New tools for calibrating diffraction setups

New calibration tools in the pyFAI suite for processing scattering experiments acquired with area detectors are presented. These include a new graphical user interface for calibrating the detector position in a scattering experiment performed with a fixed large area detector, as well as a library to be used in Jupyter notebooks for calibrating the motion of a detector on a goniometer arm (or any other moving table) to perform diffraction experiments.

160 Increasing gonadotrophin-releasing hormone dose at initiation of a 5-day CO-Synch protocol increases ovulatory response but not fertility in yearling beef heifers

Heifers typically have a reduced ovulation rate following gonadotrophin-releasing hormone (GnRH) application at initiation of a CO-Synch + controlled internal drug release (CIDR) protocol. Thus, the objective of the present study was to determine whether increasing the dose of GnRH at initiation of a 5-day CO-Synch protocol in beef heifers would improve ovulation rate and therefore increase pregnancies per AI (P/AI). Angus yearling heifers (n=299) at five locations in Ohio (United States) were randomised to receive either 100µg (single; n=149) or 200µg (double; n=150) of gonadorelin acetate (Gonabreed, Parnell) at initiation of a 5-day CO-Synch. On Day −8, heifers received a new intravaginal progesterone-releasing device (1.38g of progesterone; CIDR, Zoetis) and either a single or double dose of GnRH as described above. Five days later (Day −3), devices were removed, 1000µg of cloprostenol sodium (Estroplan, Parnell) was administered, and an oestrous detection patch was applied (Estrotect, Rockway Inc.). Sixty hours after device removal, AI was performed concurrently with the administration of 100µg of GnRH. Pregnancy was determined using ultrasonography 35 days after AI. Ovaries from a subset of animals (n=178) were examined on Days −8 and −3 using ultrasonography to determine the presence of corpora lutea (CL) and the size of the largest follicle. Data were analysed using the GLIMMIX procedure of SAS ver. 9.4 (SAS Institute Inc.). Oestrous expression was similar (P=0.50) between heifers treated with a single (49.0%) or double (52.7%) dose of GnRH. Overall, P/AI was similar (P=0.35) between heifers receiving a single (43.6%; 65/149) or double (38.7%; 58/150) dose of GnRH at initiation of the protocol. However, increasing the dose of GnRH resulted in a greater (P=0.04) ovulation rate in heifers in the double-dose group (40.9%; 36/88) compared with those in the single-dose group (26.1%; 23/88). In addition, heifers with a CL at the time of treatment had reduced ovulatory response to GnRH treatment (16.0%) compared with heifers without a CL (53.7%; P=0.001); however, there was no treatment×CL presence interaction (P=0.69). Heifers that did not ovulate to the initial GnRH treatment had a greater (P=0.0008) diameter of the largest follicle on Day −3 compared with heifers that did ovulate (11.4±0.2 vs. 10.0±0.3). Furthermore, heifers that did ovulate after the initial GnRH had greater (P=0.04) P/AI (52.5%) than heifers that did not ovulate (40.2%), and heifers with a CL on Day −8 tended (P=0.07) to have greater P/AI (47.9%) than heifers without a CL (40.2%). In addition, heifers with a CL present on Day −3 had greater (P=0.04) P/AI (48.2%) than heifers without a CL (31.7%). In summary, increasing the dose of GnRH at initiation of a 5-day CO-Synch did not affect fertility to fixed-time AI but enhanced ovulation rate in beef heifers. Furthermore, heifers that did ovulate at initiation of the protocol or that had a CL at device insertion or removal had greater fertility to fixed-time AI. Thus, alternative strategies that maximise ovulation at initiation of the synchronisation protocol are needed.

168 Comparison of different Doppler ultrasound settings for pregnancy diagnosis based on corpus luteum perfusion at 21 days after AI in beef cattle

