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Sheen S, Huang L, Hwang CA. Numerical simulation of heat transfer during meat ball cooking and microbial food safety enhancement. J Food Sci 2024; 89:1632-1641. [PMID: 38258971 DOI: 10.1111/1750-3841.16949] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Revised: 01/02/2024] [Accepted: 01/07/2024] [Indexed: 01/24/2024]
Abstract
This study was conducted to apply the finite volume method (FVM) to solve the partial differential equation (PDE) governing the heat transfer process during meat cooking with convective surface conditions. For a one-dimensional, round-shaped food, such as meat balls, the domain may be divided into shells of equal thickness, with energy balance established for each adjacent shell using in the finite difference scheme (FDS) to construct a set of finite difference equations, which were then solved simultaneously using the FORTRAN language and the IVPAG subroutine of the International Mathematics and Statistics Library. The FDS is flexible for temperature-dependent physical properties of foods, such as thermal conductivity (k), specific heat (Cp ), thermal diffusivity (α), and boundary conditions, for example, surface heat transfer coefficient (h), to predict the dynamic temperature profiles in beef and chicken meat balls cooked in an oven. Once the FVM model was established and validated, it was used to simulate the dynamic temperature profiles during cooking, which were then used in combination with the general method to evaluate the thermal lethality of Shiga toxin-producing Escherichia coli and Salmonella spp. using D and z values in ground meats during cooking. The method can be applied to design cooking processes that effectively inactivate foodborne pathogens while maintaining the quality of cooked meats and evaluate the adequacy of a cooking process. PRACTICAL APPLICATION: The temperature dependences of thermal conductivity (k) and thermal diffusivity (α) of raw ground beef and ground chicken meats were measured. These thermal properties were then used in numerical simulation to predict the dynamic heating temperature profile and thermal lethality of ground beef and chicken meat balls. The numerical simulation method may be used to optimize and evaluate thermal processes and ensure the inactivation of pathogens in meat products during cooking.
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Affiliation(s)
- Shiowshuh Sheen
- United States Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center, Wyndmoor, Pennsylvania, USA
| | - Lihan Huang
- United States Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center, Wyndmoor, Pennsylvania, USA
| | - Cheng-An Hwang
- United States Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center, Wyndmoor, Pennsylvania, USA
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Shan X, Pan Z, Gao M, Han L, Choi JP, Zhang H. Multi-Physics Modeling of Melting-Solidification Characteristics in Laser Powder Bed Fusion Process of 316L Stainless Steel. Materials (Basel) 2024; 17:946. [PMID: 38399196 PMCID: PMC10890438 DOI: 10.3390/ma17040946] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Revised: 02/11/2024] [Accepted: 02/16/2024] [Indexed: 02/25/2024]
Abstract
In the laser powder bed fusion process, the melting-solidification characteristics of 316L stainless steel have a great effect on the workpiece quality. In this paper, a multi-physics model was constructed using the finite volume method (FVM) to simulate the melting-solidification process of a 316L powder bed via laser powder bed fusion. In this physical model, the phase change process, the influence of temperature gradient on surface tension of molten pool, and the influence of recoil pressure caused by the metal vapor on molten pool surface were considered. Using this model, the effects of laser scanning speed, hatch space, and laser power on temperature distribution, keyhole depth, and workpiece quality were studied. This study can be used to guide the optimization of process parameters, which is beneficial to the improvement of workpiece quality.
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Affiliation(s)
- Xiuyang Shan
- School of Mechanical and Electronic Engineering, Suzhou University, Suzhou 234000, China; (X.S.)
| | - Zhenggao Pan
- School of Information Engineering, Suzhou University, Suzhou 234000, China
| | - Mengdi Gao
- School of Mechanical and Electronic Engineering, Suzhou University, Suzhou 234000, China; (X.S.)
| | - Lu Han
- School of Mechanical and Electronic Engineering, Suzhou University, Suzhou 234000, China; (X.S.)
| | - Joon-Phil Choi
- Department of 3D Printing, Korea Institute of Machinery & Materials, Daejeon 34103, Republic of Korea
| | - Haining Zhang
- School of Information Engineering, Suzhou University, Suzhou 234000, China
- School of Mechanical and Aerospace, Nanyang Technological University, Singapore 639798, Singapore
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Tzirakis K, Kontopodis N, Ioannou CV. A hemodynamic study of blood flow models on various stent graft configurations during aorto-iliac reconstruction. Clin Hemorheol Microcirc 2024:CH232058. [PMID: 38363603 DOI: 10.3233/ch-232058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2024]
Abstract
PURPOSE To compare the hemodynamic performance of three (Bottom Up non-ballet, Top-Down non-ballet, Top Down ballet) idealized stent graft configurations used during endovascular repair of abdominal aortic aneurysms, under the influence of various rheological models. METHODS Ten rheological models are assumed and a commercial finite volume solver is employed for the simulation of blood flow under realistic boundary conditions. An appropriate mesh convergence study is performed and five hemodynamic variables are computed: the time average wall shear stress (TAWSS), oscillatory shear index (OSI), relative residence time (RRT), endothelial cell activation potential and displacement force (DF) for all three configurations. RESULTS The choice of blood flow model may affect results, but does not constitute a significant determinant on the overall performance of the assumed stent grafts. On the contrary, stent graft geometry has a major effect. Specifically, the Bottom Up non-ballet type is characterized by the least favorable performance presenting the lowest TAWSS and the highest OSI, RRT and ECAP values. On the other hand, the Top Down ballet type presents hemodynamic advantages yielding the highest TAWSS and lowest OSI, RRT and ECAP average values. Furthermore, the ballet type is characterized by the lowest DF, although differences observed are small and their clinical relevance uncertain. CONCLUSIONS The effect of the assumed rheological model on the overall performance of the grafts is not significant. It is thus relatively safe to claim that it is the type of stent graft that determines its overall performance rather than the adopted blood flow model.
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Affiliation(s)
- Konstantinos Tzirakis
- Department of Mechanical Engineering, School of Engineering, Hellenic Mediterranean University, Heraklion, Crete, Greece
| | - Nikolaos Kontopodis
- Vascular Surgery Department, Medical School, University of Crete, Heraklion, Crete, Greece
| | - Christos V Ioannou
- Vascular Surgery Department, Medical School, University of Crete, Heraklion, Crete, Greece
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Tzirakis K, Kamarianakis Y, Kontopodis N, Ioannou CV. Selection of Bifurcated Grafts' Dimensions during Aorto-Iliac Vascular Reconstruction Based on Their Hemodynamic Performance. Bioengineering (Basel) 2023; 10:776. [PMID: 37508803 PMCID: PMC10376214 DOI: 10.3390/bioengineering10070776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Revised: 06/21/2023] [Accepted: 06/24/2023] [Indexed: 07/30/2023] Open
Abstract
During the vascular surgical reconstruction of aorto-iliac occlusive/aneurysmal disease, bifurcated grafts are used where vascular surgeons intra-operatively select the size and the relative lengths of the parent and daughter portions of the graft. Currently, clinical practice regarding the selection of the most favorable geometric configuration of the graft is an understudied research subject: decisions are solely based on the clinical experience of the operating surgeon. This manuscript aims to evaluate the hemodynamic performance of various diameters, D, of bifurcated aortic grafts and relate those with proximal/distal part length ratios (the angle φ between the limbs is used as a surrogate marker of the main body-to-limb length ratio) in order to provide insights regarding the effects of different geometries on the hemodynamic environment. To this end, a computationally intensive set of simulations is conducted, and the resulting data are analyzed with modern statistical regression tools. A negative curvilinear relationship of TAWSS with both φ and D is recorded. It is shown that the angle between limbs is a more important predictor for the variability of TAWSS, while the graft's diameter is an important determinant for the variability of OSI. Large percentages of the total graft area with TAWSS < 0.4 Pa, which correspond to thrombogenic stimulating environments, are only observed for large values of φ and D > 20 mm. This variable ranges from 10% (for the smallest values of φ and D) to 55% (for the largest φ and D values). Our findings suggest that grafts with the smallest possible angle between the limbs (i.e., smallest parent-to-daughter length ratio) present the most favorable hemodynamic performance, yielding the smallest percentage of total graft area under thrombogenic simulating environments. Similarly, grafts with the smallest acceptable diameter should be preferred for the same reason. Especially, grafts with diameters greater than 20 mm should be avoided, given the abrupt increase in estimated thrombogenic areas.
