Influence of biochar in the calcite precipitation of sandy soil using sporosarcina ureae

The microbially induced calcium carbonate precipitation (MICP) technology is an emerging novel and sustainable technique for soil stabilization and remediation. MICP, a microorganism-mediated biomineralization process, has attracted interest for its potential to enhance soil characteristics. The inclusion of biochar, a carbon-rich substance formed by biomass pyrolysis, adds another degree of intricacy to this process. The study highlights the impact of the combination of biochar and MICP together, using a bacterium, Sporosarcina ureae, on soil improvement. This blend of MICP and biochar improved the soil in terms of its geotechnical properties and also enabled the sequestering of carbon safely. It was observed that addition of 4% biochar significantly increased the soil's shear strength parameters (c and φ) as well as its stiffness after 21 treatment cycles. This improvement was because the calcium carbonate precipitate, which acts as a crucial binding agent, increased significantly due to microbial action in the soil-biochar mixture compared to the pure soil sample. The excess carbonate precipitation on account of biochar addition was verified through SEM-EDAX analysis where the images showed noteworthy carbonate precipitation on the surface of particles and increment in the calcium mass at the same treatment cycles when compared with untreated sand. The collaboration between MICP and biochar effectively increased the carbon sequestration within the sand sample. It was observed that at 21 cycles of treatment, the carbon storage within the sand sample increased by almost 3 times at 4% biochar compared to sand without any biochar. The statistical analysis further affirmed that strength depends on both biochar and the number of treatment cycles, whereas carbon sequestration potential is primarily influenced by the biochar content alone. This strategy, as a sustainable and environmentally friendly approach, has the potential to reform soil improvement practices and contribute to both soil strength enhancement and climate change mitigation, supporting the maintenance of ecological balance.

Biogenic calcium improved Cd2+ and Pb2+ immobilization in soil using the ureolytic bacteria Bacillus pasteurii

Bioremediation based on microbial-induced carbonate precipitation (MICP) was conducted in cadmium and lead contaminated soil to investigate the effects of MICP on Cd and Pb in soil. In this study, soil indigenous nitrogen was shown to induce MICP to stabilize heavy metals without inputting exogenous urea. The results showed that applying Bacillus pasteurii coupled with CaCl2 reduced Cd and Pb bioavailability, which could be clarified through the proportion of exchangeable Cd and Pb in soil decreasing by 23.65 % and 12.76 %, respectively. Moreover, B. pasteurii was combined separately with hydroxyapatite (HAP), eggshells (ES), and oyster shells (OS) to investigate their effects on soil heavy metals' chemical fractions, toxicity characteristic leaching procedure (TCLP)-extractable Cd and Pb as well as enzymatic activity. Results showed that applying B. pasteurii in soil significantly decreased the heavy metals in the exchangeable fraction and increased them in the carbonate phase fraction. When B. pasteurii was combined with ES and OS, the content of carbonate-bound Cd increased by 114.72 % and 118.81 %, respectively, significantly higher than when B. pasteurii was combined with HAP, wherein the fraction of carbonate-bound Cd increased by 86 %. The combination of B. pasteurii and biogenic calcium effectively reduced the leached contents of Cd and Pb in soil, and the TCLP-extractable Cd and Pb fractions decreased by 43.88 % and 30.66 %, respectively, in the BP + ES group and by 52.60 % and 41.77 %, respectively, in the BP + OS group. This proved that MICP reduced heavy metal bioavailability in the soil. Meanwhile, applying B. pasteurii and calcium materials significantly increased the soil urease enzyme activity. The microstructure and chemical composition of the soil samples were studied, and the results from scanning electron microscope, Fourier transform infra-red spectroscopy, and X-ray diffraction demonstrated the MICP process and identified the formation of CaCO3, Ca0.67Cd0.33CO3, and PbCO3 in heavy metal-contaminated soil.

Feeding strategies for Sporosarcina pasteurii cultivation unlock more efficient production of ureolytic biomass for MICP

The bacterium Sporosarcina pasteurii is the most commonly used microorganism for Microbial Induced Calcite Precipitation (MICP) due to its high urease activity. To date, no proper fed-batch cultivation protocol for S. pasteurii has been published, even though this cultivation method has a high potential for reducing costs of producing microbial ureolytic biomass. This study focusses on fed-batch cultivation of S. pasteurii DSM33. The study distinguishes between limited fed-batch cultivation and extended batch cultivation. Simply feeding glucose to a S. pasteurii culture does not seem beneficial. However, it was exploited that S. pasteurii is auxotrophic for two vitamins and amino acids. Limited fed-batch cultivation was accomplished by feeding the necessary vitamins or amino acids to a culture lacking them. Feeding nicotinic acid to a nicotinic acid deprived culture resulted in a 24% increase of the specific urease activity compared to a fed culture without nicotinic acid limitation. Also, extended batch cultivation was explored. Feeding a mixture of glucose and yeast extract results in OD600 of ≈70 at the end of cultivation, which is the highest value published in literature so far. These results have the potential to make MICP applications economically viable.

