1
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Riverón S, Raoult V, Slip DJ, Harcourt RG. Lipid extraction has tissue-dependent effects on isotopic values (δ 34 S, δ 13 C, and δ 15 N) from different marine predators. Rapid Commun Mass Spectrom 2022; 36:e9346. [PMID: 35737589 PMCID: PMC9539579 DOI: 10.1002/rcm.9346] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Revised: 05/31/2022] [Accepted: 06/22/2022] [Indexed: 06/15/2023]
Abstract
RATIONALE The use of sulfur isotopes to study trophic ecology in marine ecosystems has increased in the past decade. Unlike other commonly used isotopes (e.g., carbon), sulfur can better discriminate benthic and pelagic productivity. However, how lipid extraction affects sulfur isotopic values has not been assessed, despite its frequent use to remove lipid effects on δ13 C values. METHODS We used white muscle and liver samples from two species of sharks and skin samples from two species of pinnipeds (sea lion and fur seal) to assess the effects of lipid extraction on stable isotope values for δ34 S, δ13 C, and δ15 N. Isotopic values were determined using a continuous flow-isotope ratio mass spectrometer coupled to an elemental analyzer. RESULTS Lipid extraction significantly decreased δ34 S values in shark tissues, more so for liver than muscle (-4.6 ± 0.9‰ vs -0.8 ± 0.3‰, average change), with nearly no change in their standard deviations. Lipid extraction did not affect δ34 S values from pinniped skin samples (0.2 ± 0.8‰, average change). After lipid extraction, consistent increases in δ13 C values (0.2‰-7.3‰) were detected as expected, especially in tissue with high lipid content (C:N >4). After lipid extraction, significant increases in δ15 N values (0.5‰-1.4‰) were found in shark muscle and liver tissues. For pinniped skin samples, δ15 N values were not significantly lower after lipid extraction (-0.4‰ to -0.1‰). CONCLUSIONS Lipid extraction did not have a strong impact on δ34 S values of shark muscle and pinniped skin (≤1‰). However, our results suggest it is essential to consider the effects of lipid extraction when interpreting results from δ34 S values of shark liver tissue, as they significantly depleted values relative to bulk tissue (~5‰). This may reflect selective removal of sulfolipids and glutathione present in higher concentrations in the liver than in muscle and skin and requires further investigation.
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Affiliation(s)
- Sabrina Riverón
- Marine Predator Research Group, School of Natural SciencesMacquarie UniversitySydneyNew South WalesAustralia
| | - Vincent Raoult
- School of Environmental and Life SciencesUniversity of NewcastleOurimbahNew South WalesAustralia
- Marine Ecology GroupSchool of Natural SciencesMacquarie UniversitySydneyNew South WalesAustralia
| | - David J. Slip
- Marine Predator Research Group, School of Natural SciencesMacquarie UniversitySydneyNew South WalesAustralia
- Taronga Institute of Science and LearningTaronga Conservation Society AustraliaSydneyNew South WalesAustralia
| | - Robert G. Harcourt
- Marine Predator Research Group, School of Natural SciencesMacquarie UniversitySydneyNew South WalesAustralia
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2
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Ryan LA, Slip DJ, Chapuis L, Collin SP, Gennari E, Hemmi JM, How MJ, Huveneers C, Peddemors VM, Tosetto L, Hart NS. A shark's eye view: testing the 'mistaken identity theory' behind shark bites on humans. J R Soc Interface 2021; 18:20210533. [PMID: 34699727 PMCID: PMC8548079 DOI: 10.1098/rsif.2021.0533] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022] Open
Abstract
Shark bites on humans are rare but are sufficiently frequent to generate substantial public concern, which typically leads to measures to reduce their frequency. Unfortunately, we understand little about why sharks bite humans. One theory for bites occurring at the surface, e.g. on surfers, is that of mistaken identity, whereby sharks mistake humans for their typical prey (pinnipeds in the case of white sharks). This study tests the mistaken identity theory by comparing video footage of pinnipeds, humans swimming and humans paddling surfboards, from the perspective of a white shark viewing these objects from below. Videos were processed to reflect how a shark's retina would detect the visual motion and shape cues. Motion cues of humans swimming, humans paddling surfboards and pinnipeds swimming did not differ significantly. The shape of paddled surfboards and human swimmers was also similar to that of pinnipeds with their flippers abducted. The difference in shape between pinnipeds with abducted versus adducted flippers was bigger than between pinnipeds with flippers abducted and surfboards or human swimmers. From the perspective of a white shark, therefore, neither visual motion nor shape cues allow an unequivocal visual distinction between pinnipeds and humans, supporting the mistaken identity theory behind some bites.