Colour Doppler ultrasonography of the corpus luteum (CL) can be used for early pregnancy diagnosis to improve reproductive efficiency and increase the use of AI in beef cattle. The objective of the present study was to determine the diagnostic performance of different Doppler ultrasonography settings for pregnancy diagnosis based on CL perfusion at 21 days after fixed-time AI in beef heifers and cows. Yearling Angus-cross heifers (n=25) and suckled Angus-cross cows (n=84) aged 2-13 years were submitted to a 5-day CO-Synch + controlled internal drug release (CIDR) and timed AI at 60 or 72h after CIDR removal for heifers and cows, respectively. Animals were evaluated by a single operator using colour Doppler ultrasonography (Esaote MyLab Delta) at Day 21. Three settings for colour flow mapping (720, 960, and 1500Hz) and one setting for power Doppler (960Hz), which differed in pulse repetition frequency, were evaluated. The other settings remained unchanged with a probe frequency of 6.3MHz, wall filter of 3, and gain of 61. The pregnancy status (pregnant or non-pregnant) of cows and heifers was determined at 21 days following insemination using colour Doppler ultrasonography. Cows and heifers were considered to be pregnant if the CL blood flow area covered >10% of the periphery of the CL and contained at least two colour internal tracts penetrating towards the centre of the CL. Cattle were evaluated using transrectal B-mode ultrasonography on Day 35 to determine actual pregnancy status. Differences between diagnostic performance variables were evaluated using logistic regression, and setting, category (heifer or cow), and the interaction were included as fixed effects. Pregnancies per AI at Day 35 after fixed-time AI were 47.7% (52/109). Sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) for pregnancy diagnosis at Day 21 for each setting are included in Table 1. There were no differences in sensitivity and NPV between settings (P>0.9), category (P>0.9), or the interaction (P>0.9). There was no effect of setting (P>0.5) or category×setting interaction (P>0.8) on specificity and PPV. There was, however, an effect of category (P<0.01). Colour Doppler ultrasonography had less specificity (59.1% compared with 90.2%) and PPV (75% compared with 89.3%) in heifers than in cows. In conclusion, colour Doppler ultrasonography settings that were evaluated did not affect the diagnostic performance for pregnancy diagnosis at Day 21 after AI, although, numerically the colour flow mapping at 960Hz appears to maximise diagnostic accuracy. In addition, the false-positive rate was greater in heifers, which warrants further research. Table 1.Sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) for pregnancy diagnosis for four colour Doppler ultrasound settings (colour flow mapping (CFM) at 720, 960, and 1500Hz and power Doppler (PWD) at 960Hz) at 21 days after fixed-time AI Item CFM720 CFM960 CFM1500 PWD960 Sensitivity,% 100 100 92.3 100 Specificity,% 80.7 87.7 87.7 80.7 PPV,% 82.5 88.1 87.3 82.5 NPV,% 100 100 92.6 100

High-performance Python for crystallographic computing

The Python programming language, combined with the numerical computing library NumPy and the scientific computing library SciPy, has become the de facto standard for scientific computing in a variety of fields. This popularity is mainly due to the ease with which a Python program can be written and executed (easy syntax, dynamical typing, no compilation etc.), coupled with the existence of a large number of specialized third-party libraries that aim to lift all the limitations of the raw Python language. NumPy introduces vector programming, improving execution speeds, whereas SciPy brings a wealth of highly optimized and reliable scientific functions. There are cases, however, where vector programming alone is not sufficient to reach optimal performance. This issue is addressed with dedicated compilers that aim to translate Python code into native and statically typed code with support for the multi-core architectures of modern processors. In the present article it is shown how these approaches can be efficiently used to tackle different problems, with increasing complexity, that are relevant to crystallography: the 2D Laue function, scattering from a strained 2D crystal, scattering from 3D nanocrystals and, finally, diffraction from films and multilayers. For each case, detailed implementations and explanations of the functioning of the algorithms are provided. Different Python compilers (namely NumExpr, Numba, Pythran and Cython) are used to improve performance and are benchmarked against state-of-the-art NumPy implementations. All examples are also provided as commented and didactic Python (Jupyter) notebooks that can be used as starting points for crystallographers curious to enter the Python ecosystem or wishing to accelerate their existing codes.

Real-time diffraction computed tomography data reduction

Diffraction imaging is an X-ray imaging method which uses the crystallinity information (cell parameter, orientation) as a signal to create an image pixel by pixel: a pencil beam is raster-scanned onto a sample and the (powder) diffraction signal is recorded by a large area detector. With the flux provided by third-generation synchrotrons and the speed of hybrid pixel detectors, the acquisition speed of these experiments is now limited by the transfer rate to the local storage as the data reduction can hardly be performed in real time. This contribution presents the benchmarking of a typical data analysis pipeline for a diffraction imaging experiment like the ones performed at ESRF ID15a and proposes some disruptive techniques to decode CIF binary format images using the computational power of graphics cards to be able to perform data reduction in real time.

Magnetic anisotropy energies of M–Fe wires (M = V–Co) on vicinal Cu(111)

One-dimensional transition metal (TM)-Fe nanowires of single-atom width can be formed on a stepped Cu(111) surface.

