Enhanced antibiotic degradation via photo-assisted peroxymonosulfate over graphitic carbon nitride nanosheets/CuBi2O4: Highly efficiency of oxygen activation and interfacial charge transfer

Improving the activation capacity of peroxymonosulfate (PMS) to increase radical and non-radical production is critical for antibiotic degradation. However, how to boost reactive oxygen species (ROS) and speed interfacial charge transfer remains an essential challenge. We report a coupling system of 10 %CNNS/CuBi2O4 photocatalyst and sulfate radical-based advanced oxidation processes (SO4--AOPs) to enhance the activation of PMS and improve antibiotic degradation. Owing to highly efficient oxygen activation and interfacial charge transfer, the degradation efficiency of the photo-assisted PMS system was as high as 51.6 times and 2.8 times that of photocatalyst and SO4--AOPs alone, respectively. Importantly, the highly efficient oxygen activation resulted in the production of O2-, which in turn could utilize the excess electrons generated through efficient interfacial charge transfer to convert into non-radical 1O2. The total organic carbon (TOC) elimination effectiveness of the photo-assisted PMS system reached 82 % via the synergy of radicals and non-radicals (O2-, OH, 1O2, SO4-, h+). This system also had excellent potential for reducing the generation and toxicity of disinfection by-products (DBPs), as evidenced through significant reductions in concentrations of trichloromethane (TCM), dichloroacetic acid (DCAA), and trichloronitromethane (TCNM) by 76 %, 64 %, and 35 %, respectively, providing an effective and eco-friendly strategy for antibiotic treatment.

Frustrated Lewis pairs created by Ce-doped Bi2MoO6: A universal strategy to promote efficient utilization of H2O2 for Fenton-like photodegradation

Photo-Fenton-like technology based on H2O2 is considered as an ideal strategy to generate reactive oxygen species (ROS) for antibiotic degradation, but O2 overflow in the process severely limits the utilization efficiency of H2O2. Herein, we fabricate Bi2MoO6 (BMO) photocatalyst modified with Frustrated Lewis pairs (FLPs) as a Fenton catalyst model for enhancing reuse of spilled O2. The FLPs created by the introduction of cerium and oxygen vacancy were found to contribute to regulate the electronic structure of BMO and further improve the acidic and basic properties of photocatalyst surface. More importantly, the frustrated acid and base sites can enhance the H2O2 and O2 interfacial adsorption process and provide an Ce4+-Ov-O2- active site on the surface of Ce-BMO nanosheets, which can promote O2/•O2-/1O2/H2O2 redox cycles to achieve high H2O2 utilization efficiency. Specifically, in the experiment using tetracycline as a photocatalytic degradation object, the degradation activity of Ce-BMO was 2.15 times higher than that of BMO pure phase. Quenching experiments and EPR assays also confirmed that 1O2 and •O2- were the dominant oxidative species. This study systematically reveals the design of Fenton photocatalytic active sites at the atomic scale and provides new insights into constructing FLPs photocatalysts with high H2O2 utilization efficiency.

Advanced remediation in the presence of ferrous iron and carbonate-containing water by oxygen-induced oxidation of organic contaminants

Mechanistic investigations of an environmentally friendly and easy-to-implement oxidation method in the remediation of contaminated anoxic waters, i.e. groundwater, through the sole use of oxygen for the oxygen-induced oxidation of pollutants were the focus of this work. This was achieved by the addition of O2 under anoxic conditions in the presence of ferrous iron which initiated the ferrous oxidation and the simultaneous formation of reactive •OH radicals. The involvement of inorganic ligands such as carbonates in the activation of oxygen as part of the oxidation of Fe2+ in water was investigated, too. The formation of •OH radicals, was confirmed in two different, indirect approaches by a fluorescence-based method involving coumarin as •OH scavenger and by the determination of the oxidation products of different aromatic VOCs. In the latter case, the oxidation products of several typical aromatic groundwater contaminants such as BTEX (benzene, toluene, ethylbenzene, xylenes), indane and ibuprofen, were determined. The influence of other ligands in the absence of bicarbonate and the effect of pH were also addressed. The possibility of activation of O2 in carbonate-rich water i.e. groundwater, may also potentially contribute to oxidation of groundwater contaminants and support other primary remediation techniques.

Ce-based three-dimensional mesoporous microspheres with Mn homogeneous incorporation for toluene oxidation

Ce-based three-dimensional (3D) mesoporous microspheres with Mn homogeneous incorporation were synthesized. The CeMn-0.4, characterized by a Ce/Mn molar ratio of 6:4, demonstrated exceptional catalytic activity and stability. The formation of CeMn solid solution strengthened the Ce-Mn interaction, yielding higher concentrations of Ce3+ and Mn4+. Mn4+ initiated toluene preliminary activation owing to its robust oxidative properties, while Ce3+ contributed to oxygen vacancy generation, enhancing the activation of gaseous oxygen and lattice oxygen mobility. Integrating experiments and Density Functional Theory (DFT) calculations elucidated the oxygen reaction mechanisms. A portion of oxygen was converted into surface reactive oxygen species (Oads) that directly oxidized toluene. Additionally, the presence of oxygen vacancies promoted the participation of oxygen in toluene oxidation by converting it into lattice oxygen, which was crucial for the deep oxidation of toluene. Diffuse Reflectance Fourier Transform Infrared Spectroscopy (DRIFTS) indicated the accumulation of benzene-ring intermediates on the catalyst surface hindered continuous toluene oxidation. Thus, the abundant oxygen vacancies in CeMn-0.4 played a pivotal role in sustaining the oxidation process by bolstering the activation of gaseous oxygen and the mobility of lattice oxygen.

Flavin-N5OOH Functions as both a Powerful Nucleophile and a Base in the Superfamily of Flavoenzymes

Flavoenzymes can mediate a large variety of oxidation reactions through the activation of oxygen. However, the O2 activation chemistry of flavin enzymes is not yet fully exploited. Normally, the O2 activation occurs at the C4a site of the flavin cofactor, yielding the flavin C4a-(hydro)hydroperoxyl species in monooxygenases or oxidases. Using extensive MD simulations, QM/MM calculations and QM calculations, our studies reveal the formation of the common nucleophilic species, Flavin-N5OOH, in two distinct flavoenzymes (RutA and EncM). Our studies show that Flavin-N5OOH acts as a powerful nucleophile that promotes C-N cleavage of uracil in RutA, and a powerful base in the deprotonation of substrates in EncM. We reason that Flavin-N5OOH can be a common reactive species in the superfamily of flavoenzymes, which accomplish generally selective general base catalysis and C-X (X=N, S, Cl, O) cleavage reactions that are otherwise challenging with solvated hydroxide ion base. These results expand our understanding of the chemistry and catalysis of flavoenzymes.