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Affiliation(s)
- Konstantinos Tzirakis
- Department of Mechanical Engineering, Hellenic Mediterranean University, 71410 Heraklion, Crete, Greece
| | - Yiannis Kamarianakis
- Data Science Group, Institute of Applied and Computational Mathematics, Foundation for Research and Technology-Hellas, 70013 Heraklion, Crete, Greece
| | - Nikolaos Kontopodis
- Vascular Surgery Department, Medical School, University of Crete, 71003 Heraklion, Crete, Greece
| | - Christos V Ioannou
- Vascular Surgery Department, Medical School, University of Crete, 71003 Heraklion, Crete, Greece
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Tzirakis K, Kamarianakis Y, Kontopodis N, Ioannou CV. The Effect of Blood Rheology and Inlet Boundary Conditions on Realistic Abdominal Aortic Aneurysms under Pulsatile Flow Conditions. Bioengineering (Basel) 2023; 10:bioengineering10020272. [PMID: 36829766 PMCID: PMC9953019 DOI: 10.3390/bioengineering10020272] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Revised: 02/07/2023] [Accepted: 02/17/2023] [Indexed: 02/22/2023] Open
Abstract
BACKGROUND The effects of non-Newtonian rheology and boundary conditions on various pathophysiologies have been studied quite extensively in the literature. The majority of results present qualitative and/or quantitative conclusions that are not thoroughly assessed from a statistical perspective. METHODS The finite volume method was employed for the numerical simulation of seven patient-specific abdominal aortic aneurysms. For each case, five rheological models and three inlet velocity boundary conditions were considered. Outlier- and heteroscedasticity-robust ANOVA tests assessed the simultaneous effect of rheological specifications and boundary conditions on fourteen variables that capture important characteristics of vascular flows. RESULTS The selection of inlet velocity profiles appears as a more critical factor relative to rheological specifications, especially regarding differences in the oscillatory characteristics of computed flows. Response variables that relate to the average tangential force on the wall over the entire cycle do not differ significantly across alternative factor levels, as long as one focuses on non-Newtonian specifications. CONCLUSIONS The two factors, namely blood rheological models and inlet velocity boundary condition, exert additive effects on variables that characterize vascular flows, with negligible interaction effects. Regarding thrombus-prone conditions, the Plug inlet profile offers an advantageous hemodynamic configuration with respect to the other two profiles.
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Affiliation(s)
- Konstantinos Tzirakis
- Department of Mechanical Engineering, Hellenic Mediterranean University, 71410 Heraklion, Crete, Greece
- Correspondence:
| | - Yiannis Kamarianakis
- Data Science Group, Institute of Applied and Computational Mathematics, Foundation for Research & Technology-Hellas, 70013 Heraklion, Crete, Greece
| | - Nikolaos Kontopodis
- Vascular Surgery Department, Medical School, University of Crete, 71003 Heraklion, Crete, Greece
| | - Christos V. Ioannou
- Vascular Surgery Department, Medical School, University of Crete, 71003 Heraklion, Crete, Greece
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Fernandes C. A Fully Implicit Log-Conformation Tensor Coupled Algorithm for the Solution of Incompressible Non-Isothermal Viscoelastic Flows. Polymers (Basel) 2022; 14:4099. [PMID: 36236047 DOI: 10.3390/polym14194099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2022] [Revised: 09/22/2022] [Accepted: 09/26/2022] [Indexed: 11/18/2022] Open
Abstract
In this work, a block-coupled algorithm is presented, which can compute laminar, incompressible, non-isothermal, viscoelastic flow problems based on the log-conformation tensor approach. The inter-equation coupling of the incompressible Cauchy linear momentum and mass conservation equations is obtained in a procedure based on the Rhie–Chow interpolation. The divergence of the log-conformation tensor term in the linear momentum equations is implicitly discretized in this work. In addition, the velocity field is considered implicitly in the log-conformation tensor constitutive equations by expanding the advection, rotation and the rate of deformation terms with a Taylor series expansion truncated at the second-order error term. Finally, the advection and diffusion terms in the energy equation are also implicitly discretized. The mass, linear momentum, log-conformation tensor constitutive model and energy-discretized linear equations are joined into a block-matrix following a monolithic framework. Validation of the newly developed algorithm is performed for the non-isothermal viscoelastic matrix-based Oldroyd-B fluid flow in the axisymmetric 4:1 planar sudden contraction benchmark problem.
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Bali S, Tuković Ž, Cardiff P, Ivanković A, Pakrashi V. A cell-centered finite volume formulation of geometrically exact Simo-Reissner beams with arbitrary initial curvatures. Int J Numer Methods Eng 2022; 123:3950-3973. [PMID: 36247933 PMCID: PMC9543773 DOI: 10.1002/nme.6994] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 04/05/2022] [Accepted: 04/08/2022] [Indexed: 06/16/2023]
Abstract
This article presents a novel total Lagrangian cell-centered finite volume formulation of geometrically exact beams with arbitrary initial curvatures undergoing large displacements and finite rotations. The choice of rotation parameterization, the mathematical formulation of the beam kinematics, conjugate strain measures, and the linearization of the strong form of governing equations are described. The finite volume based discretization of the computational domain and the governing equations for each computational volume are presented. The discretized integral form of the equilibrium equations is solved using a block-coupled Newton-Raphson solution procedure. The efficacy of the proposed methodology is presented by comparing the simulated numerical results with classic benchmark test cases available in the literature. The objectivity of strain measures for the current formulation and mesh convergence studies for both initially straight and curved beam configurations are also discussed.
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Affiliation(s)
- Seevani Bali
- School of Mechanical and Materials EngineeringUniversity College DublinDublin 4Ireland
- SFI MaREI CentreUniversity College DublinDublin 4Ireland
- Bekaert University Technology Centre, School of Mechanical and Materials EngineeringUniversity College DublinDublin 4Ireland
- Dynamical Systems and Risk Laboratory, School of Mechanical and Materials EngineeringUniversity College DublinDublin 4Ireland
- UCD Centre for MechanicsUniversity College DublinDublin 4Ireland
| | - Željko Tuković
- Bekaert University Technology Centre, School of Mechanical and Materials EngineeringUniversity College DublinDublin 4Ireland
- Faculty of Mechanical Engineering and Naval ArchitectureUniversity of ZagrebZagrebCroatia
| | - Philip Cardiff
- School of Mechanical and Materials EngineeringUniversity College DublinDublin 4Ireland
- SFI MaREI CentreUniversity College DublinDublin 4Ireland
- Bekaert University Technology Centre, School of Mechanical and Materials EngineeringUniversity College DublinDublin 4Ireland
- Dynamical Systems and Risk Laboratory, School of Mechanical and Materials EngineeringUniversity College DublinDublin 4Ireland
- UCD Centre for MechanicsUniversity College DublinDublin 4Ireland
- SFI I‐Form CentreUniversity College DublinDublin 4Ireland
- UCD Centre of Adhesion and AdhesivesUniversity College DublinDublin 4Ireland
| | - Alojz Ivanković
- School of Mechanical and Materials EngineeringUniversity College DublinDublin 4Ireland
- Bekaert University Technology Centre, School of Mechanical and Materials EngineeringUniversity College DublinDublin 4Ireland
- UCD Centre for MechanicsUniversity College DublinDublin 4Ireland
- SFI I‐Form CentreUniversity College DublinDublin 4Ireland
- UCD Centre of Adhesion and AdhesivesUniversity College DublinDublin 4Ireland
| | - Vikram Pakrashi
- School of Mechanical and Materials EngineeringUniversity College DublinDublin 4Ireland
- SFI MaREI CentreUniversity College DublinDublin 4Ireland
- Bekaert University Technology Centre, School of Mechanical and Materials EngineeringUniversity College DublinDublin 4Ireland
- Dynamical Systems and Risk Laboratory, School of Mechanical and Materials EngineeringUniversity College DublinDublin 4Ireland
- UCD Centre for MechanicsUniversity College DublinDublin 4Ireland
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Takken M, Wille R. Simulation of Pressure-Driven and Channel-Based Microfluidics on Different Abstract Levels: A Case Study. Sensors (Basel) 2022; 22:5392. [PMID: 35891071 PMCID: PMC9321135 DOI: 10.3390/s22145392] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Revised: 07/09/2022] [Accepted: 07/14/2022] [Indexed: 06/15/2023]
Abstract
A microfluidic device, or a Lab-on-a-Chip (LoC), performs lab operations on the microscale through the manipulation of fluids. The design and fabrication of such devices usually is a tedious process, and auxiliary tools, such as simulators, can alleviate the necessary effort for the design process. Simulations of fluids exist in various forms and can be categorized according to how well they represent the underlying physics, into so-called abstraction levels. In this work, we consider simulation approaches in 1D, which are based on analytical solutions of simplified problems, and approaches in 2D and 3D, for which we use two different Computational Fluid Dynamics (CFD) methods-namely, the Finite Volume Method (FVM) and the Lattice-Boltzmann Method (LBM). All these methods come with their pros and cons with respect to accuracy and required compute time, but unfortunately, most designers and researchers are not aware of the trade-off that can be made within the broad spectrum of available simulation approaches for microfluidics and end up choosing a simulation approach arbitrarily. We provide an overview of different simulation approaches as well as a case study of their performance to aid designers and researchers in their choice. To this end, we consider three representative use cases of pressure-driven and channel-based microfluidic devices (namely the non-Newtonian flow in a channel, the mixing of two fluids in a channel, and the behavior of droplets in channels). The considerations and evaluations raise the awareness and provide several insights for what simulation approaches can be utilized today when designing corresponding devices (and for what they cannot be utilized yet).