Fusionless surgery in early-onset scoliosis

BACKGROUND

Surgical treatment of early-onset scoliosis has greatly developed in recent years. Early-onset scoliosis covers a variety of etiologies (idiopathic, neurologic, dystrophic, malformative, etc.) with onset before the age of 5 years. Progression and severity threaten respiratory development and may result in respiratory failure in adulthood. Many surgical techniques have been developed in recent years, aiming to protect spinal and thoracic development.

MATERIAL AND METHODS

Present techniques are based on one of two main principles. The first consists in posterior distraction of the spine in its concavity (single growing rod, or vertical expandable prosthetic titanium rib [VEPTR]), or on either side (dual rod); this requires iterative surgery, for lengthening, unless motorized using energy provided by a magnetic system. The second option is to use spinal growth force to lengthen the assembly; these techniques (Luque Trolley, Shilla), using a sliding assembly, are known as growth guidance.

RESULTS

These techniques are effective in controlling early scoliotic deformity, and to some extent restore spinal growth. However, they show a high rate of complications: infection, rod breakage, spinal fixation pull out and, above all, progressive spinal stiffness, reducing long-term efficacy. Respiratory gain is harder to assess, as thoracic expansion does not systematically improve respiratory function, particularly due to impaired compliance of the thoracic cage.

Why do the [PhSiO1.5]8,10,12 cages self-brominate primarily in the ortho position? Modeling reveals a strong cage influence on the mechanism

(PhSiO_1.5)_8,10,12 cages are bulky, electron withdrawing like CF₃; yet self-brominate (60 °C), favoring ortho substitution: PhT₈ (≈85%), PhT₁₀ (≈75%) and PhT₁₂ (60%).

Trans-interfacial polymerization and matter transport processes in epoxy-alumina nanocomposites visualized by scanning Brillouin microscopy

The structural developments in the vicinity of the interface between the reactants of an epoxy are investigated using time- and space-resolved scanning Brillouin microscopy. The hypersonic profile across the phase boundary evolves with strong spatial asymmetry and exhibits erratic behavior within the resin-rich region, which is attributed to a complex interplay between matter transport, dissolution, polymerization, and molecular unravelling process. The presence of alumina nanoparticles in the resin changes the character of these matter transport and reaction processes significantly. On the one hand, the nanoparticles act as transport barriers, hindering the mixing of the reactive components; on the other hand they seem to have a catalytic influence on the epoxy polymerization under certain circumstances. Their transport against gravity is tentatively attributed to gradients in surface tension.

Entropic phase separation in polymer-microemulsion networks

We study theoretically a model system of a transient network of microemulsion droplets connected by telechelic polymers and explain recent experimental findings. Despite the absence of any specific interactions between either the droplets or polymer chains, we predict that as the number of polymers per drop is increased, the system undergoes a first-order phase separation into a dense, highly connected phase, in equilibrium with dilute droplets, decorated by polymer loops. The phase transition is purely entropic and is driven by the interplay between the translational entropy of the drops and the configurational entropy of the polymer connections between them. Because it is dominated by entropic effects, the phase behavior of the system is extremely robust and is independent of the detailed properties of either polymers or drops.

Relative effects of carbonic anhydrase infusion or inhibition on carbon dioxide transport and acid-base status in the sea lamprey Petromyzon marinus following exercise

In vivo experiments were carried out to determine the relative effects of carbonic anhydrase (CA) infusion or inhibition on carbon dioxide (CO2) transport and acid-base status in the arterial and venous blood of sea lampreys recovering from exhaustive exercise. Infusion of CA into the extracellular fluid did not significantly affect CO2 transport or acid-base status in exercised lampreys. In contrast, infusion of the CA inhibitor acetazolamide resulted in a respiratory acidosis in the blood of recovering lampreys. In acetazolamide-treated lampreys, the post-exercise extracellular pH (pHe) of arterial blood was significantly lower than that in the saline-infused (control) lampreys. The calculated arterial and venous partial pressure of carbon dioxide (PCO2) and the total CO2 concentration in whole blood (CCO2wb) and red blood cells (CCO2rbc) during recovery in the acetazolamide-infused lampreys were also significantly greater than those values in the saline-infused control lampreys. These results suggest that the CO2 reactions in the extracellular compartment of lampreys may already be in equilibrium and that the access of plasma bicarbonate to CA is probably not the sole factor limiting CO2 transport in these animals. Furthermore, endogenous red blood cell CA clearly has an important role in CO2 transport in exercising lampreys.

