Identification and Validation of Reference Genes for RT-qPCR Analysis in Reed Canary Grass during Abiotic Stress

Reed canary grass (Phalaris arundinacea L.) is known for its tolerance to drought, heavy metals, and waterlogging, making it a popular choice for forage production and wetland restoration in the Qinghai-Tibet Plateau (QTP). To accurately assess gene expression in reed canary grass under different abiotic stresses, suitable reference genes need to be identified and validated. Thirteen candidate reference gene sequences were selected and screened using RT-qPCR to detect their expression levels in reed canary grass leaves under drought, salt, cadmium, and waterlogging stresses. Four algorithms were used to assess the stability of the expression levels of the candidate reference genes. The most stably expressed genes were UBC and H3 under drought Cd, ETF and CYT under salt stress, and ETF and TUB under waterlogging stress. GAPDH was found to be less stable under abiotic stresses. PIP-1, PAL, NAC 90, and WRKY 72A were selected as response genes for quantitative expression assessment under drought, salt, Cd, and waterlogging stresses to confirm the accuracy of the selected stable reference genes. These results provide a theoretical reference for assessing gene expression in reed canary grass under abiotic stresses.

Application of Molecular Dynamics Simulations to Determine Interactions between Canary Seed (Phalaris canariensis L.) Bioactive Peptides and Skin-Aging Enzymes

Food bioactive peptides are well recognized for their health benefits such as antimicrobial, antioxidant, and antihypertensive benefits, among others. Their drug-like behavior has led to their potential use in targeting skin-related aging factors like the inhibition of enzymes related with the skin-aging process. In this study, canary seed peptides (CSP) after simulated gastrointestinal digestion (<3 kDa) were fractioned by RP-HPLC and their enzyme-inhibition activity towards elastase and tyrosinase was evaluated in vitro. CSP inhibited elastase (IC50 = 6.2 mg/mL) and tyrosinase (IC50 = 6.1 mg/mL), while the hydrophobic fraction-VI (0.2 mg/mL) showed the highest inhibition towards elastase (93%) and tyrosinase (67%). The peptide fraction with the highest inhibition was further characterized by a multilevel in silico workflow, including physicochemical descriptor calculations, antioxidant activity predictions, and molecular dynamics-ensemble docking towards elastase and tyrosinase. To gain insights into the skin permeation process during molecular dynamics simulations, based on their docking scores, five peptides (GGWH, VPPH, EGLEPNHRVE, FLPH, and RPVNKYTPPQ) were identified to have favorable intermolecular interactions, such as hydrogen bonding of polar residues (W, H, and K) to lipid polar groups and 2-3 Å van der Waals close contact of hydrophobic aliphatic residues (P, V, and L). These interactions can play a critical role for the passive insertion of peptides into stratum corneum model skin-membranes, suggesting a promising application of CSP for skin-aging treatments.

Canary Seed (Phalaris canariensis L.) Peptides Prevent Obesity and Glucose Intolerance in Mice Fed a Western Diet

Previous research showed that canary seed (Phalaris canariensis L.) peptides (CSP) possess robust in vitro antiobesity properties via inhibition of pancreatic lipase (PL). Nevertheless, no studies have yet explored their antiobesity properties in vivo. Consequently, we investigated the effects of CSP in C57BL/6J mice under a Western diet (WD). Mice were assigned into groups and fed a normal diet (ND) or a WD accompanied by an oral dose of CSP (250 or 500 mg/kg/day), orlistat (40 mg/kg/day), or distilled water. The results showed that consuming CSP can provide metabolic benefits, including preventing weight gain by up to 20%, increasing glucose tolerance, and reducing insulin, leptin, and LDL/VLDL levels in plasma. Conversely, total ghrelin was unaffected by CSP-500, but decreased by CSP-250, and amplified by orlistat. Surprisingly, CSP-250 was more effective in preventing weight gain and promoting satiety than CSP-500. Parallel to this, protein absorption in CSP-500 was decreased, supported by a rise in fecal crude protein (+3.5%). Similarly, fecal fat was increased by orlistat (38%) and was unaffected by CSP-250 (3.0%) and CSP (3.0%), comparatively to WD (2.5%). Despite this, both CSP treatments were equally effective in decreasing hepatic steatosis and avoiding hyperlipidemia. Furthermore, the enzymatic analysis showed that CSP-PL complexes dissociated faster (15 min) than orlistat-PL complexes (41 min). Lastly, CSP did not affect expression of hepatic lipid oxidation genes ACO and PPAR-α, but reduced the expression of the hydrolase gene LPL, and lipogenesis related genes FAS and ACC. Taken together, these results suggest that CSP antiobesity mechanism relies on lipid metabolism retardation to increase fat transit time and subsequently suppress hunger.