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Affiliation(s)
- Laura A Ryan
- Department of Biological Sciences, Macquarie University, North Ryde, New South Wales 2109, Australia
| | - David J Slip
- Taronga Conservation Society Australia, Bradley's Head Road, Mosman, New South Wales 2088, Australia
| | - Lucille Chapuis
- Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4QD, UK
| | - Shaun P Collin
- School of Life Sciences, La Trobe University, Bundoora, Victoria 3086, Australia
| | - Enrico Gennari
- Oceans Research Institute, Mossel Bay 6500, South Africa.,South African Institute for Aquatic Biodiversity, Private Bag 1015, Grahamstown 6140, South Africa.,Department of Ichthyology and Fisheries Science, Rhodes University, Grahamstown 6140, South Africa
| | - Jan M Hemmi
- School of Biological Sciences and The UWA Oceans Institute, M092, University of Western Australia, Perth, Western Australia 6009, Australia
| | - Martin J How
- School of Biological Sciences, University of Bristol, Bristol BS8 1TQ, UK
| | - Charlie Huveneers
- College of Science and Engineering, Flinders University, Bedford Park, South Australia 5042, Australia
| | - Victor M Peddemors
- New South Wales Department of Primary Industries, Sydney Institute of Marine Science, Mosman, New South Wales 2088, Australia
| | - Louise Tosetto
- Department of Biological Sciences, Macquarie University, North Ryde, New South Wales 2109, Australia
| | - Nathan S Hart
- Department of Biological Sciences, Macquarie University, North Ryde, New South Wales 2109, Australia
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3
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Riverón S, Raoult V, Baylis AMM, Jones KA, Slip DJ, Harcourt RG. Pelagic and benthic ecosystems drive differences in population and individual specializations in marine predators. Oecologia 2021; 196:891-904. [PMID: 34173892 DOI: 10.1007/s00442-021-04974-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2020] [Accepted: 06/13/2021] [Indexed: 11/24/2022]
Abstract
Individual specialization, which describes whether populations are comprised of dietary generalists or specialists, has profound ecological and evolutionary implications. However, few studies have quantified individual specialization within and between sympatric species that are functionally similar but have different foraging modes. We assessed the relationship between individual specialization, isotopic niche metrics and foraging behaviour of two marine predators with contrasting foraging modes: pelagic foraging female South American fur seals (Arctocephalus australis) and benthic foraging female southern sea lions (Otaria byronia). Stable isotope analysis of carbon and nitrogen was conducted along the length of adult female vibrissae to determine isotopic niche metrics and the degree of individual specialization. Vibrissae integrated time ranged between 1.1 and 5.5 years, depending on vibrissae length. We found limited overlap in dietary niche-space. Broader population niche sizes were associated with higher degrees of individual specialization, while narrower population niches with lower degrees of individual specialization. The degree of individual specialization was influenced by pelagic and benthic foraging modes. Specifically, South American fur seals, foraging in dynamic pelagic environments with abundant but similar prey, comprised specialist populations composed of generalist individuals. In contrast, benthic southern sea lions foraging in habitats with diverse but less abundant prey had more generalist populations composed of highly specialized individuals. We hypothesize that differences in specialization within and between populations were related to prey availability and habitat differences. Our study supports growing body of literature highlighting that individual specialization is a critical factor in shaping the ecological niche of higher marine predators.
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Affiliation(s)
- Sabrina Riverón
- Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, NSW, 2113, Australia.
| | - Vincent Raoult
- School of Environmental and Life Sciences, University of Newcastle, Ourimbah, Australia
| | - Alastair M M Baylis
- Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, NSW, 2113, Australia.,South Atlantic Environmental Research Institute, Stanley Cottage, PO Box 609, Stanley, FIQQ 1ZZ, Falkland Islands
| | - Kayleigh A Jones
- British Antarctic Survey, High Cross, Madingley Rd, Cambridge, CB3 0ET, UK.,University of Exeter, Penryn Campus, Penryn, Cornwall, TR10 9FE, UK
| | - David J Slip
- Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, NSW, 2113, Australia.,Taronga Conservation Society Australia, Bradley's Head Road, Mosman, NSW, 2088, Australia
| | - Robert G Harcourt
- Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, NSW, 2113, Australia
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4
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Hocking DP, Marx FG, Wang S, Burton D, Thompson M, Park T, Burville B, Richards HL, Sattler R, Robbins J, Miguez RP, Fitzgerald EMG, Slip DJ, Evans AR. Convergent evolution of forelimb-propelled swimming in seals. Curr Biol 2021; 31:2404-2409.e2. [PMID: 33961784 DOI: 10.1016/j.cub.2021.03.019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2020] [Revised: 10/11/2020] [Accepted: 03/04/2021] [Indexed: 10/21/2022]
Abstract
Modern pinnipeds (true and eared seals) employ two radically different swimming styles, with true seals (phocids) propelling themselves primarily with their hindlimbs, whereas eared seals (otariids) rely on their wing-like foreflippers.1,2 Current explanations of this functional dichotomy invoke either pinniped diphyly3-5 or independent colonizations of the ocean by related but still largely terrestrial ancestors.6-8 Here, we show that pinniped swimming styles form an anatomical, functional, and behavioral continuum, within which adaptations for forelimb swimming can arise directly from a hindlimb-propelled bauplan. Within phocids, southern seals (monachines) show a convergent trend toward wing-like, hydrodynamically efficient forelimbs used for propulsion during slow swimming, turning, bursts of speed, or when initiating movement. This condition is most evident in leopard seals, which have well-integrated foreflippers with little digit mobility, reduced claws, and hydrodynamic characteristics comparable to those of forelimb-propelled otariids. Using monachines as a model, we suggest that the last common ancestor of modern seals may have been hindlimb-propelled and aquatically adapted, thus resolving the apparent contradiction at the root of pinniped evolution.
