1
|
Cho B, Shin M, Chang E, Son S, Shin I, Shim J. S-nitrosylation-triggered unfolded protein response maintains hematopoietic progenitors in Drosophila. Dev Cell 2024; 59:1075-1090.e6. [PMID: 38521056 DOI: 10.1016/j.devcel.2024.02.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Revised: 11/27/2023] [Accepted: 02/29/2024] [Indexed: 03/25/2024]
Abstract
The Drosophila lymph gland houses blood progenitors that give rise to myeloid-like blood cells. Initially, blood progenitors proliferate, but later, they become quiescent to maintain multipotency before differentiation. Despite the identification of various factors involved in multipotency maintenance, the cellular mechanism controlling blood progenitor quiescence remains elusive. Here, we identify the expression of nitric oxide synthase in blood progenitors, generating nitric oxide for post-translational S-nitrosylation of protein cysteine residues. S-nitrosylation activates the Ire1-Xbp1-mediated unfolded protein response, leading to G2 cell-cycle arrest. Specifically, we identify the epidermal growth factor receptor as a target of S-nitrosylation, resulting in its retention within the endoplasmic reticulum and blockade of its receptor function. Overall, our findings highlight developmentally programmed S-nitrosylation as a critical mechanism that induces protein quality control in blood progenitors, maintaining their undifferentiated state by inhibiting cell-cycle progression and rendering them unresponsive to paracrine factors.
Collapse
Affiliation(s)
- Bumsik Cho
- Department of Life Science, College of Natural Science, Hanyang University, Seoul 04763, Republic of Korea; Research Institute for Natural Science, Hanyang University, Seoul 04763, Republic of Korea
| | - Mingyu Shin
- Department of Life Science, College of Natural Science, Hanyang University, Seoul 04763, Republic of Korea
| | - Eunji Chang
- Department of Life Science, College of Natural Science, Hanyang University, Seoul 04763, Republic of Korea
| | - Seogho Son
- Department of Life Science, College of Natural Science, Hanyang University, Seoul 04763, Republic of Korea
| | - Incheol Shin
- Department of Life Science, College of Natural Science, Hanyang University, Seoul 04763, Republic of Korea; Research Institute for Natural Science, Hanyang University, Seoul 04763, Republic of Korea; Research Institute for Convergence of Basic Science, Hanyang University, Seoul 04763, Republic of Korea
| | - Jiwon Shim
- Department of Life Science, College of Natural Science, Hanyang University, Seoul 04763, Republic of Korea; Research Institute for Natural Science, Hanyang University, Seoul 04763, Republic of Korea; Research Institute for Convergence of Basic Science, Hanyang University, Seoul 04763, Republic of Korea; Hanyang Institute of Bioscience and Biotechnology, Hanyang University, Seoul 04763, Republic of Korea.
| |
Collapse
|
2
|
Yoon SH, Cho B, Lee D, Kim H, Shim J, Nam JW. Molecular traces of Drosophila hemocytes reveal transcriptomic conservation with vertebrate myeloid cells. PLoS Genet 2023; 19:e1011077. [PMID: 38113249 PMCID: PMC10763942 DOI: 10.1371/journal.pgen.1011077] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2023] [Revised: 01/03/2024] [Accepted: 11/21/2023] [Indexed: 12/21/2023] Open
Abstract
Drosophila hemocytes serve as the primary defense system against harmful threats, allowing the animals to thrive. Hemocytes are often compared to vertebrate innate immune system cells due to the observed functional similarities between the two. However, the similarities have primarily been established based on a limited number of genes and their functional homologies. Thus, a systematic analysis using transcriptomic data could offer novel insights into Drosophila hemocyte function and provide new perspectives on the evolution of the immune system. Here, we performed cross-species comparative analyses using single-cell RNA sequencing data from Drosophila and vertebrate immune cells. We found several conserved markers for the cluster of differentiation (CD) genes in Drosophila hemocytes and validated the role of CG8501 (CD59) in phagocytosis by plasmatocytes, which function much like macrophages in vertebrates. By comparing whole transcriptome profiles in both supervised and unsupervised analyses, we showed that Drosophila hemocytes are largely homologous to vertebrate myeloid cells, especially plasmatocytes to monocytes/macrophages and prohemocyte 1 (PH1) to hematopoietic stem cells. Furthermore, a small subset of prohemocytes with hematopoietic potential displayed homology with hematopoietic progenitor populations in vertebrates. Overall, our results provide a deeper understanding of molecular conservation in the Drosophila immune system.
Collapse
Affiliation(s)
- Sang-Ho Yoon
- Department of Life Science, College of Natural Sciences, Hanyang University, Seoul, Republic of Korea
- Hanyang Institute of Advanced BioConvergence, Hanyang University, Seoul, Republic of Korea
- Hanyang Institute of Bioscience and Biotechnology, Bio-BigData Research Center, Hanyang University, Seoul, Republic of Korea
| | - Bumsik Cho
- Department of Life Science, College of Natural Sciences, Hanyang University, Seoul, Republic of Korea
| | - Daewon Lee
- Department of Life Science, College of Natural Sciences, Hanyang University, Seoul, Republic of Korea
| | - Hanji Kim
- Department of Life Science, College of Natural Sciences, Hanyang University, Seoul, Republic of Korea
| | - Jiwon Shim
- Department of Life Science, College of Natural Sciences, Hanyang University, Seoul, Republic of Korea
- Hanyang Institute of Advanced BioConvergence, Hanyang University, Seoul, Republic of Korea
- Hanyang Institute of Bioscience and Biotechnology, Bio-BigData Research Center, Hanyang University, Seoul, Republic of Korea
- Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, Republic of Korea
| | - Jin-Wu Nam
- Department of Life Science, College of Natural Sciences, Hanyang University, Seoul, Republic of Korea
- Hanyang Institute of Advanced BioConvergence, Hanyang University, Seoul, Republic of Korea
- Hanyang Institute of Bioscience and Biotechnology, Bio-BigData Research Center, Hanyang University, Seoul, Republic of Korea
- Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, Republic of Korea
| |
Collapse
|
3
|
Lindsey B, Hanley C, Reider L, Snyder S, Zhou Y, Bell E, Shim J, Hahn JO, Vignos M, Bar-Kochba E. Accuracy of heart rate measured by military-grade wearable ECG monitor compared with reference and commercial monitors. BMJ Mil Health 2023:e002541. [PMID: 38053265 DOI: 10.1136/military-2023-002541] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Accepted: 10/27/2023] [Indexed: 12/07/2023]
Abstract
INTRODUCTION Physiological monitoring of soldiers can indicate combat readiness and performance. Despite demonstrated use of wearable devices for HR monitoring, commercial options lack desired military features. A newly developed OMNI monitor includes desired features such as long-range secure data transmission. This study investigated the accuracy of the OMNI to measure HR via accuracy of R-R interval duration relative to research-grade ECG and commercial products. METHODS 54 healthy individuals (male/female=37/17, age=22.2±3.6 years, height=173.0±9.1 cm, weight=70.1±11.2 kg) completed a submaximal exercise test while wearing a reference ECG (Biopac) and a randomly assigned chest-based monitor (OMNI, Polar H10, Equivital EQ-02, Zephyr Bioharness 3). All participants also wore two wrist-based photoplethysmography (PPG) devices, Garmin fēnix 6 and Empatica E4. Bland-Altman analyses of agreement, concordance correlation coefficient (CCC) and root-mean-squared error (RMSE) were used to determine accuracy of the OMNI and commercial devices relative to Biopac. Additionally, a linear mixed-effects model evaluated the effects of device and exercise intensity on agreement. RESULTS Chest-based devices showed superior agreement with Biopac for measuring R-R interval compared with wrist-based ones in terms of mean bias, CCC and RMSE, with OMNI demonstrating the best scores on all metrics. Linear mixed-effects model showed no significant main or interaction effects for the chest-based devices. However, significant effects were found for Garmin and Empatica devices (p<0.001) as well as the interaction effects between both Garmin and Empatica and exercise intensity (p<0.001). CONCLUSIONS Chest-based ECG devices are preferred to wrist-based PPG devices due to superior HR accuracy over a range of exercise intensities, with the OMNI device demonstrating equal, if not superior, performance to other commercial ECG monitors. Additionally, wrist-based PPG devices are significantly affected by exercise intensity as they underestimate HR at low intensities and overestimate HR at high intensities.
Collapse
Affiliation(s)
- Bryndan Lindsey
- Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, USA
| | - C Hanley
- Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, USA
| | - L Reider
- Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, USA
| | - S Snyder
- Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, USA
- University of Maryland, College Park, Maryland, USA
| | - Y Zhou
- University of Maryland, College Park, Maryland, USA
| | - E Bell
- University of Maryland, College Park, Maryland, USA
- Towson University, Towson, Maryland, USA
| | - J Shim
- University of Maryland, College Park, Maryland, USA
- Kyung Hee University, Seoul, The Republic of Korea
| | - J-O Hahn
- University of Maryland, College Park, Maryland, USA
| | - M Vignos
- Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, USA
| | - E Bar-Kochba
- Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, USA
| |
Collapse
|
4
|
Shim J, Pavlova AV, Moss RA, MacLean C, Brandie D, Mitchell L, Greig L, Parkinson E, Tzortziou Brown V, Morrissey D, Alexander L, Cooper K, Swinton PA. Patient ratings in exercise therapy for the management of tendinopathy: a systematic review with meta-analysis. Physiotherapy 2023; 120:78-94. [PMID: 37406460 DOI: 10.1016/j.physio.2023.05.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Revised: 04/26/2023] [Accepted: 05/26/2023] [Indexed: 07/07/2023]
Abstract
OBJECTIVE To synthesise exercise therapy intervention data investigating patient rating outcomes for the management of tendinopathy. DESIGN A systematic review and meta-analysis of randomized controlled trials investigating exercise therapy interventions and reporting patient rating outcomes. SETTING Any setting in any country listed as very high on the human development index. PARTICIPANTS People with a diagnosis of any tendinopathy of any severity or duration. INTERVENTIONS Exercise therapy for the management of tendinopathy comprising five different therapy classes: 1) resistance; 2) plyometric; 3) vibration; 4) flexibility, and 5) movement pattern retraining modalities, were considered for inclusion. MAIN OUTCOME MEASURES Outcomes measuring patient rating of condition, including patient satisfaction and Global Rating of Change (GROC). RESULTS From a total of 124 exercise therapy studies, 34 (Achilles: 41%, rotator cuff: 32%, patellar: 15%, elbow: 9% and gluteal: 3%) provided sufficient information to be meta-analysed. The data were obtained across 48 treatment arms and 1246 participants. The pooled estimate for proportion of satisfaction was 0.63 [95%CrI: 0.53-0.73], and the pooled estimate for percentage of maximum GROC was 53 [95%CrI: 38-69%]. The proportion of patients reporting positive satisfaction and perception of change increased with longer follow-up periods from treatment onset. CONCLUSION Patient satisfaction and GROC appear similar and are ranked moderately high demonstrating that patients generally perceive exercise therapies positively. Further research including greater consistency in measurement tools is required to explore and where possible, identify patient- and exercise-related moderating factors that can be used to improve person-centred care. SYSTEMATIC REVIEW REGISTRATION NUMBER PROSPERO ID=CRD42020168187 CONTRIBUTION OF PAPER.
Collapse
Affiliation(s)
- J Shim
- School of Health Sciences, Robert Gordon University, Aberdeen, UK.
| | - A V Pavlova
- School of Health Sciences, Robert Gordon University, Aberdeen, UK
| | - R A Moss
- School of Health Sciences, Robert Gordon University, Aberdeen, UK
| | - C MacLean
- Library Services, Robert Gordon University, Aberdeen, UK
| | - D Brandie
- Sportscotland Institute of Sport, Stirling, UK
| | | | - L Greig
- School of Health Sciences, Robert Gordon University, Aberdeen, UK
| | - E Parkinson
- School of Health Sciences, Robert Gordon University, Aberdeen, UK
| | - V Tzortziou Brown
- Wolfson Institute of Population Health, Queen Mary University of London, UK
| | - D Morrissey
- William Harvey Research Institute, School of Medicine and Dentistry, Queen Mary University of London, London, UK
| | - L Alexander
- School of Health Sciences, Robert Gordon University, Aberdeen, UK
| | - K Cooper
- School of Health Sciences, Robert Gordon University, Aberdeen, UK
| | - P A Swinton
- School of Health Sciences, Robert Gordon University, Aberdeen, UK
| |
Collapse
|
5
|
Cheon Y, Yoon S, Lee JH, Kim K, Kim HJ, Hong SW, Yun YR, Shim J, Kim SH, Lu B, Lee M, Lee S. A Novel Interaction between MFN2/Marf and MARK4/PAR-1 Is Implicated in Synaptic Defects and Mitochondrial Dysfunction. eNeuro 2023; 10:ENEURO.0409-22.2023. [PMID: 37550059 PMCID: PMC10444538 DOI: 10.1523/eneuro.0409-22.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Revised: 06/19/2023] [Accepted: 06/21/2023] [Indexed: 08/09/2023] Open
Abstract
As cellular energy powerhouses, mitochondria undergo constant fission and fusion to maintain functional homeostasis. The conserved dynamin-like GTPase, Mitofusin2 (MFN2)/mitochondrial assembly regulatory factor (Marf), plays a role in mitochondrial fusion, mutations of which are implicated in age-related human diseases, including several neurodegenerative disorders. However, the regulation of MFN2/Marf-mediated mitochondrial fusion, as well as the pathologic mechanism of neurodegeneration, is not clearly understood. Here, we identified a novel interaction between MFN2/Marf and microtubule affinity-regulating kinase 4 (MARK4)/PAR-1. In the Drosophila larval neuromuscular junction, muscle-specific overexpression of MFN2/Marf decreased the number of synaptic boutons, and the loss of MARK4/PAR-1 alleviated the synaptic defects of MFN2/Marf overexpression. Downregulation of MARK4/PAR-1 rescued the mitochondrial hyperfusion phenotype caused by MFN2/Marf overexpression in the Drosophila muscles as well as in the cultured cells. In addition, knockdown of MARK4/PAR-1 rescued the respiratory dysfunction of mitochondria induced by MFN2/Marf overexpression in mammalian cells. Together, our results indicate that the interaction between MFN2/Marf and MARK4/PAR-1 is fine-tuned to maintain synaptic integrity and mitochondrial homeostasis, and its dysregulation may be implicated in neurologic pathogenesis.