Recovery of microelements from municipal sewage sludge by reed canary grass and giant miscanthus

The aim of the study was to evaluate the content, uptake, and utilization of Al, Mn, Fe, Co, and Mo from municipal sewage sludge by the reed canary grass (RCG) and the giant miscanthus (MG). The impact of sewage sludge on the mass ratios between microelements contained in the plant biomass was analyzed as well. The long-term field experiment consisted in application of four levels of fertilization with sewage sludge: 10, 20, 40, and 60 Mg DM·ha^-1. A non-fertilized control object (0 Mg DM·ha^-1) was used as well. The miscanthus biomass was characterized by higher content of Al and Mn, whereas higher levels of Fe, Co, and Mo were determined in the reed canary grass biomass. As in the case of the element content, the giant miscanthus was characterized by highest level of Al and Mn uptake, while the highest uptake of Fe, Co, and Mo was exhibited by the reed canary grass. In the group of the analyzed microelements, the giant miscanthus showed the highest the recovery of Mo (47%) followed by Mn (39%), Fe (35%), and Co (15%), and the lowest uptake was determined in the case of Al (5%).

Possibility of Metal Accumulation in Reed Canary Grass (Phalaris arundinacea L.) in the Aquatic Environment of South-Western Polish Rivers

A four-year research study was conducted on aquatic plants (reed canary grass) growing in the beds of three rivers and their tributaries in Lower Silesia, Poland. Metal contents (Cu, Cd, Ni, Pb, Zn, Fe, Mn) were determined in plant samples, metal accumulation in water (BCFw) and sediment (BCFB), Metal Pollution Index (MPI) and Enrichment Factor (EF) were calculated. The highest contents of copper, lead, nickel and cadmium were found in reed canary grass sampled from the Nysa Szalona River. The highest values were recorded for zinc in the Bystrzyca River, and for iron and manganese in the Strzegomka River. The series of metals were as follows: Nysa Szalona and Strzegomka: Cd < Ni < Pb < Cu < Zn < Mn < Fe, Bystrzyca: Cd < Ni < Cu < Pb < Zn < Mn < Fe. Throughout the study period, the lowest values of metals in plants were recorded in 2015 and 2018, and the highest in 2017. The general picture of MPI in aquatic plants is arranged in the series Bystrzyca < Strzegomka < Nysa Szalona. These values classify the studied material at a high level of pollution in all rivers. In the comparison of the two extreme sites, i.e., source−mouth, higher values were found at the mouth of the reservoir, which suggests that metals move with the water current and accumulate more with the direction of the river flow, which is most likely a consequence of the influence of the catchment area as the source of metals. The series of EF enrichment factor values were as follows: Bystrzyca—Ni < Cd < Fe < Cu < Zn < Mn < Pb, Nysa Szalona—Ni < Fe < Zn < Cd < Mn < Cu < Pb, Strzegomka—Ni < Cd < Fe < Zn < Cu < Pb < Mn. For all the samples studied, the values found in spring were much higher than in autumn, which indicates the great importance for research in that area. The levels of copper and iron were within the range of moderate values, lead and manganese reached very high and exceptionally high values, and the remaining metals were within the values described as significant. Bioaccumulation of metals determined relative to bottom sediments was highest in 2017 and lowest in 2018, while bioaccumulation relative to water was highest in 2018 and lowest in 2016. The four-year study found that the metal content in reed canary grass was mostly within the range of mean values presented in the literature from moderately polluted areas. Also, no significant deviation was found from levels that have been recorded for the same rivers for more than two decades.