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Affiliation(s)
- Michel Takken
- Department of Electrical and Computer Engineering, Technical University of Munich, Arcisstraße 21, 80333 München, Germany
| | - Robert Wille
- Department of Electrical and Computer Engineering, Technical University of Munich, Arcisstraße 21, 80333 München, Germany
- Software Competence Center Hagenberg GmbH (SCCH), Softwarepark 32a, 4232 Hagenberg, Austria
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Kumar S, Rai SK, Kumar BVR, Shankar O. The pulsatile 3D-Hemodynamics in a doubly afflicted human descending abdominal artery with iliac branching. Comput Methods Biomech Biomed Engin 2022; 26:680-699. [PMID: 35727024 DOI: 10.1080/10255842.2022.2082839] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
The study of patient-specific human arterial flow dynamics is well known to face challenges like a) apt geometric modelling, b) bifurcation zone meshing, and c) capturing the hemodynamic prone to variations with multiple disease complications. Due to aneurysms and stenosis in the same arterial network, the blood flow dynamics get affected, which needs to be explored. This study develops a new protocol for accurate geometric modelling, bifurcation zone meshing and numerically investigates the arterial network with abdominal aortic aneurysms (AAA) and right internal iliac stenosis (RIIAS). A realistic arterial model is reconstructed from the computed tomography (CT) data of a human subject. To understand the combined effect of the aneurysm and aortoiliac occlusive diseases in a patient, an arterial network with AAA, RIIAS, multiple branches tapering, and curvature has been considered. Clinically significant pulsatile blood flow simulations have been carried out to trace the alteration in the flow dynamics with multiple pathological complications under consideration. The transient blood flow dynamics are investigated via wall shear stress, wall pressure, velocity contour, streamlines, vorticity, and swirling strength. During the systolic deceleration phase, the rhythmic nested rapid secondary oscillatory WSS, adverse pressure gradients, high WSS, and high WP bands are noticed. Also, the above studies will help researchers, clinicians, and doctors understand the influence of morphological changes on hemodynamics in cardiovascular studies.
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Affiliation(s)
- Sumit Kumar
- School of Biomedical Engineering, Indian Institute of Technology (BHU), Varanasi, Uttar Pradesh, India
| | - S K Rai
- School of Biomedical Engineering, Indian Institute of Technology (BHU), Varanasi, Uttar Pradesh, India
| | - B V Rathish Kumar
- Department of Mathematics and Statistics, Indian Institute of Technology, Kanpur, Uttar Pradesh, India
| | - Om Shankar
- Department of Cardiology, Institute of Medical Science, BHU, Varanasi, Uttar Pradesh, India
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Fernandes C, Fakhari A, Tukovic Ž. Non-Isothermal Free-Surface Viscous Flow of Polymer Melts in Pipe Extrusion Using an Open-Source Interface Tracking Finite Volume Method. Polymers (Basel) 2021; 13:polym13244454. [PMID: 34961005 PMCID: PMC8706656 DOI: 10.3390/polym13244454] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Revised: 12/08/2021] [Accepted: 12/11/2021] [Indexed: 11/28/2022] Open
Abstract
Polymer extrudate swelling is a rheological phenomenon that occurs after polymer melt flow emerges at the die exit of extrusion equipment due to molecular stress relaxations and flow redistributions. Specifically, with the growing demand for large scale and high productivity, polymer pipes have recently been produced by extrusion. This study reports the development of a new incompressible non-isothermal finite volume method, based on the Arbitrary Lagrangian–Eulerian (ALE) formulation, to compute the viscous flow of polymer melts obeying the Herschel–Bulkley constitutive equation. The Papanastasiou-regularized version of the constitutive equation is employed. The influence of the temperature on the rheological behavior of the material is controlled by the Williams–Landel–Ferry (WLF) function. The new method is validated by comparing the extrudate swell ratio obtained for Bingham and Herschel–Bulkley flows (shear-thinning and shear-thickening) with reference data found in the scientific literature. Additionally, the essential flow characteristics including yield-stress, inertia and non-isothermal effects were investigated.
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Affiliation(s)
- Célio Fernandes
- Institute for Polymers and Composites (IPC), Department of Polymer Engineering, Engineering School of the University of Minho, Campus of Azurém, 4800-058 Guimarães, Portugal
- Correspondence:
| | - Ahmad Fakhari
- Transport Phenomena Research Center (CEFT), Mechanical Engineering Department, Faculty of Engineering of the University of Porto, Rua Dr. Roberto Frias s/n, 4200-465 Porto, Portugal;
| | - Željko Tukovic
- Faculty of Mechanical Engineering and Naval Architecture, University of Zagreb, Ulica Ivana Lučića 5, 10000 Zagreb, Croatia;
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Barajas C, Gobbert MK, Kroiz GC, Peercy BE. Challenges and opportunities for the simulation of calcium waves on modern multi-core and many-core parallel computing platforms. Int J Numer Method Biomed Eng 2021; 37:e3244. [PMID: 31356001 DOI: 10.1002/cnm.3244] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2018] [Revised: 05/24/2019] [Accepted: 07/19/2019] [Indexed: 06/10/2023]
Abstract
State-of-the-art distributed-memory computer clusters contain multicore CPUs with 16 and more cores. The second generation of the Intel Xeon Phi many-core processor has more than 60 cores with 16 GB of high-performance on-chip memory. We contrast the performance of the second-generation Intel Xeon Phi, code-named Knights Landing (KNL), with 68 computational cores to the latest multicore CPU Intel Skylake with 18 cores. A special-purpose code solving a system of nonlinear reaction-diffusion partial differential equations with several thousands of point sources modeled mathematically by Dirac delta distributions serves as realistic test bed. The system is discretized in space by the finite volume method and advanced by fully implicit time-stepping, with a matrix-free implementation that allows the complex model to have an extremely small memory footprint. The sample application is a seven variable model of calcium-induced calcium release (CICR) that models the interplay between electrical excitation, calcium signaling, and mechanical contraction in a heart cell. The results demonstrate that excellent parallel scalability is possible on both hardware platforms, but that modern multicore CPUs outperform the specialized many-core Intel Xeon Phi KNL architecture for a large class of problems such as systems of parabolic partial differential equations.