Biotrapping Ureolytic Bacteria on Sand to Improve the Efficiency of Biocementation

Microbially induced calcium carbonate precipitation (MICP) has emerged as a novel technology with the potential to produce building materials through lower-temperature processes. The formation of calcium carbonate bridges in MICP allows the biocementation of aggregate particles to produce biobricks. Current approaches require several pulses of microbes and mineralization media to increase the quantity of calcium carbonate minerals and improve the strength of the material, thus leading to a reduction in sustainability. One potential technique to improve the efficiency of strength development involves trapping the bacteria on the aggregate surfaces using silane coupling agents such as positively charged 3-aminopropyl-methyl-diethoxysilane (APMDES). This treatment traps bacteria on sand through electrostatic interactions that attract negatively charged walls of bacteria to positively charged amine groups. The APMDES treatment promoted an abundant and immediate association of bacteria with sand, increasing the spatial density of ureolytic microbes on sand and promoting efficient initial calcium carbonate precipitation. Though microbial viability was compromised by treatment, urea hydrolysis was minimally affected. Strength was gained much more rapidly for the APMDES-treated sand than for the untreated sand. Three injections of bacteria and biomineralization media using APMDES-treated sand led to the same strength gain as seven injections using untreated sand. The higher strength with APMDES treatment was not explained by increased calcium carbonate accrual in the structure and may be influenced by additional factors such as differences in the microstructure of calcium carbonate bridges between sand particles. Overall, incorporating pretreatment methods, such as amine silane coupling agents, opens a new avenue in biomineralization research by producing materials with an improved efficiency and sustainability.

Bioreduction and mineralization of Cr(VI) by Sporosarcina saromensis W5 induced carbonate precipitation

The microbial reduction of Cr(VI) to Cr(III) is widely applied, but most studies ignored the stability of reduction products. In this study, the Cr(VI)-reducing bacterium of Sporosarcina saromensis combined with microbially induced carbonate precipitation (MICP) was used to explore the reduction and mineralization mechanisms of Cr(VI). The results indicated that the high concentration of Ca2+ could significantly enhance the reduction and mineralization of Cr(VI). The highest reduction and mineralization efficiencies of 99.5% and 55.9% were achieved at 4 g/L Ca2+. Moreover, the urease activity of S. saromensis in the experimental group was up to 13.28 U/mg NH3-N. Besides, the characteristic results revealed that Cr(VI) and reduced Cr(III) were absorbed on the surface or got into the interspace of CaCO3, which produced a new stable phase (Ca10Cr6O24(CO3)). Overall, the combination of S. saromensis and MICP technology might be a high-efficiency and environmentally friendly strategy for further application in the Cr(VI)-containing groundwater.

Application of urease-producing microbial community in seawater to dust suppression in desert

In order to solve the dust problem caused by sandstorms, this paper aims to propose a new method of enriching urease-producing microbial communities in seawater in a non-sterile environment. Besides, the difference of dust suppression performance of enriched microorganisms under different pH conditions was also explored to adapt the dust. The Fourier-transform infrared spectrometry (FTIR) and Scanning electron microscopy (SEM) confirmed the formation of CaCO₃. The X-ray diffraction (XRD) further showed that the crystal forms of CaCO₃ were calcite and vaterite. When urease activity was equivalent, the alkaline environment was conducive to the transformation of CaCO₃ to more stable calcite. The mineralization rate at pH = 10 reached the maximum value on the 7^th day, which was 97.49 ± 1.73%. Moreover, microbial community analysis results showed that the relative abundance of microbial community structure was different under different pH enrichment. Besides, the relative abundance of Sporosarcina, a representative genus of urease-producing microbial community, increased with the increase of pH under culture conditions, which consistent with the mineralization performance results. In addition, the genus level species network diagram also showed that in the microbial community, Sporosarcina was negatively correlated with another urease-producing genus Bacillus, and had a reciprocal relationship with Atopostipes, which means that the urease-producing microbial community was structurally stable. The enrichment of urease-producing microbial communities in seawater will provide empirical support for the large-scale engineering application of MICP technology in preventing and controlling sandstorms in deserts.

Microdroplet-Based In Situ Characterization Of The Dynamic Evolution Of Amorphous Calcium Carbonate during Microbially Induced Calcium Carbonate Precipitation

Amorphous calcium carbonate (ACC) plays an important role in microbially induced calcium carbonate precipitation (MICP), which has great potential in broad applications such as building restoration, CO₂ sequestration, and bioremediation of heavy metals, etc. However, our understanding of ACC is still limited. By combining microscopy of cell-laden microdroplets with confocal Raman microspectroscopy, we investigated the ACC dynamics during MICP. The results show that MICP inside droplets can be divided into three stages: liquid, gel-like ACC, and precipitated CaCO₃ stages. In the liquid stage, the droplets are transparent. As the MICP process continues into the gel-like stage, the ACC structure appears and the droplets become opaque. Subsequently, dissolution of the gel-like structure is accompanied by growth of precipitated CaCO₃ crystals. The size, morphology, and lifetime of the gel-like structures depend on the Ca²⁺ concentration. Using polystyrene colloids as tracers, we find that the colloids exhibit diffusive behavior in both the liquid and precipitated CaCO₃ stages, while their motion becomes arrested in the gel-like ACC stage. These results provide direct evidence for the formation-dissolution process of the ACC-formed structure and its gel-like mechanical properties. Our work provides a detailed view of the time evolution of ACC and its mechanical properties at the microscale level, which has been lacking in previous studies.

