balearic Islands, Universitat de les Illes Balears/Institute of Agro-Environmental and Water Economy Research – INAGEA Carretera de Valldemossa, Palma de Mallorca, Spain
| | - Adriano Nunes-Nesi
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Wagner L. Araújo
- Max-Planck Partner Group, Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
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14
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Batista-Silva W, Medeiros DB, Rodrigues-Salvador A, Daloso DM, Omena-Garcia RP, Oliveira FS, Pino LE, Peres LEP, Nunes-Nesi A, Fernie AR, Zsögön A, Araújo WL. Modulation of auxin signalling through DIAGETROPICA and ENTIRE differentially affects tomato plant growth via changes in photosynthetic and mitochondrial metabolism. Plant Cell Environ 2019; 42:448-465. [PMID: 30066402 DOI: 10.1111/pce.13413] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2018] [Revised: 07/17/2018] [Accepted: 07/20/2018] [Indexed: 06/08/2023]
Abstract
Auxin modulates a range of plant developmental processes including embryogenesis, organogenesis, and shoot and root development. Recent studies have shown that plant hormones also strongly influence metabolic networks, which results in altered growth phenotypes. Modulating auxin signalling pathways may therefore provide an opportunity to alter crop performance. Here, we performed a detailed physiological and metabolic characterization of tomato (Solanum lycopersicum) mutants with either increased (entire) or reduced (diageotropica-dgt) auxin signalling to investigate the consequences of altered auxin signalling on photosynthesis, water use, and primary metabolism. We show that reduced auxin sensitivity in dgt led to anatomical and physiological modifications, including altered stomatal distribution along the leaf blade and reduced stomatal conductance, resulting in clear reductions in both photosynthesis and water loss in detached leaves. By contrast, plants with higher auxin sensitivity (entire) increased the photosynthetic capacity, as deduced by higher Vcmax and Jmax coupled with reduced stomatal limitation. Remarkably, our results demonstrate that auxin-sensitive mutants (dgt) are characterized by impairments in the usage of starch that led to lower growth, most likely associated with decreased respiration. Collectively, our findings suggest that mutations in different components of the auxin signalling pathway specifically modulate photosynthetic and respiratory processes.
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Affiliation(s)
- Willian Batista-Silva
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - David B Medeiros
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Acácio Rodrigues-Salvador
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Danilo M Daloso
- Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Rebeca P Omena-Garcia
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Franciele Santos Oliveira
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Lilian Ellen Pino
- Departmento de Ciências Biológicas, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Piracicaba, Brazil
| | - Lázaro Eustáquio Pereira Peres
- Departmento de Ciências Biológicas, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Piracicaba, Brazil
| | - Adriano Nunes-Nesi
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Alisdair R Fernie
- Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Agustín Zsögön
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Wagner L Araújo
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
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15
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Sousa RHV, Carvalho FEL, Lima-Melo Y, Alencar VTCB, Daloso DM, Margis-Pinheiro M, Komatsu S, Silveira JAG. Impairment of peroxisomal APX and CAT activities increases protection of photosynthesis under oxidative stress. J Exp Bot 2019; 70:627-639. [PMID: 30312463 PMCID: PMC6322566 DOI: 10.1093/jxb/ery354] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2018] [Accepted: 10/03/2018] [Indexed: 05/21/2023]
Abstract
Retrograde signalling pathways that are triggered by changes in cellular redox homeostasis remain poorly understood. Transformed rice plants that are deficient in peroxisomal ascorbate peroxidase APX4 (OsAPX4-RNAi) are known to exhibit more effective protection of photosynthesis against oxidative stress than controls when catalase (CAT) is inhibited, but the mechanisms involved have not been characterized. An in-depth physiological and proteomics analysis was therefore performed on OsAPX4-RNAi CAT-inhibited rice plants. Loss of APX4 function led to an increased abundance of several proteins that are involved in essential metabolic pathways, possibly as a result of increased tissue H2O2 levels. Higher photosynthetic activities observed in the OsAPX4-RNAi plants under CAT inhibition were accompanied by higher levels of Rubisco, higher maximum rates of Rubisco carboxylation, and increased photochemical efficiencies, together with large increases in photosynthesis-related proteins. Large increases were also observed in the levels of proteins involved in the ascorbate/glutathione cycle and in other antioxidant-related pathways, and these changes may be important in the protection of photosynthesis in the OsAPX4-RNAi plants. Large increases in the abundance of proteins localized in the nuclei and mitochondria were also observed, together with increased levels of proteins involved in important cellular pathways, particularly protein translation. Taken together, the results show that OsAPX4-RNAi plants exhibit significant metabolic reprogramming, which incorporates a more effective antioxidant response to protect photosynthesis under conditions of impaired CAT activity.