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Affiliation(s)
- Carlos Barajas
- Department of Mathematics and Statistics, University of Maryland, Baltimore Maryland
| | - Matthias K Gobbert
- Department of Mathematics and Statistics, University of Maryland, Baltimore Maryland
| | - Gerson C Kroiz
- Department of Mathematics and Statistics, University of Maryland, Baltimore Maryland
| | - Bradford E Peercy
- Department of Mathematics and Statistics, University of Maryland, Baltimore Maryland
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12
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Fayssal I, Moukalled F. A fast algebraic approach for noninvasive prediction of fractional flow reserve in coronary arteries. Comput Methods Biomech Biomed Engin 2021; 24:1761-1793. [PMID: 34304648 DOI: 10.1080/10255842.2021.1918122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
The fractional flow reserve (FFR) index is an important clinical indicator for characterizing coronary artery disease (CAD) functional significance, allowing cardiologists to decide whether intervention is required or not. Noninvasive techniques for calculating FFR are still incompletely resolved and rely heavily on time consuming numerical methods, which may hinder their clinical translation. This paper reports on the development of two fast and noninvasive methods for predicting FFR in diseased coronary arteries. The new methods are derived from physical principles and account for patient-specific physiological parameters that can be noninvasively measured. The developed algebraic equations calculate FFR without performing any tedious numerical simulations, making them attractive for clinical applications. The performance of the methods is assessed by comparing their predictions with measurements and with results obtained by full three-dimensional numerical simulations on healthy and diseased idealized coronary arteries and actual anatomical branches. Results generated by the new methodology are within 5% of measurements and in very good agreement with values obtained numerically.
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Affiliation(s)
- Iyad Fayssal
- Mechanical and Mechatronics Engineering Department, Rafik Hariri University, P.O.Box: 10 - Damour, Chouf Meshref, Lebanon
| | - Fadl Moukalled
- Mechanical Engineering Department, American University of Beirut, Riad El-Solh, Beirut, Lebanon
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Abstract
Cells and microorganisms adopt various strategies to migrate in response to different environmental stimuli. To date, many modeling research has focused on the crawling-basedDictyostelium discoideum(Dd) cells migration induced by chemotaxis, yet recent experimental results reveal that even without adhesion or contact to a substrate, Dd cells can still swim to follow chemoattractant signals. In this paper, we develop a modeling framework to investigate the chemotaxis induced amoeboid cell swimming dynamics. A minimal swimming system consists of one deformable Dd amoeboid cell and a dilute suspension of bacteria, and the bacteria produce chemoattractant signals that attract the Dd cell. We use themathematical amoeba modelto generate Dd cell deformation and solve the resulting low Reynolds number flows, and use a moving mesh based finite volume method to solve the reaction-diffusion-convection equation. Using the computational model, we show that chemotaxis guides a swimming Dd cell to follow and catch bacteria, while on the other hand, bacterial rheotaxis may help the bacteria to escape from the predator Dd cell.
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Affiliation(s)
- Qixuan Wang
- Department of Mathematics, University of California, Riverside, CA, United States of America.,Interdisciplinary Center for Quantitative Modeling in Biology, University of California, Riverside, CA, United States of America
| | - Hao Wu
- Department of Polymer Science and Engineering, University of Massachusetts, Amherst, MA, United States of America
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Fakhari A, Tukovic Ž, Carneiro OS, Fernandes C. An Effective Interface Tracking Method for Simulating the Extrudate Swell Phenomenon. Polymers (Basel) 2021; 13:polym13081305. [PMID: 33923447 PMCID: PMC8073335 DOI: 10.3390/polym13081305] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Revised: 04/10/2021] [Accepted: 04/11/2021] [Indexed: 12/04/2022] Open
Abstract
The extrudate swell, i.e., the geometrical modifications that take place when the flowing material leaves the confined flow inside a channel and moves freely without the restrictions that are promoted by the walls, is a relevant phenomenon in several polymer processing techniques. For instance, in profile extrusion, the extrudate cross-section is subjected to a number of distortions that are motivated by the swell, which are very difficult to anticipate, especially for complex geometries. As happens in many industrial processes, numerical modelling might provide useful information to support design tasks, i.e., to allow for identifying the best strategy to compensate the changes promoted by the extrudate swell. This study reports the development of an improved interface tracking algorithm that employs the least-squares volume-to-point interpolation method for the grid movement. The formulation is enriched further with the consistent second-order time-accurate non-iterative Pressure-Implicit with Splitting of Operators (PISO) algorithm, which allows for efficiently simulating free-surface flows. The accuracy and robustness of the proposed solver is illustrated through the simulation of the steady planar and asymmetric extrudate swell flows of Newtonian fluids. The role of inertia on the extrudate swell is studied, and the results that are obtained with the newly improved solver show good agreement with reference data that are found in the scientific literature.
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Affiliation(s)
- Ahmad Fakhari
- Institute for Polymers and Composites, Department of Polymer Engineering, Campus of Azurém, University of Minho, 4800-058 Guimarães, Portugal; (A.F.); (O.S.C.); (C.F.)
| | - Željko Tukovic
- Faculty of Mechanical Engineering and Naval Architecture, University of Zagreb, Ivana Lučića 5, 10000 Zagreb, Croatia
- Correspondence:
| | - Olga Sousa Carneiro
- Institute for Polymers and Composites, Department of Polymer Engineering, Campus of Azurém, University of Minho, 4800-058 Guimarães, Portugal; (A.F.); (O.S.C.); (C.F.)
| | - Célio Fernandes
- Institute for Polymers and Composites, Department of Polymer Engineering, Campus of Azurém, University of Minho, 4800-058 Guimarães, Portugal; (A.F.); (O.S.C.); (C.F.)
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15
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Abstract
Laminar natural convection with a pair of hot and cold tube in a closed cubic cavity is carried out. This configuration can be founded in performance of nuclear power plant containment passive residual heat removal system. The basic government aquations are sloved by means of finite volume method. The effect of Ra number (103-106), shape of tube and spatial position on local and mean heat transfer characteristics is studied. It is found that the Nu number increased when raising Ra number. The Nu number is higher when the shapes are circle and triangle. In adddition, it is founded that the heat transfer has a better effect when the cold tube locates above the hot tube among the five spatial positions. The results provides theoretical basis for performance of nuclear power plant containment passive residual heat removal system.
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Affiliation(s)
- Jiyu Zheng
- School of Mechatronic Engineering, Southwest Petroleum University, Chengdu, Sichuan, P.R. China
| | - Liang Zhang
- School of Mechatronic Engineering, Southwest Petroleum University, Chengdu, Sichuan, P.R. China
| | - Hai Yu
- School of Mechatronic Engineering, Southwest Petroleum University, Chengdu, Sichuan, P.R. China
| | - Yilong Wang
- School of Mechatronic Engineering, Southwest Petroleum University, Chengdu, Sichuan, P.R. China
| | - Tong Zhao
- School of Mechatronic Engineering, Southwest Petroleum University, Chengdu, Sichuan, P.R. China
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16
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Šarler B, Zahoor R, Bajt S. Alternative Geometric Arrangements of the Nozzle Outlet Orifice for Liquid Micro-Jet Focusing in Gas Dynamic Virtual Nozzles. Materials (Basel) 2021; 14:1572. [PMID: 33807027 DOI: 10.3390/ma14061572] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Revised: 03/19/2021] [Accepted: 03/22/2021] [Indexed: 01/10/2023]
Abstract
Liquid micro-jets are crucial for sample delivery of protein crystals and other macromolecular samples in serial femtosecond crystallography. When combined with MHz repetition rate sources, such as the European X-ray free-electron laser (EuXFEL) facility, it is important that the diffraction patterns are collected before the samples are damaged. This requires extremely thin and very fast jets. In this paper we first explore numerically the influence of different nozzle orifice designs on jet parameters and finally compare our simulations with the experimental data obtained for one particular design. A gas dynamic virtual nozzle (GDVN) model, based on a mixture formulation of Newtonian, compressible, two-phase flow, is numerically solved with the finite volume method and volume of fluid approach to deal with the moving boundary between the gas and liquid phases. The goal is to maximize the jet velocity and its length while minimizing the jet thickness. The design studies incorporate differently shaped nozzle orifices, including an elongated orifice with a constant diameter and an orifice with a diverging angle. These are extensions of the nozzle geometry we investigated in our previous studies. Based on these simulations it is concluded that the extension of the constant diameter channel makes a negligible contribution to the jet’s length and its velocity. A change in the angle of the nozzle outlet orifice, however, has a significant effect on jet parameters. We find these kinds of simulation extremely useful for testing and optimizing novel nozzle designs.