Multiple heavy metal immobilization and strength improvement of contaminated soil using bio-mediated calcite precipitation technique

Bio-mediated calcite precipitation potential for multiple heavy metal immobilization in contaminated soils at industrial, waste dump, abandoned mine, and landfill sites is not explored yet. This study includes investigation of bio-mediated calcite precipitation for strength improvement and immobilization of heavy metals, specifically lead (Pb), zinc (Zn), and hexavalent chromium (Cr(VI)), in contaminated soils. Firstly, the toxicity resistance of bacteria against different concentrations (1000, 2000, 3000, 4000, and 5000 mg/l) of each heavy metals was investigated and observed that Pb and Cr were less toxic to Sporosarcina pasteurii than Zn. The poorly graded sand was spiked with 333-2000 mg/kg concentrations of a selected individual or mixed metal solutions, i.e., 1000 mg/kg and 2000 mg/kg individual concentrations of Pb, Zn, and Cr(VI); 500 mg/kg and 1000 mg/kg concentration of each metal in "Pb and Zn," "Pb and Cr(VI)," and "Zn and Cr(VI)" mixture of heavy metals; and 333 mg/kg and 666 mg/kg concentration of each metal in "Pb, Zn, and Cr(VI)" mixed metal concentration. Contaminated soil was biotreated with Sporosarcina pasteurii and cementation (a solution of urea and calcium chloride dihydrate) solutions for 18 days. Biocemented sand specimens were subjected to testing of hydraulic conductivity, ultrasonic pulse velocity (UPV), unconfined compressive strength (UCS), calcite content, pH, toxicity characteristic leaching procedure (TCLP), X-ray diffraction (XRD), and scanning electron microscopy (SEM). The heavy metal contaminated samples showed decrease in hydraulic conductivity and increase in UPV and UCS after biotreatment; however, the changes in engineering properties were found more moderate than clean biocemented sand. The conversion of Cr(VI) to Cr(III) followed by Cr₂O₃ precipitation in calcite lattice was observed. Zn was precipitated as smithsonite (ZnCO₃), while no Pb precipitate was identified in XRD results. TCLP leaching showed Pb and Cr immobilized proportional to calcite precipitated amount, and higher calcite amounts yielded levels within regulatory limits. Pb and Cr(VI) immobilization up to 92 % and 94 % was achieved, respectively, in contaminated biocemented sand. Zn was found completely leachable as smithsonite is only stable down to pH~5, and strongly acidic TCLP solution reversed all immobilization at natural soil pH~8-9.

Column study of enhanced Cr(VI) removal by bio-permeable reactive barrier constructed from novel iron-based material and Sporosarcina saromensis W5

In this study, the feasibility of Cr(VI) removal from synthetic groundwater by bio-permeable reactive barrier constructed from novel iron-based material (SiO₂/nano-FeC₂O₄ composite, SNFC) and Sporosarcina saromensis W5 was investigated. According to breakthrough study, an enhanced Cr(VI) removal was found in Bio-SNFC column. The Cr(VI) removal performances of biotic column with 0.2 g biomass and 0.4 g biomass were 16.2 mg/g and 17.9 mg/g, respectively, which were 19.6% and 32.1% higher than that of abiotic column (13.5 mg/g). However, excessive biomass (0.9 g) would cause pore clogging and have a negative impact on the Cr(VI) removal performance of the biotic column, whose removal capability (29.1%) was lower than that of abiotic column. The introduction of proper microorganisms enhanced the utilization of iron and enabled a higher proportion of Fe(II) in biotic column, which provided more reactive sites for Cr(VI) removal. The solid phase characterization indicated the generation of Fe(III) oxide/hydroxide on SNFC surface. The removal of Cr(VI) in Bio-SNFC column was depended on reduction-precipitation, and the final products related to chromium were mainly Cr(OH)₃ and Cr₂O₃. The present work provides a new and sustainable remediation technology for in situ bioremediation of Cr(VI)-contaminated groundwater.

A quantitative, high-throughput urease activity assay for comparison and rapid screening of ureolytic bacteria

Urease is a dinickel enzyme commonly found in numerous organisms that catalyses the hydrolysis of urea into ammonia and carbon dioxide. The microbially induced carbonate precipitation (MICP) process mediated by urease-producing bacteria (UPB) can be used for many applications including, environmental bioremediation, soil improvement, healing of cracks in concrete, and sealing of rock joints. Despite the importance of urease and UPB in various applications, a quantitative, high-throughput assay for the comparison of urease activity in UPB and rapid screening of UPB from diverse environments is lacking. Herein, we reported a quantitative, 96-well plate assay for urease activity based on the Christensen's urea agar test. Using this assay, we compared urease activity of six bacterial strains (E. coli BL21, P. putida KT2440, P. aeruginosa PAO1, S. oneidensis MR-1, S. pasteurii DSM 33, and B. megaterium DSM 319) and showed that S. pasteurii DSM 33 exhibited the highest urease activity. We then applied this assay to quantify the inhibitory effect of calcium on urease activity of S. pasteurii DSM 33. No significant inhibition was observed in the presence of calcium at concentrations below 10 mM, while the urease activity decreased rapidly at higher concentrations. At a concentration higher than 200 mM, calcium completely inhibited urease activity under the tested conditions. We further applied this assay to screen for highly active UPB from a wastewater enrichment and identified a strain of S. pasteurii exhibiting a substantially higher urease activity than DSM 33. Taken together, we established a 96-well plate-based quantitative, high-throughput urease activity assay that can be used for comparison and rapid screening of UPB. As UPB and urease activity are of interest to environmental, civil, and medical researchers and practitioners, we envisage wide applications of the assay reported in this study.