Collapse
Affiliation(s)
- Yeongmi Cheon
- Gwangju Center, Korea Basic Science Institute, Gwangju 61751, Korea
- Laboratory of Molecular Biochemistry, Chonnam National University, Gwangju 61186, Korea
- Department of Microbiology and Molecular Biology, Chungnam National University, Daejeon 34134, Korea
| | - Sunggyu Yoon
- Gwangju Center, Korea Basic Science Institute, Gwangju 61751, Korea
- Department of Life Science, College of Natural Science, Hanyang University, Seoul 04763, Korea
| | - Jae-Hyuk Lee
- Gwangju Center, Korea Basic Science Institute, Gwangju 61751, Korea
| | - Kiyoung Kim
- Department of Medical Science, Soonchunhyang University, Asan 31538, Korea
| | - Hyung-Jun Kim
- Dementia Research Group, Korea Brain Research Institute, Daegu 41068, Korea
| | - Sung Wook Hong
- Kimchi Functionality Research Group, World Institute of Kimchi, Gwangju 61755, Korea
| | - Ye-Rang Yun
- Kimchi Functionality Research Group, World Institute of Kimchi, Gwangju 61755, Korea
| | - Jiwon Shim
- Department of Life Science, College of Natural Science, Hanyang University, Seoul 04763, Korea
| | - Sung-Hak Kim
- Laboratory of Molecular Biochemistry, Chonnam National University, Gwangju 61186, Korea
| | - Bingwei Lu
- Department of Pathology, Stanford University School of Medicine, Stanford, California 94305
| | - Mihye Lee
- Soonchunhyang Institute of Medi-Bio Science, Soonchunhyang University, Cheonan 31151, Korea
| | - Seongsoo Lee
- Gwangju Center, Korea Basic Science Institute, Gwangju 61751, Korea
| |
Collapse
|
6
|
Yoo SH, Choi K, Nam S, Yoon EK, Sohn JW, Oh BM, Shim J, Choi MY. Development of Korea Neuroethics Guidelines. J Korean Med Sci 2023; 38:e193. [PMID: 37365727 DOI: 10.3346/jkms.2023.38.e193] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Accepted: 03/07/2023] [Indexed: 06/28/2023] Open
Abstract
BACKGROUND Advances in neuroscience and neurotechnology provide great benefits to humans though unknown challenges may arise. We should address these challenges using new standards as well as existing ones. Novel standards should include ethical, legal, and social aspects which would be appropriate for advancing neuroscience and technology. Therefore, the Korea Neuroethics Guidelines were developed by stakeholders related to neuroscience and neurotechnology, including experts, policy makers, and the public in the Republic of Korea. METHOD The guidelines were drafted by neuroethics experts, were disclosed at a public hearing, and were subsequently revised by opinions of various stakeholders. RESULTS The guidelines are composed of twelve issues; humanity or human dignity, individual personality and identity, social justice, safety, sociocultural prejudice and public communication, misuse of technology, responsibility for the use of neuroscience and technology, specificity according to the purpose of using neurotechnology, autonomy, privacy and personal information, research, and enhancement. CONCLUSION Although the guidelines may require a more detailed discussion after future advances in neuroscience and technology or changes in socio-cultural milieu, the development of the Korea Neuroethics Guidelines is a milestone for the scientific community and society in general for the ongoing development in neuroscience and neurotechnology.
Collapse
Affiliation(s)
- Sang-Ho Yoo
- Department of Medical Humanities and Ethics, Hanyang University College of Medicine, Seoul, Korea
| | - Kyungsuk Choi
- School of Law/Bioethics Policy Studies, Ewha Womans University, Seoul, Korea
| | - Seungmin Nam
- Department of Pre-Medicine, College of Medicine, Ewha Womans University, Seoul, Korea
| | - Ei-Kyung Yoon
- Department of Criminal Justice Policy Research, Korean Institute of Criminology and Justice, Seoul, Korea
| | - Jeong-Woo Sohn
- Department of Medical Science, College of Medicine, Catholic Kwandong University, Gangneung, Korea
| | - Byung-Mo Oh
- Department of Rehabilitation Medicine, Seoul National University College of Medicine, Seoul National University Hospital, Seoul, Korea
| | - Jiwon Shim
- Department of Philosophy, Dongguk University, Seoul, Korea
| | - Min-Young Choi
- Department of Criminal Justice Policy Research, Korean Institute of Criminology and Justice, Seoul, Korea.
| |
Collapse
|
7
|
Iwaya C, Suzuki A, Shim J, Ambrose CG, Iwata J. Autophagy Plays a Crucial Role in Ameloblast Differentiation. J Dent Res 2023:220345231169220. [PMID: 37249312 PMCID: PMC10403961 DOI: 10.1177/00220345231169220] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/31/2023] Open
Abstract
Tooth enamel is generated by ameloblasts. Any failure in amelogenesis results in defects in the enamel, a condition known as amelogenesis imperfecta. Here, we report that mice with deficient autophagy in epithelial-derived tissues (K14-Cre;Atg7F/F and K14-Cre;Atg3F/F conditional knockout mice) exhibit amelogenesis imperfecta. Micro-computed tomography imaging confirmed that enamel density and thickness were significantly reduced in the teeth of these mice. At the molecular level, ameloblast differentiation was compromised through ectopic accumulation and activation of NRF2, a specific substrate of autophagy. Through bioinformatic analyses, we identified Bcl11b, Dlx3, Klk4, Ltbp3, Nectin1, and Pax9 as candidate genes related to amelogenesis imperfecta and the NRF2-mediated pathway. To investigate the effects of the ectopic NRF2 pathway activation caused by the autophagy deficiency, we analyzed target gene expression and NRF2 binding to the promoter region of candidate target genes and found suppressed gene expression of Bcl11b, Dlx3, Klk4, and Nectin1 but not of Ltbp3 and Pax9. Taken together, our findings indicate that autophagy plays a crucial role in ameloblast differentiation and that its failure results in amelogenesis imperfecta through ectopic NRF2 activation.
Collapse
Affiliation(s)
- C Iwaya
- Department of Diagnostic & Biomedical Sciences, The University of Texas Health Science Center at Houston, School of Dentistry, Houston, TX, USA
- Center for Craniofacial Research, The University of Texas Health Science Center at Houston, School of Dentistry, Houston, TX, USA
| | - A Suzuki
- Department of Diagnostic & Biomedical Sciences, The University of Texas Health Science Center at Houston, School of Dentistry, Houston, TX, USA
- Center for Craniofacial Research, The University of Texas Health Science Center at Houston, School of Dentistry, Houston, TX, USA
| | - J Shim
- Department of Diagnostic & Biomedical Sciences, The University of Texas Health Science Center at Houston, School of Dentistry, Houston, TX, USA
- Center for Craniofacial Research, The University of Texas Health Science Center at Houston, School of Dentistry, Houston, TX, USA
| | - C G Ambrose
- Department of Orthopedic Surgery at McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, USA
| | - J Iwata
- Department of Diagnostic & Biomedical Sciences, The University of Texas Health Science Center at Houston, School of Dentistry, Houston, TX, USA
- Center for Craniofacial Research, The University of Texas Health Science Center at Houston, School of Dentistry, Houston, TX, USA
- Pediatric Research Center, The University of Texas Health Science Center at Houston, School of Medicine, Houston, TX, USA
- MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences, Houston, TX, USA
| |
Collapse
|
8
|
Jwa AS, Shim J, Choi S, Eom J, Kim S, Ryu YJ. An XYZ-axis Matrix Approach for the Integration of Neuroscience and Neuroethics. Exp Neurobiol 2023; 32:8-19. [PMID: 36919332 PMCID: PMC10017846 DOI: 10.5607/en22032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Revised: 01/11/2023] [Accepted: 02/07/2023] [Indexed: 03/16/2023] Open
Abstract
The recent, unprecedented advancement in neuroscience has led to new discoveries about the human brain and its function. Yet at the same time, it has spurred novel ethical and regulatory issues, and the field of neuroethics has emerged as an interdisciplinary endeavor to address these issues. Across the globe, extensive efforts have been underway to achieve the integration of neuroscience and Neuroethics, with active engagement not only from academia but also from the government, the public, and industry. However, in some countries, integrating neuroscience and neuroethics has proved to be a particularly challenging task. For example, in South Korea, the government has primarily driven the integration effort, and only a small group of researchers is properly trained for conducting an interdisciplinary evaluation of ethical, legal, social, and cultural implications (ELSCI) of neurotechnology. On the basis of the last few years of experience pursuing a government-funded neuroethics project in South Korea, we developed a new operational framework to provide practical guidance on ELSCI research. This framework consists of the X, Y, and Z axes; the X-axis represents a target neurotechnology, the Y-axis represents different developmental stages of the technology, and the Z-axis represents ELSCI issues that may arise from the development and use of the neurotechnology. Here we also present a step-by-step workflow to apply this matrix framework, from organizing a panel for a target neurotechnology to facilitating stakeholder discussion through public hearings. This framework will enable meaningful integration of neuroscience and neuroethics to promote responsible innovation in neuroscience and neurotechnology.
Collapse
Affiliation(s)
- Anita S Jwa
- Department of Psychology, Stanford University, Stanford, CA 94305, USA
| | - Jiwon Shim
- Department of Philosophy, Dongguk University, Seoul 04620, Korea
| | - Sinu Choi
- Institute of Liberal Art, Pukyoung National University, Busan 48513, Korea
| | - Juhee Eom
- Department of Law, Konkuk University, Chungju 27478, Korea
| | - Soojin Kim
- Division of Communication & Media, Ewha Womans University, Seoul 03760, Korea
| | - Young-Joon Ryu
- Department of Medical Ethics and Medical Humanities, Kangwon National University, Chuncheon 24341, Korea
| |
Collapse
|
9
|
Shim J, Park J, Shin D, Jung Y, Yeo E, Lee J, Lee D. 189 Integrating single-cell and spatial transcriptomics of human hair follicles to define transcriptional signature of follicular dermal papilla. J Invest Dermatol 2022. [DOI: 10.1016/j.jid.2022.09.200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
|
10
|
Yoon S, Shin M, Shim J. Inter-organ regulation by the brain in Drosophila development and physiology. J Neurogenet 2022:1-13. [DOI: 10.1080/01677063.2022.2137162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Affiliation(s)
- Sunggyu Yoon
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul, Republic of Korea
| | - Mingyu Shin
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul, Republic of Korea
| | - Jiwon Shim
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul, Republic of Korea
- Research Institute for Natural Science, Hanyang University, Seoul, Republic of Korea
- Hanyang Institute of Bioscience and Biotechnology, Hanyang University, Seoul, Republic of Korea
| |
Collapse
|
11
|
Park H, Yu HT, Kim TH, Park J, Park JK, Kang KW, Shim J, Kim JB, Choi EK, Park HW, Lee YS, Joung B. Oral anticoagulation therapy in atrial fibrillation patients with advanced chronic kidney disease: CODE-AF Registry. Eur Heart J 2022. [DOI: 10.1093/eurheartj/ehac544.628] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Background and objectives
Advanced chronic kidney disease (CKD), including end-stage renal disease (ESRD) on dialysis, increases thromboembolic risk among patients with atrial fibrillation (AF). This study examined the comparative safety and efficacy of direct-acting oral anticoagulant (DOAC) compared to warfarin or no OAC among AF patients with advanced CKD or ESRD on dialysis.
Methods
Using data from the COmparison study of Drugs for symptom control and complication prEvention of AF (CODE-AF) registry, 260 non-valvular AF patients with advanced CKD (defined as estimated glomerular filtration rate [eGFR] <3 0ml/min per 1.73 m2) or ESRD on dialysis were enrolled from June 2016 to July 2020. The study population was categorized into DOAC, warfarin, and no OAC group, and differences in major or clinically relevant non-major (CRNM) bleeding, stroke/systemic embolism (SE), myocardial infarction/critical limb ischemia (CLI), and death were assessed.
Results
During a median 24 months of follow-up, major or CRNM bleeding risk was significantly reduced in the DOAC group compared to the warfarin group (hazard ratio [HR] 0.21, 95% confidence interval [CI] 0.05 to 0.95, p=0.042). In addition, the risk of composite adverse clinical outcome (major or CRNM bleeding, stroke/SE, myocardial infarction/CLI, and death) was significantly reduced in the DOAC group compared to the no OAC group (HR 0.32, 95% CI 0.11 to 0.96, p=0.043).
Conclusion
Among AF patients with advanced CKD or ESRD on dialysis, DOAC was associated with a lower risk of major or CRNM bleeding compared to warfarin and a lower risk of composite adverse clinical outcome compared to no OAC.
Funding Acknowledgement
Type of funding sources: Public grant(s) – National budget only. Main funding source(s): Korean Healthcare Technology R&D project funded by the Ministry of Health & Welfare (HI15C1200, HC19C0130)
Collapse
Affiliation(s)
- H Park
- Yonsei University College of Medicine , Seoul , Korea (Republic of)
| | - H T Yu
- Yonsei University College of Medicine , Seoul , Korea (Republic of)
| | - T H Kim
- Yonsei University College of Medicine , Seoul , Korea (Republic of)
| | - J Park
- Ewha Womans University School of Medicine , Seoul , Korea (Republic of)
| | - J K Park
- Hanyang university medical center , Seoul , Korea (Republic of)
| | - K W Kang
- Eulji University College of Medicine , Seoul , Korea (Republic of)
| | - J Shim
- Korea University Anam Hospital , Seoul , Korea (Republic of)
| | - J B Kim
- Kyunghee University , Seoul , Korea (Republic of)
| | - E K Choi
- Seoul National University Hospital , Seoul , Korea (Republic of)
| | - H W Park
- Chonnam National University School of Medicine , Gwangju , Korea (Republic of)
| | - Y S Lee
- Daegu Catholic University Medical Center , Daegu , Korea (Republic of)
| | - B Joung
- Yonsei University College of Medicine , Seoul , Korea (Republic of)
| |
Collapse
|
12
|
Labaki C, Bakouny Z, Sanglier T, Schmidt A, Shim J, Braun D, Bouquet F, Joyce M, Xie W, Tolaney S, Choueiri T. 252P Real-world progression-free survival (rwPFS) and time to next line of therapy (TTNT) as intermediate endpoints for survival in metastatic breast cancer: A real-world experience. Ann Oncol 2022. [DOI: 10.1016/j.annonc.2022.07.291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
|
13
|
Park SH, Shim J. Measures to Use Electroceuticals and Secure Social Reliability in Korea: A Narrative Review. Iran J Public Health 2022; 51:1916-1924. [PMID: 36743356 PMCID: PMC9884361 DOI: 10.18502/ijph.v51i9.10547] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/15/2022] [Accepted: 06/25/2022] [Indexed: 11/24/2022]
Abstract
Background The purpose of this study was to present a plan for utilizing electroceuticals to secure social reliability in Korea by investigating and analyzing the trends of humanities and social science research in Korea regarding electroceuticals. Methods The present situation of academic papers in the fields of humanities and social sciences that had researched electroceuticals in Korea and the topics that were directly related to electroceuticals had been reviewed and analyzed. Results Regarding researches related to electroceuticals in the fields of humanities and social sciences in Korea, they were insufficient quantitatively. Qualitatively, they had leaned too much toward theoretical and abstract discourses regarding neuroethics and neurophilosophy. Conclusion If researches in the fields of humanities and social sciences known to play a role in preparing practical guidelines could be carried out sufficiently while preparing a base for solving actual problems raised by electroceuticals, they could actually help plan a specific electroceuticals policy and a law to secure social reliability. Among principles of general life medical ethics (principles of biomedical ethics), when considering the principle of justice, the investment by the Korean government regarding research and development of electroceuticals, the rationalization of electroceuticals regulations, the application of electroceuticals of public health insurance benefit, and voluntary efforts of electroceuticals corporations are important in order to have strong plans for securing the social reliability of electroceuticals.
Collapse
Affiliation(s)
- Sam-Hun Park
- Asia Contents Institute, Konkuk University, Seoul, Korea
| | - Jiwon Shim
- Department of Philosophy, Dongguk University, Seoul, Korea,Corresponding Author:
| |
Collapse
|
14
|
Abstract
A gene normally involved in responding to hypoxia helps to protect insect muscles during migratory flight in a non-oxygen dependent manner.