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Affiliation(s)
- Rachel H V Sousa
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Fortaleza, Ceará, Brazil
| | - Fabricio E L Carvalho
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Fortaleza, Ceará, Brazil
| | - Yugo Lima-Melo
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Fortaleza, Ceará, Brazil
- Molecular Plant Biology, Department of Biochemistry, University of Turku, Turku, Finland
| | - Vicente T C B Alencar
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Fortaleza, Ceará, Brazil
| | - Danilo M Daloso
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Fortaleza, Ceará, Brazil
| | - Marcia Margis-Pinheiro
- Department of Genetics, Federal University of Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
| | - Setsuko Komatsu
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan
| | - Joaquim A G Silveira
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Fortaleza, Ceará, Brazil
- Correspondence:
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16
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da Fonseca-Pereira P, Daloso DM, Gago J, de Oliveira Silva FM, Condori-Apfata JA, Florez-Sarasa I, Tohge T, Reichheld JP, Nunes-Nesi A, Fernie AR, Araújo WL. The Mitochondrial Thioredoxin System Contributes to the Metabolic Responses Under Drought Episodes in Arabidopsis. Plant Cell Physiol 2019; 60:213-229. [PMID: 30329109 DOI: 10.1093/pcp/pcy194] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2018] [Indexed: 05/04/2023]
Abstract
Thioredoxins (Trxs) modulate metabolic responses during stress conditions; however, the mechanisms governing the responses of plants subjected to multiple drought events and the role of Trxs under these conditions are not well understood. Here we explored the significance of the mitochondrial Trx system in Arabidopsis following exposure to single and repeated drought events. We analyzed the previously characterized NADPH-dependent Trx reductase A and B double mutant (ntra ntrb) and two independent mitochondrial thioredoxin o1 (trxo1) mutant lines. Following similar reductions in relative water content (∼50%), Trx mutants subjected to two drought cycles displayed a significantly higher maximum quantum efficiency (Fv/Fm) and were less sensitive to drought than their wild-type counterparts and than all genotypes subjected to a single drought event. Trx mutant plants displayed a faster recovery after two cycles of drought, as observed by the higher accumulation of secondary metabolites and higher stomatal conductance. Our results indicate that plants exposed to multiple drought cycles are able to modulate their subsequent metabolic and physiological response, suggesting the occurrence of an exquisite acclimation in stressed Arabidopsis plants. Moreover, this differential acclimation involves the participation of a set of metabolic changes as well as redox poise alteration following stress recovery.
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Affiliation(s)
- Paula da Fonseca-Pereira
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, Potsdam-Golm, Germany
- Max-Planck Partner Group, Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Danilo M Daloso
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, Potsdam-Golm, Germany
| | - Jorge Gago
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, Potsdam-Golm, Germany
- Research Group on Plant Biology under Mediterranean Conditions, Universitat de les Illes Balears, Palma de Mallorca, Illes Balears, Spain
| | | | - Jorge A Condori-Apfata
- Max-Planck Partner Group, Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Igor Florez-Sarasa
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, Potsdam-Golm, Germany
| | - Takayuki Tohge
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, Potsdam-Golm, Germany
| | - Jean-Philippe Reichheld
- Laboratoire Génome et Développement des Plantes, Unité Mixte de Recherche 5096, Centre National de la Recherche Scientifique, Université de Perpignan Via Domitia, Perpignan, France
| | - Adriano Nunes-Nesi
- Max-Planck Partner Group, Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Alisdair R Fernie
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, Potsdam-Golm, Germany
| | - Wagner L Araújo
- Max-Planck Partner Group, Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
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17
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Yoshida T, Anjos LD, Medeiros DB, Araújo WL, Fernie AR, Daloso DM. Insights into ABA-mediated regulation of guard cell primary metabolism revealed by systems biology approaches. Prog Biophys Mol Biol 2018; 146:37-49. [PMID: 30447225 DOI: 10.1016/j.pbiomolbio.2018.11.006] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2018] [Revised: 11/02/2018] [Accepted: 11/13/2018] [Indexed: 01/08/2023]
Abstract
Despite the fact that guard cell abscisic acid (ABA) signalling pathway is well documented, our understanding concerning how and to which extent ABA regulates guard cell metabolism remains fragmentary. Here we have adopted different systems approaches to investigate how ABA modulates guard cell central metabolism by providing genes that are possibly ABA-regulated. By using previous published Arabidopsis guard cell transcript profiling data, we carried out an extensive co-expression network analysis using ABA-related genes and those related to the metabolism and transport of sugars, starch and organic acids. Next, we investigated the presence of ABA responsive elements (ABRE) in the promoter of genes that are highly expressed in guard cells, responsive to ABA and co-expressed with ABA-related genes. Together, these analyses indicated that 44 genes are likely regulated by ABA and 8 of them are highly expressed in guard cells in both the presence and absence of ABA, including genes of the tricarboxylic acid cycle and those related to sucrose and hexose transport and metabolism. It seems likely that ABA may modulate both sucrose transport through guard cell plasma membrane and sucrose metabolism within guard cells. In this context, genes associated with sucrose synthase, sucrose phosphate synthase, trehalose-6-phosphate, invertase, UDP-glucose epimerase/pyrophosphorylase and different sugar transporters contain ABRE in their promoter and are thus possibly ABA regulated. Although validation experiments are required, our study highlights the importance of systems biology approaches to drive new hypothesis and to unravel genes and pathways that are regulated by ABA in guard cells.
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Affiliation(s)
- Takuya Yoshida
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam, Golm, 14476, Germany.
| | - Letícia Dos Anjos
- Departamento de Biologia Vegetal, Universidade Federal de Lavras, Lavras, Minas Gerais, 62700-000, Brazil
| | - David B Medeiros
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam, Golm, 14476, Germany; Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Wagner L Araújo
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Alisdair R Fernie
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam, Golm, 14476, Germany
| | - Danilo M Daloso
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, Ceará, 60451-970, Brazil.
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18
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Medeiros DB, Perez Souza L, Antunes WC, Araújo WL, Daloso DM, Fernie AR. Sucrose breakdown within guard cells provides substrates for glycolysis and glutamine biosynthesis during light-induced stomatal opening. Plant J 2018. [PMID: 29543357 DOI: 10.1111/tpj.13889] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Sucrose has long been thought to play an osmolytic role in stomatal opening. However, recent evidence supports the idea that the role of sucrose in this process is primarily energetic. Here we used a combination of stomatal aperture assays and kinetic [U-13 C]-sucrose isotope labelling experiments to confirm that sucrose is degraded during light-induced stomatal opening and to define the fate of the C released from sucrose breakdown. We additionally show that addition of sucrose to the medium did not enhance light-induced stomatal opening. The isotope experiment showed a consistent 13 C enrichment in fructose and glucose, indicating that during light-induced stomatal opening sucrose is indeed degraded. We also observed a clear 13 C enrichment in glutamate and glutamine (Gln), suggesting a concerted activation of sucrose degradation, glycolysis and the tricarboxylic acid cycle. This is in contrast to the situation for Gln biosynthesis in leaves under light, which has been demonstrated to rely on previously stored C. Our results thus collectively allow us to redraw current models concerning the influence of sucrose during light-induced stomatal opening, in which, instead of being accumulated, sucrose is degraded providing C skeletons for Gln biosynthesis.