Oxidative Stress Protection by Canary Seed (Phalaris canariensis L.) Peptides in Caco-2 Cells and Caenorhabditis elegans

During oxidative stress, degenerative diseases such as atherosclerosis, Alzheimer’s, and certain cancers are likely to develop. Recent research on canary seed (Phalaris canariensis) peptides has demonstrated the high in vitro antioxidant potential. Thus, this study aimed to assess the cellular and in vivo antioxidant capacity of a low-molecular-weight (<3 kDa) canary seed peptide fraction (CSPF) using Caco-2 cells and the Caenorhabditis elegans model. The results show that the CSPF had no cytotoxicity effect on Caco-2 cells at any tested concentration (0.3−2.5 mg/mL). Additionally, the cellular antioxidant activity (CAA) of the CSPF was concentration-dependent, and the highest activity achieved was 80% by the CSPF at 2.5 mg/mL. Similarly, incubation with the CSPF significantly mitigated the acute and chronic oxidative damage, extending the lifespan of the nematodes by 88 and 61%, respectively. Furthermore, it was demonstrated that the CSPF reduced the accumulation of reactive oxygen species (ROS) to safe levels after sub-lethal doses of pro-oxidant paraquat. Quantitative real-time PCR revealed that the CSPF increased the expression of oxidative-stress-response-related gene GST-4. Overall, these results show that the CSPFs relied on GST-4 upregulation and scavenging of free radicals to confer oxidative stress protection and suggest that a CSPF can be used as a natural antioxidant in foods for health applications.

Field application of allelopathic bacteria to control invasion of little seed canary grass in wheat

Development of successful biological weed control can help to resolve various environmental challenges created by the chemical and mechanical weed control. The current study is aimed at investigating the potential of allelopathic bacteria (hereinafter as AB) for biological weed control in wheat rather than the traditional areas of plant allelopathy, phyto-pathology, and insect biocontrol agents. Eleven strains of AB were obtained that were inhibitory to little seed canary grass of which 5 also inhibited wheat in our previous studies. The remaining strains indicated the potential for biological control of this weed in wheat. Five efficient strains were selected for this purpose to conduct pot and field trials. Seeds of little seed canary grass were sown together in potted soils with wheat seeds inoculated with AB strains. A subsequent field trial was conducted at a site selected based on chronic infestations of canary grass. Seeds of the weed and inoculated wheat were co-seeded directly in field soil. For inoculation, these strains were formulated in sterilized peat and applied to seeds. In pot trials, the invasion of little seed canary grass in wheat reduced wheat grain yield up to 59.9%. Four strains suppressed the weed which resulted in recovery wheat grain yield losses from 20.1 to 66.9%. The field trial showed that the invasion of little seed canary grass reduced wheat grain yields up to 53.9%. Four strains suppressed the weed which resulted into recovery of grain wheat grain yield losses 34.3 to 64.3%. These findings were consistent with improvement of other agronomic, physiological, and chemical parameters of the crop where the four strains of AB (L9, T42, 7O₀, and O₀10) were applied.