Collapse
Affiliation(s)
- Mingyu Shin
- Department of Life Sciences, Hanyang UniversitySeoulRepublic of Korea
| | - Jiwon Shim
- Department of Life Sciences, Hanyang UniversitySeoulRepublic of Korea
- Research Institute for Natural Science, Hanyang UniversitySeoulRepublic of Korea
- Hanyang Institute of Bioscience and Biotechnology, Hanyang UniversitySeoulRepublic of Korea
| |
Collapse
|
15
|
Kim S, Eom J, Shim J. A Comparative Study on Intention to Use Digital Therapeutics: MZ Generation and Baby Boomers’ Digital Therapeutics Use Intention in Korea. IJERPH 2022; 19:ijerph19159556. [PMID: 35954906 PMCID: PMC9368623 DOI: 10.3390/ijerph19159556] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/29/2022] [Revised: 07/24/2022] [Accepted: 08/02/2022] [Indexed: 12/10/2022]
Abstract
Purpose: The aim of this study lies in articulating the relationship between digital literacy and private concern as a predictor of intention to use digital therapeutics. Materials and Methods: An online survey was conducted through a research company among 600 panels. The survey questionnaire consists of items of digital literacy, privacy concern, perceptions, and intention to use digital therapeutics, and the participants were asked to fill out the questions online. A structural equation model was established, and the difference in paths between the MZ generation and the baby boomers were examined. Results: Public perception of digital therapeutics was categorized into seven factors and the dimension of digital literacy as categorized into three factors. For the MZ generation, digital literacy and privacy concern both directly and indirectly affect the digital therapeutics use intention, in that higher the level of digital literacy and the lower the privacy concern, digital therapeutics perception and digital therapeutics use intention becomes intensified. For the baby boomers, digital literacy and privacy concern positively affect digital therapeutics perception, and as digital therapeutics perception becomes more positive, digital therapeutics use intention also increases. Direct effects of digital literacy and privacy concern to digital therapeutics use intention were not found for the baby boomers. Conclusion: In order to promote the use of digital therapeutics, it is common for the MZ generation and baby boomers to develop a positive perception toward digital therapeutics by cultivating digital literacy. For the MZ generation, privacy concerns need to be cautiously considered as they negatively affect the intention to use digital therapeutics.
Collapse
Affiliation(s)
- Soojin Kim
- Division of Communication & Media, Ewha Womans University, Seoul 03760, Korea;
| | - Juhee Eom
- Department of Law, Konkuk University, Chungju 05029, Korea;
| | - Jiwon Shim
- Department of Philosophy, Dongguk University, Seoul 04620, Korea
- Correspondence: ; Tel.: +82-2-2290-1719
| |
Collapse
|
16
|
Park H, Yu HT, Kim TH, Park J, Park JK, Kang KW, Shim J, Kim JB, Kim J, Choi EK, Park HW, Lee YS, Joung B. Resting heart rate and cardiovascular outcomes in patients with atrial fibrillation: CODE-AF registry. Europace 2022. [DOI: 10.1093/europace/euac053.182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Funding Acknowledgements
Type of funding sources: None.
Background
The prognostic significance of resting heart rate and its therapeutic target in atrial fibrillation (AF) is uncertain.
Purpose
The aim of this study was to investigate the relationships between resting heart rate and cardiovascular outcomes in patients with AF.
Methods
A total of 8,886 patients with AF was included from the COmparison study of Drugs for symptom control and complication prEvention of AF (CODE-AF) registry. Patients were categorized according to baseline heart rate, and cardiovascular outcomes were accessed during a median follow-up of 30 months. The primary outcome was a composite of cardiovascular death, hospitalization due to heart failure, and myocardial infarction/critical limb ischemia.
Results
Compared to heart rate ≥100 beats per minute (bpm), heart rate 80-99 bpm was associated with the lowest risk of primary outcome (adjusted hazard ratio [HR] 0.56, 95% confidence interval [CI] 0.40-0.79, p=0.001). In subgroup of patients with heart failure with preserved ejection fraction (HFpEF), heart rate between 80-99 bpm was associated with reduced risk of primary outcome compared to heart rate ≥100 bpm (HR 0.40, 95% CI 0.16-0.98, p=0.045). However, in patients with heart failure with reduced ejection fraction (HFrEF), there was no association between resting heart rate and cardiovascular outcomes (P for interaction 0.001).
Conclusion
Resting heart rate was associated with cardiovascular outcomes in patients with AF, and those with a resting heart rate between 80-99 bpm had the lowest risk of adverse events. The impact of resting heart rate on adverse events persisted in patients with concomitant HFpEF but was not apparent in those with concomitant HFrEF.
Collapse
Affiliation(s)
- H Park
- Yonsei University College of Medicine, Seoul, Korea (Republic of)
| | - HT Yu
- Yonsei University College of Medicine, Seoul, Korea (Republic of)
| | - TH Kim
- Yonsei University College of Medicine, Seoul, Korea (Republic of)
| | - J Park
- Ewha Womans University School of Medicine, Seoul, Korea (Republic of)
| | - JK Park
- Hanyang University Seoul Hospital, Seoul, Korea (Republic of)
| | - KW Kang
- Eulji University College of Medicine, Seoul, Korea (Republic of)
| | - J Shim
- Korea University Medical Center, Seoul, Korea (Republic of)
| | - JB Kim
- Kyung Hee University Hospital, Seoul, Korea (Republic of)
| | - J Kim
- University of Ulsan College of Medicine, Seoul, Korea (Republic of)
| | - EK Choi
- Seoul National University Hospital, Seoul, Korea (Republic of)
| | - HW Park
- Chonnam National University School of Medicine, Gwangju, Korea (Republic of)
| | - YS Lee
- Daegu Catholic University Medical Center, Daegu, Korea (Republic of)
| | - B Joung
- Yonsei University College of Medicine, Seoul, Korea (Republic of)
| |
Collapse
|
17
|
Martel J, Addo K, Kim Y, Hamdan F, Demo H, Bonavita G, Li J, Ahmad S, Shah S, Delurgio D, Bailey C, Shim J. Impact of mapping technology on procedural characteristics during radiofrequency or cryoballoon pulmonary vein isolation for atrial fibrillation. Europace 2022. [DOI: 10.1093/europace/euac053.195] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Abstract
Funding Acknowledgements
Type of funding sources: None.
Background/Introduction: Cryoballoon ablation (CBA) is often associated with shorter procedure times along with tradeoffs such as increased fluoroscopy use compared to radiofrequency (RF) ablation of atrial fibrillation (AF), however the impact of mapping technology on these characteristics is not fully understood.
Purpose
To assess the effect of mapping technology on trends in fluoroscopy use and procedure times in AF pulmonary vein isolation (PVI) procedures with an RF or CBA catheter.
Methods
Acute procedure data from 210 de novo AF cases using a 3D mapping system was prospectively collected from 48 centers in eight countries. Choice of technology was left to physician discretion; a PVI only ablation strategy was utilized in all cases. Procedure data such as total procedure and fluoroscopy times from cases using either an RF or CBA catheter with either a grid-style mapping catheter (HD Grid) or circular mapping catheter (CMC) were compared.
Results
Of the 210 cases, RF ablation was used in 103 (49%), and CBA used in 107 (51%). In RF cases, a relatively even split between CMC and HD Grid use was observed (n=46, 45% vs. n=57, 55%), while a CMC was used in 100% of CBA cases (Figure 1). Across all cases, fluoroscopy and procedure times were significantly shorter when HD Grid was used (7.4±26.7 minutes; 108.2±46.3 minutes) compared to a CMC (20.4±17.6 minutes; 133.7±62.7) (p<0.001; p=0.003). A similar trend was also observed in RF cases using HD Grid (7.4±26.7 minutes; 108.2±46.3 minutes) compared to a CMC (17.9±12.3 minutes; 175.1±50.5) (p=0.01; p<0.001). Fluoroscopy times in RF cases with HD Grid (7.4±26.7 minutes) were significantly shorter compared to CBA cases with a CMC (21.5±19.4 minutes) (p<0.001), while procedure times were similar (108.2±46.3 minutes; 116.0±59.2 minutes, p=0.20).
Conclusion(s)
Use of HD Grid resulted in significantly shorter procedure and fluoroscopy times compared to a CMC across all cases, including those using RF ablation. Fluoroscopy times were also significantly shorter in RF cases using HD Grid compared to CBA cases using a CMC, with similar procedure times. These observations suggest that use of HD Grid may better enable safer and more efficient PVI, specifically when employing RF ablation, in addition to safer and equally efficient RF PVI compared to CBA with a CMC. Further study in in a larger, randomized cohort may be necessary.
Collapse
Affiliation(s)
- J Martel
- South Miami Hospital, Miami, United States of America
| | - K Addo
- Mount Carmel Health System, Columbus, United States of America
| | - Y Kim
- Korea University, Seoul, Korea (Republic of)
| | - F Hamdan
- Aultman Hospital, Canton, United States of America
| | - H Demo
- Swedish Hospital, Chicago, United States of America
| | - G Bonavita
- Aultman Hospital, Canton, United States of America
| | - J Li
- ProMedica Toledo Hospital, Toledo, United States of America
| | - S Ahmad
- Kettering Medical Center, Dayton, United States of America
| | - S Shah
- Virginia Arrhythmia Consultants, Richmond, United States of America
| | - D Delurgio
- Emory Saint Joseph’s Hospital, Atlanta, United States of America
| | - C Bailey
- Abbott, St. Paul, United States of America
| | - J Shim
- Korea University, Seoul, Korea (Republic of)
| |
Collapse
|
18
|
Shah S, Shim J, Martel J, Addo K, Delurgio D, Demo H, Hamdan F, Bonavita G, Li J, Bailey C, Kim Y. Global preferences in mapping technology and its impact on fluoroscopy and procedure times during catheter ablation of atrial fibrillation. Europace 2022. [DOI: 10.1093/europace/euac053.196] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Funding Acknowledgements
Type of funding sources: None.
Background/Introduction
Choice in mapping technology may play a critical role in reducing fluoroscopy and procedure times during atrial fibrillation (AF) ablation, however this relationship is not well studied.
Purpose
To assess the impact of mapping technology on trends in fluoroscopy use and procedure times in AF ablation procedures.
Methods
Acute procedure data from 525 AF cases was prospectively collected from 68 centers in nine countries. Choice of technology and ablation strategy, including PVI and substrate modification, were left to physician discretion. Procedure data such as total procedure and fluoroscopy times from cases using a grid-style mapping catheter (HD Grid) were compared to those using a circular mapping catheter (CMC).
Results
Of the 525 cases, HD Grid was used in 230 (44%), and CMC was used in 295 (56%). HD Grid was routinely used for both de novo and redo procedures while CMC was used predominantly for de novo procedures (Table 1). Similar procedure times were noted in redo PAF and redo PersAF procedures, while significantly shorter procedure times were observed for the HD Grid group in both de novo PAF and PersAF (113.9±48.8 vs. 125.9±56.3 minutes, p=0.04; and 142.8±53.2 vs. 169.8±52.2 minutes, p=0.001).
Overall fluoroscopy times were significantly shorter using HD Grid compared to a CMC (9.0±19.6 minutes vs. 19.8±16.4 minutes, p<0.001), including significantly shorter fluoroscopy times in de novo PAF, de novo PersAF, and redo PAF (Table 1). There were 155 cases completed without fluoroscopy use; zero fluoroscopy cases accounted for 50% (114/230) and 14% (41/295) of total cases completed with HD Grid and a CMC, respectively (p<0.001).
Conclusion(s)
Use of HD Grid was observed in a significantly higher portion of zero fluoroscopy cases and resulted in significantly shorter procedure and fluoroscopy times in both de novo PAF and de novo PersAF and significantly shorter fluoroscopy times in redo PAF. These observations suggest that use of HD Grid may better enable faster and safer procedures in these specific AF types compared to CMCs, although further analysis in a larger, randomized cohort may be warranted.
Collapse
Affiliation(s)
- S Shah
- Virginia Arrhythmia Consultants, Richmond, United States of America
| | - J Shim
- Korea University, Seoul, Korea (Republic of)
| | - J Martel
- South Miami Hospital, Miami, United States of America
| | - K Addo
- Mount Carmel Health System, Columbus, United States of America
| | - D Delurgio
- Emory Saint Joseph’s Hospital, Atlanta, United States of America
| | - H Demo
- Swedish Hospital, Chicago, United States of America
| | - F Hamdan
- Aultman Hospital, Canton, United States of America
| | - G Bonavita
- Aultman Hospital, Canton, United States of America
| | - J Li
- ProMedica Toledo Hospital, Toledo, United States of America
| | - C Bailey
- Abbott, St. Paul, United States of America
| | - Y Kim
- Korea University, Seoul, Korea (Republic of)
| |
Collapse
|
19
|
Abstract
Drosophila melanogaster lymph gland, the primary site of hematopoiesis, contains myeloid-like progenitor cells that differentiate into functional hemocytes in the circulation of pupae and adults. Fly hemocytes are dynamic and plastic, and they play diverse roles in the innate immune response and wound healing. Various hematopoietic regulators in the lymph gland ensure the developmental and functional balance between progenitors and mature blood cells. In addition, systemic factors, such as nutrient availability and sensory inputs, integrate environmental variabilities to synchronize the blood development in the lymph gland with larval growth, physiology, and immunity. This review examines the intrinsic and extrinsic factors determining the progenitor states during hemocyte development in the lymph gland and provides new insights for further studies that may extend the frontier of our collective knowledge on hematopoiesis and innate immunity.
Collapse
Affiliation(s)
| | - Bumsik Cho
- Department of Life Science, Hanyang University, Seoul 04763, Korea
| | - Jiwon Shim
- Department of Life Science, Hanyang University, Seoul 04763, Korea
- Research Institute for Natural Science, Hanyang University, Seoul 04763, Korea
- Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul 04763, Korea
| |
Collapse
|
20
|
Li H, Janssens J, De Waegeneer M, Kolluru SS, Davie K, Gardeux V, Saelens W, David F, Brbić M, Spanier K, Leskovec J, McLaughlin CN, Xie Q, Jones RC, Brueckner K, Shim J, Tattikota SG, Schnorrer F, Rust K, Nystul TG, Carvalho-Santos Z, Ribeiro C, Pal S, Mahadevaraju S, Przytycka TM, Allen AM, Goodwin SF, Berry CW, Fuller MT, White-Cooper H, Matunis EL, DiNardo S, Galenza A, O’Brien LE, Dow JAT, Jasper H, Oliver B, Perrimon N, Deplancke B, Quake SR, Luo L, Aerts S, Agarwal D, Ahmed-Braimah Y, Arbeitman M, Ariss MM, Augsburger J, Ayush K, Baker CC, Banisch T, Birker K, Bodmer R, Bolival B, Brantley SE, Brill JA, Brown NC, Buehner NA, Cai XT, Cardoso-Figueiredo R, Casares F, Chang A, Clandinin TR, Crasta S, Desplan C, Detweiler AM, Dhakan DB, Donà E, Engert S, Floc'hlay S, George N, González-Segarra AJ, Groves AK, Gumbin S, Guo Y, Harris DE, Heifetz Y, Holtz SL, Horns F, Hudry B, Hung RJ, Jan YN, Jaszczak JS, Jefferis GSXE, Karkanias J, Karr TL, Katheder NS, Kezos J, Kim AA, Kim SK, Kockel L, Konstantinides N, Kornberg TB, Krause HM, Labott AT, Laturney M, Lehmann R, Leinwand S, Li J, Li JSS, Li K, Li K, Li L, Li T, Litovchenko M, Liu HH, Liu Y, Lu TC, Manning J, Mase A, Matera-Vatnick M, Matias NR, McDonough-Goldstein CE, McGeever A, McLachlan AD, Moreno-Roman P, Neff N, Neville M, Ngo S, Nielsen T, O'Brien CE, Osumi-Sutherland D, Özel MN, Papatheodorou I, Petkovic M, Pilgrim C, Pisco AO, Reisenman C, Sanders EN, Dos Santos G, Scott K, Sherlekar A, Shiu P, Sims D, Sit RV, Slaidina M, Smith HE, Sterne G, Su YH, Sutton D, Tamayo M, Tan M, Tastekin I, Treiber C, Vacek D, Vogler G, Waddell S, Wang W, Wilson RI, Wolfner MF, Wong YCE, Xie A, Xu J, Yamamoto S, Yan J, Yao Z, Yoda K, Zhu R, Zinzen RP. Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly. Science 2022; 375:eabk2432. [PMID: 35239393 PMCID: PMC8944923 DOI: 10.1126/science.abk2432] [Citation(s) in RCA: 202] [Impact Index Per Article: 101.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
For more than 100 years, the fruit fly Drosophila melanogaster has been one of the most studied model organisms. Here, we present a single-cell atlas of the adult fly, Tabula Drosophilae, that includes 580,000 nuclei from 15 individually dissected sexed tissues as well as the entire head and body, annotated to >250 distinct cell types. We provide an in-depth analysis of cell type-related gene signatures and transcription factor markers, as well as sexual dimorphism, across the whole animal. Analysis of common cell types between tissues, such as blood and muscle cells, reveals rare cell types and tissue-specific subtypes. This atlas provides a valuable resource for the Drosophila community and serves as a reference to study genetic perturbations and disease models at single-cell resolution.