Urease production using corn steep liquor as a low-cost nutrient source by Sporosarcina pasteurii: biocementation and process optimization via artificial intelligence approaches

To commercialize the biocementation through microbial induced carbonate precipitation (MICP), the current study aimed at replacing the costly standard nutrient medium with corn steep liquor (CSL), an inexpensive bio-industrial by-product, on the production of urease enzyme by Sporosarcina pasteurii (PTC 1845). Multiple linear regression (MLR) in linear and quadratic forms, adaptive neuro-fuzzy inference system (ANFIS), and genetic programming (GP) were used for modeling of process based on the experimental data for improving the urease activity (UA). In these models, CSL concentration, urea concentration, nickel supplementation, and incubation time as independent variables and UA as target function were considered. The results of modeling showed that the GP model had the best performance to predict the extent of urease, compared to other ones. The GP model had higher R² as well as lower RSME in comparison with the models derived from ANFIS and MLR. Under the optimum conditions optimized by GP method, the maximum UA value of 3.6 Mm min^-1 was also obtained for 5%v/v CSL concentration, 4.5 g L^-1 urea concentration, 0 μM nickel supplementation, and 60 h incubation time. A good agreement between the outputs of GP model for the optimal UA and experimental result was obtained. Finally, a series of laboratory experiments were undertaken to evaluate the influence of biological cementation on the strengthening behavior of treated soil. The maximum shear stress improvement between bio-treated and untreated samples was 292% under normal stress of 55.5 kN as a result of an increase in interparticle cohesion parameters.

Copper mine tailings valorization using microbial induced calcium carbonate precipitation

The solidification of copper mine tailings was investigated by using the natural biological process known as microbial induced calcium carbonate precipitation (MICP) as a potential method to valorize this waste stream. A submergent method was used to grow bio-columns and the toxicity of copper on Sporosarcina pasteurii (the ureolytic bacteria which drives the MICP process) was investigated. The bio-columns produced from copper mine tailings had a compressive strength of 0.54 MPa, lower than bio-columns produced from beach sand (1.85 MPa). The low porosity of the copper mine tailings limited the depth to which the MICP reaction could successfully occur, resulting in a 1.8 mm ± 0.4 mm crust forming around the outer extremities of the bio-columns. The results demonstrated that the particle size was a key deciding factor and that, as a result, MICP is not suitable for producing 'thick' bio-cemented materials from small particles (<100 μm) such as mine tailings. However, this method could produce thinner material such as bio-tiles or it could even be used to potentially cement together toxic dust particles typically formed on mine tailing heaps.

Complete genome sequence of a tellurate reducing bacteria Sporosarcina sp. Te-1 isolated from Bohai Sea

A previously unreported tellurate reducing capacity was found in a marine bacteria Sporosarcina sp. Te-1, which was isolated from Bohai Sea, China. In this work, the complete genome of strain Te-1 was obtained using hybrid Nanopore/Illumina assemble method. A circular chromosome of 4,297,762 bp with a G + C content of 44.44 mol% was assembled. The genome harbors 4530 predicted protein-encoding genes, 71 tRNA genes, and 9 rRNA genes. Genes involved in tellurate metabolism, urea metabolism and salinity adaption were identified. These metabolic features reveal the genetic basis for the tellurate metabolism in the marine environment, which help us to further understand the marine tellurium biogeochemical cycle.

Native Bacterial Community Convergence in Augmented and Stimulated Ureolytic MICP Biocementation

Microbially induced calcite precipitation is a biomineralization process with numerous civil engineering and ground improvement applications. In replicate soil columns, the efficacy and microbial composition of soil bioaugmented with the ureolytic bacterium Sporosarcina pasteurii were compared to a biostimulation method that enriches native ureolytic soil bacteria in situ under conditions analogous to field implementation. The selective enrichment resulting from sequential stimulation treatments strongly selected for Firmicutes (>97%), with Sporosarcina and Lysinibacillus comprising 60 to 94% of high-throughput 16S rDNA sequences in each suspended community sample. Seven species of the former and two of the latter were present in greater than 10% abundance at different times, demonstrating unexpected within-genus diversity and robustness in the suspended phase of this highly selective environment. Based on longer 16S sequences, it was inferred that augmented S. pasteurii competed poorly with natural bacteria, decreasing to below detection after nine treatments, while the native microbial community was enriched to approximately that present in the stimulated columns. These analyses were corroborated by the observed convergence in bulk ureolytic rates and calcite contents between techniques. However, a 10-fold discrepancy between the observed cell density and an activity-based estimate indicates the attached community, uncharacterized despite efforts, substantially contributes to bulk behavior.

Bioreduction performances and mechanisms of Cr(VI) by Sporosarcina saromensis W5, a novel Cr(VI)-reducing facultative anaerobic bacteria

This study reported a novel facultative anaerobic Cr(VI)-reducing bacteria (Sporosarcina saromensis W5) and investigated its Cr(VI) removal performances and removal mechanisms. The strain W5 was able to grow and reduce Cr(VI) under aerobic and anaerobic environment, and exhibited considerable Cr(VI) reduction capabilities under a wide range of pH (8.0-13.0), temperature (20-40 °C) and initial Cr(VI) concentration (50-800 mg/L). The addition of Cd²⁺ severely inhibited its growth and Cr(VI) removal, while Cu²⁺ and Fe³⁺ significantly enhanced the removal efficiencies. The strain W5 could utilize various electron donors and mediators to accelerate Cr(VI) reduction. Aerobic Cr(VI) reduction mainly occurred in cytoplasm and the final products were soluble organo-Cr(III) complexes. Anaerobic Cr(VI) reduction was located in both cytoplasm and membrane, and the reduction products were soluble organo-Cr(III) complexes and Cr(III) precipitates. The functional groups of hydroxyl, carboxyl and phosphoryl on cell surface participated in the combination with Cr(III). Due to its facultative anaerobic property, S. saromensis W5 offers itself as a promising engineering strain for the bioremediation of Cr(VI)-contaminated areas, especially in hypoxia environments.