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Affiliation(s)
- David B Medeiros
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, Potsdam-Golm, 14476, Germany
- Max-Planck Partner Group, Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Leonardo Perez Souza
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, Potsdam-Golm, 14476, Germany
| | - Werner C Antunes
- Departamento de Biologia, Universidade Estadual de Maringá, Maringá, Paraná, 87020-900, Brazil
| | - Wagner L Araújo
- Max-Planck Partner Group, Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brazil
| | - Danilo M Daloso
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, Ceará, 60440-970, Brazil
| | - Alisdair R Fernie
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, Potsdam-Golm, 14476, Germany
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19
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Lima VF, de Souza LP, Williams TCR, Fernie AR, Daloso DM. Gas Chromatography-Mass Spectrometry-Based 13C-Labeling Studies in Plant Metabolomics. Methods Mol Biol 2018; 1778:47-58. [PMID: 29761430 DOI: 10.1007/978-1-4939-7819-9_4] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/09/2022]
Abstract
Stable-isotope labeling analysis has been used to discover new metabolic pathways and their key regulatory points in a wide range of organisms. Given the complexity of the plant metabolic network, this analysis provides information complementary to that obtained from metabolite profiling that can be used to understand how plants cope with adverse conditions, and how metabolism varies between different cells, tissues, and organs. Here we describe the experimental procedures from sample harvesting and extraction to mass spectral analysis and interpretation that allow the researcher to perform 13C-labeling experiments. A wide range of plant material, from single cells to whole plants, can be used to investigate the metabolic fate of the 13C from a predefined tracer. Thus, a key point of this analysis is to choose the correct biological system, the substrate and the condition to be investigated; all of which implicitly relies on the biological question to be investigated. Rapid sample quenching and a careful data analysis are also critical points in such studies. By contrast to other metabolomic approaches, stable-isotope labeling can provide information concerning the fluxes through metabolic networks, which is essential for understanding and manipulating metabolic phenotypes and therefore of pivotal importance for both systems biology and plant metabolic engineering.
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Affiliation(s)
- Valéria F Lima
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, CE, Brazil
| | | | | | - Alisdair R Fernie
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Danilo M Daloso
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, CE, Brazil.
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20
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Daloso DM, Medeiros DB, Dos Anjos L, Yoshida T, Araújo WL, Fernie AR. Metabolism within the specialized guard cells of plants. New Phytol 2017; 216:1018-1033. [PMID: 28984366 DOI: 10.1111/nph.14823] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2017] [Accepted: 08/21/2017] [Indexed: 05/21/2023]
Abstract
Contents 1018 I. 1018 II. 1019 III. 1022 IV. 1025 V. 1026 VI. 1029 1030 References 1030 SUMMARY: Stomata are leaf epidermal structures consisting of two guard cells surrounding a pore. Changes in the aperture of this pore regulate plant water-use efficiency, defined as gain of C by photosynthesis per leaf water transpired. Stomatal aperture is actively regulated by reversible changes in guard cell osmolyte content. Despite the fact that guard cells can photosynthesize on their own, the accumulation of mesophyll-derived metabolites can seemingly act as signals which contribute to the regulation of stomatal movement. It has been shown that malate can act as a signalling molecule and a counter-ion of potassium, a well-established osmolyte that accumulates in the vacuole of guard cells during stomatal opening. By contrast, their efflux from guard cells is an important mechanism during stomatal closure. It has been hypothesized that the breakdown of starch, sucrose and lipids is an important mechanism during stomatal opening, which may be related to ATP production through glycolysis and mitochondrial metabolism, and/or accumulation of osmolytes such as sugars and malate. However, experimental evidence supporting this theory is lacking. Here we highlight the particularities of guard cell metabolism and discuss this in the context of the guard cells themselves and their interaction with the mesophyll cells.
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Affiliation(s)
- Danilo M Daloso
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, Ceará, 60451-970, Brasil
| | - David B Medeiros
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, Potsdam-Golm, 14476, Germany
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brasil
| | - Letícia Dos Anjos
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, Ceará, 60451-970, Brasil
| | - Takuya Yoshida
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, Potsdam-Golm, 14476, Germany
| | - Wagner L Araújo
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brasil
| | - Alisdair R Fernie
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, Potsdam-Golm, 14476, Germany
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21
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Medeiros DB, Barros KA, Barros JAS, Omena-Garcia RP, Arrivault S, Sanglard LMVP, Detmann KC, Silva WB, Daloso DM, DaMatta FM, Nunes-Nesi A, Fernie AR, Araújo WL. Impaired Malate and Fumarate Accumulation Due to the Mutation of the Tonoplast Dicarboxylate Transporter Has Little Effects on Stomatal Behavior. Plant Physiol 2017; 175:1068-1081. [PMID: 28899959 PMCID: PMC5664473 DOI: 10.1104/pp.17.00971] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2017] [Accepted: 09/10/2017] [Indexed: 05/21/2023]
Abstract
Malate is a central metabolite involved in a multiplicity of plant metabolic pathways, being associated with mitochondrial metabolism and playing significant roles in stomatal movements. Vacuolar malate transport has been characterized at the molecular level and is performed by at least one carrier protein and two channels in Arabidopsis (Arabidopsis thaliana) vacuoles. The absence of the Arabidopsis tonoplast Dicarboxylate Transporter (tDT) in the tdt knockout mutant was associated previously with an impaired accumulation of malate and fumarate in leaves. Here, we investigated the consequences of this lower accumulation on stomatal behavior and photosynthetic capacity as well as its putative metabolic impacts. Neither the stomatal conductance nor the kinetic responses to dark, light, or high CO2 were highly affected in tdt plants. In addition, we did not observe any impact on stomatal aperture following incubation with abscisic acid, malate, or citrate. Furthermore, an effect on photosynthetic capacity was not observed in the mutant lines. However, leaf mitochondrial metabolism was affected in the tdt plants. Levels of the intermediates of the tricarboxylic acid cycle were altered, and increases in both light and dark respiration were observed. We conclude that manipulation of the tonoplastic organic acid transporter impacted mitochondrial metabolism, while the overall stomatal and photosynthetic capacity were unaffected.