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17
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Salama A, Sun S, Zhang T. A Unified, One Fluid Model for the Drag of Fluid and Solid Dispersals by Permeate Flux towards a Membrane Surface. Membranes (Basel) 2021; 11:membranes11020154. [PMID: 33671756 PMCID: PMC7926833 DOI: 10.3390/membranes11020154] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/12/2021] [Revised: 02/09/2021] [Accepted: 02/18/2021] [Indexed: 11/17/2022]
Abstract
The drag of dispersals towards a membrane surface is a consequence of the filtration process. It also represents the first step towards the development of the problem of fouling. In order to combat membrane fouling, it is important to understand such drag mechanisms and provide a modeling framework. In this work, a new modeling and numerical approach is introduced that is based on a one-domain model in which both the dispersals and the surrounding fluid are dealt with as a fluid with heterogeneous property fields. Furthermore, because of the fact that the geometry of the object assumes axial symmetry and the configuration remains fixed, the location of the interface may be calculated using geometrical relationships. This alleviates the need to define an indicator function and solve a hyperbolic equation to update the configuration. Furthermore, this approach simplifies the calculations and significantly reduces the computational burden required otherwise if one incorporates a hyperbolic equation to track the interface. To simplify the calculations, we consider the motion of an extended cylindrical object. This allows a reduction in the dimensions of the problem to two, thereby reducing the computational burden without a loss of generality. Furthermore, for this particular case there exists an approximate analytical solution that accounts for the effects of the confining boundaries that usually exist in real systems. We use such a setup to provide the benchmarking of the different averaging techniques for the calculations of properties at the cell faces and center, particularly in the cells involving the interface.
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Affiliation(s)
- Amgad Salama
- Process System Engineering, University of Regina, Regina, SK S4S 0A2, Canada
- Correspondence:
| | - Shuyu Sun
- Physical Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal 23955, Saudi Arabia; (S.S.); (T.Z.)
| | - Tao Zhang
- Physical Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal 23955, Saudi Arabia; (S.S.); (T.Z.)
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18
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Selimefendigil F, Öztop HF. Thermal Management and Modeling of Forced Convection and Entropy Generation in a Vented Cavity by Simultaneous Use of a Curved Porous Layer and Magnetic Field. Entropy (Basel) 2021; 23:152. [PMID: 33530578 PMCID: PMC7911686 DOI: 10.3390/e23020152] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/01/2021] [Revised: 01/21/2021] [Accepted: 01/22/2021] [Indexed: 11/16/2022]
Abstract
The effects of using a partly curved porous layer on the thermal management and entropy generation features are studied in a ventilated cavity filled with hybrid nanofluid under the effects of inclined magnetic field by using finite volume method. This study is performed for the range of pertinent parameters of Reynolds number (100≤Re≤1000), magnetic field strength (0≤Ha≤80), permeability of porous region (10-4≤Da≤5×10-2), porous layer height (0.15H≤tp≤0.45H), porous layer position (0.25H≤yp≤0.45H), and curvature size (0≤b≤0.3H). The magnetic field reduces the vortex size, while the average Nusselt number of hot walls increases for Ha number above 20 and highest enhancement is 47% for left vertical wall. The variation in the average Nu with permeability of the layer is about 12.5% and 21% for left and right vertical walls, respectively, while these amounts are 12.5% and 32.5% when the location of the porous layer changes. The entropy generation increases with Hartmann number above 20, while there is 22% increase in the entropy generation for the case at the highest magnetic field. The porous layer height reduced the entropy generation for domain above it and it give the highest contribution to the overall entropy generation. When location of the curved porous layer is varied, the highest variation of entropy generation is attained for the domain below it while the lowest value is obtained at yp=0.3H. When the size of elliptic curvature is varied, the overall entropy generation decreases from b=0 to b=0.2H by about 10% and then increases by 5% from b=0.2H to b=0.3H.
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Affiliation(s)
- Fatih Selimefendigil
- Department of Mechanical Engineering, Celal Bayar University, Manisa 45140, Turkey;
| | - Hakan F. Öztop
- Department of Mechanical Engineering, Technology Faculty, Fırat University, Elazığ 23119, Turkey
- Department of Medical Research, China Medical University Hospital, China Medical University, Taichung 40402, Taiwan
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19
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Selmer I, Farrell P, Smirnova I, Gurikov P. Comparison of Finite Difference and Finite Volume Simulations for a Sc-Drying Mass Transport Model. Gels 2020; 6:E45. [PMID: 33255687 DOI: 10.3390/gels6040045] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Revised: 11/17/2020] [Accepted: 11/22/2020] [Indexed: 11/17/2022] Open
Abstract
Different numerical solutions of a previously developed mass transport model for supercritical drying of aerogel particles in a packed bed [Part 1: Selmer et al. 2018, Part 2: Selmer et al. 2019] are compared. Two finite difference discretizations and a finite volume method were used. The finite volume method showed a higher overall accuracy, in the form of lower overall Euclidean norm (l2) and maximum norm (l∞) errors, as well as lower mole balance errors compared to the finite difference methods. Additionally, the finite volume method was more efficient when the condition numbers of the linear systems to be solved were considered. In case of fine grids, the computation time of the finite difference methods was slightly faster but for 16 or fewer nodes the finite volume method was superior. Overall, the finite volume method is preferable for the numerical solution of the described drying model for aerogel particles in a packed bed.
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20
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Zocher MA, Aslam TD. Numerical Considerations in the Modeling of a High Explosive Cylinder Experiment Using an ALE Continuum Mechanics Code. Materials (Basel) 2020; 13:ma13194448. [PMID: 33036447 PMCID: PMC7579623 DOI: 10.3390/ma13194448] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Revised: 09/15/2020] [Accepted: 09/25/2020] [Indexed: 06/11/2023]
Abstract
A series of experiments involving the detonation of PBX 9501 encased in a copper cylinder are modeled with the objective of evaluating a proposed set of phenomenological parameters for the Wescott-Stewart-Davis reactive burn model. The numerical analysis is conducted using the Los Alamos continuum mechanics code FLAG. Numerical considerations pertaining to various aspects of modeling the experiments using FLAG are discussed. It is shown that use of the proposed set of phenomenological parameters results in predictions of free-surface velocity that match empirically measured velocities reasonably well.
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21
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Abstract
The purpose of this study was to compare side-to-side and functional end-to-end anastomosis techniques that are commonly used in bowel surgery. Considering the dimensions of these two different anastomosis models, SolidWorks program was used for 3 D studies. Intra-intestinal flow analyzes were performed based on the finite volume method using Ansys Fluent, a computational fluid Dynamics (CFD) program. The flow velocity, pressure, turbulent knetic energy, turbulence vortex distribution, vortex viscosity and wall shear stresses for each model were calculated in results of the analysis for the side-to-side and functional end-to-end anastomosis technique. Due to the geometrical structure of the functional end - to - end anastomosis model, turbulence and hence the vortex formation is less than the side - to - side anastomosis technique. Because intersect area of bowels has wider in functional end - to - end anastomosis model, flow become easier than other. In surgical practice, functional end-to-end anastomosis is preferred over side-to-side anastomosis because of the low probability of leakage. It can be noted that the functional end - to - end anastomosis technique will be safer because of less turbulence, based on the data of fluid flow velocities, pressure, turbulent knetic energy, turbulence vortex distribution, vortex viscosity and wall shear stresses in the anastomosis.