Bridging Atom Engineering for Low-Temperature Oxygen Activation in a Robust Metal-Organic Framework

Achieving active site engineering at the atomic level poses a significant challenge in the design and optimization of catalysts for energy-efficient catalytic processes, especially for a reaction with two reactants competitively absorbed on catalytic active sites. Herein we show an example that tailoring the local environment of cobalt sites in a robust metal-organic framework through substituting the bridging atom from -Cl to -OH group leads to a highly active catalyst for oxygen activation in an oxidation reaction. Comprehensive characterizations reveal that this variation imparts drastic changes on the electronic structure of metal centers, the competitive reactant adsorption behavior, and the intermediate formation. As a result, exceptional low-temperature CO oxidation performance was achieved with T25(Temperature for 25% conversion) = 35°C and T100 (Temperature for 100% conversion) = 150°C, which stands out from existing MOF-based catalysts and even rivals many noble metal catalysts. This work provides a guidance for the rational design of catalysts for efficient oxygen activation for an oxidation reaction.

Unravelling the nature of the active species as well as the Mn doping effect over gamma-Al2O3 catalyst for eliminating AsH3 and PH3

To investigate the enhancing effect of Mn on the performance of simultaneous catalytic oxidation of AsH3 and PH3 by CuO-Al2O3 in a reducing atmosphere under micro-oxygen conditions, Cu-Mn modified γ-Al2O3 catalysts were prepared. The characteristics of the catalysts showed that Mn reduced the crystallinity of the active CuO component, increased the number of oxygen vacancies and acidic sites on the catalyst surface, enhanced the mobility of surface oxygen, and the interaction between copper and manganese promoted the redox cycling ability of the catalysts and improved their oxidation performance, which increased the conversion frequency (TOF) by 2.54 × 10-2 to 3.07 × 10-2 sec-1. On the other hand, the introduction of Mn reduced the production of phosphate and As2O3 on the catalyst surface by 30.96% and 44.9%, which reduced the coverage and inerting of the active sites by phosphate and As2O3, resulting in an 8 hr (6 hr) improvement in the stability of PH3 (AsH3) removal.

Evidence that the catalytic mechanism of heme a synthase involves the formation of a carbocation stabilized by a conserved glutamate

In eukaryotes and many aerobic prokaryotes, the final step of aerobic respiration is catalyzed by an aa3-type cytochrome c oxidase, which requires a modified heme cofactor, heme a. The conversion of heme b, the prototypical cellular heme, to heme o and ultimately to heme a requires two modifications, the latter of which is conversion of a methyl group to an aldehyde, catalyzed by heme a synthase (HAS). The N- and C-terminal halves of HAS share homology, and each half contains a heme-binding site. Previous reports indicate that the C-terminal site is occupied by a heme b cofactor. The N-terminal site may function as the substrate (heme o) binding site, although this has not been confirmed experimentally. Here, we assess the role of conserved residues from the N- and C-terminal heme-binding sites in HAS from prokaryotic (Shewanella oneidensis) and eukaryotic (Saccharomyces cerevisiae) species - SoHAS/CtaA and ScHAS/Cox15, respectively. A glutamate within the N-terminal site is found to be critical for activity in both types of HAS, consistent with the hypothesis that a carbocation forms transiently during catalysis. In contrast, the residue occupying the analogous C-terminal position is dispensable for enzyme activity. In SoHAS, the C-terminal heme ligands are critical for stability, while in ScHAS, substitutions in either heme-binding site have little effect on global structure. In both species, in vivo accumulation of heme o requires the presence of an inactive HAS variant, highlighting a potential regulatory role for HAS in heme o biosynthesis.

Enhanced H2O2 utilization efficiency in Fenton-like system for degradation of emerging contaminants: Oxygen vacancy-mediated activation of O2

Hydrogen peroxide (H₂O₂) is the most commonly used oxidant in advanced oxidation processes for emerging organic contaminant degradation. However, the activation of H₂O₂ to generate reactive oxygen species is always accompanied by O₂ generation resulting in H₂O₂ waste. Here, we prepare a Ti doped Mn₃O₄/Fe₃O₄ ternary catalyst (Ti-Mn₃O₄/Fe₃O₄) to create abundant oxygen vacancies (OVs), which yields electron delocalization impacts on enhancing the electrical conductivity, accelerating the activation of O₂ to produce H₂O₂. In Ti-Mn₃O₄/Fe₃O₄/H₂O₂ system, OVs-mediated O₂/O₂^•-/H₂O₂ redox cycles trigger the activation of locally generated O₂, boost the regeneration of O₂^•- and on site produce H₂O₂ for replenishment. This leads to a 100% removal of tiamulin in 30 min at an unprecedented H₂O₂ utilization efficiency of 96.0%, which is 24 folds higher than that with Fe₃O₄/H₂O₂. Importantly, further integration of Ti-Mn₃O₄/Fe₃O₄ catalysts into membrane filtration achieved high rejections of tiamulin (> 83.9%) from real surface water during a continuous 12-h operation, demonstrating broad pH adaptability, excellent catalytic stability and leaching resistance. This work demonstrates a feasible strategy for developing OVs-rich catalysts for improving H₂O₂ utilization efficiency via activation of locally generated oxygen during the Haber-Weiss reaction.