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Affiliation(s)
- David B Medeiros
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
- Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany
| | - Kallyne A Barros
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
| | - Jessica Aline S Barros
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
| | - Rebeca P Omena-Garcia
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
| | - Stéphanie Arrivault
- Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany
| | - Lílian M V P Sanglard
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
| | - Kelly C Detmann
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
| | - Willian Batista Silva
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
| | - Danilo M Daloso
- Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany
| | - Fábio M DaMatta
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
| | - Adriano Nunes-Nesi
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
| | - Alisdair R Fernie
- Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany
| | - Wagner L Araújo
- Max-Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil
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22
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Robaina-Estévez S, Daloso DM, Zhang Y, Fernie AR, Nikoloski Z. Resolving the central metabolism of Arabidopsis guard cells. Sci Rep 2017; 7:8307. [PMID: 28814793 PMCID: PMC5559522 DOI: 10.1038/s41598-017-07132-9] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2016] [Accepted: 06/23/2017] [Indexed: 12/22/2022] Open
Abstract
Photosynthesis and water use efficiency, key factors affecting plant growth, are directly controlled by microscopic and adjustable pores in the leaf-the stomata. The size of the pores is modulated by the guard cells, which rely on molecular mechanisms to sense and respond to environmental changes. It has been shown that the physiology of mesophyll and guard cells differs substantially. However, the implications of these differences to metabolism at a genome-scale level remain unclear. Here, we used constraint-based modeling to predict the differences in metabolic fluxes between the mesophyll and guard cells of Arabidopsis thaliana by exploring the space of fluxes that are most concordant to cell-type-specific transcript profiles. An independent 13C-labeling experiment using isolated mesophyll and guard cells was conducted and provided support for our predictions about the role of the Calvin-Benson cycle in sucrose synthesis in guard cells. The combination of in silico with in vivo analyses indicated that guard cells have higher anaplerotic CO2 fixation via phosphoenolpyruvate carboxylase, which was demonstrated to be an important source of malate. Beyond highlighting the metabolic differences between mesophyll and guard cells, our findings can be used in future integrated modeling of multi-cellular plant systems and their engineering towards improved growth.
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Affiliation(s)
- Semidán Robaina-Estévez
- Systems Biology and Mathematical Modeling Group, Max Planck Institute of Molecular Plant Physiology, Potsdam, Golm, Germany
- Bioinformatics Group, Institute of Biochemistry and Biology, University of Potsdam, Potsdam, Golm, Germany
| | - Danilo M Daloso
- Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, Potsdam, Golm, Germany
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, CE, Brazil
| | - Youjun Zhang
- Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, Potsdam, Golm, Germany
| | - Alisdair R Fernie
- Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, Potsdam, Golm, Germany
| | - Zoran Nikoloski
- Systems Biology and Mathematical Modeling Group, Max Planck Institute of Molecular Plant Physiology, Potsdam, Golm, Germany.
- Bioinformatics Group, Institute of Biochemistry and Biology, University of Potsdam, Potsdam, Golm, Germany.
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23
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Geigenberger P, Thormählen I, Daloso DM, Fernie AR. The Unprecedented Versatility of the Plant Thioredoxin System. Trends Plant Sci 2017; 22:249-262. [PMID: 28139457 DOI: 10.1016/j.tplants.2016.12.008] [Citation(s) in RCA: 142] [Impact Index Per Article: 20.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2016] [Revised: 11/25/2016] [Accepted: 12/14/2016] [Indexed: 05/18/2023]
Abstract
Thioredoxins are ubiquitous enzymes catalyzing reversible disulfide-bond formation to regulate structure and function of many proteins in diverse organisms. In recent years, reverse genetics and biochemical approaches were used to resolve the functions, specificities, and interactions of the different thioredoxin isoforms and reduction systems in planta and revealed the most versatile thioredoxin system of all organisms. Here we review the emerging roles of the thioredoxin system, namely the integration of thylakoid energy transduction, metabolism, gene expression, growth, and development under fluctuating environmental conditions. We argue that these new developments help us to understand why plants organize such a divergent composition of thiol redox networks and provide insights into the regulatory hierarchy that operates between them.