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Affiliation(s)
- David P Hocking
- School of Biological Sciences, Monash University, Clayton, VIC 3800, Australia; Geosciences, Museums Victoria, Melbourne, VIC 3001, Australia; Tasmanian Museum and Art Gallery, Hobart 7000, Australia.
| | - Felix G Marx
- Museum of New Zealand Te Papa Tongarewa, Wellington 6011, New Zealand; Department of Geology, University of Otago, Dunedin 9054, New Zealand
| | - Shibo Wang
- Department of Mechanical and Aerospace Engineering, Monash University, Clayton, VIC 3800, Australia
| | - David Burton
- Department of Mechanical and Aerospace Engineering, Monash University, Clayton, VIC 3800, Australia
| | - Mark Thompson
- Department of Mechanical and Aerospace Engineering, Monash University, Clayton, VIC 3800, Australia
| | - Travis Park
- Department of Life Sciences, Natural History Museum, London SW7 5BD, UK
| | - Ben Burville
- School of Natural and Environmental Sciences, Newcastle University, Newcastle NE1 7RU, UK
| | - Hazel L Richards
- School of Biological Sciences, Monash University, Clayton, VIC 3800, Australia; Geosciences, Museums Victoria, Melbourne, VIC 3001, Australia
| | - Renae Sattler
- Alaska SeaLife Center, Seward, AK 99664, USA; Alaska Department of Fish and Game, Palmer, AK, USA
| | - James Robbins
- Institute of Marine Science, University of Portsmouth, Portsmouth PO4 9LY, UK
| | | | - Erich M G Fitzgerald
- School of Biological Sciences, Monash University, Clayton, VIC 3800, Australia; Geosciences, Museums Victoria, Melbourne, VIC 3001, Australia
| | - David J Slip
- Taronga Institute of Science and Learning, Taronga Conservation Society Australia, Mosman, NSW 2088, Australia; Department of Biological Sciences, Macquarie University, North Ryde, NSW 2113, Australia
| | - Alistair R Evans
- School of Biological Sciences, Monash University, Clayton, VIC 3800, Australia; Geosciences, Museums Victoria, Melbourne, VIC 3001, Australia
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5
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Lundbäck IC, McDougall FK, Dann P, Slip DJ, Gray R, Power ML. Into the sea: Antimicrobial resistance determinants in the microbiota of little penguins (Eudyptula minor). Infect Genet Evol 2020; 88:104697. [PMID: 33370595 DOI: 10.1016/j.meegid.2020.104697] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Revised: 12/11/2020] [Accepted: 12/22/2020] [Indexed: 12/30/2022]
Abstract
Terrestrial and aquatic birds have been proposed as sentinels for the spread of antimicrobial resistant bacteria, but few species have been investigated specifically in the context of AMR in the marine ecosystem. This study contrasts the occurrence of class 1 integrons and associated antimicrobial resistance genes in wild and captive little penguins (Eudyptula minor), an Australian seabird with local population declines. PCR screening of faecal samples (n = 448) revealed a significant difference in the prevalence of class 1 integrons in wild and captive groups, 3.2% and 44.7% respectively, with genes that confer resistance to streptomycin, spectinomycin, trimethoprim and multidrug efflux pumps detected. Class 1 integrons were not detected in two clinically relevant bacterial species, Klebsiella pneumoniae or Escherichia coli, isolated from penguin faeces. The presence of class 1 integrons in the little penguin supports the use of marine birds as sentinels of AMR in marine environments.
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Affiliation(s)
- Ida C Lundbäck
- Department of Biological Sciences, Faculty of Science and Engineering, Macquarie University, Sydney, Australia
| | - Fiona K McDougall
- Department of Biological Sciences, Faculty of Science and Engineering, Macquarie University, Sydney, Australia
| | - Peter Dann
- Conservation Department, Phillip Island Nature Parks, Victoria, Australia
| | - David J Slip
- Department of Biological Sciences, Faculty of Science and Engineering, Macquarie University, Sydney, Australia; Taronga Conservation Society, Sydney, Australia
| | - Rachael Gray
- Sydney School of Veterinary Science, Faculty of Science, The University of Sydney, Australia
| | - Michelle L Power
- Department of Biological Sciences, Faculty of Science and Engineering, Macquarie University, Sydney, Australia.
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6
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Majelantle TL, Ganswindt A, Jordaan RK, Slip DJ, Harcourt R, McIntyre T. Increased population density and behavioural flexibility of African clawless otters (Aonyx capensis) in specific anthropogenic environments. Urban Ecosyst 2020. [DOI: 10.1007/s11252-020-01068-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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7
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Ladds MA, Salton M, Hocking DP, McIntosh RR, Thompson AP, Slip DJ, Harcourt RG. Using accelerometers to develop time-energy budgets of wild fur seals from captive surrogates. PeerJ 2018; 6:e5814. [PMID: 30386705 PMCID: PMC6204822 DOI: 10.7717/peerj.5814] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2018] [Accepted: 09/22/2018] [Indexed: 11/20/2022] Open
Abstract
Background Accurate time-energy budgets summarise an animal's energy expenditure in a given environment, and are potentially a sensitive indicator of how an animal responds to changing resources. Deriving accurate time-energy budgets requires an estimate of time spent in different activities and of the energetic cost of that activity. Bio-loggers (e.g., accelerometers) may provide a solution for monitoring animals such as fur seals that make long-duration foraging trips. Using low resolution to record behaviour may aid in the transmission of data, negating the need to recover the device. Methods This study used controlled captive experiments and previous energetic research to derive time-energy budgets of juvenile Australian fur seals (Arctocephalus pusillus) equipped with tri-axial accelerometers. First, captive fur seals and sea lions were equipped with accelerometers recording at high (20 Hz) and low (1 Hz) resolutions, and their behaviour recorded. Using this data, machine learning models were trained to recognise four states-foraging, grooming, travelling and resting. Next, the energetic cost of each behaviour, as a function of location (land or water), season and digestive state (pre- or post-prandial) was estimated. Then, diving and movement data were collected from nine wild juvenile fur seals wearing accelerometers recording at high- and low- resolutions. Models developed from captive seals were applied to accelerometry data from wild juvenile Australian fur seals and, finally, their time-energy budgets were reconstructed. Results Behaviour classification models built with low resolution (1 Hz) data correctly classified captive seal behaviours with very high accuracy (up to 90%) and recorded without interruption. Therefore, time-energy budgets of wild fur seals were constructed with these data. The reconstructed time-energy budgets revealed that juvenile fur seals expended the same amount of energy as adults of similar species. No significant differences in daily energy expenditure (DEE) were found across sex or season (winter or summer), but fur seals rested more when their energy expenditure was expected to be higher. Juvenile fur seals used behavioural compensatory techniques to conserve energy during activities that were expected to have high energetic outputs (such as diving). Discussion As low resolution accelerometry (1 Hz) was able to classify behaviour with very high accuracy, future studies may be able to transmit more data at a lower rate, reducing the need for tag recovery. Reconstructed time-energy budgets demonstrated that juvenile fur seals appear to expend the same amount of energy as their adult counterparts. Through pairing estimates of energy expenditure with behaviour this study demonstrates the potential to understand how fur seals expend energy, and where and how behavioural compensations are made to retain constant energy expenditure over a short (dive) and long (season) period.