Enhanced oxidative ability, recyclability, water tolerance and aromatic resistance of α-MnO2 catalyst for room-temperature formaldehyde oxidation via simple oxalic acid treatment

To obtain a versatile formaldehyde oxidation material, simultaneously increasing the oxidative ability, recyclability and deactivation repellence (e.g., enduring the interference from moisture and aromatic compound omnipresent in indoor air) is of great significance. Herein, the above properties of α-MnO₂ were synchronously updated via one step treatment in oxalic acid (H₂C₂O₄), and an in-depth understanding of the surface properties-performance relationship was provided by systematic characterizations and designed experiments. Compared with the pristine sample, XPS, ESR, O₂-TPD, CO-TPR and pyridine-IR reveal that H₂C₂O₄ created substantial Mn³⁺ species on surface, exposing a higher coverage of oxygen vacancies that actively participated in the dissociative activation of gas-phase O₂ into reactive chemically adsorbed oxygen (O_C), and the abundant Lewis acid sites further enabled the effective O₂ activation process. The large amount of oxygen O_C promoted the HCHO-to-CO₂ conversion and inhibited the accumulation of formate that required a high temperature of 170 °C to be eliminated, thus conspicuously improving the α-MnO₂'s thermal recovery. The combined H₂O-TPD, H₂O-preadsorbed CO-TPR, C₆H₆-TPD and C₆H₆-preadsorbed CO-TPR investigations shed light on the H₂C₂O₄-induced water and benzene resistance. The notably weakened water and benzene binding strength with the H₂C₂O₄-modified surface together with the unrestrained oxygen O_C accounted for the outstanding anti-deactivation performance.

Boosting catalytic stability for VOCs removal by constructing PtCu alloy structure with superior oxygen activation behavior

The elimination of volatile organic compounds (VOCs) emitted from the process of industry production is of great significance to improve the atmospheric environment. Herein the catalytic oxidation of the toluene and iso-hexane mixture, as the typical components from furniture paint industry, and the enhancement in the catalytic stability for toluene oxidation were investigated in detail. The formation rate of active oxygen species was very important for the development of the catalyst with high catalytic stability. Compared with the Pt/M catalyst, the Pt-Cu/M catalyst owned stronger ability of VOCs adsorption and gaseous oxygen activation by introducing additional sites for activating O₂. The Langmuir-Hinshelwood (adsorbed oxygen) and Mars-van Krevelen (lattice oxygen) mechanism existed in toluene oxidation over the present Pt/M and Pt-Cu/M catalysts, respectively. The change in the involved active oxygen species during toluene oxidation was resulted from the Pt-Cu alloy structure. In addition to the adsorption of O₂, a part of active lattice oxygen species can also be replenished by the migration of bulk lattice oxygen over Pt-Cu/M. With a rise in the reaction temperature, weakly adsorbed iso-hexane could be timely reacted with the more active lattice oxygen species to keep the catalytic stability over the Pt/M and Pt-Cu/M catalysts. Generally, we not only prepared a promising material for the catalytic removal of VOCs from the furniture paint industry, but also provided a new strategy for the generation of active oxygen species, making the catalyst exhibit high catalytic oxidation stability.

Boosting the oxidative capacity of the Fe(0)/O2 system via an air-breathing cathode

The corrosion of Fe(0) in the presence of O₂ in nature can lead to the oxidation of organic compounds, but the efficiency is very limited. Herein, attempts were made to establish a galvanic system that separates the anodic Fe(0) oxidation reaction and the cathodic O₂ reduction reaction using an air-breathing cathode. Compared with the chemical Fe(0)/O₂ system, it exhibited a substantially higher capability of destroying a variety of pollutants, such as organic dyes (12 types), phenol, nitrobenzene, acetaminophen, phenol, and ethylenediaminetetraacetic acid. The degradation rate constant of a model dye (i.e., Rhodamine B) increased from 0.047 min^-1 (chemical) to 1.412 min^-1 (galvanic) under the passive air-breathing condition. The electric circuit design promoted Fe(0) dissolution to Fe(II) and triggered electron transfer that drives O₂ reduction to H₂O₂, two important species responsible for the generation of HO^• at high abundance. In addition, the galvanic Fe(0)/O₂ system produces electricity while destroying pollutants. Tests with real Ni plating wastewater further demonstrated the capability of the system to oxidize complexed organics and phosphite. This study provides a new strategy for boosting the oxidative capacity of the Fe(0)/O₂ system, which shows promise for acid wastewater treatment.

Efficient Oxidation of Paracetamol Triggered by Molecular-oxygen Activation at β-cyclodextrin Modified Titanate Nanotube

Titanate nanotube (TNT) was coated with the cyclic oligosaccharides (carboxymethyl-β-cyclodextrin, CM-β-CD) to obtain a photocatalyst (CM-β-CD-TNT) for efficiently activating molecular oxygen and removing the target contaminant. The hydrophobic cavity and the large specific surface area of the photocatalyst provide abundant active sites for activating molecular oxygen. The free radical capture experiment and quenching experiment showed that cyclodextrin could facilitate adsorption and activation of molecular oxygen to produce O2·-. Therefore, compared with the pristine TNT, CM-β-CD-TNT accelerated the oxidation efficiency of paracetamol (APAP) by 3.4 times. Moreover, the ring cleavage reaction induced by CM-β-CD-TNT effectively reduced the acute toxicity of wastewater containing APAP. Furthermore, 100% of bisphenol A (BPA), bisphenol S (BPS), phenol, 2,4-dichlorophen (2,4-DCP), and carbamazepine (CBZ) were degraded by CM-β-CD-TNT after 2.5 h Ultraviolet (UV) light irradiation. This strategy provides a new dimension for the advanced treatment of organic wastewater by organic macrocyclic molecules modified materials.

Oxygen defects-induced charge transfer in Bi7O9I3 for enhancing oxygen activation and visible-light degradation of BPA

Two-dimensional (2D) bismuth-based semiconductors have aroused intensive concern owing to their prominent photocatalytic activity for organic pollutants removal. In this work, a facile strategy for introducing oxygen vacancy in Bi-based oxyiodides (Bi_xO_yI_z) sheet-like architectures to activate molecular oxygen was proposed. The structure, photoelectric properties and visible light (λ > 420 nm) induced photocatalytic activities of these samples for decomposition of bisphenol A (BPA) were systematically characterized and evaluated. The as-prepared Bi₇O₉I₃ with a feeding Bi/I molar ratio of 1:1 exhibited the best photocatalytic activity comparable to those of similarly synthesized Bi₇O₉I₃ with other molar ratios and BiOIO₃ catalysts. The optimal Bi₇O₉I₃ achieved excellent photocatalytic activity with 99.6 % degradation efficiency of BPA within 20 min and superior structural stability with 95.1 % degradation retention over 5 cycling tests. In addition, the resulting Bi₇O₉I₃ sample displayed a high mineralization efficiency of BPA. Importantly, the plenty of oxygen vacancies (V_os) exsiting in Bi₇O₉I₃ played the dominant role in both accelerating electron transfer and activating molecular oxygen to facilitate the generation of superoxide radical (O₂^·-) and singlet oxygen (¹O₂), thereby proceeding oxidative degradation of BPA molecules during photoreactions. The efforts and attempts are also extendable to synthesis other 2D photocatalysts, providing potential for effective charge-carrier separation and molecular oxygen activation.