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Affiliation(s)
- Peter Geigenberger
- Ludwig-Maximilians-Universität (LMU) München, Department Biology I, 82152 Planegg-Martinsried, Germany.
| | - Ina Thormählen
- Ludwig-Maximilians-Universität (LMU) München, Department Biology I, 82152 Planegg-Martinsried, Germany
| | - Danilo M Daloso
- Max-Planck-Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany; Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, Brazil
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany
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24
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Batista Silva W, Daloso DM, Fernie AR, Nunes-Nesi A, Araújo WL. Can stable isotope mass spectrometry replace radiolabelled approaches in metabolic studies? Plant Sci 2016; 249:59-69. [PMID: 27297990 DOI: 10.1016/j.plantsci.2016.05.011] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2015] [Revised: 04/21/2016] [Accepted: 05/13/2016] [Indexed: 05/03/2023]
Abstract
Metabolic pathways and the key regulatory points thereof can be deduced using isotopically labelled substrates. One prerequisite is the accurate measurement of the labeling pattern of targeted metabolites. The subsequent estimation of metabolic fluxes following incubation in radiolabelled substrates has been extensively used. Radiolabelling is a sensitive approach and allows determination of total label uptake since the total radiolabel content is easy to detect. However, the incubation of cells, tissues or the whole plant in a stable isotope enriched environment and the use of either mass spectrometry or nuclear magnetic resonance techniques to determine label incorporation within specific metabolites offers the possibility to readily obtain metabolic information with higher resolution. It additionally also offers an important complement to other post-genomic strategies such as metabolite profiling providing insights into the regulation of the metabolic network and thus allowing a more thorough description of plant cellular function. Thus, although safety concerns mean that stable isotope feeding is generally preferred, the techniques are in truth highly complementary and application of both approaches in tandem currently probably provides the best route towards a comprehensive understanding of plant cellular metabolism.
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Affiliation(s)
- Willian Batista Silva
- Max Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa-MG, Brazil.
| | - Danilo M Daloso
- Max-Planck-Institute of Molecular Plant Physiology Am Mühlenberg 1, 14476,Golm Potsdam, Germany.
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology Am Mühlenberg 1, 14476,Golm Potsdam, Germany.
| | - Adriano Nunes-Nesi
- Max Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa-MG, Brazil.
| | - Wagner L Araújo
- Max Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa-MG, Brazil.
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25
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Abstract
The control of stomatal aperture involves reversible changes in the concentration of osmolytes in guard cells. Sucrose has long been proposed to have an osmolytic role in guard cells. However, direct evidence for such a role is lacking. Furthermore, recent evidence suggests that sucrose may perform additional roles in guard cells. Here, we provide an update covering the multiple roles of sucrose in guard cell regulation, highlighting the knowledge accumulated regarding spatiotemporal differences in the synthesis, accumulation, and degradation of sucrose as well as reviewing the role of sucrose as a metabolic connector between mesophyll and guard cells. Analysis of transcriptomic data from previous studies reveals that several genes encoding sucrose and hexose transporters and genes involved in gluconeogenesis, sucrose and trehalose metabolism are highly expressed in guard cells compared with mesophyll cells. Interestingly, this analysis also showed that guard cells have considerably higher expression of C4 -marker genes than mesophyll cells. We discuss the possible roles of these genes in guard cell function and the role of sucrose in stomatal opening and closure. Finally, we provide a perspective for future experiments which are required to fill gaps in our understanding of both guard cell metabolism and stomatal regulation.
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Affiliation(s)
- Danilo M Daloso
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
| | - Leticia Dos Anjos
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
| | - Alisdair R Fernie
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
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26
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Pires MV, Pereira Júnior AA, Medeiros DB, Daloso DM, Pham PA, Barros KA, Engqvist MKM, Florian A, Krahnert I, Maurino VG, Araújo WL, Fernie AR. The influence of alternative pathways of respiration that utilize branched-chain amino acids following water shortage in Arabidopsis. Plant Cell Environ 2016; 39:1304-19. [PMID: 26616144 DOI: 10.1111/pce.12682] [Citation(s) in RCA: 73] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2015] [Revised: 11/13/2015] [Accepted: 11/15/2015] [Indexed: 05/23/2023]
Abstract
During dark-induced senescence isovaleryl-CoA dehydrogenase (IVDH) and D-2-hydroxyglutarate dehydrogenase (D-2HGDH) act as alternate electron donors to the ubiquinol pool via the electron-transfer flavoprotein/electron-transfer flavoprotein:ubiquinone oxidoreductase (ETF/ETFQO) pathway. However, the role of this pathway in response to other stresses still remains unclear. Here, we demonstrated that this alternative pathway is associated with tolerance to drought in Arabidopsis. In comparison with wild type (WT) and lines overexpressing D-2GHDH, loss-of-function etfqo-1, d2hgdh-2 and ivdh-1 mutants displayed compromised respiration rates and were more sensitive to drought. Our results demonstrated that an operational ETF/ETFQO pathway is associated with plants' ability to withstand drought and to recover growth once water becomes replete. Drought-induced metabolic reprogramming resulted in an increase in tricarboxylic acid (TCA) cycle intermediates and total amino acid levels, as well as decreases in protein, starch and nitrate contents. The enhanced levels of the branched-chain amino acids in loss-of-function mutants appear to be related to their increased utilization as substrates for the TCA cycle under water stress. Our results thus show that mitochondrial metabolism is highly active during drought stress responses and provide support for a role of alternative respiratory pathways within this response.