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Affiliation(s)
- Monique A Ladds
- School of Mathematics and Statistics, Victoria University of Wellington, Wellington, New Zealand.,Marine Predator Research Group, Macquarie University, Sydney, New South Wales, Australia
| | - Marcus Salton
- Marine Predator Research Group, Macquarie University, Sydney, New South Wales, Australia
| | - David P Hocking
- School of Biological Sciences, Monash University, Melbourne, Victoria, Australia
| | - Rebecca R McIntosh
- Marine Predator Research Group, Macquarie University, Sydney, New South Wales, Australia.,Research Department, Phillip Island Nature Parks, Phillip Island, Victoria, Australia
| | | | - David J Slip
- Marine Predator Research Group, Macquarie University, Sydney, New South Wales, Australia.,Taronga Conservation Society Australia, Sydney, New South Wales, Australia
| | - Robert G Harcourt
- Marine Predator Research Group, Macquarie University, Sydney, New South Wales, Australia
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8
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McIntosh RR, Kirkman SP, Thalmann S, Sutherland DR, Mitchell A, Arnould JPY, Salton M, Slip DJ, Dann P, Kirkwood R. Understanding meta-population trends of the Australian fur seal, with insights for adaptive monitoring. PLoS One 2018; 13:e0200253. [PMID: 30183713 PMCID: PMC6124711 DOI: 10.1371/journal.pone.0200253] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2017] [Accepted: 06/22/2018] [Indexed: 11/22/2022] Open
Abstract
Effective ecosystem-based management requires estimates of abundance and population trends of species of interest. Trend analyses are often limited due to sparse or short-term abundance estimates for populations that can be logistically difficult to monitor over time. Therefore it is critical to assess regularly the quality of the metrics in long-term monitoring programs. For a monitoring program to provide meaningful data and remain relevant, it needs to incorporate technological improvements and the changing requirements of stakeholders, while maintaining the integrity of the data. In this paper we critically examine the monitoring program for the Australian fur seal (AFS) Arctocephalus pusillus doriferus as an example of an ad-hoc monitoring program that was co-ordinated across multiple stakeholders as a range-wide census of live pups in the Austral summers of 2002, 2007 and 2013. This 5-yearly census, combined with historic counts at individual sites, successfully tracked increasing population trends as signs of population recovery up to 2007. The 2013 census identified the first reduction in AFS pup numbers (14,248 live pups, -4.2% change per annum since 2007), however we have limited information to understand this change. We analyse the trends at breeding colonies and perform a power analysis to critically examine the reliability of those trends. We then assess the gaps in the monitoring program and discuss how we may transition this surveillance style program to an adaptive monitoring program than can evolve over time and achieve its goals. The census results are used for ecosystem-based modelling for fisheries management and emergency response planning. The ultimate goal for this program is to obtain the data we need with minimal cost, effort and impact on the fur seals. In conclusion we identify the importance of power analyses for interpreting trends, the value of regularly assessing long-term monitoring programs and proper design so that adaptive monitoring principles can be applied.