Collapse
Affiliation(s)
- Hongjie Li
- Department of Biology, Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA,Huffington Center on Aging and Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA
| | - Jasper Janssens
- VIB-KU Leuven Center for Brain & Disease Research, KU Leuven, Leuven 3000, Belgium,Laboratory of Computational Biology, Department of Human Genetics, KU Leuven, Leuven 3000, Belgium
| | - Maxime De Waegeneer
- VIB-KU Leuven Center for Brain & Disease Research, KU Leuven, Leuven 3000, Belgium,Laboratory of Computational Biology, Department of Human Genetics, KU Leuven, Leuven 3000, Belgium
| | - Sai Saroja Kolluru
- Departments of Bioengineering and Applied Physics, Stanford University, Stanford CA USA, and Chan Zuckerberg Biohub, San Francisco CA, USA
| | - Kristofer Davie
- VIB-KU Leuven Center for Brain & Disease Research, KU Leuven, Leuven 3000, Belgium
| | - Vincent Gardeux
- Laboratory of Systems Biology and Genetics, Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL) and Swiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland
| | - Wouter Saelens
- Laboratory of Systems Biology and Genetics, Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL) and Swiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland
| | - Fabrice David
- Laboratory of Systems Biology and Genetics, Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL) and Swiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland
| | - Maria Brbić
- Department of Computer Science, Stanford University, Stanford, CA 94305, USA, and Chan Zuckerberg Biohub, San Francisco CA, USA
| | - Katina Spanier
- VIB-KU Leuven Center for Brain & Disease Research, KU Leuven, Leuven 3000, Belgium,Laboratory of Computational Biology, Department of Human Genetics, KU Leuven, Leuven 3000, Belgium
| | - Jure Leskovec
- Department of Computer Science, Stanford University, Stanford, CA 94305, USA, and Chan Zuckerberg Biohub, San Francisco CA, USA
| | - Colleen N. McLaughlin
- Department of Biology, Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA
| | - Qijing Xie
- Department of Biology, Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA
| | - Robert C. Jones
- Departments of Bioengineering and Applied Physics, Stanford University, Stanford CA USA, and Chan Zuckerberg Biohub, San Francisco CA, USA
| | - Katja Brueckner
- Department of Cell and Tissue Biology, University of California, San Francisco, CA 94143, USA
| | - Jiwon Shim
- Department of Life Science, College of Natural Science, Hanyang University, Seoul, Republic of Korea 04763
| | - Sudhir Gopal Tattikota
- Department of Genetics, Blavatnik Institute, Harvard Medical School, Harvard University, Boston, MA 02115; Howard Hughes Medical Institute, Boston, MA, USA
| | - Frank Schnorrer
- Aix-Marseille University, CNRS, IBDM (UMR 7288), Turing Centre for Living systems, 13009 Marseille, France
| | - Katja Rust
- Institute of Physiology and Pathophysiology, Department of Molecular Cell Physiology, Philipps-University, Marburg, Germany,Department of Anatomy, University of California, San Francisco, CA 94143, USA
| | - Todd G. Nystul
- Department of Anatomy, University of California, San Francisco, CA 94143, USA
| | - Zita Carvalho-Santos
- Behavior and Metabolism Laboratory, Champalimaud Research, Champalimaud Centre for the Unknown, Lisbon, Portugal
| | - Carlos Ribeiro
- Behavior and Metabolism Laboratory, Champalimaud Research, Champalimaud Centre for the Unknown, Lisbon, Portugal
| | - Soumitra Pal
- National Center of Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD 20894, USA
| | - Sharvani Mahadevaraju
- Laboratory of Cellular and Developmental Biology, National Institute of Diabetes and Kidney and Digestive Diseases, National Institutes of Health, Bethesda, MD 20892, USA
| | - Teresa M. Przytycka
- National Center of Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD 20894, USA
| | - Aaron M. Allen
- Centre for Neural Circuits & Behaviour, University of Oxford, Tinsley Building, Mansfield road, Oxford, OX1 3SR, UK
| | - Stephen F. Goodwin
- Centre for Neural Circuits & Behaviour, University of Oxford, Tinsley Building, Mansfield road, Oxford, OX1 3SR, UK
| | - Cameron W. Berry
- Department of Developmental Biology and Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Margaret T. Fuller
- Department of Developmental Biology and Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Helen White-Cooper
- Molecular Biosciences Division, Cardiff University, Cardiff, CF10 3AX UK
| | - Erika L. Matunis
- Department of Cell Biology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
| | - Stephen DiNardo
- Perelman School of Medicine, The University of Pennsylvania, and The Penn Institute for Regenerative Medicine Philadelphia, PA 19104, USA
| | - Anthony Galenza
- Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford CA 94305, USA
| | - Lucy Erin O’Brien
- Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford CA 94305, USA
| | - Julian A. T. Dow
- Institute of Molecular, Cell & Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK
| | - FCA Consortium
- FCA Consortium: All authors listed before Acknowledgements, and all contributions and affiliations listed in the Supplementary Materials
| | - Heinrich Jasper
- Immunology Discovery, Genentech, Inc., 1 DNA Way, South San Francisco, CA 94080, USA
| | - Brian Oliver
- Laboratory of Cellular and Developmental Biology, National Institute of Diabetes and Kidney and Digestive Diseases, National Institutes of Health, Bethesda, MD 20892, USA
| | - Norbert Perrimon
- Department of Genetics, Blavatnik Institute, Harvard Medical School, Harvard University, Boston, MA 02115; Howard Hughes Medical Institute, Boston, MA, USA,corresponding authors: (N.P.), (B.D.), (S.R.Q.), (L.L.), (S.A.)
| | - Bart Deplancke
- Laboratory of Systems Biology and Genetics, Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL) and Swiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland,corresponding authors: (N.P.), (B.D.), (S.R.Q.), (L.L.), (S.A.)
| | - Stephen R. Quake
- Departments of Bioengineering and Applied Physics, Stanford University, Stanford CA USA, and Chan Zuckerberg Biohub, San Francisco CA, USA,corresponding authors: (N.P.), (B.D.), (S.R.Q.), (L.L.), (S.A.)
| | - Liqun Luo
- Department of Biology, Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA,corresponding authors: (N.P.), (B.D.), (S.R.Q.), (L.L.), (S.A.)
| | - Stein Aerts
- VIB-KU Leuven Center for Brain & Disease Research, KU Leuven, Leuven 3000, Belgium,Laboratory of Computational Biology, Department of Human Genetics, KU Leuven, Leuven 3000, Belgium,corresponding authors: (N.P.), (B.D.), (S.R.Q.), (L.L.), (S.A.)
| | - Devika Agarwal
- MRC Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Headington, Oxford OX3 9DS, UK
| | | | - Michelle Arbeitman
- Biomedical Sciences Department, Florida State University, Tallahassee, FL, USA
| | - Majd M Ariss
- Department of Genetics, Harvard Medical School, Boston, MA, USA
| | - Jordan Augsburger
- Department of Cell and Tissue Biology, University of California, San Francisco, CA 94143, USA
| | - Kumar Ayush
- Department of Computer Science, Stanford University, Stanford, CA 94305, USA
| | - Catherine C Baker
- Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Torsten Banisch
- Skirball Institute and HHMI, New York University Langone Medical Center, New York City, NY 10016, USA
| | - Katja Birker
- Development, Aging and Regeneration Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA
| | - Rolf Bodmer
- Development, Aging and Regeneration Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA
| | - Benjamin Bolival
- Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Susanna E Brantley
- Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Julie A Brill
- Cell Biology Program, The Hospital for Sick Children (SickKids), Toronto, ON M5G 0A4, Canada.,Department of Molecular Genetics, University of Toronto, Toronto, ON M5S 1A8, Canada
| | - Nora C Brown
- Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA
| | - Norene A Buehner
- Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA
| | - Xiaoyu Tracy Cai
- Immunology Discovery, Genentech, Inc., South San Francisco, CA 94080, USA
| | - Rita Cardoso-Figueiredo
- Behavior and Metabolism Laboratory, Champalimaud Research, Champalimaud Centre for the Unknown, Lisbon, Portugal
| | - Fernando Casares
- CABD (Andalusian Centre for Developmental Biology), CSIC-UPO-JA, Seville 41013, Spain
| | - Amy Chang
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Thomas R Clandinin
- Department of Neurobiology, Stanford University, Stanford, CA 94305, USA
| | - Sheela Crasta
- Department of Bioengineering, Stanford University, Stanford, CA, USA.,Department of Applied Physics, Stanford University, Stanford, CA, USA.,Chan Zuckerberg Biohub, San Francisco CA, USA
| | - Claude Desplan
- Department of Biology, New York University, New York, New York 10003, USA
| | | | - Darshan B Dhakan
- Behavior and Metabolism Laboratory, Champalimaud Research, Champalimaud Centre for the Unknown, Lisbon, Portugal
| | - Erika Donà
- Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
| | - Stefanie Engert
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Swann Floc'hlay
- VIB-KU Leuven Center for Brain and Disease Research, KU Leuven, Leuven 3000, Belgium.,Laboratory of Computational Biology, Department of Human Genetics, KU Leuven, Leuven 3000, Belgium
| | - Nancy George
- European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton CB10 1SD, UK
| | - Amanda J González-Segarra
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Andrew K Groves
- Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.,Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA
| | - Samantha Gumbin
- Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Yanmeng Guo
- Department of Physiology, Department of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, CA, USA.,Howard Hughes Medical Institute, San Francisco, CA, USA
| | - Devon E Harris
- Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Yael Heifetz
- The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Stephen L Holtz
- Department of Neurobiology, Harvard Medical School, Boston, MA 02115, USA
| | - Felix Horns
- Department of Bioengineering and Biophysics Graduate Program, Stanford University, Stanford, CA 94305, USA
| | - Bruno Hudry
- Université Côte d'Azur, CNRS, INSERM, iBV, France
| | - Ruei-Jiun Hung
- Department of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA
| | - Yuh Nung Jan
- Department of Physiology, Department of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, CA, USA.,Howard Hughes Medical Institute, San Francisco, CA, USA
| | - Jacob S Jaszczak
- Department of Physiology, Department of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, CA, USA.,Howard Hughes Medical Institute, San Francisco, CA, USA
| | | | | | - Timothy L Karr
- Biodesign Institute, Arizona State University, Tempe, AZ 85281, USA
| | | | - James Kezos
- Development, Aging and Regeneration Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA
| | - Anna A Kim
- Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305, USA.,University of California, Santa Barbara, CA 93106, USA.,Uppsala University, Sweden
| | - Seung K Kim
- Department of Developmental Biology and Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.,Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Lutz Kockel
- Department of Developmental Biology and Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Nikolaos Konstantinides
- Institut Jacques Monod, Centre National de la Recherche Scientifique-UMR 7592, Université Paris Diderot, Paris, France
| | - Thomas B Kornberg
- Cardiovascular Research Institute, University of California, San Francisco, CA 94143, USA
| | - Henry M Krause
- Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, ON M5S 3E1, Canada
| | - Andrew Thomas Labott
- Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Meghan Laturney
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Ruth Lehmann
- Skirball Institute, Department of Cell Biology and HHMI, New York University Langone Medical Center, New York City, NY 10016
| | - Sarah Leinwand
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Jiefu Li
- Howard Hughes Medical Institute, Department of Biology, Stanford University, Stanford, CA 94305, USA
| | - Joshua Shing Shun Li
- Department of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA
| | - Kai Li
- Department of Physiology, Department of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, CA, USA.,Howard Hughes Medical Institute, San Francisco, CA, USA
| | - Ke Li
- Department of Physiology, Department of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, CA, USA.,Howard Hughes Medical Institute, San Francisco, CA, USA
| | - Liying Li
- Department of Physiology, Department of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, CA, USA.,Howard Hughes Medical Institute, San Francisco, CA, USA
| | - Tun Li
- Department of Physiology, Department of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, CA, USA.,Howard Hughes Medical Institute, San Francisco, CA, USA
| | - Maria Litovchenko
- Laboratory of Systems Biology and Genetics, Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland.,Swiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland
| | - Han-Hsuan Liu
- Department of Physiology, Department of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, CA, USA.,Howard Hughes Medical Institute, San Francisco, CA, USA
| | - Yifang Liu
- Department of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA
| | - Tzu-Chiao Lu
- Huffington Center on Aging, Baylor College of Medicine, Houston, TX 77030, USA
| | - Jonathan Manning
- European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton CB10 1SD, UK
| | - Anjeli Mase
- Department of Cell and Tissue Biology, University of California, San Francisco, CA 94143, USA
| | | | - Neuza Reis Matias
- Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Caitlin E McDonough-Goldstein
- Department of Biology, Syracuse University, Syracuse, NY, USA.,Department of Evolutionary Biology, University of Vienna, Vienna, Austria
| | | | - Alex D McLachlan
- Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3DY, UK
| | - Paola Moreno-Roman
- Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Norma Neff
- Chan Zuckerberg Biohub, San Francisco CA, USA
| | - Megan Neville
- Centre for Neural Circuits and Behaviour, University of Oxford, Oxford OX1 3SR, UK
| | - Sang Ngo
- Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Tanja Nielsen
- Development, Aging and Regeneration Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA
| | - Caitlin E O'Brien
- Department of Physiology, Department of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, CA, USA.,Howard Hughes Medical Institute, San Francisco, CA, USA
| | - David Osumi-Sutherland
- European Bioinformatics Institute (EMBL/EBI), Wellcome Trust Genome Campus, Cambridge, UK
| | | | - Irene Papatheodorou
- European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton CB10 1SD, UK
| | - Maja Petkovic
- Department of Physiology, Department of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, CA, USA.,Howard Hughes Medical Institute, San Francisco, CA, USA
| | - Clare Pilgrim
- Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge CB2 3DY, UK
| | | | - Carolina Reisenman
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Erin Nicole Sanders
- Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Gilberto Dos Santos
- The Biological Laboratories, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA
| | - Kristin Scott
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Aparna Sherlekar
- Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Philip Shiu
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA
| | - David Sims
- MRC Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Headington, Oxford OX3 9DS, UK
| | - Rene V Sit
- Chan Zuckerberg Biohub, San Francisco CA, USA
| | - Maija Slaidina
- Skirball Institute, Faculty of Medicine, New York University, New York, NY 10016
| | - Harold E Smith
- Genomics Core, National Institute of Diabetes and Digestive and Kidney Diseases, US National Institutes of Health, Bethesda, MD, USA
| | - Gabriella Sterne
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Yu-Han Su
- Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Daniel Sutton
- Graduate Program in Genetics and Genomics, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030 USA
| | - Marco Tamayo
- Development, Aging and Regeneration Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA
| | | | - Ibrahim Tastekin
- Behavior and Metabolism Laboratory, Champalimaud Research, Champalimaud Centre for the Unknown, Lisbon, Portugal
| | - Christoph Treiber
- Centre for Neural Circuits and Behaviour, University of Oxford, Tinsley Building, Mansfield Road, Oxford OX1 3TA, UK
| | - David Vacek
- Howard Hughes Medical Institute, Department of Biology, Stanford University, Stanford, CA 94305, USA
| | - Georg Vogler
- Development, Aging and Regeneration Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA
| | - Scott Waddell
- Centre for Neural Circuits and Behaviour, University of Oxford, Tinsley Building, Mansfield Road, Oxford OX1 3TA, UK
| | - Wanpeng Wang
- Cardiovascular Research Institute, University of California, San Francisco, CA 94143, USA
| | - Rachel I Wilson
- Department of Neurobiology, Harvard Medical School, Boston, MA 02115, USA
| | - Mariana F Wolfner
- Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA
| | - Yiu-Cheung E Wong
- Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Anthony Xie
- Howard Hughes Medical Institute, Department of Biology, Stanford University, Stanford, CA 94305, USA
| | - Jun Xu
- Department of Genetics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA
| | - Shinya Yamamoto
- Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.,Jan and Dan Duncan Neurological Research Institute, Texas Children's Hospital, Houston, TX 77030, USA
| | - Jia Yan
- Chan Zuckerberg Biohub, San Francisco CA, USA
| | - Zepeng Yao
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Kazuki Yoda
- Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305, USA
| | - Ruijun Zhu
- Department of Physiology, Department of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, CA, USA.,Howard Hughes Medical Institute, San Francisco, CA, USA
| | - Robert P Zinzen
- Laboratory for Systems Biology of Neural Tissue Differentiation, Berlin Institute for Medical Systems Biology (BIMSB), Max Delbrueck Centre for Molecular Medicine (MDC) in the Helmholtz Association, Robert-Roessle-Strasse 12, 13125 Berlin, Germany
| |
Collapse
|
21
|
Martinelli L, Gajović S, Shim J. Menstrual Cycle Control - A Controversial Example of Human Enhancement in Relation to Women's Body and Psyche. Psychiatr Danub 2021; 33:287-291. [PMID: 34795163 DOI: 10.24869/psyd.2021.287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Abstract
By discussing the position of bio-conservatism and transhumanism, we question if the women menstrual cycle control would represent a new way toward a more responsive relation with one's own physical and mental health, a choice of freedom from undesired physiological conditions, a medicalization of a natural physiological event or an innovative carrier of social stigma against the women. We argue that the advancement of medical science may allow women a choice if to regulate own menstrual cycle, offering them as well a right to intervene responsibly on their own body and psyche. Accordingly, a post-human society could provide a suitable coexistence between women who claim menstruation as the biological essence and those who claim it as an option.