A preliminary study of solid-waste coal gangue based biomineralization as eco-friendly underground backfill material: Material preparation and macro-micro analyses

Solid-waste coal gangue (CG) mixed with cement as underground backfilling material is widely applied in coal mines throughout China. However, this material can pollute the environment during its production, preparation, and transportation, which is mainly caused by cement. As a cement-free eco-friendly technology, microbially induced carbonate precipitation (MICP) technology can produce biomineralization products to consolidate loose grains, and the microbial growth environment is adapted to underground temperature with no pollution. To this end, this study gets the Bacillus pasteurii with special resistance by strain domestication, proposes a CG-based bio-mineralized underground backfilling material without using cement, and analyses the characteristics of it from macro- to microscopic perspectives by dissolution test, scanning electron microscopy (SEM), Energy-dispersive spectroscopy (EDS) and X-ray diffraction (XRD). The results indicate that strain domestication leads to B. pasteurii, which can withstand CG leaching solution and 1 M urea simultaneously. This satisfies the basic requirements of CG based mineralized material. Through the circulation perfusion method, the intact CG based biomineralized specimens are obtained. Macroscopically, the bacteria bind gangue grains into a whole with high biomineral content (11.66%). The utilization rate of mineralizing solution is up to 66.82% which makes good use of raw materials. Microscopically, a new crystal formation is observed, and CG particles are consolidated well where the crystals precipitate to fill the pores and bind the particles together. Hence this method has a significant influence on the deposition of biominerals. Meanwhile the biomineralization improves the microstructure considerably and bonds the CG particles as a whole. A comprehensive analysis of the test results shows that, from an environment viewpoint, the preliminary study of new CG based bio-mineralized material is successful.

Transcriptomic Analysis Reveals Common Adaptation Mechanisms Under Different Stresses for Moderately Piezophilic Bacteria

Piezophiles, by the commonly accepted definition, grow faster under high hydrostatic pressure (HHP) than under ambient pressure and are believed to exist only in pressurized environments where life has adapted to HHP during evolution. However, recent findings suggest that piezophiles have developed a common adaptation strategy to cope with multiple types of stresses including HHP. These results raise a question on the ecological niches of piezophiles: are piezophiles restricted to habitats with HHP? In this study, we observed that the bacterial strains Sporosarcina psychrophila DSM 6497 and Lysinibacillus sphaericus LMG 22257, which were isolated from surface environments and then transferred under ambient pressure for half a century, possess moderately piezophilic characteristics with optimal growth pressures of 7 and 20 MPa, respectively. Their tolerance to HHP was further enhanced by MgCl₂ supplementation under the highest tested pressure of 50 MPa. Transcriptomic analysis was performed to compare gene expression with and without MgCl₂ supplementation under 50 MPa for S. psychrophila DSM 6497. Among 4390 genes or transcripts obtained, 915 differentially expressed genes (DEGs) were identified. These DEGs are primarily associated with the antioxidant defense system, intracellular compatible solute accumulation, and membrane lipid biosynthesis, which have been reported to be essential for cells to cope with HHP. These findings indicate no in situ pressure barrier for piezophile isolation, and cells may adopt a common adaptation strategy to cope with different stresses.

Column study of enhanced Cr(Ⅵ) removal and removal mechanisms by Sporosarcina saromensis W5 assisted bio-permeable reactive barrier

In this study, the performances of Sporosarcina saromensis W5 assisted bio-permeable reactive barrier, containing activated carbon (AC) or zero-valent iron (ZVI), were investigated by column experiments in removal of Cr(Ⅵ) from simulated groundwater. The enhanced Cr(Ⅵ) removal performances were observed in biotic columns. Cr(Ⅵ) was first detected in effluent on day 24 and day 85 in Bio-AC and Bio-ZVI columns, respectively whereas it breakthrough only on day 4 and day 15 in AC and ZVI columns. Additionally, Cr(Ⅵ) removal performances induced by biofilm in Bio-QZ columns were promoted with the increase of influent Cr(Ⅵ) concentrations. According to fluorescent images, activated carbon was found to be the best biofilm carrier. Fe⁰ may not be suitable for microbial colonization because biofilm depolymerization occurred on Fe⁰ surface. Moreover, high concentration of Cr(Ⅵ) would lag the evolution of biofilm. Magnetite generating was found on the Fe⁰ surface. X-ray photoelectron spectroscopy (XPS) analysis indicated that the removal mechanism of Cr(Ⅵ) in biotic columns was biotransformation of Cr(Ⅵ) to Cr(Ш) species. Our results may provide a new insight in Cr(Ⅵ) in-situ remediation from groundwater by Bio-PRB system.

Biomineralization of hypersaline produced water using microbially induced calcite precipitation

Reusing produced water (PW) as the subsequent hydraulic fracturing fluid is currently the most economical and dominant practice in the shale oil and gas industry. However, high Ca²⁺ present in PW needs to be removed prior to reuse to minimize the potential for well clogging and formation damage. In this study, the microbially induced calcite precipitation (MICP), as an emerging biomineralization technique mediated by ureolytic bacteria, was employed to remove Ca²⁺ and toxic contaminants from hypersaline PW for the first time. Batch and continuous studies demonstrated the feasibility of MICP for Ca²⁺ removal from hypersaline PW under low urea and nutrient conditions. Throughout the continuous biofiltration operation with biochar as the media, high removal efficiencies of Ca²⁺ (~96%), organic contaminants (~100%), and heavy metals (~100% for As, Cd, Mn and Ni, 92.2% for Ba, 94.2% for Sr) were achieved when PW co-treated with synthetic domestic wastewater (SDW) under the condition of PW:SDW = 1:1 & urea 4 g/L. Metagenomic sequencing analysis showed that a stable ureolytic bacterial consortium (containing Sporosarcina and Arthrobacter at the genus level) was constructed in the continuous biofiltration system under hypersaline conditions, which may play a crucial role during the biomineralization process. Moreover, the combination of the MICP and ammonium recovery could significantly reduce the acute toxicity of PW towards Vibrio fischeri by 72%. This research provides a novel insight into the biomineralization of Ca²⁺ and heavy metals from hypersaline PW through the MICP technique. Considering the low cost and excellent treatment performance, the proposed process has the potential to be used for both hydraulic fracturing reuse and desalination pretreatment on a large scale.