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Affiliation(s)
- Marcel V Pires
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
- Max-Planck Partner Group, Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - Adilson A Pereira Júnior
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
| | - David B Medeiros
- Max-Planck Partner Group, Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - Danilo M Daloso
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
- Max-Planck Partner Group, Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - Phuong Anh Pham
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
| | - Kallyne A Barros
- Max-Planck Partner Group, Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - Martin K M Engqvist
- Plant Molecular Physiology and Biotechnology, Institute of Plant Developmental and Molecular Biology, Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich-Heine-University, Universitätsstr 1, D-40225, Düsseldorf, Germany
- Department of Chemical and Biological Engineering, Chalmers University of Technology, Göterborg, Sweden
| | - Alexandra Florian
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
| | - Ina Krahnert
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
| | - Veronica G Maurino
- Plant Molecular Physiology and Biotechnology, Institute of Plant Developmental and Molecular Biology, Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich-Heine-University, Universitätsstr 1, D-40225, Düsseldorf, Germany
| | - Wagner L Araújo
- Max-Planck Partner Group, Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - Alisdair R Fernie
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
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27
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Daloso DM, Williams TCR, Antunes WC, Pinheiro DP, Müller C, Loureiro ME, Fernie AR. Guard cell-specific upregulation of sucrose synthase 3 reveals that the role of sucrose in stomatal function is primarily energetic. New Phytol 2016; 209:1470-83. [PMID: 26467445 DOI: 10.1111/nph.13704] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2015] [Accepted: 09/06/2015] [Indexed: 05/21/2023]
Abstract
Isoform 3 of sucrose synthase (SUS3) is highly expressed in guard cells; however, the precise function of SUS3 in this cell type remains to be elucidated. Here, we characterized transgenic Nicotiana tabacum plants overexpressing SUS3 under the control of the stomatal-specific KST1 promoter, and investigated the changes in guard cell metabolism during the dark to light transition. Guard cell-specific SUS3 overexpression led to increased SUS activity, stomatal aperture, stomatal conductance, transpiration rate, net photosynthetic rate and growth. Although only minor changes were observed in the metabolite profile in whole leaves, an increased fructose level and decreased organic acid levels and sucrose to fructose ratio were observed in guard cells of transgenic lines. Furthermore, guard cell sucrose content was lower during light-induced stomatal opening. In a complementary approach, we incubated guard cell-enriched epidermal fragments in (13) C-NaHCO3 and followed the redistribution of label during dark to light transitions; this revealed increased labeling in metabolites of, or associated with, the tricarboxylic acid cycle. The results suggest that sucrose breakdown is a mechanism to provide substrate for the provision of organic acids for respiration, and imply that manipulation of guard cell metabolism may represent an effective strategy for plant growth improvement.
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Affiliation(s)
- Danilo M Daloso
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG, 36570-000, Brazil
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm, 14476, Germany
| | - Thomas C R Williams
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG, 36570-000, Brazil
- Departamento de Botânica, Universidade de Brasilia, Brasília, DF, 70910-900, Brazil
| | - Werner C Antunes
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG, 36570-000, Brazil
- Departamento de Biologia, Universidade Estadual de Maringá, Maringá, PR, 87020-900, Brazil
| | - Daniela P Pinheiro
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG, 36570-000, Brazil
| | - Caroline Müller
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG, 36570-000, Brazil
| | - Marcelo E Loureiro
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG, 36570-000, Brazil
| | - Alisdair R Fernie
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm, 14476, Germany
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Medeiros DB, Martins SCV, Cavalcanti JHF, Daloso DM, Martinoia E, Nunes-Nesi A, DaMatta FM, Fernie AR, Araújo WL. Enhanced Photosynthesis and Growth in atquac1 Knockout Mutants Are Due to Altered Organic Acid Accumulation and an Increase in Both Stomatal and Mesophyll Conductance. Plant Physiol 2016; 170:86-101. [PMID: 26542441 PMCID: PMC4704574 DOI: 10.1104/pp.15.01053] [Citation(s) in RCA: 59] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2015] [Accepted: 11/05/2015] [Indexed: 05/05/2023]
Abstract
Stomata control the exchange of CO2 and water vapor in land plants. Thus, whereas a constant supply of CO2 is required to maintain adequate rates of photosynthesis, the accompanying water losses must be tightly regulated to prevent dehydration and undesired metabolic changes. Accordingly, the uptake or release of ions and metabolites from guard cells is necessary to achieve normal stomatal function. The AtQUAC1, an R-type anion channel responsible for the release of malate from guard cells, is essential for efficient stomatal closure. Here, we demonstrate that mutant plants lacking AtQUAC1 accumulated higher levels of malate and fumarate. These mutant plants not only display slower stomatal closure in response to increased CO2 concentration and dark but are also characterized by improved mesophyll conductance. These responses were accompanied by increases in both photosynthesis and respiration rates, without affecting the activity of photosynthetic and respiratory enzymes and the expression of other transporter genes in guard cells, which ultimately led to improved growth. Collectively, our results highlight that the transport of organic acids plays a key role in plant cell metabolism and demonstrate that AtQUAC1 reduce diffusive limitations to photosynthesis, which, at least partially, explain the observed increments in growth under well-watered conditions.
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Affiliation(s)
- David B Medeiros
- Departamento de Biologia Vegetal (D.B.M., S.C.V.M, J.H.F.C., A.N.-N., F.M.D., W.L.A.) and Max-Planck Partner Group at the Departamento de Biologia Vegetal (D.B.M., J.H.F.C., A.N.-N., W.L.A.), Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil;Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany (D.M.D., A.R.F.); andInstitute of Plant Biology, University of Zurich, Zollikerstrasse 107, CH-8008 Zürich, Switzerland (E.M.)
| | - Samuel C V Martins
- Departamento de Biologia Vegetal (D.B.M., S.C.V.M, J.H.F.C., A.N.-N., F.M.D., W.L.A.) and Max-Planck Partner Group at the Departamento de Biologia Vegetal (D.B.M., J.H.F.C., A.N.-N., W.L.A.), Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil;Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany (D.M.D., A.R.F.); andInstitute of Plant Biology, University of Zurich, Zollikerstrasse 107, CH-8008 Zürich, Switzerland (E.M.)