H2O2 inducing dissolved oxygen activation and electron donation of pollutants over Fe-ZnS quantum dots through surface electron-poor/rich microregion construction for water treatment

In common advanced oxidation processes, excess reagents and energy are often added to the reaction system to maintain the continuity of the reaction. These additions result in a large waste of resources and energy, which has become a bottleneck in the development of water treatment technology. In this study, we propose a new strategy to solve this problem based on a novel dual-reaction-center (DRC) Fe-ZnS quantum dots (Fe-ZnS QDs) catalyst that forms a non-equilibrium surface with an electron-polarized distribution. Through experimental and theoretical studies, it was verified that the activation of trace amounts of H₂O₂ could break the energy barrier for pollutants to transfer electrons. The dissolved oxygen (DO) in the reaction system could be activated by gaining energy on the surface of the Fe-ZnS QDs catalyst, and was converted to ¹O₂ to attack organic pollution. In addition, the pollutants themselves supplied electrons to H₂O₂ through the surface of the Fe-ZnS QDs catalyst to generate more •OH radicals for pollutant degradation, thus providing two fast paths for pollutant degradation. The system could drive the reaction through a trace amount of H₂O₂, thereby activating DO to generate ¹O₂ while effectively using the energy of pollutants. Therefore, the proposed system offers a new direction for the development of environmentally-friendly catalysts and greatly reduces the consumption of resources and energy.

Oxidative degradation of phenol by sulfidated zero valent iron under aerobic conditions: The effect of oxalate and tripolyphosphate ligands

After adding either organic or inorganic ligands, sulfidated nano-zero-valent iron (SnZVI) was used for aerobic degradation of phenol, and the effect of the ligand species on oxidation performance was investigated. We found that SnZVI hardly degraded phenol in the absence of ligand addition. Ligands initiated and promoted the degradation of pollutants by SnZVI. The data herein show that a characteristic inorganic ligand, tripolyphosphate (TPP), is more effective in enhancing oxidation than a characteristic organic ligand oxalate. In addition to the scavenging of reactive oxidants by the organic ligand, more ferrous ion (Fe(II)) dissolution from SnZVI in the TPP system is another cause for the superior enhancement by the inorganic ligand. In the oxalate system, as the sulfur content of SnZVI increased, the oxidation efficiency increased because FeS shell promoted the transfer of electrons to produce more reactive oxygen species (ROS). In TPP system, the effect of sulfur content on oxidation performance is more complex. The SnZVI with low sulfur content showed poor oxidation performance compared with that of nZVI. Further experiments proved that sulfidation might weaken the complexation of TPP with surface bound Fe, which would slow down the ionic Fe(II) dissolution rate. Therefore, sulfidation has the dual effects of enhancing electron transfer and inhibiting the complexation of inorganic ligands. In addition, the mechanisms of ROS generation in different ligand systems were investigated herein. Results showed that the critical ROS in both the oxalate and TPP systems are hydroxyl radicals, and that they are produced via one-electron activation of O₂.

New frontiers in flavin-dependent monooxygenases

Flavin-dependent monooxygenases catalyze a wide variety of redox reactions in important biological processes and are responsible for the synthesis of highly complex natural products. Although much has been learned about FMO chemistry in the last ~80 years of research, several aspects of the reactions catalyzed by these enzymes remain unknown. In this review, we summarize recent advancements in the flavin-dependent monooxygenase field including aspects of flavin dynamics, formation and stabilization of reactive species, and the hydroxylation mechanism. Novel catalysis of flavin-dependent N-oxidases involving consecutive oxidations of amines to generate oximes or nitrones is presented and the biological relevance of the products is discussed. In addition, the activity of some FMOs have been shown to be essential for the virulence of several human pathogens. We also discuss the biomedical relevance of FMOs in antibiotic resistance and the efforts to identify inhibitors against some members of this important and growing family enzymes.

Energy-transfer-mediated oxygen activation in carbonyl functionalized carbon nitride nanosheets for high-efficient photocatalytic water disinfection and organic pollutants degradation

Polymeric photocatalysts are promising candidates for water purification, however their catalytic performance are still unsatisfactory due to the fast charge recombination that leads to low reactive oxygen radicals production. In this study, a conceptual energy-transfer-mediated photocatalytic oxygen activation system over polymeric carbon nitride without the need of electron-hole separation is proposed, exhibiting remarkable singlet oxygen triggered bacteria inactivation performance as well as organic pollutants degradation. By structure and excitonic effect modulation, the oxygen activation process changes from the traditional electron-transfer mechanism to the final energy-transfer pathway, leading to the selective generation of singlet oxygen with high efficiency. The generated singlet oxygen is found to fervently attack the bacteria membrane, creating irreparable pores or holes on the cell membrane for cytoplasmic contents leaking out to accelerate bacteria destruction. The work demonstrated here offers a new photocatalytic oxygen activation pathway for achieving high-efficient reactive oxygen species generation performance without the need of charge separation.

EDTA, oxalate, and phosphate ions enhanced reactive oxygen species generation and sulfamethazine removal by zero-valent iron

The activation rate of oxygen by zero-valent iron (Fe°) was very low. In this study, ethylenediaminetetraacetic acid (EDTA), oxalate (Ox), and phosphate ions (Na₂HPO₄) were used to enhance the oxygen activation by Fe° for sulfamethazine (SMT) removal. The addition of these ligands could significantly enhance the SMT degradation. SMT removal was improved from 10.5 % in the Fe° system (360 min) to 70.3 %, 85.2 % and 77.8 % in the Fe°/EDTA (60 min), Fe°/Ox (180 min) and Fe°/phosphate (360 min) systems, respectively. Scanning electron microscopy with energy dispersive X-ray (SEM-EDX), Fourier transform infrared reflection (FTIR), contact angle and X-ray photoelectron spectra (XPS) of Fe° in different systems were recorded. The presence of chelating agents hydroxylated Fe°, inhibited the iron oxide formation on the Fe° surface and promoted iron ion release from the solid. Moreover, the agents improved the recovery of surface Fe²⁺ which could subsequently enhance the activation of O₂ to produce more H₂O₂ and reactive oxygen radicals for SMT removal. OH radical produced mainly through H₂O₂ decomposition was primarily responsible for removing SMT in all three systems. The Fe° system added with chelating agents is a new and promising approach for treating wastewaters containing ligands.