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Affiliation(s)
- Rebecca R. McIntosh
- Research Department, Phillip Island Nature Parks, Cowes, Victoria, Australia
- * E-mail:
| | - Steve P. Kirkman
- Department of Environmental Affairs, Oceans and Coasts Research, Victoria and Alfred Waterfront, Cape Town, South Africa
- Animal Demography Unit, Department of Biological Sciences, University of Cape Town, Cape Town, South Africa
| | - Sam Thalmann
- Department of Primary Industries, Parks, Water and Environment, Hobart, Tasmania, Australia
| | | | - Anthony Mitchell
- Department of Environment, Land, Water and Planning, Orbost, Victoria, Australia
| | - John P. Y. Arnould
- School of Biological and Chemical Sciences, Deakin University, Burwood, Victoria, Australia
| | - Marcus Salton
- Research Department, Phillip Island Nature Parks, Cowes, Victoria, Australia
- Department of Biological Sciences, Macquarie University, North Ryde, New South Wales, Australia
| | - David J. Slip
- Department of Biological Sciences, Macquarie University, North Ryde, New South Wales, Australia
- Taronga Conservation Society Australia, Mosman, New South Wales, Australia
| | - Peter Dann
- Research Department, Phillip Island Nature Parks, Cowes, Victoria, Australia
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9
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Ladds MA, Rosen DAS, Slip DJ, Harcourt RG. Proxies of energy expenditure for marine mammals: an experimental test of "the time trap". Sci Rep 2017; 7:11815. [PMID: 28924150 PMCID: PMC5603582 DOI: 10.1038/s41598-017-11576-4] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2017] [Accepted: 08/23/2017] [Indexed: 11/25/2022] Open
Abstract
Direct measures of energy expenditure are difficult to obtain in marine mammals, and accelerometry may be a useful proxy. Recently its utility has been questioned as some analyses derived their measure of activity level by calculating the sum of accelerometry-based values and then comparing this summation to summed (total) energy expenditure (the so-called “time trap”). To test this hypothesis, we measured oxygen consumption of captive fur seals and sea lions wearing accelerometers during submerged swimming and calculated total and rate of energy expenditure. We compared these values with two potential proxies of energy expenditure derived from accelerometry data: flipper strokes and dynamic body acceleration (DBA). Total number of strokes, total DBA, and submergence time all predicted total oxygen consumption \documentclass[12pt]{minimal}
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\begin{document}$$({\boldsymbol{sV}}{{\boldsymbol{O}}}_{{\boldsymbol{2}}}$$\end{document}(sVO2 ml kg−1). However, both total DBA and total number of strokes were correlated with submergence time. Neither stroke rate nor mean DBA could predict the rate of oxygen consumption (\documentclass[12pt]{minimal}
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\begin{document}$$s\mathop{{\boldsymbol{V}}}\limits^{{\boldsymbol{.}}}{{\boldsymbol{O}}}_{{\boldsymbol{2}}}$$\end{document}sV.O2 ml min−1 kg−1). The relationship of total DBA and total strokes with total oxygen consumption is apparently a result of introducing a constant (time) into both sides of the relationship. This experimental evidence supports the conclusion that proxies derived from accelerometers cannot estimate the energy expenditure of marine mammals.
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Affiliation(s)
- Monique A Ladds
- School of Mathematics and Statistics, Victoria University of Wellington, Wellington, 6012, New Zealand. .,Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, 2113, NSW, Australia.
| | - David A S Rosen
- Marine Mammal Research Unit, Institute for the Oceans and Fisheries, University of British Columbia, 2202 Main Mall, Vancouver, BC V6T 1Z4, Canada
| | - David J Slip
- Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, 2113, NSW, Australia.,Taronga Conservation Society Australia, Bradley's Head Road, Mosman, 2088, NSW, Australia
| | - Robert G Harcourt
- Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, 2113, NSW, Australia
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10
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Abstract
The energy expenditure of free-living fur seals and sea lions is difficult to measure directly, but may be indirectly derived from flipper stroke rate. We filmed 10 captive otariids swimming with accelerometers either attached to a harness (Daily Diary: sampling frequency 32 Hz, N=4) or taped to the fur (G6a+: 25 Hz, N=6). We used down sampling to derive four recording rates from each accelerometer (Daily Diary: 32, 16, 8, 4 Hz; G6a+: 25, 20, 10, 5 Hz). For each of these sampling frequencies, we derived 20 combinations of two parameters (RMW, the window size used to calculate the running mean; and m, the minimum number of points smaller than a local maxima used to detect a peak) from the dynamic acceleration of x, z and x+z, to estimate stroke rate from the accelerometers. These estimates differed by up to ∼20% in comparison to the actual number of foreflipper strokes counted from videos. RMW and the choice of axis used to make the calculations (x, z or x+z) had little effect on the overall differences, though the variability was reduced when using x+z. The best m varied depending on the axis used and the sampling frequency; a larger m was needed for higher sampling frequencies. This study demonstrates that when parameters are appropriately tuned, accelerometers are a simple yet valid tool for estimating the stroke rates of swimming otariids. Summary: Accelerometer data collected from captive fur seals and sea lions swimming were used to determine the best method for processing raw data to achieve the highest accuracy of stroke rate.
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Affiliation(s)
- Monique A Ladds
- Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, NSW 2113, Australia .,School of Mathematics and Statistics, Victoria University of Wellington, Wellington 6140, New Zealand
| | - David A Rosen
- Marine Mammal Research Unit, Department of Zoology, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
| | - David J Slip
- Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, NSW 2113, Australia.,Taronga Conservation Society Australia, Bradley's Head Road, Mosman, NSW 2088, Australia
| | - Robert G Harcourt
- Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, NSW 2113, Australia
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11
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Ladds MA, Slip DJ, Harcourt RG. Intrinsic and extrinsic influences on standard metabolic rates of three species of Australian otariid. Conserv Physiol 2017; 5:cow074. [PMID: 28852504 PMCID: PMC5570045 DOI: 10.1093/conphys/cow074] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/30/2016] [Revised: 12/15/2016] [Accepted: 01/09/2017] [Indexed: 06/07/2023]
Abstract
The study of marine mammal energetics can shed light on how these animals might adapt to changing environments. Their physiological potential to adapt will be influenced by extrinsic factors, such as temperature, and by intrinsic factors, such as sex and reproduction. We measured the standard metabolic rate (SMR) of males and females of three Australian otariid species (two Australian fur seals, three New Zealand fur seals and seven Australian sea lions). Mean SMR ranged from 0.47 to 1.05 l O2 min-1, which when adjusted for mass was from 5.33 to 7.44 ml O2 min-1 kg-1. We found that Australian sea lion mass-specific SMR (sSMR; in millilitres of oxygen per minute per kilogram) varied little in response to time of year or moult, but was significantly influenced by sex and water temperature. Likewise, sSMR of Australian and New Zealand fur seals was also influenced by sex and water temperature, but also by time of year (pre-moult, moult or post-moult). During the moult, fur seals had significantly higher sSMR than at other times of the year, whereas there was no discernible effect of moult for sea lions. For both groups, females had higher sSMR than males, but sea lions and fur seals showed different responses to changes in water temperature. The sSMR of fur seals increased with increasing water temperature, whereas sSMR of sea lions decreased with increasing water temperature. There were no species differences when comparing animals of the same sex. Our study suggests that fur seals have more flexibility in their physiology than sea lions, perhaps implying that they will be more resilient in a changing environment.