| | - João Henrique F Cavalcanti
- Departamento de Biologia Vegetal (D.B.M., S.C.V.M, J.H.F.C., A.N.-N., F.M.D., W.L.A.) and Max-Planck Partner Group at the Departamento de Biologia Vegetal (D.B.M., J.H.F.C., A.N.-N., W.L.A.), Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil;Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany (D.M.D., A.R.F.); andInstitute of Plant Biology, University of Zurich, Zollikerstrasse 107, CH-8008 Zürich, Switzerland (E.M.)
| | - Danilo M Daloso
- Departamento de Biologia Vegetal (D.B.M., S.C.V.M, J.H.F.C., A.N.-N., F.M.D., W.L.A.) and Max-Planck Partner Group at the Departamento de Biologia Vegetal (D.B.M., J.H.F.C., A.N.-N., W.L.A.), Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil;Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany (D.M.D., A.R.F.); andInstitute of Plant Biology, University of Zurich, Zollikerstrasse 107, CH-8008 Zürich, Switzerland (E.M.)
| | - Enrico Martinoia
- Departamento de Biologia Vegetal (D.B.M., S.C.V.M, J.H.F.C., A.N.-N., F.M.D., W.L.A.) and Max-Planck Partner Group at the Departamento de Biologia Vegetal (D.B.M., J.H.F.C., A.N.-N., W.L.A.), Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil;Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany (D.M.D., A.R.F.); andInstitute of Plant Biology, University of Zurich, Zollikerstrasse 107, CH-8008 Zürich, Switzerland (E.M.)
| | - Adriano Nunes-Nesi
- Departamento de Biologia Vegetal (D.B.M., S.C.V.M, J.H.F.C., A.N.-N., F.M.D., W.L.A.) and Max-Planck Partner Group at the Departamento de Biologia Vegetal (D.B.M., J.H.F.C., A.N.-N., W.L.A.), Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil;Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany (D.M.D., A.R.F.); andInstitute of Plant Biology, University of Zurich, Zollikerstrasse 107, CH-8008 Zürich, Switzerland (E.M.)
| | - Fábio M DaMatta
- Departamento de Biologia Vegetal (D.B.M., S.C.V.M, J.H.F.C., A.N.-N., F.M.D., W.L.A.) and Max-Planck Partner Group at the Departamento de Biologia Vegetal (D.B.M., J.H.F.C., A.N.-N., W.L.A.), Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil;Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany (D.M.D., A.R.F.); andInstitute of Plant Biology, University of Zurich, Zollikerstrasse 107, CH-8008 Zürich, Switzerland (E.M.)
| | - Alisdair R Fernie
- Departamento de Biologia Vegetal (D.B.M., S.C.V.M, J.H.F.C., A.N.-N., F.M.D., W.L.A.) and Max-Planck Partner Group at the Departamento de Biologia Vegetal (D.B.M., J.H.F.C., A.N.-N., W.L.A.), Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil;Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany (D.M.D., A.R.F.); andInstitute of Plant Biology, University of Zurich, Zollikerstrasse 107, CH-8008 Zürich, Switzerland (E.M.)
| | - Wagner L Araújo
- Departamento de Biologia Vegetal (D.B.M., S.C.V.M, J.H.F.C., A.N.-N., F.M.D., W.L.A.) and Max-Planck Partner Group at the Departamento de Biologia Vegetal (D.B.M., J.H.F.C., A.N.-N., W.L.A.), Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil;Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany (D.M.D., A.R.F.); andInstitute of Plant Biology, University of Zurich, Zollikerstrasse 107, CH-8008 Zürich, Switzerland (E.M.)
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Daloso DM, Antunes WC, Pinheiro DP, Waquim JP, Araújo WL, Loureiro ME, Fernie AR, Williams TCR. Tobacco guard cells fix CO2 by both Rubisco and PEPcase while sucrose acts as a substrate during light-induced stomatal opening. Plant Cell Environ 2015; 38:2353-71. [PMID: 25871738 DOI: 10.1111/pce.12555] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2015] [Revised: 04/07/2015] [Accepted: 04/09/2015] [Indexed: 05/21/2023]
Abstract
Transcriptomic and proteomic studies have improved our knowledge of guard cell function; however, metabolic changes in guard cells remain relatively poorly understood. Here we analysed metabolic changes in guard cell-enriched epidermal fragments from tobacco during light-induced stomatal opening. Increases in sucrose, glucose and fructose were observed during light-induced stomatal opening in the presence of sucrose in the medium while no changes in starch were observed, suggesting that the elevated fructose and glucose levels were a consequence of sucrose rather than starch breakdown. Conversely, reduction in sucrose was observed during light- plus potassium-induced stomatal opening. Concomitant with the decrease in sucrose, we observed an increase in the level as well as in the (13) C enrichment in metabolites of, or associated with, the tricarboxylic acid cycle following incubation of the guard cell-enriched preparations in (13) C-labelled bicarbonate. Collectively, the results obtained support the hypothesis that sucrose is catabolized within guard cells in order to provide carbon skeletons for organic acid production. Furthermore, they provide a qualitative demonstration that CO2 fixation occurs both via ribulose-1,5-biphosphate carboxylase/oxygenase (Rubisco) and phosphoenolpyruvate carboxylase (PEPcase). The combined data are discussed with respect to current models of guard cell metabolism and function.