Collapse
|
22
|
Nguyen TTN, Shim J, Song YH. Chk2-p53 and JNK in irradiation-induced cell death of hematopoietic progenitors and differentiated cells in Drosophila larval lymph gland. Biol Open 2021; 10:271116. [PMID: 34328173 PMCID: PMC8411456 DOI: 10.1242/bio.058809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Accepted: 07/22/2021] [Indexed: 11/20/2022] Open
Abstract
Ionizing radiation (IR) induces DNA double-strand breaks that activate the DNA damage response (DDR), which leads to cell cycle arrest, senescence, or apoptotic cell death. Understanding the DDR of stem cells is critical to tissue homeostasis and the survival of the organism. Drosophila hematopoiesis serves as a model system for sensing stress and environmental changes; however, their response to DNA damage remains largely unexplored. The Drosophila lymph gland is the larval hematopoietic organ, where stem-like progenitors proliferate and differentiate into mature blood cells called hemocytes. We found that apoptotic cell death was induced in progenitors and hemocytes after 40 Gy irradiation, with progenitors showing more resistance to IR-induced cell death compared to hemocytes at a lower dose. Furthermore, we found that Drosophila ATM (tefu), Chk2 (lok), p53, and reaper were necessary for IR-induced cell death in the progenitors. Notably, IR-induced cell death in mature hemocytes required tefu, Drosophila JNK (bsk), and reaper, but not lok or p53. In summary, we found that DNA damage induces apoptotic cell death in the late third instar larval lymph gland and identified lok/p53-dependent and -independent cell death pathways in progenitors and mature hemocytes, respectively.
Collapse
Affiliation(s)
- Tram Thi Ngoc Nguyen
- Department of Biomedical Gerontology, Hallym University, Chuncheon, Gangwon-do 24252, Republic of Korea.,Ilsong Institute of Life Science, Hallym University, Seoul 07247, Republic of Korea
| | - Jiwon Shim
- Department of Life Science, College of Natural Science, Hanyang University, Seoul 04763, Republic of Korea
| | - Young-Han Song
- Department of Biomedical Gerontology, Hallym University, Chuncheon, Gangwon-do 24252, Republic of Korea.,Ilsong Institute of Life Science, Hallym University, Seoul 07247, Republic of Korea
| |
Collapse
|
23
|
Madhwal S, Shin M, Kapoor A, Goyal M, Joshi MK, Ur Rehman PM, Gor K, Shim J, Mukherjee T. Metabolic control of cellular immune-competency by odors in Drosophila. eLife 2020; 9:60376. [PMID: 33372660 PMCID: PMC7808736 DOI: 10.7554/elife.60376] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Accepted: 12/28/2020] [Indexed: 12/16/2022] Open
Abstract
Studies in different animal model systems have revealed the impact of odors on immune cells; however, any understanding on why and how odors control cellular immunity remained unclear. We find that Drosophila employ an olfactory-immune cross-talk to tune a specific cell type, the lamellocytes, from hematopoietic-progenitor cells. We show that neuronally released GABA derived upon olfactory stimulation is utilized by blood-progenitor cells as a metabolite and through its catabolism, these cells stabilize Sima/HIFα protein. Sima capacitates blood-progenitor cells with the ability to initiate lamellocyte differentiation. This systemic axis becomes relevant for larvae dwelling in wasp-infested environments where chances of infection are high. By co-opting the olfactory route, the preconditioned animals elevate their systemic GABA levels leading to the upregulation of blood-progenitor cell Sima expression. This elevates their immune-potential and primes them to respond rapidly when infected with parasitic wasps. The present work highlights the importance of the olfaction in immunity and shows how odor detection during animal development is utilized to establish a long-range axis in the control of blood-progenitor competency and immune-priming.
Collapse
Affiliation(s)
- Sukanya Madhwal
- Institute for Stem Cell Science and Regenerative Medicine (inStem), Bangalore, India.,Manipal Academy of Higher Education, Manipal, India
| | - Mingyu Shin
- Department of Life Science, College of Natural Science, Hanyang University, Seoul, Republic of Korea
| | - Ankita Kapoor
- Institute for Stem Cell Science and Regenerative Medicine (inStem), Bangalore, India.,Manipal Academy of Higher Education, Manipal, India
| | - Manisha Goyal
- Institute for Stem Cell Science and Regenerative Medicine (inStem), Bangalore, India.,The University of Trans-Disciplinary Health Sciences & Technology (TDU), Bengaluru, India
| | - Manish K Joshi
- Institute for Stem Cell Science and Regenerative Medicine (inStem), Bangalore, India
| | | | - Kavan Gor
- Institute for Stem Cell Science and Regenerative Medicine (inStem), Bangalore, India
| | - Jiwon Shim
- Department of Life Science, College of Natural Science, Hanyang University, Seoul, Republic of Korea.,Research Institute for Natural Science, Hanyang University, Seoul, Republic of Korea
| | - Tina Mukherjee
- Institute for Stem Cell Science and Regenerative Medicine (inStem), Bangalore, India
| |
Collapse
|
24
|
Choi J, Lee K, Kim Y, Jeong J, Choi H, Choi Y, Shim J, Na J, Choi C, Han K, Kim Y. Depression and risk of atrial fibrillation: a nationwide population-based study. Eur Heart J 2020. [DOI: 10.1093/ehjci/ehaa946.2852] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Background
Although treatments of atrial fibrillation (AF) based on the biological mechanisms for initiation and maintenance of AF improve cardiovascular outcomes, psychosocial factors have been also implicated in the etiology and progression of cardiovascular disease.
Objective
We aimed to evaluate the association between depression and incident AF using nationwide database from the National Health Insurance Service in South Korea.
Methods
A total of 9,075,224 participants with data of national health checkup in 2009 were included, and participants who were diagnosed with AF before the examination were excluded. Exposure to depression is determined by the precedence of depression diagnosed within 2 years.
Results
Depression was diagnosed in 1.37% (124,709) of participants at baseline. Compared to the non-depression group, depression group was likely to be female and had higher comorbidities. After adjusting covariates, depression group had a higher risk of incident AF compared with non-depression group (hazard ratio, 1.30; 95% confidence interval, 1.26–1.34). Repeated exposure to depression increased a risk of incident AF (Figure 1).
Conclusion
Depression was associated with an increased risk of new-onset AF. This association was stronger for patients who had more burden of depression. Future studies should investigate whether early treatment of depression can prevent incident AF.
Figure 1
Funding Acknowledgement
Type of funding source: None
Collapse
Affiliation(s)
- J Choi
- Korea University, Anam Hospital, Seoul, Korea (Republic of)
| | - K.N Lee
- Korea University, Anam Hospital, Seoul, Korea (Republic of)
| | - Y.G Kim
- Korea University, Anam Hospital, Seoul, Korea (Republic of)
| | - J.H Jeong
- Korea University, Anam Hospital, Seoul, Korea (Republic of)
| | - H.Y Choi
- Korea University, Anam Hospital, Seoul, Korea (Republic of)
| | - Y.Y Choi
- Korea University, Anam Hospital, Seoul, Korea (Republic of)
| | - J Shim
- Korea University, Anam Hospital, Seoul, Korea (Republic of)
| | - J.O Na
- Korea University Medical Center, Seoul, Korea (Republic of)
| | - C.U Choi
- Korea University Medical Center, Seoul, Korea (Republic of)
| | - K.D Han
- The Catholic University of Korea, Biostatistics, Seoul, Korea (Republic of)
| | - Y.H Kim
- Korea University, Anam Hospital, Seoul, Korea (Republic of)
| |
Collapse
|
25
|
Cho B, Yoon SH, Lee D, Koranteng F, Tattikota SG, Cha N, Shin M, Do H, Hu Y, Oh SY, Lee D, Vipin Menon A, Moon SJ, Perrimon N, Nam JW, Shim J. Single-cell transcriptome maps of myeloid blood cell lineages in Drosophila. Nat Commun 2020; 11:4483. [PMID: 32900993 PMCID: PMC7479620 DOI: 10.1038/s41467-020-18135-y] [Citation(s) in RCA: 77] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2020] [Accepted: 08/06/2020] [Indexed: 11/22/2022] Open
Abstract
The Drosophila lymph gland, the larval hematopoietic organ comprised of prohemocytes and mature hemocytes, has been a valuable model for understanding mechanisms underlying hematopoiesis and immunity. Three types of mature hemocytes have been characterized in the lymph gland: plasmatocytes, lamellocytes, and crystal cells, which are analogous to vertebrate myeloid cells, yet molecular underpinnings of the lymph gland hemocytes have been less investigated. Here, we use single-cell RNA sequencing to comprehensively analyze heterogeneity of developing hemocytes in the lymph gland, and discover previously undescribed hemocyte types including adipohemocytes, stem-like prohemocytes, and intermediate prohemocytes. Additionally, we identify the developmental trajectory of hemocytes during normal development as well as the emergence of the lamellocyte lineage following active cellular immunity caused by wasp infestation. Finally, we establish similarities and differences between embryonically derived- and larval lymph gland hemocytes. Altogether, our study provides detailed insights into the hemocyte development and cellular immune responses at single-cell resolution. How the Drosophila lymph gland hemocytes develop and are regulated at a single-cell level is unclear. Here, the authors use single-cell RNA sequencing to show heterogeneity of developing hemocytes in the lymph gland and how they react to wasp infestation, and compare hemocytes from two independent origins.
Collapse
Affiliation(s)
- Bumsik Cho
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul, 04736, Republic of Korea
| | - Sang-Ho Yoon
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul, 04736, Republic of Korea
| | - Daewon Lee
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul, 04736, Republic of Korea
| | - Ferdinand Koranteng
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul, 04736, Republic of Korea
| | | | - Nuri Cha
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul, 04736, Republic of Korea
| | - Mingyu Shin
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul, 04736, Republic of Korea
| | - Hobin Do
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul, 04736, Republic of Korea
| | - Yanhui Hu
- Department of Genetics, Harvard Medical School, Boston, MA, 02115, USA
| | - Sue Young Oh
- Department of Oral Biology, Yonsei University, College of Dentistry, Seoul, 03722, Republic of Korea
| | - Daehan Lee
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul, 04736, Republic of Korea
| | - A Vipin Menon
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul, 04736, Republic of Korea
| | - Seok Jun Moon
- Department of Oral Biology, Yonsei University, College of Dentistry, Seoul, 03722, Republic of Korea
| | - Norbert Perrimon
- Department of Genetics, Harvard Medical School, Boston, MA, 02115, USA.,Howard Hughes Medical Institute, Boston, MA, 02115, USA
| | - Jin-Wu Nam
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul, 04736, Republic of Korea. .,Research Institute for Natural Sciences, Hanyang University, Seoul, 04736, Republic of Korea. .,Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, 04736, Republic of Korea.
| | - Jiwon Shim
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul, 04736, Republic of Korea. .,Research Institute for Natural Sciences, Hanyang University, Seoul, 04736, Republic of Korea. .,Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, 04736, Republic of Korea.
| |
Collapse
|
26
|
Reddy GR, Dillip G, Sreekanth T, Rajavaram R, Raju BDP, Nagajyothi P, Shim J. In situ engineered 0D interconnected network-like CNS decorated on Co-rich ZnCo2O4 2D nanosheets for high-performance supercapacitors. J Taiwan Inst Chem Eng 2020. [DOI: 10.1016/j.jtice.2020.08.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
27
|
Hollick RJ, McKee L, Shim J, Ramsay N, Gerring S, Reid DM, Black AJ. Introducing mobile fracture prevention services with DXA in Northern Scotland: a comparative study of three rural communities. Osteoporos Int 2020; 31:1305-1314. [PMID: 32080756 DOI: 10.1007/s00198-020-05316-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/01/2019] [Accepted: 01/23/2020] [Indexed: 11/30/2022]
Abstract
UNLABELLED Mobile fracture prevention services, with DXA, significantly improved access to care for those at high risk of fracture living in rural areas. Introduction of mobile services facilitated access to fracture liaison services and development of integrated of care pathways across community- and secondary-based care. INTRODUCTION The ageing population is growing faster in rural areas, yet most fracture prevention services are located in urban areas. As part of a wider study, evaluating the introduction of mobile fracture prevention services, we focus on whether mobile services improve access to care for those at highest risk of fracture. METHODS Services outcomes were assessed against the Royal Osteoporosis Society clinical standards for fracture liaison services. This included standardised, age-specific referral rates, FRAX 10-year probability of major osteoporotic and hip fracture of referrals, pre- and post-introduction of the mobile service across two island and one rural mainland sites. This was compared with referrals from a similar rural mainland region with local access to a comprehensive service. RESULTS Greatest impact occurred in areas with most limited service provision at baseline. Mean age of patients referred increased from 59 to 68 years (CI 6.8-10.1, p < 0.001). Referral rates increased from 2.8 to 5.4 per 1000 population between 2011 and 2018, with a 5-fold rise in those ≥ 75 years (0.4 to 2.0 per 1000). Mean FRAX 10-year risk of major osteoporotic fracture increased from 12.7 to 17.7% (CI 3.2-5.7, p < 0.001). Mean hip fracture risk probability increased from 3.0 to 5.7% (CI 2.0-3.4, p < 0.001). However, referral rates from the mobile sites remained lower than the comparator site. CONCLUSIONS Mobile fracture prevention services, including DXA, greatly improved uptake amongst high-risk individuals. Mobile services facilitated development of integrated of care pathways, including fracture liaison services, across community- and secondary-based care.