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Affiliation(s)
- Yavuz Pirhan
- Department of General Surgery, Sabuncuoğlu Şerefeddin Research and Training Hospital, Amasya University, Amasya, Turkey
| | - Kadir Gök
- Department of Biomedical Engineering, Engineering and Architecture Faculty, Izmir Bakircay University, Izmir, Turkey
| | - Arif Gök
- Department of Mechanical Engineering, Technology Faculty, Amasya University, Amasya, Turkey
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22
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Schäfer K, Nestler D, Tröltzsch J, Ireka I, Niedziela D, Steiner K, Kroll L. Numerical Studies of the Viscosity of Reacting Polyurethane Foam with Experimental Validation. Polymers (Basel) 2020; 12:E105. [PMID: 31947995 DOI: 10.3390/polym12010105] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Revised: 12/19/2019] [Accepted: 01/01/2020] [Indexed: 11/17/2022] Open
Abstract
Products made of polyurethane foam are manufactured by the chemical reaction of various low-viscosity raw materials and additives. The diversity of different formulations to meet the requirements of the market makes the characterization of their processing and flow properties important for a simple and error-free production. The modeling and simulation of such processes are equally of great importance. This provides additional findings without the expense of real tests and makes it easier to design components. The work described in this paper was carried out against this background. An experimental setup using a rheometer was developed to determine the flow and curing properties of reacting polyurethane foam reproducibly with comparable expansion conditions to industrial processes. The experiment was mathematically modelled to investigate the rheology of reacting polyurethane foams. The mathematical framework consists of coupled, non-linear, partial differential equations for the dynamics and the heat transfer processes in the system. These are solved numerically in 3D using finite volume techniques under adequate physical conditions. The accuracy of two viscosity laws according to the state of the art and their novel combination were investigated in this context. The proposed viscosity model of this study provides accurate results compared to the experiment.
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23
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Feng CP, Chen LB, Tian GL, Wan SS, Bai L, Bao RY, Liu ZY, Yang MB, Yang W. Multifunctional Thermal Management Materials with Excellent Heat Dissipation and Generation Capability for Future Electronics. ACS Appl Mater Interfaces 2019; 11:18739-18745. [PMID: 31026137 DOI: 10.1021/acsami.9b03885] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Thermal management materials (TMMs) used in electronic devices are crucial for future electronics and technologies such as flexible electronics and artificial intelligence (AI) technologies. As future electronics will work in a more complicated circumstance, the overheating and overcooling problems can exist in the same electronics while the common TMMs cannot meet the demand of thermal management for future electronics. In this work, nacre-mimetic graphene-based films with super flexibility and durability (in over 10,000 tensile cycles), excellent capability to dissipate excess heat (20.84 W/(m·K) at only 16-22 μm thickness), and outstanding heating performance to generate urgent heat for electronics under extremely cold conditions are fabricated by a facile solution casting method, and the fabricated composites are proved to be superior multifunctional TMMs for the thermal management in electronic chips. In addition, the application of the paper-like films with high in-plane thermal conductivity to a flexible heat spreader and film heater is demonstrated by simulation using a finite volume method, which shows the high importance of the in-plane thermal conductivity in thermal management of electronics.
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Affiliation(s)
- Chang-Ping Feng
- College of Polymer Science and Engineering and State Key Laboratory of Polymer Materials Engineering , Sichuan University , Chengdu 610065 , Sichuan , People's Republic of China
| | - Li-Bo Chen
- College of Polymer Science and Engineering and State Key Laboratory of Polymer Materials Engineering , Sichuan University , Chengdu 610065 , Sichuan , People's Republic of China
| | - Guo-Liang Tian
- College of Polymer Science and Engineering and State Key Laboratory of Polymer Materials Engineering , Sichuan University , Chengdu 610065 , Sichuan , People's Republic of China
| | - Shen-Shen Wan
- College of Polymer Science and Engineering and State Key Laboratory of Polymer Materials Engineering , Sichuan University , Chengdu 610065 , Sichuan , People's Republic of China
| | - Lu Bai
- College of Polymer Science and Engineering and State Key Laboratory of Polymer Materials Engineering , Sichuan University , Chengdu 610065 , Sichuan , People's Republic of China
| | - Rui-Ying Bao
- College of Polymer Science and Engineering and State Key Laboratory of Polymer Materials Engineering , Sichuan University , Chengdu 610065 , Sichuan , People's Republic of China
| | - Zheng-Ying Liu
- College of Polymer Science and Engineering and State Key Laboratory of Polymer Materials Engineering , Sichuan University , Chengdu 610065 , Sichuan , People's Republic of China
| | - Ming-Bo Yang
- College of Polymer Science and Engineering and State Key Laboratory of Polymer Materials Engineering , Sichuan University , Chengdu 610065 , Sichuan , People's Republic of China
| | - Wei Yang
- College of Polymer Science and Engineering and State Key Laboratory of Polymer Materials Engineering , Sichuan University , Chengdu 610065 , Sichuan , People's Republic of China
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24
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Botti L, Paliwal N, Conti P, Antiga L, Meng H. Modeling hemodynamics in intracranial aneurysms: Comparing accuracy of CFD solvers based on finite element and finite volume schemes. Int J Numer Method Biomed Eng 2018; 34:e3111. [PMID: 29858530 PMCID: PMC6378953 DOI: 10.1002/cnm.3111] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2017] [Revised: 05/25/2018] [Accepted: 05/27/2018] [Indexed: 06/08/2023]
Abstract
Image-based computational fluid dynamics (CFD) has shown potential to aid in the clinical management of intracranial aneurysms, but its adoption in the clinical practice has been missing, partially because of lack of accuracy assessment and sensitivity analysis. To numerically solve the flow-governing equations, CFD solvers generally rely on 2 spatial discretization schemes: finite volume (FV) and finite element (FE). Since increasingly accurate numerical solutions are obtained by different means, accuracies and computational costs of FV and FE formulations cannot be compared directly. To this end, in this study, we benchmark 2 representative CFD solvers in simulating flow in a patient-specific intracranial aneurysm model: (1) ANSYS Fluent, a commercial FV-based solver, and (2) VMTKLab multidGetto, a discontinuous Galerkin (dG) FE-based solver. The FV solver's accuracy is improved by increasing the spatial mesh resolution (134k, 1.1m, 8.6m, and 68.5m tetrahedral element meshes). The dGFE solver accuracy is increased by increasing the degree of polynomials (first, second, third, and fourth degree) on the base 134k tetrahedral element mesh. Solutions from best FV and dGFE approximations are used as baseline for error quantification. On average, velocity errors for second-best approximations are approximately 1 cm/s for a [0,125] cm/s velocity magnitude field. Results show that high-order dGFE provides better accuracy per degree of freedom but worse accuracy per Jacobian nonzero entry as compared with FV. Cross-comparison of velocity errors demonstrates asymptotic convergence of both solvers to the same numerical solution. Nevertheless, the discrepancy between underresolved velocity fields suggests that mesh independence is reached following different paths.
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Affiliation(s)
- Lorenzo Botti
- Department of Engineering and Applied Sciences, University of Bergamo, Bergamo, Italy
| | - Nikhil Paliwal
- Toshiba Stroke and Vascular Research Center, University of Buffalo, Buffalo, NY, USA
- Department of Neurosurgery, University at Buffalo, Buffalo, NY, USA
| | - Pierangelo Conti
- Department of Engineering and Applied Sciences, University of Bergamo, Bergamo, Italy
| | | | - Hui Meng
- Toshiba Stroke and Vascular Research Center, University of Buffalo, Buffalo, NY, USA
- Department of Neurosurgery, University at Buffalo, Buffalo, NY, USA
- Department of Mechanical and Aerospace Engineering, University of Buffalo, Buffalo, NY, USA
- Department of Biomedical Engineering, University at Buffalo, Buffalo, NY, USA
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25
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Okuducu MB, Aral MM. Performance Analysis and Numerical Evaluation of Mixing in 3-D T-Shape Passive Micromixers. Micromachines (Basel) 2018; 9:E210. [PMID: 30424143 PMCID: PMC6187341 DOI: 10.3390/mi9050210] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/02/2018] [Revised: 04/12/2018] [Accepted: 04/25/2018] [Indexed: 11/26/2022]
Abstract
In micromixer devices, laminar characteristics of the flow domain and small diffusion constants of the fluid samples that are mixed characterize the mixing process. The advection dominant flow and transport processes that develop in these devices not only create significant challenges for numerical solution of the problem, but they are also the source of numerical errors which may lead to confusing performance evaluations that are reported in the literature. In this study, the finite volume method (FVM) and finite element method (FEM) are used to characterize these errors and critical issues in numerical performance evaluations are highlighted. In this study, we used numerical methods to evaluate the mixing characteristics of a typical T-shape passive micromixer for several flow and transport parameters using both FEM and FVM, although the numerical procedures described are also equally applicable to other geometric designs as well. The outcome of the study shows that the type of stabilization technique used in FEM is very important and should be documented and reported. Otherwise, erroneous mixing performance may be reported since the added artificial diffusion may significantly affect the mixing performance in the device. Similarly, when FVM methods are used, numerical diffusion errors may become important for certain unstructured discretization techniques that are used in the idealization of the solution domain. This point needs to be also analyzed and reported when FVM is used in performance evaluation of micromixer devices. The focus of this study is not on improving the mixing performance of micromixers. Instead, we highlight the bench scale characteristics of the solutions and the mixing evaluation procedures used when FVM and FEM are employed.