Degradation of organic contaminants through the activation of oxygen using zero valent copper coupled with sodium tripolyphosphate under neutral conditions

In this study, sodium tripolyphosphate (STPP) was used to promote the removal of organic pollutants in a zero-valent copper (ZVC)/O₂ system under neutral conditions for the first time. 20 mg/L p-nitrophenol (PNP) can be completely decomposed within 120 min in the ZVC/O₂/STPP system. The PNP degradation process followed pseudo-first-order kinetics and the degradation rate of PNP gradually increased upon the decreasing ZVC particle size. The optimal pH of the reaction system was 5.0. Our mechanism investigation showed that Cu⁺ generated by ZVC corrosion was the main reducing agent for the activation of O₂ to produce ROS. ·OH was identified as the only ROS formed during the degradation of PNP and its production pathway was the double-electron activation of O₂ (O₂→H₂O₂→·OH). In this process, STPP did not only promote the release of Cu⁺ through its complexation, but also promoted the production of ·OH by reducing the redox potential of Cu²⁺/Cu⁺. In addition, we could initiate and terminate the reaction by controlling the pH. At pH < 8.1, ZVC/O₂/STPP could continuously degrade organic pollutants; at pH > 8.1, the reaction was terminated. STPP was recycled to continuously promote the corrosion of ZVC and O₂ activation as long as the pH was <8.1. This study provided a new and efficient way for O₂ activation and organic contaminants removal.

Mesoporous cobalt monoxide-supported platinum nanoparticles: Superior catalysts for the oxidative removal of benzene

Mesoporous Co₃O₄ (meso-Co₃O₄)-supported Pt (0.53 wt.% Pt/meso-Co₃O₄) was synthesized via the KIT-6-templating and polyvinyl alcohol (PVA)-assisted reduction routes. Mesoporous CoO (meso-CoO) was fabricated through in situ reduction of meso-Co₃O₄ with glycerol, and the 0.18-0.69 wt.% Pt/meso-CoO samples were generated by the PVA-assisted reduction method. Meso-Co₃O₄ and meso-CoO were of cubic crystal structure and the Pt nanoparticles (NPs) with a uniform size of ca. 2 nm were well distributed on the meso-Co₃O₄ or meso-CoO surface. The 0.56 wt% Pt/meso-CoO (0.56Pt/meso-CoO) sample performed the best in benzene combustion (T_50% = 156 °C and T_90% = 186 °C at a space velocity of 80,000 mL/(g h)). Introducing water vapor or CO₂ with a certain concentration led to partial deactivation of 0.56 Pt/meso-CoO and such a deactivation was reversible. We think that the superior catalytic activity of 0.56 Pt/meso-CoO was intimately related to its good oxygen activation and benzene adsorption ability.

Fate of oxygen species from O2 activation at dimetal cofactors in an oxidase enzyme revealed by 57Fe nuclear resonance X-ray scattering and quantum chemistry

Oxygen (O₂) activation is a central challenge in chemistry and catalyzed at prototypic dimetal cofactors in biological enzymes with diverse functions. Analysis of intermediates is required to elucidate the reaction paths of reductive O₂ cleavage. An oxidase protein from the bacterium Geobacillus kaustophilus, R2lox, was used for aerobic in-vitro reconstitution with only ⁵⁷Fe(II) or Mn(II) plus ⁵⁷Fe(II) ions to yield [FeFe] or [MnFe] cofactors under various oxygen and solvent isotopic conditions including ^16/18O and H/D exchange. ⁵⁷Fe-specific X-ray scattering techniques were employed to collect nuclear forward scattering (NFS) and nuclear resonance vibrational spectroscopy (NRVS) data of the R2lox proteins. NFS revealed Fe/Mn(III)Fe(III) cofactor states and Mössbauer quadrupole splitting energies. Quantum chemical calculations of NRVS spectra assigned molecular structures, vibrational modes, and protonation patterns of the cofactors, featuring a terminal water (H₂O) bound at iron or manganese in site 1 and a metal-bridging hydroxide (μOH^-) ligand. A procedure for quantitation and correlation of experimental and computational NRVS difference signals due to isotope labeling was developed. This approach revealed that the protons of the ligands as well as the terminal water at the R2lox cofactors exchange with the bulk solvent whereas ¹⁸O from ¹⁸O₂ cleavage is incorporated in the hydroxide bridge. In R2lox, the two water molecules from four-electron O₂ reduction are released in a two-step reaction to the solvent. These results establish combined NRVS and QM/MM for tracking of iron-based oxygen activation in biological and chemical catalysts and clarify the reductive O₂ cleavage route in an enzyme.

The Asp99-Arg188 salt bridge of the Pseudomonas aeruginosa HemO is critical in allowing conformational flexibility during catalysis

The P. aeruginosa iron-regulated heme oxygenase (HemO) is required within the host for the utilization of heme as an iron source. As iron is essential for survival and virulence, HemO represents a novel antimicrobial target. We recently characterized small molecule inhibitors that bind to an allosteric site distant from the heme pocket, and further proposed binding at this site disrupts a nearby salt bridge between D99 and R188. Herein, through a combination of site-directed mutagenesis and hydrogen-deuterium exchange mass spectrometry (HDX-MS), we determined that the disruption of the D99-R188 salt bridge leads to significant decrease in conformational flexibility within the distal and proximal helices that form the heme-binding site. The RR spectra of the resting state Fe(III) and reduced Fe(II)-deoxy heme-HemO D99A, R188A and D99/R188A complexes are virtually identical to those of wild-type HemO, indicating no significant change in the heme environment. Furthermore, mutation of D99 or R188 leads to a modest decrease in the stability of the Fe(II)-O₂ heme complex. Despite this slight difference in Fe(II)-O₂ stability, we observe complete loss of enzymatic activity. We conclude the loss of activity is a result of decreased conformational flexibility in helices previously shown to be critical in accommodating variation in the distal ligand and the resulting chemical intermediates generated during catalysis. Furthermore, this newly identified allosteric binding site on HemO represents a novel alternative drug-design strategy to that of competitive inhibition at the active site or via direct coordination of ligands to the heme iron.