An indigenous bacterium with enhanced performance of microbially-induced Ca-carbonate biomineralization under extreme alkaline conditions for concrete and soil-improvement industries

The advantages of microbial induced carbonate mineralization for soil-stabilization and building-material industries are under extensive investigation. The pH is one of the influential parameters on the desired calcium carbonate mineralization due to the resulting textures of this mineral. Moreover, the decrease in microbial growth under the extreme alkaline environment compatible with the sustainability of concrete has been the bottleneck for an effective application of Microbial Induced Carbonate Precipitation (MICP) in the concrete industry. Microbial consortia have shown more robustness in their resistance to environmental fluctuations than pure cultures. In addition, microorganisms obtained from alkaline environments could facilitate their adaptation to extreme alkalinity. The aim of this study was to obtain urease producing bacteria (UPB) able to maintain a high MICP performance under extremely alkaline conditions compatible with concrete by adapting native microorganisms obtained from extreme environments. The growth performance, urease activity, strength of the generated biocement, and CaCO₃ mineralogy were compared with the best-performer urease-producing bacteria (UPB), S. pasteurii DSMZ 33. The native bacteria presented a similar performance in growth and urease activity than S. pasteurii under extreme alkaline conditions (pH 12.5). However, the generated biocement of native Sporosarcina sp. achieved 461 % more unconfined compressive strength (UCS) and 120 % more CaCO₃ content than the biocement generated by S. pasteurii DSMZ 33. The careful adaptation process performed in this study for native UPB and S. pasteurii DSMZ 33 is an interesting approach with promising and projectable results for future engineering and biotechnological applications. These results have important implications for the design of engineering solutions involving MICP. STATEMENT OF SIGNIFICANCE: A consolidated and strong biocement was generated by a native species obtained from extreme ecosystems in an effort of bioprospecting to enhance the performance of biotechnological solutions for geotechnical applications in the concrete and soil-improvement industries. Biocement generated by the native species was stronger than the generated by one of the best-described biocementation performers. This native species was able to actively growing and do perform microbial-induced-carbonate-mineralization under extreme alkalinity conditions after a careful laboratory adaptation process. The native species presented unique and differentiating traits that gave it a better adaptability and biocementation performance. The same occurs with a priceless microbial diversity inhabiting little explored and unprotected extreme ecosystems. Extreme environments house a fascinating biodiversity with potential value for ecosystem services.

Sugarecane molasse and vinasse added as microbial growth substrates increase calcium carbonate content, surface stability and resistance against wind erosion of desert soils

Wind erosion is one of the main factors of soil degradation and air pollution in arid and semi-arid regions. In this study we evaluated microbial-induced carbonate precipitation (MICP) as an alternative soil conservation method against wind erosion using sugar cane molasse and vinasse as growth substrates in comparison to tryptic soy broth (TSB). The three substrates were applied in laboratory tests with and without addition of MICP cementing solution (1 M urea plus calcium chloride) to two sandy soils differing in calcium carbonate content. The performance of MICP solution inoculated with a cultured urease-producing strain of Sporosarcina pasteurii was compared to that of an autoclaved MICP solution. For control we also performed a blank treatment without substrate, MICP solution and inoculation. In addition to lab tests in which we determined the effects of treatments on soil pH, electrical conductivity (EC), calcium carbonate (CaCO₃) content and surface penetration resistance, we performed wind tunnel experiments to determine soil loss by deflation under different wind velocities. Applying vinasse and molasse strongly increased soil CaCO₃ content and penetration resistance, with and without addition of inoculated or non-inoculated MICP solution. Vinasse generally had stronger effects than molasse, while TSB was less effective, especially on penetration resistance. The addition of MICP solution in most treatments did not enhance but rather decrease the substrate effects. In the treatments with vinasse and molasse, increase in penetration resistance translated into substantially decreased soil loss in the wind tunnel tests, down to around one third of the loss in the blank treatment. In contrast, soil loss substantially increased in the treatments with TSB, probably due to the high input of sodium with this substrate. Our results show that molasse and, even more, vinasse can have a strong soil stabilization effect against wind erosion, which is primarily related to the formation of CaCO₃ content and does not depend on additional amendments. Thus, these substrates have a great potential to be used on their own as environmentally friendly and cost-effective amendments to control wind erosion of bare sandy soils in arid environments.