A wetland plant, Phalaris arundinacea, accumulates nitrogen and phosphorus during senescence

Secondary pollution resulting from shoot death is a difficult problem that complicated the application of wetland plants for water purification in northern wetlands. Phalaris arundinacea, a perennial herb with an obviously declining stage, or senescence, is a species that is often selected for water purification in Northern China; however, whether it reduces the secondary pollution risk via nitrogen (N) and phosphorus (P) accumulation during senescence or not remains unclear. To investigate this question, an experiment was conducted with containerized plants during the winter of 2016, after roughly half the leaves on the plants had withered. The experimental observations and analyses were conducted within 0, 2, 4, 6, and 8 weeks of the initiation of senescence. Results revealed that leaves continued to wither and shoot death occurred during weeks 4 to 6 and 8 to 10, respectively. However, no significant differences occurred in fresh biomass or in N and P accumulations of a single plant during senescence. The root biomass, root weight per volume, and total N content increased significantly, while total P content remained stable when leaves withered, respectively. H⁺-ATPase, a key enzyme for ion transportation, decreased after the leaves withered. However, root activity, evaluated by absorption surface per root volume, remained stable, and percentage of fine root length (diameter < 1 mm) increased significantly during senescence. In conclusion, the root activity and morphology enables P. arundinacea to accumulate N and P during senescence, which makes it a good choice for water purification in northern wetlands.

Diterpenes from seeds of Phalaris canariensis and their PTP1B inhibitory activity and hypoglycemic effects in streptozotocin-induced diabetic mice

This present study was to evaluate the protein tyrosine phosphatase 1B (PTP1B) inhibitory activity of nine diterpenes isolated from seeds of Phalaris canariensis, as well as their effect on streptozotocin-nicotinamide-induced type 2 diabetic mice. Their structures were established by spectroscopic analyses. Diterpenes, 1, 4, and 2 exhibited the strongest inhibitory activity on PTP1B with IC₅₀ values of 6.9, 7.3, and 6.5 µM, respectively, The administration of 1-9 showed significant effect on hyperglycemia, among them 1, 4, and 2 reduced fasting glucose levels (55.65%, 54.27%, and 51.22%, respectively). Results revealed that diterpenes performed potential antidiabetic activity via inhibition of PTP1B.[Formula: see text].

Transcriptome characterization and differentially expressed genes under flooding and drought stress in the biomass grasses Phalaris arundinacea and Dactylis glomerata

BACKGROUND AND AIMS

Perennial grasses are a global resource as forage, and for alternative uses in bioenergy and as raw materials for the processing industry. Marginal lands can be valuable for perennial biomass grass production, if perennial biomass grasses can cope with adverse abiotic environmental stresses such as drought and waterlogging.

METHODS

In this study, two perennial grass species, reed canary grass (Phalaris arundinacea) and cocksfoot (Dactylis glomerata) were subjected to drought and waterlogging stress to study their responses for insights to improving environmental stress tolerance. Physiological responses were recorded, reference transcriptomes established and differential gene expression investigated between control and stress conditions. We applied a robust non-parametric method, RoDEO, based on rank ordering of transcripts to investigate differential gene expression. Furthermore, we extended and validated vRoDEO for comparing samples with varying sequencing depths.

KEY RESULTS

This allowed us to identify expressed genes under drought and waterlogging whilst using only a limited number of RNA sequencing experiments. Validating the methodology, several differentially expressed candidate genes involved in the stage 3 step-wise scheme in detoxification and degradation of xenobiotics were recovered, while several novel stress-related genes classified as of unknown function were discovered.

CONCLUSIONS

Reed canary grass is a species coping particularly well with flooding conditions, but this study adds novel information on how its transcriptome reacts under drought stress. We built extensive transcriptomes for the two investigated C3 species cocksfoot and reed canary grass under both extremes of water stress to provide a clear comparison amongst the two species to broaden our horizon for comparative studies, but further confirmation of the data would be ideal to obtain a more detailed picture.

combined with compost and nano SiO2 fertilization for the removal of PAH's from soil

The paper presents an evaluation of efficiency and economic potential of the phytoremediation technology, based on the use of energy crops (P. arundinacea L. and B. Napus L.), combined with the fertilization with compost, supported by the addition of nano SiO₂. The experiment was conducted in in-situ conditions, using two experimental blocks, divided according to used plant species. Each block included four types of plots with different fertilization treatments (control plots; treatment with nano SiO₂; treatment with compost; treatment with mixture of compost and nano SiO₂). During the studied period (three vegetation seasons), a cyclic analysis of 16 PAH's content were conducted. Furthermore, a quantitative determination of biomass production was performed as well as assessment of economic potential of different strategies. Data collected during research, shows that method based on energy crops use, due to the join effect of the dangerous pollutants removal and the production of removable energy resource, can be considered as sustainable and should be recommended for use during heavy polluted soil remediation. Moreover, it should be also noted, that the best results for both PAH's removal efficiency and biomass production, were acquired on plots with P. arundinacea L. cultivation, fertilized with mix of compost and nano SiO₂.

