Rhodoflexus caldus gen. nov., sp. nov., a new member of the phylum Bacteroidota isolated from a hot spring sediment

A thermophilic bacterium, designated strain SYSU G04325^T, was isolated from a hot spring sediment in Yunnan, China. Polyphasic taxonomic analyses and whole-genome sequencing were used to determine the taxonomic position of the strain. Phylogenetic analysis using 16S rRNA gene sequences indicated that strain SYSU G04325^T shows high sequence similarity to Thermoflexibacter ruber NBRC 16677^T (86.2%). The strain can be differentiated from other species of the family Thermoflexibacteraceae by its distinct phenotypic and genotypic characteristics. Cells of the strain SYSU G04325^T were observed to be aerobic, Gram-stain negative and filamentous. Growth was found to occur optimally at 45 ºC and pH 7.0. In addition, the respiratory quinone was identified as menaquinone-7, while the major fatty acids (> 10%) were identified as iso-C_15:0, iso-C_17:0 and Summed Feature 9 (iso-C_17:1ω9c). The polar lipids detected included phosphatidylethanolamine, three unidentified phospholipids, one unidentified glycolipid, five unidentified aminolipids and four unidentified polar lipids. The G + C content of the genomic DNA was determined to be 47.6% based on the draft genome sequence. On the basis of phenotypic, genotypic and phylogenetic data, strain SYSU G04325^T is concluded to represent a novel species of a novel genus in the family Thermoflexibacteraceae, for which the name Rhodoflexus caldus gen. nov., sp. nov. is proposed. The type strain of Rhodoflexus caldus is SYSU G04325^T (= MCCC 1K06127^T = KCTC 82848^T).

Two new species and two unrecorded species of Limacodidae (Lepidoptera, Zygaenoidea) from Xizang, China

Two new species (Iragoidespeiwangi sp. nov. and Caelestomorphaserratus sp. nov.) and two newly recorded species [Euphlyctinaphaeopasta (Hampson, 1906) and Mummuaerata Solovyev & Witt, 2009] are reported from China. Of these, the genera Caelestomorpha Solovyev & Witt, 2009 and Mummu Solovyev & Witt, 2009 are new to China; the female of the genus Euphlyctina Hering, 1931 is illustrated and described in this paper for the first time.

Diversity and seasonal abundance of Culicoides (Diptera, Ceratopogonidae) in Shizong County, Yunnan Province, China

Culicoides (Diptera, Ceratopogonidae) are small biting midges, some of which are vectors for animal associated arboviruses such as bluetongue virus (BTV) and Akabane virus (AKAV). BTV and AKAV are both pathogenic for livestock, with BTV in particular posing a major threat to domestic ruminants. Ongoing problems with BTV in ruminants in Shizong County of Yunnan Province, China, promoted a year-long investigation of the Culicoides in Shizong to determine relative abundance and seasonality of midges and to attempt to identify species that might be acting as vectors in the area. Culicoides were collected by UV light trap for one night per week for most weeks between May 2020 and May 2021. More than 21,000 specimens consisting of at least 21 species belonging to six subgenera and one unplaced group, including 5 species previously associated with BTV and one associated with AKAV, were collected. Culicoides tainanus dominated most collections throughout the year although C. sumatrae was often the dominant species over summer. Most species were abundant between May and October. These results indicate that C. tainanus, C. jacobsoni and C. oxystoma are the major midge pests of livestock in Shizong and should be considered in any disease investigation.

Malaria from hyperendemicity to elimination along international borders in Yunnan, China during 2003‒2020: a case study

BACKGROUND

Border malaria is one of the most intractable problems hindering malaria elimination worldwide. Movement of both the human population and anopheline mosquitoes infected with Plasmodium spp. can cause cross-border malaria transmission. The Yunnan border area was still hyperendemic for malaria in the early part of this century. The objective of this case study was to analyze the strategies, interventions and impacts of malaria control and elimination in the Yunnan border area.