Collapse
Affiliation(s)
- R J Hollick
- Aberdeen Centre for Arthritis and Musculoskeletal Health, Epidemiology Group, University of Aberdeen, Aberdeen, UK.
| | - L McKee
- Health Services Research Unit, University of Aberdeen, Aberdeen, UK
| | - J Shim
- Aberdeen Centre for Arthritis and Musculoskeletal Health, Epidemiology Group, University of Aberdeen, Aberdeen, UK
| | - N Ramsay
- Department of Rheumatology, Aberdeen Royal Infirmary, NHS Grampian, Aberdeen, UK
| | - S Gerring
- Department of Rheumatology, Aberdeen Royal Infirmary, NHS Grampian, Aberdeen, UK
| | - D M Reid
- School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Aberdeen, UK
| | - A J Black
- Department of Rheumatology, Aberdeen Royal Infirmary, NHS Grampian, Aberdeen, UK
| |
Collapse
|
28
|
Tattikota SG, Cho B, Liu Y, Hu Y, Barrera V, Steinbaugh MJ, Yoon SH, Comjean A, Li F, Dervis F, Hung RJ, Nam JW, Ho Sui S, Shim J, Perrimon N. A single-cell survey of Drosophila blood. eLife 2020; 9:e54818. [PMID: 32396065 PMCID: PMC7237219 DOI: 10.7554/elife.54818] [Citation(s) in RCA: 103] [Impact Index Per Article: 25.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2019] [Accepted: 05/08/2020] [Indexed: 12/30/2022] Open
Abstract
Drosophila blood cells, called hemocytes, are classified into plasmatocytes, crystal cells, and lamellocytes based on the expression of a few marker genes and cell morphologies, which are inadequate to classify the complete hemocyte repertoire. Here, we used single-cell RNA sequencing (scRNA-seq) to map hemocytes across different inflammatory conditions in larvae. We resolved plasmatocytes into different states based on the expression of genes involved in cell cycle, antimicrobial response, and metabolism together with the identification of intermediate states. Further, we discovered rare subsets within crystal cells and lamellocytes that express fibroblast growth factor (FGF) ligand branchless and receptor breathless, respectively. We demonstrate that these FGF components are required for mediating effective immune responses against parasitoid wasp eggs, highlighting a novel role for FGF signaling in inter-hemocyte crosstalk. Our scRNA-seq analysis reveals the diversity of hemocytes and provides a rich resource of gene expression profiles for a systems-level understanding of their functions.
Collapse
Affiliation(s)
| | - Bumsik Cho
- Department of Life Science, Hanyang UniversitySeoulRepublic of Korea
| | - Yifang Liu
- Department of Genetics, Blavatnik Institute, Harvard Medical SchoolBostonUnited States
| | - Yanhui Hu
- Department of Genetics, Blavatnik Institute, Harvard Medical SchoolBostonUnited States
| | | | | | - Sang-Ho Yoon
- Department of Life Science, Hanyang UniversitySeoulRepublic of Korea
| | - Aram Comjean
- Department of Genetics, Blavatnik Institute, Harvard Medical SchoolBostonUnited States
| | - Fangge Li
- Department of Genetics, Blavatnik Institute, Harvard Medical SchoolBostonUnited States
| | - Franz Dervis
- Department of Genetics, Blavatnik Institute, Harvard Medical SchoolBostonUnited States
| | - Ruei-Jiun Hung
- Department of Genetics, Blavatnik Institute, Harvard Medical SchoolBostonUnited States
| | - Jin-Wu Nam
- Department of Life Science, Hanyang UniversitySeoulRepublic of Korea
| | | | - Jiwon Shim
- Department of Life Science, Hanyang UniversitySeoulRepublic of Korea
| | - Norbert Perrimon
- Department of Genetics, Blavatnik Institute, Harvard Medical SchoolBostonUnited States
- Howard Hughes Medical InstituteBostonUnited States
| |
Collapse
|
29
|
Reddy CV, Reddy IN, Ravindranadh K, Reddy KR, Shetti NP, Kim D, Shim J, Aminabhavi TM. Copper-doped ZrO 2 nanoparticles as high-performance catalysts for efficient removal of toxic organic pollutants and stable solar water oxidation. J Environ Manage 2020; 260:110088. [PMID: 31941628 DOI: 10.1016/j.jenvman.2020.110088] [Citation(s) in RCA: 58] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2019] [Revised: 01/03/2020] [Accepted: 01/03/2020] [Indexed: 05/06/2023]
Abstract
Doping effect on the photoelectrochemical (PEC) water splitting efficiency and photocatalytic activities of ZrO2 under visible light are reported. The XRD analysis revealed that pure, 0.1 and 0.3 mol% doped samples showed mixed crystal phases (tetragonal and monoclinic) and 0.5 mol% doped sample showed a pure tetragonal phase. Under visible light, 90% of methyl orange dye degradation was achieved with in 100 min. Moreover, the optimal doped sample showed a significant degradation rate constant over other samples. The doped photoelectrodes display a better PEC water oxidation performance over pure photoelectrode. Furthermore, the optimal doped (0.3 mol %) electrode shows 0.644 mAcm-2 photocurrent density, corresponding to an approximate 50-fold enhancement over pure electrode (0.013 mAcm-2). The optimized doped sample achieved 98% degradation of methyl orange within 100 min of light irradiation. The superior PEC water oxidation and photocatalytic activity of optimal doped samples under visible light are credited to suitable doping content, crystalline size, greater surface area, suitable bandgap, a lower charge carrying resistance, surface properties and the ability for decreasing the charge carrier's recombination rate.
Collapse
Affiliation(s)
- Ch Venkata Reddy
- School of Mechanical Engineering, Yeungnam University, Gyeongsan, 712-749, South Korea
| | - I Neelakanta Reddy
- School of Mechanical Engineering, Yeungnam University, Gyeongsan, 712-749, South Korea
| | - K Ravindranadh
- School of Mechanical Engineering, Yeungnam University, Gyeongsan, 712-749, South Korea
| | - Kakarla Raghava Reddy
- School of Chemical and Biomolecular Engineering, The University of Sydney, Sydney, NSW 2006, Australia
| | - Nagaraj P Shetti
- Center for Electrochemical Science & Materials, Department of Chemistry, K.L.E. Institute of Technology, Hubballi, 580 030, India
| | - D Kim
- System Technology Group, Korea Institute of Industrial Technology (KITECH) Gyeongbuk-do, 38822, South Korea.
| | - J Shim
- School of Mechanical Engineering, Yeungnam University, Gyeongsan, 712-749, South Korea.
| | - Tejraj M Aminabhavi
- Department of Pharmaceutical Engineering, SET's College of Pharmacy, Dharwad, Karnataka, 580 002, India.
| |
Collapse
|
30
|
Abstract
Drosophila hematopoiesis is comparable to mammalian differentiation of myeloid lineages, and therefore, has been a useful model organism in illustrating the molecular and genetic basis for hematopoiesis. Multiple novel regulators and signals have been uncovered using the tools of Drosophila genetics. A Runt domain protein, lozenge, is one of the first players recognized and closely studied in the hematopoietic lineage specification. Here, we explore the role of lozenge in determination of prohemocytes into a special class of hemocyte, namely the crystal cell, and discuss molecules and signals controlling the lozenge function and its implication in immunity and stress response. Given the highly conserved nature of Runt domain in both invertebrates and vertebrates, studies in Drosophila will enlighten our perspectives on Runx-mediated development and pathologies.
Collapse
Affiliation(s)
| | - Nuri Cha
- Department of Life Science, Hanyang University, Seoul 04763, Korea
| | - Mingyu Shin
- Department of Life Science, Hanyang University, Seoul 04763, Korea
| | - Jiwon Shim
- Department of Life Science, Hanyang University, Seoul 04763, Korea
- Research Institute for Natural Science, Hanyang University, Seoul 04763, Korea
- Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul 0476, Korea
| |
Collapse
|
31
|
Shin M, Cha N, Koranteng F, Cho B, Shim J. Subpopulation of Macrophage-Like Plasmatocytes Attenuates Systemic Growth via JAK/STAT in the Drosophila Fat Body. Front Immunol 2020; 11:63. [PMID: 32082322 PMCID: PMC7005108 DOI: 10.3389/fimmu.2020.00063] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Accepted: 01/10/2020] [Indexed: 12/14/2022] Open
Abstract
Drosophila hemocytes, like those of mammals, are given rise from two distinctive phases during both the embryonic and larval hematopoiesis. Embryonically derived hemocytes, mostly composed of macrophage-like plasmatocytes, are largely identified by genetic markers. However, the cellular diversity and distinct functions of possible subpopulations within plasmatocytes have not been explored in Drosophila larvae. Here, we show that larval plasmatocytes exhibit differential expressions of Hemolectin (Hml) and Peroxidasin (Pxn) during development. Moreover, removal of plasmatocytes by overexpressing pro-apoptotic genes, hid and reaper in Hml-positive plasmatocytes, feeding high sucrose diet, or wasp infestation results in increased circulating hemocytes that are Hml-negative. Interestingly these Hml-negative plasmatocytes retain Pxn expression, and animals expressing Hml-negative and Pxn-positive subtype largely attenuate growth and abrogate metabolism. Furthermore, elevated levels of a cytokine, unpaired 3, are detected when Hml-positive hemocytes are ablated, which in turn activates JAK/STAT activity in several tissues including the fat body. Finally, we observed that insulin signaling is inhibited in this background, which can be recovered by concurrent loss of upd3. Overall, this study highlights heterogeneity in Drosophila plasmatocytes and a functional plasticity of each subtype, which reaffirms extension of their role beyond immunity into metabolic regulation for cooperatively maintaining internal homeostatic balance.
Collapse
Affiliation(s)
- Mingyu Shin
- Department of Life Science, College of Natural Science, Hanyang University, Seoul, South Korea
| | - Nuri Cha
- Department of Life Science, College of Natural Science, Hanyang University, Seoul, South Korea
| | - Ferdinand Koranteng
- Department of Life Science, College of Natural Science, Hanyang University, Seoul, South Korea
| | - Bumsik Cho
- Department of Life Science, College of Natural Science, Hanyang University, Seoul, South Korea
| | - Jiwon Shim
- Department of Life Science, College of Natural Science, Hanyang University, Seoul, South Korea
- Research Institute for Natural Science, College of Natural Science, Hanyang University, Seoul, South Korea
- Research Institute for Convergence of Basic Sciences, College of Natural Science, Hanyang University, Seoul, South Korea
| |
Collapse
|
32
|
Sreekanth TVM, Nagajyothi PC, Devarayapalli KC, Shim J, Yoo K. Lilac flower-shaped ZnCo2O4electrocatalyst for efficient methanol oxidation and oxygen reduction reactions in an alkaline medium. CrystEngComm 2020. [DOI: 10.1039/d0ce00024h] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A ZnCo2O4electrocatalyst for the efficient MOR and ORR.
Collapse
Affiliation(s)
- T. V. M. Sreekanth
- School of Mechanical Engineering
- Yeungnam University
- Gyeongsan-38541
- Republic of Korea
| | - P. C. Nagajyothi
- School of Mechanical Engineering
- Yeungnam University
- Gyeongsan-38541
- Republic of Korea
| | - K. C. Devarayapalli
- School of Mechanical Engineering
- Yeungnam University
- Gyeongsan-38541
- Republic of Korea
| | - J. Shim
- School of Mechanical Engineering
- Yeungnam University
- Gyeongsan-38541
- Republic of Korea
| | - K. Yoo
- School of Mechanical Engineering
- Yeungnam University
- Gyeongsan-38541
- Republic of Korea
| |
Collapse
|
33
|
Drakaki A, Luhn P, Wakelee H, Dhillon P, Kent M, Shim J, Degaonkar V, Hoang T, McNally V, Chui S, Gutzmer R. Association of systemic corticosteroids with overall survival in patients receiving cancer immunotherapy for advanced melanoma, non-small cell lung cancer or urothelial cancer in routine clinical practice. Ann Oncol 2019. [DOI: 10.1093/annonc/mdz449.001] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
|
34
|
Park YM, Roh SY, Lee DI, Shim J, Choi JI, Park SW, Kim YH. P2860The effects of single nucleotide polymorphisms in Korean patients with early-onset lone atrial fibrillation after catheter ablation. Eur Heart J 2019. [DOI: 10.1093/eurheartj/ehz748.1169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Background
The status of SNPs among patients with extremely early-onset lone AF and the association with outcome of catheter ablation has not been evaluated before. This study evaluated the status of single nucleotide polymorphisms (SNPs) in Korean patients with early-onset (<40 years old) lone AF and effects on the outcome after catheter ablation.
Methods
A total of 89 consecutive patients (mean age 35.7±3.7 years, 81 males) with drug-refractory AF (paroxysmal 64.0%) who underwent catheter ablation were included. Sixteen SNPs including rs13376333, rs10465885, rs10033464, rs2200733, rs17042171, rs6843082, rs7193343, rs2106261, rs17570669, rs853445, rs11708996, rs6800541, rs251253, rs3807989, rs11047543 and rs3825214 were genotyped. Serial 48-day Holter electrocardiographic recordings were acquired to detect AF recurrences during long-term follow up.
Results
Wild type of rs7193343 [CC; 0/7 (0%) vs. CT; 22/40 (55.0%) vs. TT; 18/41 (43.9%), p=0.025] and rs11047543 [GG; 26/69 (37.7%) vs. GA; 13/18 (72.2%) vs. AA; 0/0, p=0.009] and homozygous variant of rs3825214 [AA; 16/31 (51.6%) vs. AG; 22/43 (51.2%) vs. GG; 2/13 (15.4%), p=0.05] were significantly associated with lower rate of late recurrence. When the patients were assigned to four groups according to the number of risk alleles (n=0–3), Kaplan-Meier survival analysis showed incremental prognostic value according to the number of variant alleles (p=0.002) (Figure 1).
Figure 1
Conclusions
Polymorphisms on rs7193343, rs3825214 and rs11047543 modulate the risk for AF recurrence after catheter ablation during long term follow up in Korean patients with early-onset lone AF.