Environmental factors associated with the distribution of floodwater mosquito eggs in irrigated fields in Wrocław, Poland

A survey of distribution patterns of floodwater mosquito eggs related to environmental conditions such as moisture and plant associations was conducted by using soil samples from irrigated fields in Wrocław, Poland. Mosquito egg distribution was determined by repeatedly flooding the soil samples with aerated water at a temperature of 25° C. Under laboratory conditions, hatching in installments of Aedes caspius (Pallas) and Aedes vexans (Meigen) were commonly observed. The results show that ∼75% of the larvae of Ae. caspius and Ae. vexans hatched after the first flooding under summer-like conditions, whereas, following the second and third flooding, the numbers of hatched larvae were significantly lower. In our study, within one intermediate flooded field, a total of 66 plant species was identified and classified into six communities. All vegetation types were associated by varied egg densities and showed differences both in richness and Shannon-Wiener diversity index as well as in ecological indices for moisture, soil reaction, and nutrient level. Small changes in elevation along the slope within the study area showed a large difference in the distribution of mosquito eggs. The highest average egg density was observed in zones with high occurrence of Phalaris arundinacea, usually prevalent in intermediate flooded and fertile areas. Knowledge of the indicators for the distribution of floodwater mosquito eggs in temporary breeding sites may be essential for organizing a successful, integrated mosquito control program with special regard to microbial control agents.

Differential sorption behaviour of aromatic hydrocarbons on charcoals prepared at different temperatures from grass and wood

Naturally occurring charcoals are increasingly being recognized as effective sorbents for organic compounds. In this study we investigated the sorption of benzene and toluene in single-sorbate and bi-sorbate systems on different types of charcoals produced in laboratory, employing the batch sorption technique. Air dried plant materials from Phalaris grass (Phalaris tuberosa) and Red Gum wood (Eucalyptus camadulensis) were combusted under limited oxygen supply at 250 degrees C, 450 degrees C, and 850 degrees C. The resulting charcoals were characterized for their specific surface areas, total cation content, and pore size distributions (pore size distribution only for wood combusted at 450 degrees C and 850 degrees C). For the materials treated at 850 degrees C not only the surface area, microporosity, and total amount of sorbed sorbate increased markedly, but also the non-linearity of the sorption isotherm. The pore size distributions and surface areas as well as an indifferent sorption behaviour and competition effects for both sorbates indicated that pore filling mechanisms were the dominating processes governing the sorption on these microporous, high temperature treated materials. For the materials treated at lower temperatures the affinity of toluene was higher compared to that of benzene. In the bi-sorbate system the overall uptake of benzene increased. These phenomena might be due to the stronger hydrophobicity of toluene, and to a varying potential for swelling of the matrix and pore deformation by the two sorbates. The significantly lower sorption capacity of the Phalaris-derived material compared to the Red Gum charcoal correlated with its smaller surface area and higher cation content.