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Affiliation(s)
- Mahmut Burak Okuducu
- School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA.
| | - Mustafa M Aral
- Department of Civil Engineering, Bartin University, Bartin 74100, Turkey.
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26
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Yi Y, Zheng X, Fu Z, Wang C, Xu X, Tan X. Multi-Scale Modeling for Predicting the Stiffness and Strength of Hollow-Structured Metal Foams with Structural Hierarchy. Materials (Basel) 2018; 11:E380. [PMID: 29510553 DOI: 10.3390/ma11030380] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/24/2018] [Revised: 02/15/2018] [Accepted: 03/02/2018] [Indexed: 11/28/2022]
Abstract
This work was inspired by previous experiments which managed to establish an optimal template-dealloying route to prepare ultralow density metal foams. In this study, we propose a new analytical–numerical model of hollow-structured metal foams with structural hierarchy to predict its stiffness and strength. The two-level model comprises a main backbone and a secondary nanoporous structure. The main backbone is composed of hollow sphere-packing architecture, while the secondary one is constructed of a bicontinuous nanoporous network proposed to describe the nanoscale interactions in the shell. Firstly, two nanoporous models with different geometries are generated by Voronoi tessellation, then the scaling laws of the mechanical properties are determined as a function of relative density by finite volume simulation. Furthermore, the scaling laws are applied to identify the uniaxial compression behavior of metal foams. It is shown that the thickness and relative density highly influence the Young’s modulus and yield strength, and vacancy defect determines the foams being self-supported. The present study provides not only new insights into the mechanical behaviors of both nanoporous metals and metal foams, but also a practical guide for their fabrication and application.
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27
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Caiazzo A, Caforio F, Montecinos G, Muller LO, Blanco PJ, Toro EF. Assessment of reduced-order unscented Kalman filter for parameter identification in 1-dimensional blood flow models using experimental data. Int J Numer Method Biomed Eng 2017; 33:e2843. [PMID: 27781397 DOI: 10.1002/cnm.2843] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2016] [Revised: 10/17/2016] [Accepted: 10/18/2016] [Indexed: 06/06/2023]
Abstract
This work presents a detailed investigation of a parameter estimation approach on the basis of the reduced-order unscented Kalman filter (ROUKF) in the context of 1-dimensional blood flow models. In particular, the main aims of this study are (1) to investigate the effects of using real measurements versus synthetic data for the estimation procedure (i.e., numerical results of the same in silico model, perturbed with noise) and (2) to identify potential difficulties and limitations of the approach in clinically realistic applications to assess the applicability of the filter to such setups. For these purposes, the present numerical study is based on a recently published in vitro model of the arterial network, for which experimental flow and pressure measurements are available at few selected locations. To mimic clinically relevant situations, we focus on the estimation of terminal resistances and arterial wall parameters related to vessel mechanics (Young's modulus and wall thickness) using few experimental observations (at most a single pressure or flow measurement per vessel). In all cases, we first perform a theoretical identifiability analysis on the basis of the generalized sensitivity function, comparing then the results owith the ROUKF, using either synthetic or experimental data, to results obtained using reference parameters and to available measurements.
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Affiliation(s)
- A Caiazzo
- Weierstrass Institute for Applied Analysis and Stochastics (WIAS), Leibniz Institut im Forschungsverbund, Berlin e.V
| | - Federica Caforio
- Laboratory of Applied Mathematics, DICAM, University of Trento, Italy
| | - Gino Montecinos
- Center for Mathematical Modeling, Universidad de Chile, Santiago, Chile
| | - Lucas O Muller
- Laboratório Nacional de Computação Científica, Petrópolis, Brazil
- Instituto Nacional de Ciência e Tecnologia em Medicina Assistida por Computação Científica, Petrópolis, Brazil
| | - Pablo J Blanco
- Laboratório Nacional de Computação Científica, Petrópolis, Brazil
- Instituto Nacional de Ciência e Tecnologia em Medicina Assistida por Computação Científica, Petrópolis, Brazil
| | - Eluterio F Toro
- Laboratory of Applied Mathematics, DICAM, University of Trento, Italy
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Abstract
Bones of the murine cranial vault are formed by differentiation of mesenchymal cells into osteoblasts, a process that is primarily understood to be controlled by a cascade of reactions between extracellular molecules and cells. We assume that the process can be modeled using Turing's reaction-diffusion equations, a mathematical model describing the pattern formation controlled by two interacting molecules (activator and inhibitor). In addition to the processes modeled by reaction-diffusion equations, we hypothesize that mechanical stimuli of the cells due to growth of the underlying brain contribute significantly to the process of cell differentiation in cranial vault development. Structural analysis of the surface of the brain was conducted to explore the effects of the mechanical strain on bone formation. We propose a mechanobiological model for the formation of cranial vault bones by coupling the reaction-diffusion model with structural mechanics. The mathematical formulation was solved using the finite volume method. The computational domain and model parameters are determined using a large collection of experimental data that provide precise three dimensional (3D) measures of murine cranial geometry and cranial vault bone formation for specific embryonic time points. The results of this study suggest that mechanical strain contributes information to specific aspects of bone formation. Our mechanobiological model predicts some key features of cranial vault bone formation that were verified by experimental observations including the relative location of ossification centers of individual vault bones, the pattern of cranial vault bone growth over time, and the position of cranial vault sutures.
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Affiliation(s)
- Chanyoung Lee
- The Penn State Computational Biomechanics Group, Department of Mechanical and Nuclear Engineering, The Pennsylvania State University, 341 Leonhard Building, University Park, PA 16802
| | - Joan T Richtsmeier
- Department of Anthropology, The Pennsylvania State University, 409 Carpenter Building, University Park, PA 16802
| | - Reuben H Kraft
- The Penn State Computational Biomechanics Group, Department of Mechanical and Nuclear Engineering, Department of Biomedical Engineering, The Pennsylvania State University, 320 Leonhard Building, University Park, PA 16802
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Hua S, Zhang S, Cao W, Wang Y, Shao C, Liu C, Dong B, Shen C. Simulation of Jetting in Injection Molding Using a Finite Volume Method. Polymers (Basel) 2016; 8:E172. [PMID: 30979273 DOI: 10.3390/polym8050172] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2016] [Revised: 04/18/2016] [Accepted: 04/22/2016] [Indexed: 11/27/2022] Open
Abstract
In order to predict the jetting and the subsequent buckling flow more accurately, a three dimensional melt flow model was established on a viscous, incompressible, and non-isothermal fluid, and a control volume-based finite volume method was employed to discretize the governing equations. A two-fold iterative method was proposed to decouple the dependence among pressure, velocity, and temperature so as to reduce the computation and improve the numerical stability. Based on the proposed theoretical model and numerical method, a program code was developed to simulate melt front progress and flow fields. The numerical simulations for different injection speeds, melt temperatures, and gate locations were carried out to explore the jetting mechanism. The results indicate the filling pattern depends on the competition between inertial and viscous forces. When inertial force exceeds the viscous force jetting occurs, then it changes to a buckling flow as the viscous force competes over the inertial force. Once the melt contacts with the mold wall, the melt filling switches to conventional sequential filling mode. Numerical results also indicate jetting length increases with injection speed but changes little with melt temperature. The reasonable agreements between simulated and experimental jetting length and buckling frequency imply the proposed method is valid for jetting simulation.