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Affiliation(s)
- Monique A. Ladds
- Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, NSW 2113, Australia
| | - David J. Slip
- Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, NSW 2113, Australia
- Taronga Conservation Society Australia, Bradley's Head Road, Mosman, NSW 2088, Australia
| | - Robert G. Harcourt
- Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, NSW 2113, Australia
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Ladds MA, Thompson AP, Slip DJ, Hocking DP, Harcourt RG. Seeing It All: Evaluating Supervised Machine Learning Methods for the Classification of Diverse Otariid Behaviours. PLoS One 2016; 11:e0166898. [PMID: 28002450 PMCID: PMC5176164 DOI: 10.1371/journal.pone.0166898] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2016] [Accepted: 11/04/2016] [Indexed: 12/02/2022] Open
Abstract
Constructing activity budgets for marine animals when they are at sea and cannot be directly observed is challenging, but recent advances in bio-logging technology offer solutions to this problem. Accelerometers can potentially identify a wide range of behaviours for animals based on unique patterns of acceleration. However, when analysing data derived from accelerometers, there are many statistical techniques available which when applied to different data sets produce different classification accuracies. We investigated a selection of supervised machine learning methods for interpreting behavioural data from captive otariids (fur seals and sea lions). We conducted controlled experiments with 12 seals, where their behaviours were filmed while they were wearing 3-axis accelerometers. From video we identified 26 behaviours that could be grouped into one of four categories (foraging, resting, travelling and grooming) representing key behaviour states for wild seals. We used data from 10 seals to train four predictive classification models: stochastic gradient boosting (GBM), random forests, support vector machine using four different kernels and a baseline model: penalised logistic regression. We then took the best parameters from each model and cross-validated the results on the two seals unseen so far. We also investigated the influence of feature statistics (describing some characteristic of the seal), testing the models both with and without these. Cross-validation accuracies were lower than training accuracy, but the SVM with a polynomial kernel was still able to classify seal behaviour with high accuracy (>70%). Adding feature statistics improved accuracies across all models tested. Most categories of behaviour -resting, grooming and feeding—were all predicted with reasonable accuracy (52–81%) by the SVM while travelling was poorly categorised (31–41%). These results show that model selection is important when classifying behaviour and that by using animal characteristics we can strengthen the overall accuracy.
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Affiliation(s)
- Monique A. Ladds
- Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, New South Wales, Australia
- * E-mail:
| | - Adam P. Thompson
- Digital Network, Australian Broadcasting Corporation (ABC), Sydney, New South Wales, Australia
| | - David J. Slip
- Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, New South Wales, Australia
- Taronga Conservation Society Australia, Bradley's Head Road, Mosman, New South Wales, Australia
| | - David P. Hocking
- School of Biological Sciences, Monash University, Melbourne, Australia
- Geosciences, Museum Victoria, Melbourne, Australia
| | - Robert G. Harcourt
- Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, New South Wales, Australia
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Ladds MA, Slip DJ, Harcourt RG. Swimming metabolic rates vary by sex and development stage, but not by species, in three species of Australian otariid seals. J Comp Physiol B 2016; 187:503-516. [PMID: 27803974 DOI: 10.1007/s00360-016-1046-5] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2016] [Revised: 10/12/2016] [Accepted: 10/20/2016] [Indexed: 11/28/2022]
Abstract
Physiology may limit the ability for marine mammals to adapt to changing environments. Depth and duration of foraging dives are a function of total available oxygen stores, which theoretically increase as animals grow, and metabolic costs. To evaluate how physiology may influence the travelling costs for seals to foraging patches in the wild, we measured metabolic rates of a cross-section of New Zealand fur seals, Australian fur seals and Australian sea lions representing different foraging strategies, development stages, sexes and sizes. We report values for standard metabolic rate, active metabolic rate (obtained from submerged swimming), along with estimates of cost of transport (COT), measured via respirometry. We found a decline in mass-specific metabolic rate with increased duration of submerged swimming. For most seals mass-specific metabolic rate increased with speed and for all seals mass-specific COT decreased with speed. Mass-specific metabolic rate was higher for subadult than adult fur seals and sea lions, corresponding to an overall higher minimum COT. Some sex differences were also apparent, such that female Australian fur seals and Australian sea lions had higher mass-specific metabolic rates than males. There were no species differences in standard or active metabolic rates for adult males or females. The seals in our study appear to operate at their physiological optimum during submerged swimming. However, the higher metabolic rates of young and female fur seals and sea lions may limit their scope for increasing foraging effort during times of resource limitation.