Root penetration of sealing layers made of fly ash and sewage sludge

Fly ash and sewage sludge are suggested materials for constructing sealing layers covering mine tailings impoundments. Little is known, however, of their effect on vegetation or resistance to root penetration. We investigate: (i) the ability of different plant species to grow in sealing layers comprising fly ash and sewage sludge, (ii) the impact on plant growth of freshly hardened fly ash compared to aged and leached ash, and (iii) the plant stress response to fly ashes of different properties. A 6-mo greenhouse study using birch (Betula pendula Roth.), Scots pine (Pinus sylvestris L.), Kentucky bluegrass (Poa pratensis L.), and willow (Salix viminalis L.) demonstrated that no roots could grow into a compacted layer consisting only of ash, while a 6:4, ash-sludge mixture admitted roots into the upper part and a 1:9, ash-sludge mixture was totally penetrated (to 15 cm in depth) by roots of willow and Scots pine. Freshly hardened ash prevented root growth more effectively than aged ash did, as was observed in tests using reed canarygrass (Phalaris arundinacea L.) and pea (Pisum sativum L.). Furthermore, extracts of highly alkaline ash were more toxic to pea in a 48-h toxicity test than less alkaline ash was. However, stress responses to diluted ash extracts of lower pH, measured as enzyme capacities in dwarf bean (Phaseolus vulgaris L.), were more related to the metal and ion contents. Root penetration of sealing layers is most effectively prevented if little sewage sludge is added, and if ash of high alkalinity is chosen.

Studies on palauan medicinal herbs. II. Activation of mouse macrophages RAW 264.7 by Ongael, leaves of Phaleria cumingii (Meisn.) F. Vill. and its acylglucosylsterols

The extract of Ongael [leaves of Phaleria cumingii (MEISN.) F. VILL.], a Palauan medicinal herb, enhanced an in vitro phagocytic activity of mouse macrophages RAW 264.7 cells (RAW 264.7). Activity-guided fractionation of the Ongael extract by the in vitro phagocytosis assay using RAW 264.7 led to the isolation of a mixture of acylglucosylsterols (1) as an active constituent along with other inactive constituents, tetracosanol and mangiferin. On the basis of chemical modifications and spectral analyses, the compound 1 was deduced to be a mixture of the known 3-O-(6-O-acyl-beta-D-glucosyl)-beta-sitosterols, the acyl moiety being mainly palmitoyl (57%), oleoyl (12%) and alpha-linolenoyl (12%) with small amount of stearoyl (7%) and linoleoyl (4%).

Emissions from small-scale energy production using co-combustion of biofuel and the dry fraction of household waste

In sparsely populated rural areas, recycling of household waste might not always be the most environmentally advantageous solution due to the total amount of transport involved. In this study, an alternative approach to recycling has been tested using efficient small-scale biofuel boilers for co-combustion of biofuel and high-energy waste. The dry combustible fraction of source-sorted household waste was mixed with the energy crop reed canary-grass (Phalaris Arundinacea L.), and combusted in both a 5-kW pilot scale reactor and a biofuel boiler with 140-180 kW output capacity, in the form of pellets and briquettes, respectively. The chlorine content of the waste fraction was 0.2%, most of which originated from plastics. The HCl emissions exceeded levels stipulated in new EU-directives, but levels of equal magnitude were also generated from combustion of the pure biofuel. Addition of waste to the biofuel did not give any apparent increase in emissions of organic compounds. Dioxin levels were close to stipulated limits. With further refinement of combustion equipment, small-scale co-combustion systems have the potential to comply with emission regulations.

A biological oil adsorption filter

A new oil adsorption method called adsorption filtration (AF) has been developed. It is a technology where by oil residues can be cleaned from water by running it through a simple filter made from freeze treated, dried, milled and then fragmented plant material. By choosing suitable plants and fragmentation sizes it is possible to produce filters, which pass water but adsorb oil. The aim of this study was to investigate the possibilities of manufacturing oil adsorbing filter materials from reed canary grass (Phalaris arundinacea), flax (Linum usitatissimum L.) or hemp fibre (Cannabis sativa L.). The oil (80 ml) was mixed with de-ionised water (200 ml) and this mixture was filtered through 10 or 20 g adsorption filters. Fine spring harvested hemp fibre (diameter less than 1 mm) and reed canary grass fragments adsorb 2-4 g of oil per gram of adsorption material compared to 1-3 g of water. Adsorption filtration is thus a novel way of gathering spilled oil in shallow coastal waters before the oil reaches the shore.