Adapting to oxygen: 3-Hydroxyanthrinilate 3,4-dioxygenase employs loop dynamics to accommodate two substrates with disparate polarities

3-Hydroxyanthranilate 3,4-dioxygenase (HAO) is an iron-dependent protein that activates O₂ and inserts both oxygen atoms into 3-hydroxyanthranilate (3-HAA). An intriguing question is how HAO can rapidly bind O₂, even though local O₂ concentrations and diffusion rates are relatively low. Here, a close inspection of the HAO structures revealed that substrate- and inhibitor-bound structures exhibit a closed conformation with three hydrophobic loop regions moving toward the catalytic iron center, whereas the ligand-free structure is open. We hypothesized that these loop movements enhance O₂ binding to the binary complex of HAO and 3-HAA. We found that the carboxyl end of 3-HAA triggers changes in two loop regions and that the third loop movement appears to be driven by an H-bond interaction between Asn²⁷ and Ile¹⁴² Mutational analyses revealed that N27A, I142A, and I142P variants cannot form a closed conformation, and steady-state kinetic assays indicated that these variants have a substantially higher K_m for O₂ than WT HAO. This observation suggested enhanced hydrophobicity at the iron center resulting from the concerted loop movements after the binding of the primary substrate, which is hydrophilic. Given that O₂ is nonpolar, the increased hydrophobicity at the iron center of the binary complex appears to be essential for rapid O₂ binding and activation, explaining the reason for the 3-HAA-induced loop movements. Because substrate binding-induced open-to-closed conformational changes are common, the results reported here may help further our understanding of how oxygen is enriched in nonheme iron-dependent dioxygenases.

Rapid decomposition of diclofenac in a magnetic field enhanced zero-valent iron/EDTA Fenton-like system

In this study, significant synergistic degradation of antibiotic diclofenac (DCF) was demonstrated in a novel magnetic field (MF) enhanced zero-valent iron (ZVI)/EDTA Fenton-like system. Five operational parameters, namely, initial ZVI loading, pH, EDTA dosage, DCF concentration and reaction temperature, were investigated for their effects on the DCF degradation. OH was identified as the predominant reactive oxygen species for DCF degradation in ZVI/EDTA systems whether in the presence or absence of MF. DCF molecule can be oxidized by OH, attacking via the hydroxylation and substituted dechlorination of the chlorinated aromatic ring, as well as by dehydration between the N atom and the acetoxyl. It could also be directly dechlorinated by ZVI reduction simultaneously. The reaction mechanism and promotional role of MF in the MF/ZVI/EDTA system were proposed. It is suggested that MF mainly alters the heterogeneous ZVI surface-bond reactions and accelerates the surface corrosion depending on the presence of pristine iron oxides layer, but MF does not change the homogeneous iron cycle and the Fenton-like reactions.

Characterization of Substrate, Cosubstrate, and Product Isotope Effects Associated With Enzymatic Oxygenations of Organic Compounds Based on Compound-Specific Isotope Analysis

Enzymatic oxygenations are among the most important biodegradation and detoxification reactions of organic pollutants. In the environment, however, such natural attenuation processes are extremely difficult to monitor. Changes of stable isotope ratios of aromatic pollutants at natural isotopic abundances serve as proxies for isotope effects associated with oxygenation reactions. Such isotope fractionations offer new avenues for revealing the pathway and extent of pollutant transformation and provide new insights into the mechanisms of catalysis by Rieske non-heme ferrous iron oxygenases. Based on compound-specific C, H, N, and O isotope analysis, we present a comprehensive methodology with which isotope effects can be derived from the isotope fractionation measured in substrates, the cosubstrate O₂, and organic oxygenation products. We use dioxygenation of nitrobenzene and 2-nitrotoluene by nitrobenzene dioxygenase as illustrative examples to introduce different mathematical procedures for deriving apparent substrate and product isotope effects. We present two experimental approaches to control reactant and product turnover for isotope fractionation analysis in experimental systems containing purified enzymes, E. coli clones, and pure strains of environmental microorganisms. Finally, we present instrumental procedures and sample treatment instructions for analysis of C, H, and N isotope analysis in organic compounds and O isotope analysis in aqueous O₂ by gas and liquid chromatography coupled to isotope ratio mass spectrometry.

Use of Isotopes and Isotope Effects for Investigations of Diiron Oxygenase Mechanisms

Isotope effects of four broad and overlapping categories have been applied to the study of the mechanisms of chemical reaction and regulation of nonheme diiron cluster-containing oxygenases. The categories are: (a) mass properties that allow substrate-to-product conversions to be tracked, (b) atomic properties that allow specialized spectroscopies, (c) mass properties that impact primarily vibrational spectroscopies, and (d) bond dissociation energy shifts that permit dynamic isotope effect studies of many types. The application of these categories of isotope effects is illustrated using the soluble methane monooxygenase system and CmlI, which catalyzes the multistep arylamine to arylnitro conversion in the biosynthetic pathway for chloramphenicol.

Synergistic degradation of antibiotic norfloxacin in a novel heterogeneous sonochemical Fe0/tetraphosphate Fenton-like system

In this study, synergistic degradation of antibiotic norfloxacin (NOR) was obtained in a novel sonochemical ultrasound/zero-valent iron/tetraphosphate system (US/ZVI/TPP). Compared to three common organic ligands (EDTA, EDDS, and DTPA), TPP could perform more excellently in activation of O₂ to produce reactive oxidative species (ROS) and lead to efficient Fenton-like oxidative degradation of NOR in the sonochemical in situ chemical oxidation (ISCO) system. An optimized initial condition was obtained as 10mg/L NOR, 0.3mM TPP, 1g/L ZVI and initial pH 7, and the US/ZVI/TPP system would effectively degrade NOR with relative low dosage of ZVI and ligand as well as broad pH work range 3-9. It was found that three ROS (OH, O₂^- and H₂O₂) instead of OH only would participate in the NOR degradation, while the in situ generation of H₂O₂ during the series of Fe-TPP reactions should be more critical. Fourteen organic intermediates and four inorganic products were detected during the NOR decomposition, suggesting that two main degradation pathways would occur under OH oxidation via cleavage of the piperazine ring and defluorination of the benzene ring, respectively. Finally, an integrated reaction mechanism in the US/ZVI/TPP system was proposed including solid-liquid interfacial iron corrosion as well as bulk homogenous oxygen activation and Fenton reactions, wherein US would play mechanically and chemically promotional roles. Besides, triple-repeated treatments suggested the relative long-term re-usage of ZVI particles and low effluent dissolved iron (<0.6mg/L).