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Affiliation(s)
- Monique A Ladds
- Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, NSW, 2113, Australia.
| | - David J Slip
- Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, NSW, 2113, Australia.,Taronga Conservation Society Australia, Bradley's Head Road, Mosman, NSW, 2088, Australia
| | - Robert G Harcourt
- Marine Predator Research Group, Department of Biological Sciences, Macquarie University, North Ryde, NSW, 2113, Australia
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Hindell MA, McConnell BJ, Fedak MA, Slip DJ, Burton HR, Reijnders PJH, McMahon CR. Environmental and physiological determinants of successful foraging by naive southern elephant seal pups during their first trip to sea. CAN J ZOOL 1999. [DOI: 10.1139/z99-154] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The ability to forage successfully during their first trip to sea is fundamental to the ultimate survival of newly weaned southern elephant seals (Mirounga leonina). However, there is considerable variation in the body mass and fat content of seal pups at weaning, which results in some individuals having larger energy and oxygen stores than others, which may confer advantages on them. The diving behaviour of 21 newly weaned seals was studied using satellite relayed data loggers. Seals were captured at Macquarie Island in December 1995 and 1996, approximately 4 weeks after weaning. Two groups of seals were specifically targeted: a heavy group from the top quartile of weaning masses (n = 6) and a light group from the lower quartile (n = 15). Most of the seals made dives in excess of 100 m depth and 5 min before final departure from the island. However, for the first 60-80 d, all of the seals exhibited behaviour quite distinct from the patterns reported for older conspecifics, and made relatively shallow (100 ± 39 m; mean ± SD) and short (5.7 ± 1.23 min) dives. During this time the seals spent 74.3 ± 12.6% of each day diving, and the depth of the dives did not follow any diurnal pattern. The diving behaviour of all seals changed abruptly when they started on their return to land. During this time their behaviour was more like that of adults: they made deeper (159 ± 9 m) and longer dives (9.01 ± 1.69 min) than previously, and the dives showed a strong diurnal pattern in depth. There is no obvious explanation for this change in behaviour, although its abrupt nature suggests that it is unlikely to have been due to physiological changes in the seals. The size of the seals at weaning was an important influence on diving behaviour. Heavy weaners made significantly deeper (130 ± 40 m) and longer dives (7.36 ± 0.55 min) than light weaners (88 ± 32 m and 5.04 ± 0.64 min, respectively). This indicates that smaller seals are constrained to some extent by their physiological capabilities, which perhaps requires some individuals to adopt different foraging strategies.
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Abstract
The use of doxapram to stimulate breathing was examined in southern elephant seals chemically restrained with ketamine and xylazine. Animals which were breathing spontaneously received doxapram (approximately 0.5, 1, 2, or 4 mg/kg) or saline into the extradural intravertebral vein. Doxapram caused a dose-dependent increase in the depth and rate of respiration which began within one minute, peaked after two minutes and lasted for up to five minutes. A dose of 2 mg/kg appeared to be safe and effective for the stimulation of respiration, while 4 mg/kg caused arousal and shaking. Doxapram (2 mg/kg) was tested on 14 occasions in animals which had developed apnoea during chemical restraint. Doxapram had no effect when administered into the extradural intravertebral vein and appeared to be of more benefit when administered directly into the lungs via an endotracheal tube, but it was not effective in all cases. There was evidence to suggest that the endotracheal tube prevented some of the animals from breathing. The effect of intubation and endotracheal doxapram administration was therefore examined in 19 apnoeic and 31 spontaneously breathing seals. Intubation induced apnoea in animals at low levels of chemical restraint and endotracheal doxapram was unreliable for the stimulation of breathing.
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Affiliation(s)
- R Woods
- School of Pharmacy, University of Tasmania, Hobart, Tasmania
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Abstract
Stomach contents were lavaged from 76 southern elephant seals (Mirounga leonina) at Heard Island between July 1992 and March 1993. Eighty-six percent of stomachs contained cephalopods of 17 species. Numerically the most important was Psychroteuthis glacialis (21.1%), and from estimated biomass the most important was Kondakovia longimana (40.4%). Three other species were also common prey: Moroteuthis knipovitchi (19.4% by estimated biomass), Moroteuthis ingens (13.0%), and Alluroteuthis antarcticus (10.2%). Sixty-six percent of stomachs contained fish remains, and four species, Dissostichus eleginoides, Electrona carlsbergi, E. antarctica, and Gymnoscopelus nicholsi, were identified from otoliths. The diet of adults differed from that of juveniles, particularly pups in their first year. Martialia hyadesi was the most important prey of juveniles and represented 57.1% of estimated biomass consumed. Furthermore, smaller seals ate smaller squid. The species and size of cephalopods eaten by southern elephant seals are similar to those of other Southern Ocean predators, particularly some beaked whales.
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Hindell MA, Slip DJ, Burton HR, Bryden MM. Physiological implications of continuous, prolonged, and deep dives of the southern elephant seal (Mirounga leonina). CAN J ZOOL 1992. [DOI: 10.1139/z92-055] [Citation(s) in RCA: 114] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The diving behaviour of 14 adult southern elephant seals was investigated using time depth recorders. Each of the seals performed some dives that were longer than its theoretical aerobic dive limit. Forty-four percent of all dives made by post-moult females exceeded the calculated limit compared with 7% of those made by postbreeding females and less than 1% of those made by adult males. The extended dives displayed characteristics that suggested that they were predominantly foraging dives, although some were apparently rest dives. Dives longer than the calculated aerobic limits often occurred in bouts; the longest consisted of 63 consecutive dives and lasted 2 days. Postmoult females performed longer bouts of extended dives than postbreeding females. Extended surface periods (longer than 30 min) were not related to the occurrence of extended dives or bouts of extended dives. The possible physiological mechanisms that permit such prolonged continuous dives are discussed. Southern elephant seals may increase the aerobic capacity of dives by lowering their metabolism to approximately 40% of the resting metabolic rate on long dives. There is substantial interseal variability in the methods used to cope with long dives. Some animals appear to use physiological strategies that allow them to prolong the time available to them at the bottom of a dive, while others use alternative strategies that may limit the time available at the bottom of their dives.