Acknowledgement/Funding
Korean Society of Cardiology
Collapse
Affiliation(s)
- Y M Park
- Gil Hospital, Gachon University of Medicine & Science, Incheon, Korea (Republic of)
| | - S Y Roh
- Korea University Anam Hospital, Seoul, Korea (Republic of)
| | - D I Lee
- Korea University Anam Hospital, Seoul, Korea (Republic of)
| | - J Shim
- Korea University Anam Hospital, Seoul, Korea (Republic of)
| | - J.-I Choi
- Korea University Anam Hospital, Seoul, Korea (Republic of)
| | - S W Park
- Sejong General Hospital, Bucheon-Shi, Korea (Republic of)
| | - Y.-H Kim
- Sejong General Hospital, Bucheon-Shi, Korea (Republic of)
| |
Collapse
|
35
|
Lim HE, Ahn J, Han SJ, Shim J, Kim YH, Choi EK, Oh S, Shin SY, Lip GYH. P1026Risk factors for the occurrence of stroke after atrial fibrillation ablation. Eur Heart J 2019. [DOI: 10.1093/eurheartj/ehz747.0617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Background
Risk factors for the occurrence of embolic stroke (ES) after atrial fibrillation (AF) ablation have not been fully elucidated. Our aim was to assess incidence of ES during long-term follow-up following AF ablation and to identify predicting factors associated with post-ablation ES.
Methods
We enrolled patients who experienced ES after AF ablation and body mass index-matched controls from AF ablation registries. Epicardial adipose tissue (EAT) was assessed using multislice computed tomography prior to ablation.
Results
A total of 3,464 patients who underwent AF ablation were recruited. During a mean follow-up of 47.2 months, ES occurred in 47 patients (1.36%) with a mean CHA2DS2-VAS score of 2.15 and overall incidence of ES was 0.34 per 100 patients/year. Compared with control group (n=190), ES group had more higher prior thromboembolic event and AF recurrence rates, larger LA size, lower creatinine clearance rate (CCr), and greater total and periatrial EAT volumes although no differences in AF type, CHA2DS2-VASc score, ablation extent, and anti-thrombotics use were found. On multivariate regression analysis, a prior history of thromboembolism, CCr, and periatrial EAT volume were independently associated with ES occurrence after AF ablation.
Cox regression analysis Risk factor Univariate Multivariate HR (95% CI) p value HR (95% CI) p value Age 1.017 (0.984–1.051) 0.31 Prior thromboembolism 2.488 (1.134–5.460) 0.023 2.916 (1.178–7.219) 0.021 CHA2DS2-VASc score 1.139 (0.899–1.445) 0.282 CCr 0.984 (0.970–0.999) 0.038 0.982 (0.996–0.998) 0.029 LA diameter (mm) 1.070 (1.012–1.130) 0.017 1.072 (0.999–1.150) 0.054 EAT_total (ml) 1.020 (1.010–1.029) <0.001 1.008 (0.993–1.023) 0.297 EAT_periatrial (ml) 1.085 (1.045–1.126) <0.001 1.065 (1.005–1.128) 0.032 PVI + additional ablation 0.846 (0.460–1.557) 0.592 No anticoagulant use 0.651 (0.346–1.226) 0.184 Recurrence 2.011 (1.007–4.013) 0.048 1.240 (0.551–2.793) 0.603 CCr, creatinine clearance rate; EAT, epicardial adipose tissue; LA, left atrium; PVI, pulmonary vein isolation.
K-M curve for stroke-free survival
Conclusions
Incidence of ES after AF ablation was lower than expected rate based on CHA2DS2-VASc score even though anticoagulants use was limited. Periatrial EAT volume, a prior thromboembolism event, and CCr were independent factors in predicting ES irrespective of AF recurrence and CHA2DS2-VASc score in patients who underwent AF ablation.
Collapse
Affiliation(s)
- H E Lim
- Hallym University Sacred Heart Hospital, Cardiology, Anyang-Si, Gyeonggi-Do, Korea (Republic of)
| | - J Ahn
- Pusan National University Hospital, Cardiology, Pusan, Korea (Republic of)
| | - S J Han
- Hallym University Sacred Heart Hospital, Cardiology, Anyang-Si, Gyeonggi-Do, Korea (Republic of)
| | - J Shim
- Korea University Anam Hospital, Cardiology, Seoul, Korea (Republic of)
| | - Y H Kim
- Korea University Anam Hospital, Cardiology, Seoul, Korea (Republic of)
| | - E K Choi
- Seoul National University Hospital, Cardiology, Seoul, Korea (Republic of)
| | - S Oh
- Seoul National University Hospital, Cardiology, Seoul, Korea (Republic of)
| | - S Y Shin
- Chung-Ang University Hospital, Cardiology, Seoul, Korea (Republic of)
| | - G Y H Lip
- Liverpool Heart and Chest Hospital, Cardiovascular Science Centre, Liverpool, United Kingdom
| |
Collapse
|
36
|
Cho S, Kim T, Uhm J, Cha M, Lee J, Park J, Park J, Kang K, Shim J, Kim J, Park H, Choi E, Kim J, Lee Y, Joung B. P3762The impact of type and burden of atrial fibrillation on stroke occurrence in patients with atrial fibrillation: from a prospective cohort of atrial fibrillation patients (CODE-AF Registry). Eur Heart J 2019. [DOI: 10.1093/eurheartj/ehz745.0614] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Abstract
Background and purpose
Although several studies reported that stroke risk in patients with paroxysmal atrial fibrillation (AF) is similar to those with persistent or permanent AF, there is still controversy on the relationship of AF type and stroke occurrence. We investigated the effect of AF type on AF burden and stroke risk in patients with non-valvular AF.
Methods
Within the CODE-AF prospective, outpatient registry (COmparison study of Drugs for symptom control and complication prEvention of Atrial Fibrillation), we identified 8,883 patients ≥18 years of age with non-valvular AF and eligible follow-up visits. We compared AF burden and stroke risk among patients with 3 types of AF: paroxysmal (n=5,808) or persistent (n=2,806) or permanent (n=269).
Results
The median age of the overall population was 68.0 (interquartile range, 60.0–75.0); 36.0% were female. Patients with persistent and permanent AF were older and had higher CHA2DS2-VASc scores and anticoagulation rate than those with paroxysmal AF. Compared with permanent AF (5.2±16.4%), the arrhythmic burden of AF on 24hrs Holter monitoring was significantly lower in paroxysmal AF (2.1±7.2%, p<0.001) and persistent AF (2.0±7.5%, p<0.001). During median follow-up period of 1.38 years (interquartile range: 0.96–1.67), total 82 (0.92%) patients experienced ischemic stroke with incidence rates of 0.51, 1.04 and 1.69 events per 100 person-years for paroxysmal, persistent and permanent AF, respectively. Compared with paroxysmal AF, the risk of ischemic stroke was increased in persistent AF with clinical variable adjusted hazard ratio (aHR) of 1.94 (95% confidence intervals [CI], 1.23–3.07; P=0.005) and permanent AF with aHR of 2.64 (95% CI, 1.09–6.41; P=0.03).
AF type and HR of stroke occurrence Paroxysmal (n=5,808) Persistent (n=2,806) Permanent (n=269) Stoke events 39 37 6 Person years (PYs) 7673 3544 356 /100 PYs 0.51 1.04 1.69 HR (95% CI), p-value HR (95% CI), p-value HR (95% CI), p-value Unadjusted HR 1 (Reference) 2.05 (1.27–3.31), 0.003 3.32 (1.15–7.90), 0.02 Clinical variables adjusted HR 1 (Reference) 1.94 (1.23–3.07), 0.005 2.64 (1.09–6.41), 0.03 PYs: Person years; HR: Hazard ratio.
Conclusion
Persistent and permanent AF was associated with the increased risk of stroke than paroxysmal AF, after adjustment of clinical variables including age, sex, comorbidities and anticoagulation rate. These results suggest that AF type and burden might be related with the risk of ischemic stroke and should be considered in the stroke prevention of AF.
Collapse
Affiliation(s)
- S Cho
- Severance Hospital, Division of Cardiology, Department of Internal Medicine, Seoul, Korea (Republic of)
| | - T Kim
- Severance Hospital, Division of Cardiology, Department of Internal Medicine, Seoul, Korea (Republic of)
| | - J Uhm
- Severance Hospital, Division of Cardiology, Department of Internal Medicine, Seoul, Korea (Republic of)
| | - M Cha
- Seoul National University Hospital, Department of Internal Medicine, Seoul, Korea (Republic of)
| | - J Lee
- Kyung Hee Medical Center, Division of Cardiology, Department of Internal Medicine, Seoul, Korea (Republic of)
| | - J Park
- Ewha University, Department of Cardiology, School of Medicine, Seoul, Korea (Republic of)
| | - J Park
- Hanyang University, Department of Cardiology, Seoul, Korea (Republic of)
| | - K Kang
- Eulji University Hospital, Division of Cardiology, Deajeon, Korea (Republic of)
| | - J Shim
- Korea University, Division of Cardiology, Department of Internal Medicine, Seoul, Korea (Republic of)
| | - J Kim
- Asan Medical Center, Heart Institute, Seoul, Korea (Republic of)
| | - H Park
- Chonnam National University Hospital, Department of Cardiology, Gwangju, Korea (Republic of)
| | - E Choi
- Seoul National University Hospital, Department of Internal Medicine, Seoul, Korea (Republic of)
| | - J Kim
- Kyung Hee Medical Center, Division of Cardiology, Department of Internal Medicine, Seoul, Korea (Republic of)
| | - Y Lee
- Catholic University of Daegu, Division of Cardiology, Department of Internal Medicine, Daegu, Korea (Republic of)
| | - B Joung
- Severance Hospital, Division of Cardiology, Department of Internal Medicine, Seoul, Korea (Republic of)
| |
Collapse
|
37
|
Kim E, Oh H, Shim J, Kang S. P11.32 Combined effects of niclosamide and temozolomide against human glioblastoma tumorspheres. Neuro Oncol 2019. [DOI: 10.1093/neuonc/noz126.178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
BACKGROUND
Glioblastoma (GBM) is the most aggressive type of brain tumor and has poor survival outcomes, even after a combination of surgery, radiotherapy, and chemotherapy. Temozolomide is the only agent that has been shown to be effective against GBM, suggesting that combination of temozolomide with other agents may be more effective. Niclosamide, an FDA approved anthelmintic agent, has shown anti-cancer effects against human colon, breast, prostate cancers as well as GBM. However, the efficacy of the combination of niclosamide with temozolomide against GBM tumorspheres (TSs) has not been determined. We hypothesized that the combined treatment could effectively suppress GBM TSs.
MATERIAL AND METHODS
Effects of niclosamide and/or temozolomide on GBM TSs were evaluated. Viability, stemness, and invasive properties of GBM TSs were examined. In vivo anticancer efficacy was tested in a mouse orthotopic xenograft model.
RESULTS
The combination of niclsoamide and temozolomide significantly inhibited the viability, sphere formation, expression of stemness-related proteins, and invasive properties of GBM TSs. This combination significantly down-regulated the expression of epithelial mesenchymal transition-related proteins. Bioluminescence imaging further showed that compared with either agent alone, combination of niclosamide and temozolomide significantly reduced the tumor burden in orthotopic xenograft models.
CONCLUSION
The combination of niclosamide and temozolomide effectively decreased the stemness and invasive properties of GBM TSs, suggesting that this regimen may be therapeutically effective in treating patients with GBM.
Collapse
Affiliation(s)
- E Kim
- Yonsei University College of Medicine, Seoul, Korea, Republic of
| | - H Oh
- Yonsei University College of Medicine, Seoul, Korea, Republic of
| | - J Shim
- Yonsei University College of Medicine, Seoul, Korea, Republic of
| | - S Kang
- Yonsei University College of Medicine, Seoul, Korea, Republic of
| |
Collapse
|
38
|
Abstract
AIMS Responsiveness to clinically important change is a key feature of any outcome measure. Throughout Europe, health-related quality of life following total knee arthroplasty (TKA) is routinely measured with EuroQol five-dimension (EQ-5D) questionnaires. The Patient-Reported Outcomes Measurement Information System 10-Question Short-Form (PROMIS-10 Global Health) score is a new general heath outcome tool which is thought to offer greater responsiveness. Our aim was to compare these two tools. PATIENTS AND METHODS We accessed data from a prospective multicentre cohort study in the United Kingdom, which evaluated outcomes following TKA. The median age of the 721 patients was 69.0 years (interquartile range, 63.3 to 74.6). There was an even division of sex, and approximately half were educated to secondary school level. The preoperative EQ-5D, PROMIS-10, and Oxford Knee Scores (OKS) were available and at three, six, and 12 months postoperatively. Internal responsiveness was assessed by standardized response mean (SRM) and effect size (Cohen's d). External responsiveness was assessed by correlating change scores of the EQ-5D and PROMIS-10, with the minimal clinically important difference (MCID) of the OKS. Receiver operating characteristic (ROC) curves were used to assess the ability of change scores to discriminate between improved and non-improved patients. RESULTS All measures showed significant changes between the preoperative score and the various postoperative times (p < 0.001). Most improvement occurred during the first three months, with small but significant changes between three and six months, and no further change between six and 12 months postoperatively. SRM scores for EQ-5D, PROMIS-10, and OKS were large (> 0.8). ROC curves showed that both EQ-5D and PROMIS-10 were able to discriminate between patients who achieved the OKS MCID and those who did not (area under the curve (AUC) of 0.7 to 0.82). CONCLUSION The PROMIS-10 physical health tool showed greater responsiveness to change than the EQ-5D, most probably due to the additional questions on physical health parameters that are more susceptible to modification following TKA. The EQ-5D was, however, shown to be sensitive to clinically meaningful change following TKA, and provides the additional ability to calculate health economic utility scores. It is likely, therefore, that EQ-5D will continue to be the global health metric of choice in the United Kingdom. Cite this article: Bone Joint J 2019;101-B:832-837.
Collapse
Affiliation(s)
- J Shim
- Epidemiology Group, School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Aberdeen, UK.,Aberdeen Centre for Arthritis and Musculoskeletal Health, University of Aberdeen, Aberdeen, UK
| | - D F Hamilton
- Department of Orthopaedics and Trauma, School of Clinical Sciences, University of Edinburgh, Edinburgh, UK
| |
Collapse
|
39
|
On J, Shim J, Aly EH. Systematic review and meta-analysis on outcomes of salvage therapy in patients with tumour recurrence during 'watch and wait' in rectal cancer. Ann R Coll Surg Engl 2019; 101:441-452. [PMID: 30855163 DOI: 10.1308/rcsann.2019.0018] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
Abstract
INTRODUCTION The 'watch and wait' approach has recently emerged as an alternative approach for managing patients with complete clinical response in rectal cancer. However, less is understood whether the intervention is associated with a favourable outcome among patients who require salvage therapy following local recurrence. MATERIALS AND METHODS A comprehensive systematic search was performed using EMBASE, PubMed, MEDLINE, Journals@Ovid as well as hand searches; published between 2004 and 2018, to identify studies where outcomes of patients undergoing watch and wait were compared with conventional surgery. Study quality was assessed using the Newcastle-Ottawa assessment scale. The main outcome was relative risks for overall and disease specific mortality in salvage therapy. RESULTS Nine eligible studies were included in the meta-analysis. Of 248 patients who followed the watch and wait strategy, 10.5% had salvage therapy for recurrent disease. No statistical heterogeneity was found in the results. The relative risk of overall mortality in the salvage therapy group was 2.42 (95% confidence interval 0.96-6.13) compared with the group who had conventional surgery, but this was not statistically significant (P > 0.05). The relative risk of disease specific mortality in salvage therapy was 2.63 (95% confidence interval 0.81-8.53). CONCLUSION Our findings demonstrated that there was no significant difference in overall and disease specific mortality in patients who had salvage treatment following recurrence of disease in the watch and wait group compared with the standard treatment group. However, future research into the oncological safety of salvage treatment is needed.