X-ray absorption spectroscopic characterization of the diferric-peroxo intermediate of human deoxyhypusine hydroxylase in the presence of its substrate eIF5a

Human deoxyhypusine hydroxylase (hDOHH) is an enzyme that is involved in the critical post-translational modification of the eukaryotic translation initiation factor 5A (eIF5A). Following the conversion of a lysine residue on eIF5A to deoxyhypusine (Dhp) by deoxyhypusine synthase, hDOHH hydroxylates Dhp to yield the unusual amino acid residue hypusine (Hpu), a modification that is essential for eIF5A to promote peptide synthesis at the ribosome, among other functions. Purification of hDOHH overexpressed in E. coli affords enzyme that is blue in color, a feature that has been associated with the presence of a peroxo-bridged diiron(III) active site. To gain further insight into the nature of the diiron site and how it may change as hDOHH goes through the catalytic cycle, we have conducted X-ray absorption spectroscopic studies of hDOHH on five samples that represent different species along its reaction pathway. Structural analysis of each species has been carried out, starting with the reduced diferrous state, proceeding through its O2 adduct, and ending with a diferric decay product. Our results show that the Fe⋯Fe distances found for the five samples fall within a narrow range of 3.4-3.5 Å, suggesting that hDOHH has a fairly constrained active site. This pattern differs significantly from what has been associated with canonical dioxygen activating nonheme diiron enzymes, such as soluble methane monooxygenase and Class 1A ribonucleotide reductases, for which the Fe⋯Fe distance can change by as much as 1 Å during the redox cycle. These results suggest that the O2 activation mechanism for hDOHH deviates somewhat from that associated with the canonical nonheme diiron enzymes, opening the door to new mechanistic possibilities for this intriguing family of enzymes.

Crystal structure of CmlI, the arylamine oxygenase from the chloramphenicol biosynthetic pathway

The diiron cluster-containing oxygenase CmlI catalyzes the conversion of the aromatic amine precursor of chloramphenicol to the nitroaromatic moiety of the active antibiotic. The X-ray crystal structures of the fully active, N-terminally truncated CmlIΔ33 in the chemically reduced Fe(2+)/Fe(2+) state and a cis μ-1,2(η (1):η (1))-peroxo complex are presented. These structures allow comparison with the homologous arylamine oxygenase AurF as well as other types of diiron cluster-containing oxygenases. The structural model of CmlIΔ33 crystallized at pH 6.8 lacks the oxo-bridge apparent from the enzyme optical spectrum in solution at higher pH. In its place, residue E236 forms a μ-1,3(η (1):η (2)) bridge between the irons in both models. This orientation of E236 stabilizes a helical region near the cluster which closes the active site to substrate binding in contrast to the open site found for AurF. A very similar closed structure was observed for the inactive dimanganese form of AurF. The observation of this same structure in different arylamine oxygenases may indicate that there are two structural states that are involved in regulation of the catalytic cycle. Both the structural studies and single crystal optical spectra indicate that the observed cis μ-1,2(η (1):η (1))-peroxo complex differs from the μ-η (1):η (2)-peroxo proposed from spectroscopic studies of a reactive intermediate formed in solution by addition of O2 to diferrous CmlI. It is proposed that the structural changes required to open the active site also drive conversion of the µ-1,2-peroxo species to the reactive form.

Design of Heteronuclear Metalloenzymes

Heteronuclear metalloenzymes catalyze some of the most fundamentally interesting and practically useful reactions in nature. However, the presence of two or more metal ions in close proximity in these enzymes makes them more difficult to prepare and study than homonuclear metalloenzymes. To meet these challenges, heteronuclear metal centers have been designed into small and stable proteins with rigid scaffolds to understand how these heteronuclear centers are constructed and the mechanism of their function. This chapter describes methods for designing heterobinuclear metal centers in a protein scaffold by giving specific examples of a few heme-nonheme bimetallic centers engineered in myoglobin and cytochrome c peroxidase. We provide step-by-step procedures on how to choose the protein scaffold, design a heterobinuclear metal center in the protein scaffold computationally, incorporate metal ions into the protein, and characterize the resulting metalloproteins, both structurally and functionally. Finally, we discuss how an initial design can be further improved by rationally tuning its secondary coordination sphere, electron/proton transfer rates, and the substrate affinity.

Ascorbic acid enhanced activation of oxygen by ferrous iron: A case of aerobic degradation of rhodamine B

Molecular oxygen activation by ferrous ions (Fe(II)) in aqueous solution could generate reactive oxygen species (ROS) with high oxidation potential via reaction between Fe(II) and oxygen molecules (Fe(II)/air), however, ROS yielded in the Fe(II)/air process is insufficient for removal of organic pollutants due to the irreversible ferric ions (Fe(III)) accumulation. In this study, we demonstrate that ascorbic acid (AA) could enhance ROS generation via oxygen activation by ferrous irons (AA/Fe(II)/air) and thus improve the degradation of rhodamine (RhB) significantly. It was found that the first-order aerobic degradation rate of RhB in the AA/Fe(II)/air process in the presence of ascorbic acid is more than 4 times that of the Fe(II)/Air system without adding ascorbic acid. The presence of ascorbic acid could relieve the accumulation of Fe(III) by reductive accelerating the Fe(III)/Fe(II) cycles, as well as lower the redox potential of Fe(III)/Fe(II) through chelating effect, leading to enhanced ROS generation for promoting RhB degradation. This study not only sheds light on the effect of ascorbic acid on aerobic Fe(II) oxidation, but also provides a green method for effective remediation of organic pollutants.