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Slip DJ, Gales NJ, Burton HR. Body-Mass Loss, Utilization of Blubber and Fat, and Energetic Requirements of Male Southern Elephant Seals, Mirounga-Leonina, During the Molting Fast. AUST J ZOOL 1992. [DOI: 10.1071/zo9920235] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The energetic requirements of male southern elephant seals, Mirounga leonina, were estimated from mass loss, and changes in blubber mass determined by ultrasound in 11 seals over the moulting fast. Mean rate of mass loss was 9.60+/-2.25 kg day-1 or 6.46+/-0.77 g kg-1 day-1, with about 63% of this lost as fat. Blubber was depleted by about 48% over the moulting period. The relative distribution of blubber remained unchanged after the moult, and seals lost blubber at similar rates over all areas of the body. Energy expenditure was estimated to be 7.54+/-82 MJ kg-1 over the mean 35.6-day moulting period.
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Slip DJ, Burton HR, Gales NJ. Determining Blubber Mass in the Southern Elephant Seal, Mirounga-Leonina, by Ultrasonic and Isotopic Techniques. AUST J ZOOL 1992. [DOI: 10.1071/zo9920143] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The mass of subcutaneous fat was determined for 14 male southern elephant seals, Mirounga leonina, by a modified version of a previously described ultrasound model (Gales and Burton 1987). The new model took into account fat slumping and was more accurate than the first model. The accuracy of the new technique was assessed by flensing. Total body water was estimated by tritiated-water dilution, and the relationship between total body water and ultrasonically determined total blubber mass was established. Predictive relationships for total blubber mass, and the relationship between total blubber mass and total body fat were determined. This study has demonstrated the applicability of ultrasound and isotope-dilution techniques in determining the fat composition in vivo of southern elephant seals.
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Hindell MA, Slip DJ, Burton HR. The Diving Behavior of Adult Male and Female Southern Elephant Seals, Mirounga-Leonina (Pinnipedia, Phocidae). AUST J ZOOL 1991. [DOI: 10.1071/zo9910595] [Citation(s) in RCA: 192] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Over 50 000 individual dive records collected by time-depth recorders were analysed with respect to sex of the seal, time of year and the approximate geographic location of the dive. Six distinct dive types were described on the basis of parameters such as the amount of time spent at the maximum depth of the dive, the rate of ascent and descent, and the general form of the dive profile. These dive types were 'rest' dives, 'travel' dives, 'surface' dives, 'general non-foraging' dives, 'pelagic foraging' dives and 'benthic foraging' dives. The seals spent 90% of their time at sea submerged. Less than 2% of the time was spent on the surface in intervals of more than 10 min. A further 20-30% of the time was spent on the various non-foraging types of dives. Most females performed only 'pelagic foraging' dives, while males performed both 'pelagic' and 'benthic foraging' dives. All the 'benthic foraging' dives occurred in Area 3 (defined by water-temperature data as lying over the Antarctic Continental Shelf) and were 400-500 m deep. 'Pelagic foraging' dives occurred in all three foraging areas and ranged in depth from 200 to 1100 m. These types of dives also exhibited marked diurnal variations in depth, unlike 'benthic foraging' dives. The seals spent 10-20 min at the bottom of each 'foraging' dive, where they generally displayed a series of small changes in depth (wiggles). The size of these 'wiggles' tended to be larger in 'pelagic foraging' dives than in 'benthic foraging' dives. The diving behaviour of southern elephant seals is related to the possible prey they exploit in the Southern Ocean.
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Abstract
One hundred eighty-one female and thirteen postweanling pup southern elephant seals (Mirounga leonina) were sedated using a combination of ketamine hydrochloride and xylazine hydrochloride. Physiological state had a profound effect on response of the animals to sedation. Physiologically stressed postlactation and postpartum cows had significantly longer periods of sedation than pre-molting females or recently weaned pups. Induction time was not affected by physiological status. Dose rates are recommended for elephant seals in various physiological states.
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Affiliation(s)
- R Woods
- Antarctic Division, Channel Highway, Kingston, Tasmania, Australia
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Slip DJ, Shine R. Habitat Use, Movements and Activity Patterns of Free-Ranging Diamond Pythons, Morelia-Spilota-Spilota (Serpentes, Boidae) - a Radiotelemetric Study. Wildl Res 1988. [DOI: 10.1071/wr9880515] [Citation(s) in RCA: 50] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Miniature radio transmitters were surgically implanted in 15 adult diamond pythons from two areas
near Sydney, N.S.W., in south-eastern Australia, and the snakes monitored for intervals of 4-32
months. We document patterns of habitat use and movements, and interpret these in terms of the
feeding habits and reproductive biology of the pythons. These snakes were usually sedentary in summer
and autumn, with occasional long movements to new sites. During spring (the mating season), males
moved long distances, often daily. Telemetered pythons were generally diurnal and terrestrial rather than
arboreal. Snakes were most commonly recorded coiled under vegetation which provided filtering cover
(34% of locations). The relative use of different habitats by diamond pythons changed with season.
In summer and autumn, snakes were most frequently in disturbed habitats (such as areas around
houses), where prey are relatively common. In winter the snakes used rocky habitats, especially
sandstone crevices. No winter aggregations were observed. The radio-tracked snakes had large (up
to 124 ha), well-defined but overlapping home ranges, and these varied significantly between sexes and
among seasons. Detailed analysis of python movements shows that at least two assumptions of many
home-range analyses (normally distributed data and adequacy of small sample sizes) are invalid for
our study.
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