Bioimmobilization of toxic metals by precipitation of carbonates using Sporosarcina luteola: An in vitro study and application to sulfide-bearing tailings

Metal release from mining wastes is a major environmental problem affecting ecosystems that requires effective, low-cost strategies for prevention and reclamation. The capacity of two strains (UB3 and UB5) of Sporosarcina luteola was investigated to induce the sequestration of metals by precipitation of carbonates in vitro and under microcosm conditions. These strains carry the ureC gene and have high urease activity. Also, they are highly resistant to metals and have the capacity for producing metallophores and arsenophores. SEM, EDX and XRD reveal that the two strains induced precipitation of calcite, vaterite and magnesian calcite as well as several (M²⁺)CO₃ such as hydromagnesite (Mg²⁺), rhodochrosite (Mn²⁺), cerussite (Pb²⁺), otavite (Cd²⁺), strontianite (Sr²⁺), witherite (Ba²⁺) and hydrozincite (Zn²⁺) in vitro. Inoculation of the mixed culture of UB3+UB5 in tailings increased the pH and induced the precipitation of vaterite, calcite and smithsonite enhancing biocementation and reducing pore size and permeability slowing down the oxidation of residual sulfides. Results further demonstrated that the strains of S. luteola immobilize bioavailable toxic elements through the precipitation and coprecipitation of thermodynamically stable (M²⁺)CO₃, Fe-Mn oxyhydroxides and organic chelates.

Effect of simulated acid rain on the stability of calcium carbonate immobilized by microbial carbonate precipitation

The stability of carbonate products resulting from microbially induced carbonate precipitation (MICP) under acid rain is under question. The present study investigated the stability of CaCO₃ precipitated by MICP in soil under simulated acid rain (SAR). Soils were treated continuously for two months with four SAR pH levels: 3.5, 4.5, 5.5, and 7.0. During SAR, biostimulation using nutrient broth containing urea and calcium chloride was adopted to ensure CaCO₃ precipitation. At the end of treatments, soil samples from top and bottom layers were analyzed for bacterial diversity by Illumina MiSeq sequencing, Fourier transform infrared (FTIR) spectroscopy for identification of chemical functional groups related to calcite precipitation, and X-ray diffraction (XRD) for identification of the main crystalline phases. The analysis identified several ureolytic bacteria mainly from Arthrobacter and Sporosarcina genera in SAR-treated soils accelerated with biostimulation, and urease quantities of greater than 300 mg NH₄⁺ per kg soil at all pH levels. The precipitation of CaCO₃ was pronounced and its stability was maintained even when the pH was as low as 3.5. The results obtained in this study are helpful to the scientific community to ensure the immobilization of heavy metals with microbial carbonate precipitation in soil under acid rain.

Application of microbe-induced carbonate precipitation for copper removal from copper-enriched waters: Challenges to future industrial application

Copper contamination in watercourses is a recent issue in countries where mining operations are prevalent. In this study, the application of copper precipitation through microbe-induced carbonate precipitation (MICP) was analyzed using urea hydrolysis by bacteria to evaluate precipitated copper carbonates. This article demonstrates the application of a copper precipitation assay involving Sporosarcina pasteurii (in 0.5 mM Cu²⁺ and 333 mM urea) and analyzes the resultant low removal (10%). The analysis indicates that the low removal was a consequence of Cu²⁺ complexation with the ammonia resulting from the hydrolysis of urea. However, the results indicate that there should be a positive correlation between the initial urea concentration and the bacterial tolerance to copper. This identifies a challenge in the industrial application of the process, wherein a minimum consumption of urea represents an economic advantage. Therefore, it is necessary to design a sequential process that decouples bacterial growth and copper precipitation, thereby decreasing the urea requirement.

Manufacturing bio-bricks using microbial induced calcium carbonate precipitation and human urine

In this study, we investigated the use of a natural process called microbial induced calcium carbonate precipitation (MICP) to 'grow' bio-bricks using the urea present in human urine. We first collected fresh urine and stabilized the urine with calcium hydroxide. This prevented any significant loss of urea which allowed it to then be used for the MICP process. We used Sporosarcina pasteurii bacteria to help drive the MICP process. The bacteria degraded the urea present in the urine to form carbonate ions which then combined with the calcium ions present in the urine solution to produce calcium carbonate. This calcium carbonate was then used as a bio-cement to glue loose sand particles together in the shape of a brick. The maximum compressive strength we obtained for a bio-brick was 2.7 MPa which compares well with conventionally made bricks. We successfully showed that human urine can be used to manufacture bio-bricks thus offering an additional use of human urine.

Controlling the Distribution of Microbially Precipitated Calcium Carbonate in Radial Flow Environments

Bacterially driven reactions such as ureolysis can induce calcium carbonate precipitation, a well-studied process called microbially induced calcium carbonate precipitation (MICP). MICP is of interest in subsurface applications such as sealing leaks around wells. For effective field deployment, it is important to study MICP under radial flow conditions, which are relevant to near-well environments. In this study, a laboratory-scale radial flow reactor of 23 cm diameter, with a 1 mm glass bead monolayer serving as a porous medium, was used to investigate the effects of fluid flow rates and calcium concentrations on the mass and distribution of MICP by the ureolytic bacterium Sporosarcina pasteurii. Experiments were performed at hydraulic residence times of 14, 7, and 3.5 min and calcium to urea molar ratios of 0.5:1, 1:1, and 2:1. The total amount of CaCO₃ precipitated in the reactor increased with increasing residence time and with decreasing Ca²⁺ to urea molar ratios. Increased bacterial attachment and increased CaCO₃ precipitation were observed with distance from the center inlet of the reactor in all experiments. More uniform calcium distribution was achieved at lower flow rates. The relationship between reaction and transport rate (i.e., the Damköhler number) is identified as a useful parameter for the prediction of MICP in radial flow environments.