Polyphosphate-enhanced production of reactive oxidants by nanoparticulate zero-valent iron and ferrous ion in the presence of oxygen: Yield and nature of oxidants

The production of reactive oxidants from nanoparticulate zero-valent iron (nZVI) and ferrous ion (Fe(II)) in the presence of oxygen was greatly enhanced by the addition of tetrapolyphosphate (TPP) as an iron-chelating agent. Compared to other ligands, TPP exhibited superior activity in improving the oxidant yields. The nZVI/TPP/O2 and the Fe(II)/TPP/O2 systems showed similar oxidant yields with respect to the iron consumed, indicating that nZVI only serves as a source of Fe(II). The degradation efficacies of selected organic compounds were also similar in the two systems. It appeared that both hydroxyl radical (OH) and ferryl ion (Fe(IV)) are produced, and OH dominates at acidic pH. However, at pH > 6, little occurrence of hydroxylated oxidation products suggests that Fe(IV) is a dominant oxidant. The degradation rates of selected organic compounds by the Fe(II)/TPP/O2 system had two optimum points at pH 6 and 9, and these pH-dependent trends are likely attributed to the speciation of Fe(IV) with different reactivities.

A suite of de novo c-type cytochromes for functional oxidoreductase engineering

Central to the design of an efficient de novo enzyme is a robust yet mutable protein scaffold. The maquette approach to protein design offers precisely this, employing simple four-α-helix bundle scaffolds devoid of evolutionary complexity and with proven tolerance towards iterative protein engineering. We recently described the design of C2, a de novo designed c-type cytochrome maquette that undergoes post-translational modification in E. coli to covalently graft heme onto the protein backbone in vivo. This de novo cytochrome is capable of reversible oxygen binding, an obligate step in the catalytic cycle of many oxygen-activating oxidoreductases. Here we demonstrate the flexibility of both the maquette platform and the post-translational machinery of E. coli by creating a suite of functional de novo designed c-type cytochromes. We explore the engineering tolerances of the maquette by selecting alternative binding sites for heme C attachment and creating di-heme maquettes either by appending an additional heme C binding motif to the maquette scaffold or by binding heme B through simple bis-histidine ligation to a second binding site. The new designs retain the essential properties of the parent design but with significant improvements in structural stability. Molecular dynamics simulations aid the rationalization of these functional improvements while providing insight into the rules for engineering heme C binding sites in future iterations. This versatile, functional suite of de novo c-type cytochromes shows significant promise in providing robust platforms for the future engineering of de novo oxygen-activating oxidoreductases. This article is part of a Special Issue entitled Biodesign for Bioenergetics--the design and engineering of electron transfer cofactors, proteins and protein networks, edited by Ronald L. Koder and J.L. Ross Anderson.

Enzymatic Halogenases and Haloperoxidases: Computational Studies on Mechanism and Function

Despite the fact that halogenated compounds are rare in biology, a number of organisms have developed processes to utilize halogens and in recent years, a string of enzymes have been identified that selectively insert halogen atoms into, for instance, a CH aliphatic bond. Thus, a number of natural products, including antibiotics, contain halogenated functional groups. This unusual process has great relevance to the chemical industry for stereoselective and regiospecific synthesis of haloalkanes. Currently, however, industry utilizes few applications of biological haloperoxidases and halogenases, but efforts are being worked on to understand their catalytic mechanism, so that their catalytic function can be upscaled. In this review, we summarize experimental and computational studies on the catalytic mechanism of a range of haloperoxidases and halogenases with structurally very different catalytic features and cofactors. This chapter gives an overview of heme-dependent haloperoxidases, nonheme vanadium-dependent haloperoxidases, and flavin adenine dinucleotide-dependent haloperoxidases. In addition, we discuss the S-adenosyl-l-methionine fluoridase and nonheme iron/α-ketoglutarate-dependent halogenases. In particular, computational efforts have been applied extensively for several of these haloperoxidases and halogenases and have given insight into the essential structural features that enable these enzymes to perform the unusual halogen atom transfer to substrates.

Oxidant production from corrosion of nano- and microparticulate zero-valent iron in the presence of oxygen: a comparative study

In aqueous solution, zero-valent iron (ZVI, Fe(0)) is known to activate oxygen (O2) into reactive oxidants such as hydroxyl radical and ferryl ion capable of oxidizing contaminants. However, little is known about the effect of the particle size of ZVI on the yield of reactive oxidants. In this study, the production of reactive oxidants from nanoparticulate and microparticulate ZVIs (denoted as nZVI and mZVI, respectively) was comparatively investigated in the presence of O2 and EDTA. To quantify the oxidant yield, excess amount of methanol was employed, and the formation of its oxidation product, formaldehyde (HCHO), was monitored. The concentration of HCHO in the nZVI/O2 system rapidly reached the saturation value, whereas that in the mZVI/O2 system gradually increased throughout the entire reaction time. The mZVI/O2 system exhibited higher yields of HCHO than the nZVI/O2 system under both acidic and neutral pH conditions. The higher oxidant yields in the mZVI/O2 system are mainly attributed to the less reactivity of the mZVI surface with hydrogen peroxide (H2O2) relative to the surface of nZVI, which minimize the loss of H2O2 by ZVI (i.e., the two-electron reduction of H2O2 into water). In addition, the slow dissolution of Fe(II) from mZVI was found to be partially responsible for the higher oxidant yields at neutral pH.

Heme-dependent dioxygenases in tryptophan oxidation

L-Tryptophan is an essential amino acid for mammals. It is utilized not only for protein synthesis but also for the biosynthesis of serotonin and melatonin by the serotonin pathway as well as nicotinamide adenine dinucleotide by the kynurenine pathway. Although the kynurenine pathway is responsible for the catabolism of over 90% of l-tryptophan in the mammalian intracellular and extracellular pools, the scientific field was dominated in the last century by studies of the serotonin pathway, due to the physiological significance of the latter's catabolic intermediates and products. However, in the past decade, the focus gradually reversed as the link between the kynurenine pathway and various neurodegenerative disorders and immune diseases is increasingly highlighted. Notably, the first step of this pathway, which is catalyzed by heme-dependent dioxygenases, has been proven to be a potential target for immune regulation and cancer treatment. A thorough understanding of the intriguing chemistry of the heme-dependent dioxygenases may yield insight for the drug discovery of these prevalent illnesses. In this review, we survey enzymatic and mechanistic studies, initially started by Kotake and Masayama over 70 years ago, at the molecular level on the heme-dependent tryptophan dioxygenation reactions.