Psychiatric and developmental disorders in families of children with attention-deficit hyperactivity disorder

OBJECTIVE

To evaluate whether a pediatric family history obtained via a brief parent interview would reveal a high prevalence of psychiatric and developmental disorders in the family members of children with attention-deficit hyperactivity disorder (ADHD) compared with a group of children with another chronic developmental disability, Down syndrome (DS).

DESIGN

A controlled cross-sectional group comparison study.

SETTING

An interdisciplinary hyperactivity and learning problem clinic and a DS clinic located in a large, urban tertiary care teaching hospital in Chicago, Ill.

PARTICIPANTS

A total of 140 children with ADHD and 163 children with DS of comparable socioeconomic status.

MEASURES

Using a screening questionnaire and parent interview, the development pediatricians obtained a family history.

RESULTS

By parent report, children with ADHD were significantly more likely than the control children with DS to have a parent affected by alcoholism (P = .007), other drug abuse (P < .001), depression (P < .001), delinquency (P < .001), learning disabilities (P < .001), and ADHD (P < .001). Similar patterns were evidenced in other first- and second-degree relatives.

CONCLUSIONS

The high reported frequency of psychiatric and developmental disorders in the families of children with ADHD requires that the treating clinician explore the area of family psychiatric and developmental history and use the findings to formulate a comprehensive treatment plan that includes anticipatory guidance and psychosocial intervention.

Gastroesophageal reflux after repair of congenital diaphragmatic hernia

Seventy-four survivors of congenital diaphragmatic hernia (CDH) repair were reviewed for gastroesophageal reflux (GER). Twenty-nine patients had a prenatal diagnosis of CDH, 31 had the diagnosis established during the first 60 minutes of life, and 14 had a late diagnosis. Fifty-seven of the 60 patients with a prenatal diagnosis or diagnosis at birth had their CDH repaired during the first 24 hours of life. Thirty-six of the 37 patients with clinical signs of GER and 10 patients without typical clinical signs had documented GER. The overall incidence of GER was 62% (46 of 74). The 46 comprised 22 of the 29 patients (75.8%) with a prenatal diagnosis of CDH, 21 of the 31 (67.7%) with a diagnosis at birth, and 3 of the 14 with a late diagnosis. Eleven patients had surgical treatment of GER. A significant correlation was found between GER and the preoperative thoracic position of the stomach (32 v 8, GER+ v GER-; P < .01) and GER and the prenatal diagnosis of CDH (22 v 7, GER+ v GER-; P < .01). Duration of artificial ventilation (68.97 +/- 15.33 days v 14.14 +/- 3.89 days, GER+ v GER-; P < .005) and duration of hospitalization (22.04 +/- 3.59 weeks v 3.9 +/- 0.88 weeks, GER+ v GER-; P < .0003) were significantly longer for the patients with pathological GER. To decrease the morbidity related to GER, we propose using diaphragmatic patches during hernia repair to lower the strain on the crus, and using parietal patches to lower intraabdominal pressure after reintroduction of the herniated viscera.

EFFECTS OF ENVIRONMENTAL TEMPERATURE ON THE METABOLIC AND ACID-BASE RESPONSES OF RAINBOW TROUT TO EXHAUSTIVE EXERCISE

In vivo experiments were conducted to determine how the physiological response to exhaustive exercise in rainbow trout (Oncorhynchus mykiss) is affected by environmental temperature. The white muscle acid&shy;base status (e.g. pH, PCO2, HCO3- and deltaH+m) and metabolite (e.g. lactate, phosphocreatine, ATP and glycogen) content, and the acid&shy;base status and lactate concentrations in the blood, were measured at rest and during recovery from burst exercise in rainbow trout acclimated to either 5 or 18 &deg;C. Trout acclimated to the warmer temperature had higher resting levels of white muscle phosphocreatine (PCr) and also utilized a greater proportion of their muscle ATP and glycogen stores during burst activity compared with trout acclimated to the colder temperature. Recovery of muscle PCr and glycogen levels was independent of acclimation temperature, but muscle ATP levels recovered faster at 18 &deg;C. Exhaustive exercise resulted in a similar lactacidosis in the muscle of trout acclimated to either temperature. In contrast, temperature had a marked influence on the lactacidosis in the blood. Blood lactate and metabolic proton concentrations following exercise were about twofold greater in fish acclimated to 18 &deg;C than in fish acclimated to 5 &deg;C. Despite the more severe acidosis and the greater lactate accumulation in the plasma of fish acclimated to warmer temperatures, the time required for recovery of these variables was similar to that at 5 &deg;C. Taken together, these results suggest that acclimation temperature does not significantly affect anaerobic capacity in rainbow trout, but may account for much of the documented variability in the dynamics of the lactacidosis in blood following exhaustive exercise in fish.