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Affiliation(s)
- Danilo M Daloso
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, 36570-900, Minas Gerais, Brazil
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm, 14476, Germany
| | - Werner C Antunes
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, 36570-900, Minas Gerais, Brazil
- Departamento de Biologia, Universidade Estadual de Maringá, Maringá, Paraná, 87020-900, Brazil
| | - Daniela P Pinheiro
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, 36570-900, Minas Gerais, Brazil
| | - Jardel P Waquim
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, 36570-900, Minas Gerais, Brazil
| | - Wagner L Araújo
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, 36570-900, Minas Gerais, Brazil
| | - Marcelo E Loureiro
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, 36570-900, Minas Gerais, Brazil
| | - Alisdair R Fernie
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm, 14476, Germany
| | - Thomas C R Williams
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, 36570-900, Minas Gerais, Brazil
- Departamento de Botânica, Universidade de Brasilia, Brasilia, Distrito Federal, 70910-900, Brazil
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30
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Medeiros DB, Daloso DM, Fernie AR, Nikoloski Z, Araújo WL. Utilizing systems biology to unravel stomatal function and the hierarchies underpinning its control. Plant Cell Environ 2015; 38:1457-70. [PMID: 25689387 DOI: 10.1111/pce.12517] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2014] [Revised: 01/20/2015] [Accepted: 01/27/2015] [Indexed: 05/08/2023]
Abstract
Stomata control the concomitant exchange of CO2 and transpiration in land plants. While a constant supply of CO2 is need to maintain the rate of photosynthesis, the accompanying water losses must be tightly regulated to prevent dehydration and undesired metabolic changes. The factors affecting stomatal movement are directly coupled with the cellular networks of guard cells. Although the guard cell has been used as a model for characterization of signaling pathways, several important questions about its functioning remain elusive. Current modeling approaches describe the stomatal conductance in terms of relatively few easy-to-measure variables being unsuitable for in silico design of genetic manipulation strategies. Here, we argue that a system biology approach, combining modeling and high-throughput experiments, may be used to elucidate the mechanisms underlying stomata control and to determine targets for modulation of stomatal responses to environment. In support of our opinion, we review studies demonstrating how high-throughput approaches have provided a systems-view of guard cells. Finally, we emphasize the opportunities and challenges of genome-scale modeling and large-scale data integration for in silico manipulation of guard cell functions to improve crop yields, particularly under stress conditions which are of pertinence both to climate change and water use efficiency.
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Affiliation(s)
- David B Medeiros
- Max-Planck Partner Group, Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Danilo M Daloso
- Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Alisdair R Fernie
- Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Zoran Nikoloski
- Systems Biology and Mathematical Modeling Group, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Wagner L Araújo
- Max-Planck Partner Group, Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
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31
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Araújo WL, Tohge T, Nunes-Nesi A, Daloso DM, Nimick M, Krahnert I, Bunik VI, Moorhead GBG, Fernie AR. Phosphonate analogs of 2-oxoglutarate perturb metabolism and gene expression in illuminated Arabidopsis leaves. Front Plant Sci 2012; 3:114. [PMID: 22876250 PMCID: PMC3410613 DOI: 10.3389/fpls.2012.00114] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2012] [Accepted: 05/14/2012] [Indexed: 05/19/2023]
Abstract
Although the role of the 2-oxoglutarate dehydrogenase complex (2-OGDHC) has previously been demonstrated in plant heterotrophic tissues its role in photosynthetically active tissues remains poorly understood. By using a combination of metabolite and transcript profiles we here investigated the function of 2-OGDHC in leaves of Arabidopsis thaliana via use of specific phosphonate inhibitors of the enzyme. Incubation of leaf disks with the inhibitors revealed that they produced the anticipated effects on the in situ enzyme activity. In vitro experiments revealed that succinyl phosphonate (SP) and a carboxy ethyl ester of SP are slow-binding inhibitors of the 2-OGDHC. Our results indicate that the reduced respiration rates are associated with changes in the regulation of metabolic and signaling pathways leading to an imbalance in carbon-nitrogen metabolism and cell homeostasis. The inducible alteration of primary metabolism was associated with altered expression of genes belonging to networks of amino acids, plant respiration, and sugar metabolism. In addition, by using isothermal titration calorimetry we excluded the possibility that the changes in gene expression resulted from an effect on 2-oxoglutarate (2OG) binding to the carbon/ATP sensing protein PII. We also demonstrated that the 2OG degradation by the 2-oxoglutarate dehydrogenase strongly influences the distribution of intermediates of the tricarboxylic acid (TCA) cycle and the GABA shunt. Our results indicate that the TCA cycle activity is clearly working in a non-cyclic manner upon 2-OGDHC inhibition during the light period.
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Affiliation(s)
- Wagner L. Araújo
- Max-Planck-Institut für Molekulare PflanzenphysiologiePotsdam-Golm, Germany
- Departamento de Biologia Vegetal, Universidade Federal de ViçosaViçosa, Minas Gerais, Brazil
| | - Takayuki Tohge
- Max-Planck-Institut für Molekulare PflanzenphysiologiePotsdam-Golm, Germany
| | - Adriano Nunes-Nesi
- Max-Planck Partner Group, Departamento de Biologia Vegetal, Universidade Federal de ViçosaViçosa, Minas Gerais, Brazil
| | - Danilo M. Daloso
- Max-Planck-Institut für Molekulare PflanzenphysiologiePotsdam-Golm, Germany
- Departamento de Biologia Vegetal, Universidade Federal de ViçosaViçosa, Minas Gerais, Brazil
| | - Mhairi Nimick
- Department of Biological Sciences, University of CalgaryCalgary, AB, Canada
| | - Ina Krahnert
- Max-Planck-Institut für Molekulare PflanzenphysiologiePotsdam-Golm, Germany
| | - Victoria I. Bunik
- A.N. Belozersly Institute of Physico-Chemical Biology, Moscow State UniversityMoscow, Russia
| | | | - Alisdair R. Fernie
- Max-Planck-Institut für Molekulare PflanzenphysiologiePotsdam-Golm, Germany
- *Correspondence: Alisdair R. Fernie, Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany. e-mail:
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