Collapse
Affiliation(s)
- J On
- Laparoscopic Colorectal Surgery and Training Unit, Aberdeen Royal Infirmary, Aberdeen, UK
| | - J Shim
- Epidemiology Group, University of Aberdeen, Aberdeen, UK
| | - E H Aly
- Laparoscopic Colorectal Surgery and Training Unit, Aberdeen Royal Infirmary, Aberdeen, UK
| |
Collapse
|
40
|
Sreekanth T, Basivi PK, Nagajyothi P, Dillip G, Shim J, Ko T, Yoo K. Determination of surface properties and Gutmann’s Lewis acidity–basicity parameters of thiourea and melamine polymerized graphitic carbon nitride sheets by inverse gas chromatography. J Chromatogr A 2018; 1580:134-141. [DOI: 10.1016/j.chroma.2018.10.042] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2018] [Revised: 10/18/2018] [Accepted: 10/22/2018] [Indexed: 11/26/2022]
|
41
|
Cho B, Spratford CM, Yoon S, Cha N, Banerjee U, Shim J. Systemic control of immune cell development by integrated carbon dioxide and hypoxia chemosensation in Drosophila. Nat Commun 2018; 9:2679. [PMID: 29992947 PMCID: PMC6041325 DOI: 10.1038/s41467-018-04990-3] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2018] [Accepted: 06/08/2018] [Indexed: 02/04/2023] Open
Abstract
Drosophila hemocytes are akin to mammalian myeloid blood cells that function in stress and innate immune-related responses. A multi-potent progenitor population responds to local signals and to systemic stress by expanding the number of functional blood cells. Here we show mechanisms that demonstrate an integration of environmental carbon dioxide (CO2) and oxygen (O2) inputs that initiate a cascade of signaling events, involving multiple organs, as a stress response when the levels of these two important respiratory gases fall below a threshold. The CO2 and hypoxia-sensing neurons interact at the synaptic level in the brain sending a systemic signal via the fat body to modulate differentiation of a specific class of immune cells. Our findings establish a link between environmental gas sensation and myeloid cell development in Drosophila. A similar relationship exists in humans, but the underlying mechanisms remain to be established.
Collapse
Affiliation(s)
- Bumsik Cho
- Department of Life Science, College of Natural Science, Hanyang University, Seoul, 04763, Republic of Korea
| | - Carrie M Spratford
- Department of Molecular, Cell and Developmental Biology, University of California Los Angeles, Los Angeles, CA, 90095, USA
| | - Sunggyu Yoon
- Department of Life Science, College of Natural Science, Hanyang University, Seoul, 04763, Republic of Korea
| | - Nuri Cha
- Department of Life Science, College of Natural Science, Hanyang University, Seoul, 04763, Republic of Korea
| | - Utpal Banerjee
- Department of Molecular, Cell and Developmental Biology, University of California Los Angeles, Los Angeles, CA, 90095, USA.
- Molecular Biology Institute, University of California Los Angeles, Los Angeles, CA, 90095, USA.
- Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research, University of California Los Angeles, Los Angeles, CA, 90095, USA.
| | - Jiwon Shim
- Department of Life Science, College of Natural Science, Hanyang University, Seoul, 04763, Republic of Korea.
- Research Institute for Natural Science, Hanyang University, Seoul, 04763, Republic of Korea.
- Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, 04763, Republic of Korea.
| |
Collapse
|
42
|
Shim J, Kim J, Won J. Abstract No. 672 Suitability of femoseal vascular closure device for closure of antegrade access in common femoral artery. J Vasc Interv Radiol 2018. [DOI: 10.1016/j.jvir.2018.01.717] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
|
43
|
Shim J, Min KJ, Kim YG, Oh SK, Park HS, Lee KN, Choi JI, Kim YH. P861Outcomes of catheter ablation for longstanding persistent atrial fibrillation with unsuccessful electrical cardioversion. Europace 2018. [DOI: 10.1093/europace/euy015.464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- J Shim
- Korea University Anam Hospital, Cardiology, Seoul, Korea Republic of
| | - K J Min
- Korea University Anam Hospital, Cardiology, Seoul, Korea Republic of
| | - Y G Kim
- Korea University Anam Hospital, Cardiology, Seoul, Korea Republic of
| | - S K Oh
- Korea University Anam Hospital, Cardiology, Seoul, Korea Republic of
| | - H S Park
- Korea University Anam Hospital, Cardiology, Seoul, Korea Republic of
| | - K N Lee
- Korea University Anam Hospital, Cardiology, Seoul, Korea Republic of
| | - J I Choi
- Korea University Anam Hospital, Cardiology, Seoul, Korea Republic of
| | - Y H Kim
- Korea University Anam Hospital, Cardiology, Seoul, Korea Republic of
| |
Collapse
|
44
|
Yu HT, Shin DG, Shim J, Nam GB, Yoo WW, Lee JH, Kim TH, Uhm JS, Joung B, Lee MH, Kim YH, Pak HN. P358Efficacy and safety of unilateral groin puncture with single trans-septal catheter ablation for paroxysmal atrial fibrillation: A multi-center prospective randomized study. Europace 2018. [DOI: 10.1093/europace/euy015.169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- H T Yu
- Yonsei University College of Medicine, Division of Cardiology, Seoul, Korea Republic of
| | - D G Shin
- GangNeung Asan Hospital, GangNeung, Korea Republic of
| | - J Shim
- Korea University Cardiovascular Center, Seoul, Korea Republic of
| | - G B Nam
- Asan Medical Center, Seoul, Korea Republic of
| | - W W Yoo
- Yonsei University College of Medicine, Division of Cardiology, Seoul, Korea Republic of
| | - J H Lee
- Asan Medical Center, Seoul, Korea Republic of
| | - T H Kim
- Yonsei University College of Medicine, Division of Cardiology, Seoul, Korea Republic of
| | - J S Uhm
- Yonsei University College of Medicine, Division of Cardiology, Seoul, Korea Republic of
| | - B Joung
- Yonsei University College of Medicine, Division of Cardiology, Seoul, Korea Republic of
| | - M H Lee
- Yonsei University College of Medicine, Division of Cardiology, Seoul, Korea Republic of
| | - Y H Kim
- Korea University Cardiovascular Center, Seoul, Korea Republic of
| | - H N Pak
- Yonsei University College of Medicine, Division of Cardiology, Seoul, Korea Republic of
| |
Collapse
|
45
|
Kim S, Hwang C, Lee JW, Shim J, Sohn I. Support Vector Machine Quantile Regression for Detecting Differentially Expressed Genes in Microarray Analysis. Methods Inf Med 2018. [DOI: 10.3414/me0396] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Summary
Objectives:
One of the main objectives of microarray analysis is to identify genes differentially expressed under two distinct experimental conditions. This task is complicated by the noisiness of data and the large number of genes that are examined. Fold change (FC) based gene selection often misleads because error variability for each gene is heterogeneous in different intensity ranges. Several statistical methods have been suggested, but some of them result in high false positive rates because they make very strong parametric assumptions.
Methods:
We present support vector quantile regression (SVMQR) using iterative reweighted least squares (IRWLS) procedure based on the Newton method instead of usual quadratic programming algorithms. This procedure makes it possible to derive the generalized approximate cross validation (GACV) method for choosing the parameters which affect the performance of SVMAR. We propose SVMQR based on a novel method for identifying differentially expressed genes with a small number of replicated microarrays.
Results:
We applied SVMQR to both three biological dataset and simulated dataset and showed that it performed more reliably and consistently than FC-based gene selection, Newton’s method based on the posterior odds of change, or the nonparametric t-test variant implemented in significance analysis of microarrays (SAM).
Conclusions:
The SVMQR method was an exploratory method for cDNA microarray experiments to identify genes with different expression levels between two types of samples (e.g., tumor versus normal tissue). The SVMQR method performed well in the situation where error variability for each gene was heterogeneous in intensity ranges.
Collapse
|
46
|
MacEwan JP, Gill TM, Johnson K, Doctor J, Sullivan J, Shim J, Goldman DP. Measuring Sarcopenia Severity in Older Adults and the Value of Effective Interventions. J Nutr Health Aging 2018; 22:1253-1258. [PMID: 30498834 PMCID: PMC6302764 DOI: 10.1007/s12603-018-1104-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2018] [Accepted: 04/30/2018] [Indexed: 11/25/2022]
Abstract
OBJECTIVES Little is known about the severity and long-term health and economic consequences of sarcopenia. We developed a sarcopenia index to measure severity in older Americans and estimated the long-term societal benefits generated by effective interventions to mitigate severity. DESIGN Using a micro-simulation model, we quantified the potential societal value generated in the US in 2010-2040 by reductions in sarcopenia severity in older adults. All analyses were performed in Stata and SAS. SETTING AND PARTICIPANTS Secondary data from the National Health and Nutrition Examination Survey (NHANES) (N = 1634) and Health and Retirement Study (HRS) (N = 952) were used to develop a sarcopenia severity index in older adults. MEASUREMENTS Multi-trait multi-method and factor analyses were used to validate and calibrate the sarcopenia severity index, which was modeled as a function of gait speed, walking without an assistive device, and moderate physical activity. RESULTS In representative elderly populations, reducing sarcopenia severity by improving gait speed by 0.1 m/s in those with gait speed under 0.8 m/s generated a cumulative benefit of $65B by 2040 (2015 dollars). Improving walking ability in those with walking difficulty generated cumulative social benefit of $787B by 2040. CONCLUSIONS Reducing sarcopenia severity would generate significant health and economic benefits to society-almost $800B in the most optimistic scenarios.
Collapse
Affiliation(s)
- J P MacEwan
- Joanna P. MacEwan, Precision Health Economics, 11100 Santa Monica Blvd. Suite 500, Los Angeles, CA 90025, Phone: 310-984-7718,
| | | | | | | | | | | | | |
Collapse
|
47
|
Yoon S, Cho B, Shin M, Koranteng F, Cha N, Shim J. Iron Homeostasis Controls Myeloid Blood Cell Differentiation in Drosophila. Mol Cells 2017; 40:976-985. [PMID: 29237257 PMCID: PMC5750716 DOI: 10.14348/molcells.2017.0287] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2017] [Accepted: 11/12/2017] [Indexed: 02/04/2023] Open
Abstract
Iron is an essential divalent ion for aerobic life. Life has evolved to maintain iron homeostasis for normal cellular and physiological functions and therefore imbalances in iron levels exert a wide range of consequences. Responses to iron dysregulation in blood development, however, remain elusive. Here, we found that iron homeostasis is critical for differentiation of Drosophila blood cells in the larval hematopoietic organ, called the lymph gland. Supplementation of an iron chelator, bathophenanthroline disulfate (BPS) results in an excessive differentiation of the crystal cell in the lymph gland. This phenotype is recapitulated by loss of Fer1HCH in the intestine, indicating that reduced levels of systemic iron enhances crystal cell differentiation. Detailed analysis of Fer1HCH-tagged-GFP revealed that Fer1HCH is also expressed in the hematopoietic systems. Lastly, blocking Fer1HCH expression in the mature blood cells showed marked increase in the blood differentiation of both crystal cells and plasmatocytes. Thus, our work suggests a relevance of systemic and local iron homeostasis in blood differentiation, prompting further investigation of molecular mechanisms underlying iron regulation and cell fate determination in the hematopoietic system.
Collapse
Affiliation(s)
- Sunggyu Yoon
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul 04763,
Korea
| | - Bumsik Cho
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul 04763,
Korea
| | - Mingyu Shin
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul 04763,
Korea
| | - Ferdinand Koranteng
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul 04763,
Korea
| | - Nuri Cha
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul 04763,
Korea
| | - Jiwon Shim
- Department of Life Sciences, College of Natural Science, Hanyang University, Seoul 04763,
Korea
- Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul 04763,
Korea
- Research Institute for Natural Science, Hanyang University, Seoul 04763,
Korea
| |
Collapse
|
48
|
Kim S, Nahm M, Kim N, Kwon Y, Kim J, Choi S, Choi EY, Shim J, Lee C, Lee S. Graf regulates hematopoiesis through GEEC endocytosis of EGFR. Development 2017; 144:4159-4172. [PMID: 28993397 DOI: 10.1242/dev.153288] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2017] [Accepted: 10/02/2017] [Indexed: 12/24/2022]
Abstract
GTPase regulator associated with focal adhesion kinase 1 (GRAF1) is an essential component of the GPI-enriched endocytic compartment (GEEC) endocytosis pathway. Mutations in the human GRAF1 gene are associated with acute myeloid leukemia, but its normal role in myeloid cell development remains unclear. We show that Graf, the Drosophila ortholog of GRAF1, is expressed and specifically localizes to GEEC endocytic membranes in macrophage-like plasmatocytes. We also find that loss of Graf impairs GEEC endocytosis, enhances EGFR signaling and induces a plasmatocyte overproliferation phenotype that requires the EGFR signaling cascade. Mechanistically, Graf-dependent GEEC endocytosis serves as a major route for EGFR internalization at high, but not low, doses of the predominant Drosophila EGFR ligand Spitz (Spi), and is indispensable for efficient EGFR degradation and signal attenuation. Finally, Graf interacts directly with EGFR in a receptor ubiquitylation-dependent manner, suggesting a mechanism by which Graf promotes GEEC endocytosis of EGFR at high Spi. Based on our findings, we propose a model in which Graf functions to downregulate EGFR signaling by facilitating Spi-induced receptor internalization through GEEC endocytosis, thereby restraining plasmatocyte proliferation.
Collapse
Affiliation(s)
- Sungdae Kim
- Interdisciplinary Graduate Program in Genetic Engineering, Seoul National University, Seoul 08826, Korea
| | - Minyeop Nahm
- Department of Cell and Developmental Biology and Dental Research Institute, Seoul National University, Seoul 08826, Korea
| | - Najin Kim
- Interdisciplinary Graduate Program in Genetic Engineering, Seoul National University, Seoul 08826, Korea
| | - Yumi Kwon
- Center for Theragnosis, Korea Institute of Science and Technology, Seoul 02792, Korea
| | - Joohyung Kim
- Department of Brain and Cognitive Sciences, Seoul National University, Seoul 08826, Korea
| | - Sukwoo Choi
- School of Biological Sciences, Seoul National University, Seoul 08826, Korea
| | - Eun Young Choi
- Department of Biomedical Sciences, Seoul National University, Seoul 08826, Korea
| | - Jiwon Shim
- Department of Life Science, Hanyang University, Seoul 04763, Korea
| | - Cheolju Lee
- Center for Theragnosis, Korea Institute of Science and Technology, Seoul 02792, Korea
| | - Seungbok Lee
- Interdisciplinary Graduate Program in Genetic Engineering, Seoul National University, Seoul 08826, Korea .,Department of Cell and Developmental Biology and Dental Research Institute, Seoul National University, Seoul 08826, Korea.,Department of Brain and Cognitive Sciences, Seoul National University, Seoul 08826, Korea
| |
Collapse
|
49
|
Carlock C, Wu J, Shim J, Moreno-Gonzalez I, Pitcher MR, Hicks J, Suzuki A, Iwata J, Quevado J, Lou Y. Interleukin33 deficiency causes tau abnormality and neurodegeneration with Alzheimer-like symptoms in aged mice. Transl Psychiatry 2017; 7:e1191. [PMID: 28763061 PMCID: PMC5611742 DOI: 10.1038/tp.2017.176] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
This corrects the article DOI: 10.1038/tp.2017.142.
Collapse
|
50
|
Yu HT, Shim J, Park J, Kim IS, Kim TH, Uhm JS, Joung B, Lee MH, Kim YH, Pak HN. P887Pulmonary vein isolation vs. additional linear ablation for patients with persistent atrial fibrillation those changed to paroxysmal type with antiarrhythmic therapy: a multi-center randomized study. Europace 2017. [DOI: 10.1093/ehjci/eux151.069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|