In Situ Real-Time Study on Dynamics of Microbially Induced Calcium Carbonate Precipitation at a Single-Cell Level

Ureolytic microbially induced calcium carbonate precipitation (MICP) is a promising green technique for addressing a variety of environmental and architectural concerns. However, the dynamics of MICP especially at the microscopic level remains relatively unexplored. In this work, by applying a bacterial tracking technique, the growth dynamics of micrometer-sized calcium carbonate precipitates induced by Sporosarcina pasteurii were studied at a single-cell resolution. The growth of micrometer-scale precipitates and the occurrence and dissolution of many unstable submicrometer calcium carbonate particles were observed in the precipitation process. More interestingly, we observed that micrometer-sized precipitated crystals did not grow on negatively charged cell surfaces nor on other tested polystyrene microspheres with different negatively charged surface modifications, indicating that a negatively charged surface was not a sufficient property for nucleating the growth of precipitates in the MICP process under the conditions used in this study. Our observations imply that the frequently cited model of bacterial cell surfaces as nucleation sites for precipitates during MICP is oversimplified. In addition, additional growth of calcium carbonates was observed on old precipitates collected from previous runs. The presence of bacterial cells was also shown to affect both morphologies and crystalline structures of precipitates, and both calcite and vaterite precipitates were found when cells physically coexisted with precipitates. This study provides new insights into the regulation of MICP through dynamic control of precipitation.

Mineralization and cementing properties of bio-carbonate cement, bio-phosphate cement, and bio-carbonate/phosphate cement: a review

Due to high pollution associated with traditional Portland cement and bio-carbonate cement, a new generation of cementitious material needs to be developed. Bio-barium phosphate, magnesium phosphate, and ferric phosphate are synthesized by bio-mineralization. Firstly, the substrate is hydrolyzed by alkaline phosphatase secreted via phosphate-mineralization microbes, obtaining phosphate ions. Micro- and nano-scale phosphate minerals are prepared by phosphate ions reacting with different types of metal cation. The setting time of bio-BaHPO₄ has a greater effect on the strength of sand columns when a mixing precipitation process is innovatively adopted. The strength of the sand columns increases as bio-BaHPO₄ content (10~50%) increases. The optimum content of bio-BaHPO₄ is 60%. Porosity and permeability of the sand columns decrease as bio-BaHPO₄ content (10~60%) increases. Ammonium and ammonia can effectively be synthesized to magnesium ammonium phosphate by adding K₂HPO₄·3H₂O to Sporosarcina pasteurii liquid. Permeability, porosity, and compressive strength of the sand columns are close to CJ1, CJ1.5, and CJ2 cementation. However, the fixation ammonia ratio of CJ2 is bigger than CJ1 and CJ1.5 (The mixture solutions of Sporosarcina pasteurii and K₂HPO₄·3H₂O (1, 1.5, and 2 mol/L) are named as CJ1, CJ1.5, and CJ2) cementation. The results show that the Sporosarcina pasteurii liquid containing K₂HPO₄·3H₂O (2 mol/L) and the mixture solution of MgCl₂ and urea (3 mol/L) cemented loose sand particles best. Two types of bio-cement are environmentally friendly and can partially or completely replace bio-carbonate cement.

Diversity of Sporosarcina-like Bacterial Strains Obtained from Meter-Scale Augmented and Stimulated Biocementation Experiments

Microbially Induced Calcite Precipitation (MICP) is a biomediated soil cementation process that offers an environmentally conscious alternative to conventional geotechnical soil improvement technologies. This study provides the first comparison of ureolytic bacteria isolated from sand cemented in parallel, meter-scale, MICP experiments using either biostimulation or bioaugmentation approaches, wherein colonies resembling the augmented strain ( Sporosarcina pasteurii ATCC 11859) were interrogated. Over the 13 day experiment, 47 of the 57 isolates collected were strains of Sporosarcina and the diversity of these strains was high, with 20 distinct strains belonging to 5 species identified. Although the S. pasteurii inoculant used for augmentation was recovered immediately after introduction in the augmented specimen, the strain was not recovered after 8 days in either augmented or stimulated soils, suggesting that it competes poorly with indigenous bacteria. Past studies on the physiological properties of S. pasteurii ATCC 11859 suggest that close relatives may have selective advantages under the biogeochemical conditions employed during MICP; however, the extent to which these properties apply to isolates of the current study is unknown. Whole cell urease kinetic properties were investigated for representative isolates and suggest up to 100-fold higher rates of carbonate production when compared to other biomediated processes proposed for MICP.

Study of the Interaction of Eu3+ with Microbiologically Induced Calcium Carbonate Precipitates using TRLFS

The microbial induced biomineralization of calcium carbonate using the ureolytic bacterium Sporosarcina pasteurii in the presence of trivalent europium, a substitute for trivalent actinides, was investigated by time-resolved laser-induced fluorescence spectroscopy (TRLFS) and a variety of physicochemical techniques. Results showed that the bacterial-driven hydrolysis of urea provides favorable conditions for CaCO₃ precipitation and Eu³⁺ uptake due to subsequent increases in NH₄⁺ and pH in the local environment. Precipitate morphologies were characteristic of biogenically formed CaCO₃ and consistent with the respective mineral phase compositions. The formation of vaterite with some calcite was observed after 1 day, calcite with some vaterite after 1 week, and pure calcite after 2 weeks. The presence of organic material associated with the mineral was also identified and quantified. TRLFS was used to track the interaction and speciation of Eu³⁺ as a molecular probe with the mineral as a function of time. Initially, Eu³⁺ is incorporated into the vaterite phase, while during CaCO₃ phase transformation Eu³⁺ speciation changes resulting in several species incorporated in the calcite phase either substituting at the Ca²⁺ site or in a previously unidentified, low-symmetry site. Comparison of the biogenic precipitates to an abiotic sample shows mineral origin can affect Eu³⁺ speciation within the mineral.