Combined anterior and posterior convex epiphysiodesis for progressive congenital scoliosis in children aged < or = 5 years

Six patients aged < or = 5 years with congenital scoliosis due to vertebral malformation were treated by anterior and posterior epiphysiodesis of the convexity. In all cases the pattern of deformity was a kyphoscoliosis. The average age at operation was 3 years 6 months, average follow-up was 4 years 6 months, and average preoperative angles were 42 degrees in the frontal and 36 degrees in the sagittal plane. The fusion included the malformative zone and the superior and inferior adjacent vertebrae. Two patients had a fusion effect, three patients had a true epiphysiodesis effect, and one patient had a postoperative progression of the deformity. Epiphysiodesis of the convexity is a treatment proper for the growing period, allowing the child either to reach skeletal maturity without needing further treatment or to achieve an adequate torso height to finish the treatment with a classical vertebral arthrodesis.

[Effect of gamma rays on blood forms of Trypanosoma cruzi. Experimental study in mice]

Amostras de sangue de animais infectados com cepa Y de Trypanosoma cruzi foram submetidas, respectivamente, a 200 e 300 krad de radiação gama. Para verificar a eficácia do método na eliminação do parasita, o material foi inoculado em camundongos e os parâmetros utilizados na avaliação foram: parasitemia, cultura, xenodiagnóstico, subinoculação, reinoculação com cepa virulenta e exame anátomo-patológico das vísceras. Os sangues expostos às duas diferentes intensidades de radiação e inoculados em dois períodos após o processo, mostraram-se inócuos quanto a capacidade de produzir infecção nos animais

Intra-hepatic percutaneous deposition of radioactive xenon (133Xe) as a means of measuring hepatic blood flow

Percutaneous deposition of radioactive xenon in the hepatic parenchyma is suggested as a technique for estimating the hepatic blood flow. The authors applied this procedure, which can be repeated at very short intervals, twice in 5 patients suffering from schistosomiasis, and in 6 controls. The percentage of deviation from the mean was calculated by means of two measurements performed in each individual, and was less than 10% in 63.6% of the cases. Higher variations up to 30% can be attributed either to irregular liver perfusion or to oscillations due to emotional distress of the waking subject. The mean value obtained in normal control subjects was 46.7 ml/min per 100 g liver weight. No significant difference was seen between the mean values obtained in patients suffering from schistosomiasis and in the controls. The use of inert gases presents considerable advantages such as rapid diffusion and immediate elimination. However, the varying degree of fatty degeneration with its corresponding changes in the distribution coefficient between gas and tissue, restricts the use of this method in hepatic disorders.

[Chronic digestive loss of plasma proteins evaluated with 51Cr-albumin in Billroth I and II gastrectomized patients]

The digestive clearance of albumin 51Cr was determined in patients submitted to gastrectomy due to peptic ulcer, 6 to 18 months after surgery. Patients were of both sexes, with ages varying from 24 to 70 years. Reconstruction after resection was according to Billroth I and II techniques (groups B and C). The group of control (group A) presented no digestive illness. Each group was represented by 10 individuals. The mean value and respective standard derivation for each group was respectively: Group A: 16,4 +/- 4,6; Group B: 22,0 +/- 8,1; Group C: 35,8 +/- 14,4. Comparing the mean values according to the Tukey test, significance was observed at the alpha = 0.05 level between A and C groups and B and C ones.

Plasma insulin disappearance curve after intravenous insulin injection in human hyperthyroidism

The disappearance curves of plasma insulin after intravenous injection of unlabelled pork insulin was studied in nine young female hyperthyroid subjects with Graves' disease and eleven young female normal subjects, who served as controls. Comparison of the curves by analysis of variance did not reveal statistical differences between them (F obtained = 2.8, F F 0.05 = 4.41), implying that there was no significant differences in the transference of injected insulin from plasma to the extra-vascular space between hyper- and euthyroid subjects. The results may suggest that the metabolism of insulin is not appreciably affected in hyperthyroidism.