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30
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Lee C, Richtsmeier JT, Kraft RH. A computational analysis of bone formation in the cranial vault in the mouse. Front Bioeng Biotechnol 2015; 3:24. [PMID: 25853124 PMCID: PMC4365500 DOI: 10.3389/fbioe.2015.00024] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2014] [Accepted: 02/18/2015] [Indexed: 11/13/2022] Open
Abstract
Bones of the cranial vault are formed by the differentiation of mesenchymal cells into osteoblasts on a surface that surrounds the brain, eventually forming mineralized bone. Signaling pathways causative for cell differentiation include the actions of extracellular proteins driven by information from genes. We assume that the interaction of cells and extracellular molecules, which are associated with cell differentiation, can be modeled using Turing's reaction-diffusion model, a mathematical model for pattern formation controlled by two interacting molecules (activator and inhibitor). In this study, we hypothesize that regions of high concentration of an activator develop into primary centers of ossification, the earliest sites of cranial vault bone. In addition to the Turing model, we use another diffusion equation to model a morphogen (potentially the same as the morphogen associated with formation of ossification centers) associated with bone growth. These mathematical models were solved using the finite volume method. The computational domain and model parameters are determined using a large collection of experimental data showing skull bone formation in mouse at different embryonic days in mice carrying disease causing mutations and their unaffected littermates. The results show that the relative locations of the five ossification centers that form in our model occur at the same position as those identified in experimental data. As bone grows from these ossification centers, sutures form between the bones.
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Affiliation(s)
- Chanyoung Lee
- The Penn State Computational Biomechanics Group, Department of Mechanical and Nuclear Engineering, Pennsylvania State University, University Park, PA, USA
| | - Joan T. Richtsmeier
- Department of Anthropology, Pennsylvania State University, University Park, PA, USA
| | - Reuben H. Kraft
- The Penn State Computational Biomechanics Group, Department of Mechanical and Nuclear Engineering, Pennsylvania State University, University Park, PA, USA
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31
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Díaz JI, Hidalgo A, Tello L. Multiple solutions and numerical analysis to the dynamic and stationary models coupling a delayed energy balance model involving latent heat and discontinuous albedo with a deep ocean. Proc Math Phys Eng Sci 2014; 470:20140376. [PMID: 25294969 DOI: 10.1098/rspa.2014.0376] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2014] [Accepted: 07/31/2014] [Indexed: 11/12/2022] Open
Abstract
We study a climatologically important interaction of two of the main components of the geophysical system by adding an energy balance model for the averaged atmospheric temperature as dynamic boundary condition to a diagnostic ocean model having an additional spatial dimension. In this work, we give deeper insight than previous papers in the literature, mainly with respect to the 1990 pioneering model by Watts and Morantine. We are taking into consideration the latent heat for the two phase ocean as well as a possible delayed term. Non-uniqueness for the initial boundary value problem, uniqueness under a non-degeneracy condition and the existence of multiple stationary solutions are proved here. These multiplicity results suggest that an S-shaped bifurcation diagram should be expected to occur in this class of models generalizing previous energy balance models. The numerical method applied to the model is based on a finite volume scheme with nonlinear weighted essentially non-oscillatory reconstruction and Runge-Kutta total variation diminishing for time integration.
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Affiliation(s)
- J I Díaz
- Instituto de Matemática Interdisciplinar and Dept. Mat. Aplicada , Universidad Complutense de Madrid , 28040 Madrid, Spain
| | - A Hidalgo
- Dept. Matemática Aplicada y Métodos Informáticos. E.T.S.I. Minas y Energía , Universidad Politécnica de Madrid , 28003 Madrid, Spain
| | - L Tello
- Dept. Matemática Aplicada, E.T.S. Arquitectura , Universidad Politécnica de Madrid , 28040 Madrid, Spain
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Cardiff P, Karač A, FitzPatrick D, Flavin R, Ivanković A. Development of mapped stress-field boundary conditions based on a Hill-type muscle model. Int J Numer Method Biomed Eng 2014; 30:890-908. [PMID: 24706576 DOI: 10.1002/cnm.2634] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2013] [Revised: 09/23/2013] [Accepted: 02/18/2014] [Indexed: 06/03/2023]
Abstract
Forces generated in the muscles and tendons actuate the movement of the skeleton. Accurate estimation and application of these musculotendon forces in a continuum model is not a trivial matter. Frequently, musculotendon attachments are approximated as point forces; however, accurate estimation of local mechanics requires a more realistic application of musculotendon forces. This paper describes the development of mapped Hill-type muscle models as boundary conditions for a finite volume model of the hip joint, where the calculated muscle fibres map continuously between attachment sites. The applied muscle forces are calculated using active Hill-type models, where input electromyography signals are determined from gait analysis. Realistic muscle attachment sites are determined directly from tomography images. The mapped muscle boundary conditions, implemented in a finite volume structural OpenFOAM (ESI-OpenCFD, Bracknell, UK) solver, are employed to simulate the mid-stance phase of gait using a patient-specific natural hip joint, and a comparison is performed with the standard point load muscle approach. It is concluded that physiological joint loading is not accurately represented by simplistic muscle point loading conditions; however, when contact pressures are of sole interest, simplifying assumptions with regard to muscular forces may be valid.
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Affiliation(s)
- P Cardiff
- School of Mechanical and Materials Engineering, University College Dublin, Belfield, D4, Dublin, Ireland
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Vimmr J, Jonášová A, Bublík O. Numerical analysis of non-Newtonian blood flow and wall shear stress in realistic single, double and triple aorto-coronary bypasses. Int J Numer Method Biomed Eng 2013; 29:1057-1081. [PMID: 23733715 DOI: 10.1002/cnm.2560] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2012] [Revised: 04/17/2013] [Accepted: 04/19/2013] [Indexed: 06/02/2023]
Abstract
Considering the fact that hemodynamics plays an important role in the patency and overall performance of implanted bypass grafts, this work presents a numerical investigation of pulsatile non-Newtonian blood flow in three different patient-specific aorto-coronary bypasses. The three bypass models are distinguished from each other by the number of distal side-to-side and end-to-side anastomoses and denoted as single, double and triple bypasses. The mathematical model in the form of time-dependent nonlinear system of incompressible Navier-Stokes equations is coupled with the Carreau-Yasuda model describing the shear-thinning property of human blood and numerically solved using the principle of the SIMPLE algorithm and cell-centred finite volume method formulated for hybrid unstructured tetrahedral grids. The numerical results computed for non-Newtonian and Newtonian blood flow in the three aorto-coronary bypasses are compared and analysed with emphasis placed on the distribution of cycle-averaged wall shear stress and oscillatory shear index. As shown in this study, the non-Newtonian blood flow in all of the considered bypass models does not significantly differ from the Newtonian one. Our observations further suggest that, especially in the case of sequential grafts, the resulting flow field and shear stimulation are strongly influenced by the diameter of the vessels involved in the bypassing.
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Affiliation(s)
- J Vimmr
- European Centre of Excellence NTIS - New Technologies for Information Society, Faculty of Applied Sciences, University of West Bohemia, Pilsen, Czech Republic
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34
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Abstract
A new cell-vortex unstructured finite volume method for structural dynamics is assessed for simulations of structural dynamics in response to fluid motions. A robust implicit dual-time stepping method is employed to obtain time accurate solutions. The resulting system of algebraic equations is matrix-free and allows solid elements to include structure thickness, inertia, and structural stresses for accurate predictions of structural responses and stress distributions. The method is coupled with a fluid dynamics solver for fluid-structure interaction, providing a viable alternative to the finite element method for structural dynamics calculations. A mesh sensitivity test indicates that the finite volume method is at least of second-order accuracy. The method is validated by the problem of vortex-induced vibration of an elastic plate with different initial conditions and material properties. The results are in good agreement with existing numerical data and analytical solutions. The method is then applied to simulate a channel flow with an elastic wall. The effects of wall inertia and structural stresses on the fluid flow are investigated.
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