MAIN TEXT

A total of 10,349 malaria cases and 17.1 per 10,000 person-years of annual parasite incidence (API) were reported in the border area in 2003. Based on natural village-based stratification, integrated interventions, including mass drug administration for radical cures and preventive treatment, clinically presumptive treatment of all febrile patients for malaria and indoor residual spraying or dipping bed nets with insecticides were successfully carried out from 2003 to 2013. The overall API was reduced to 0.6 per 10,000 person-years by 2013, while effective cross-border collaboration interventions dramatically reduced the malaria burden in the neighbouring border areas of Myanmar. From 2014 forward, the comprehensive strategy, including universal coverage of surveillance to detect malaria cases, a rapid response to possible malaria cases and effective border collaboration with neighbouring areas, successfully eliminated malaria and prevented reintroduction of malaria transmission in the Yunnan border area.

CONCLUSIONS

In Yunnan malaria burden has successfully reduced by dynamically accurate stratification and comprehensive interventions; and then the region achieved elimination and prevented reintroduction of malaria transmission through intensive surveillance, rapid response and border collaboration. Other border areas should perform their own intervention trials to develop their own effective strategy.

Ethnobotanical survey of antifertility medicinal plants in Dali District, Yunnan Province, China

In recent years, contraceptive medication has been widely used for birth control. It is worth noting that contraceptive medication from botanical source has great potential for clinical use. Yunnan is the province with the most species of plants in China and is known as the "plant kingdom". This study aims to archive herbal remedies traditionally used as antifertility remedies in Dali District, Yunnan Province, P. R. China. The survey was conducted from February 2011 to September 2016 in the population distributed in Dali and the surrounding counties. The data were collected from three groups of practitioners within the study area: therapists using traditional medicines (n = 104), aboriginal families (n = 37), and herbalists in commercial stalls (n = 12), and a total number of 117 plant species were recorded. Among the 117 plant species, 104 of which have been authenticated by a plant taxonomist from the Dali Herbarium. These plants were classified into 98 genera and 54 families, including Leguminosae (12 species), Liliaceae (7 species), Cucurbitaceae, Rosaceae and Rutaceae (5 species, respectively), Malvaceae, Compositae and Euphorbiaceae (4 species, respectively). Our data provides an in-depth delineation of the contraceptive plants used in Dali, which serve as valuable information for the practitioners of traditional Chinese medicine in contraceptive use. In addition, these data also hint that plants from different genus contain contraceptive components, which should be avoided by pregnant women. Future studies are required to identify the active contraceptive components, assess the toxicology, and elucidate the pharmacological mechanism of action.

Distribution and health-ecological risk assessment of heavy metals: an endemic disease case study in southwestern China

This research focuses on the health risks caused by heavy metal (HM) environmental pollution. Soil, water, corn, rice, and patients' hair samples from Daping Village, Yunnan Province, China, were analyzed for seven selected HMs. Geoaccumulation index (I_geo), pollution indexes (PI), and the Nemerow integrated pollution index (PN) were used to evaluate pollution levels. We employed principal component analysis (PCA), correlation analysis (CA), and spatial distribution to identify the source and distribution characteristics of HMs in soil. Health risks of HMs and exposure pathways were accessed by calculating the hazard quotient (HQ) and hazard index (HI). The I_geo, PI, and PN results show that cadmium (Cd) and arsenic (As) pollution is severe in soil, while other pollution is relatively little. PCA, CA, and spatial distribution show that HMs may be derived from black shale weathering and enrichment. Residents' drinking water is relatively safe. Arsenic is the element most threatening to local residents (HI = 3.8). Soil (HI = 3.55) ingestion and plant (HI = 1.67) ingestion are the primary exposure pathways to HMs. This unusual disease may be caused by children's relatively low immunity and long-term exposure to As. We must enhance the protection of children and encourage avoiding soil contact as much as possible. Our results highlight the importance of investigating HM pollution from geological sources and blocking potential exposure pathways.

One new species of Fannia (Diptera, Fanniidae) from Yunnan, China with a key to the Fanniafuscinata-group in China

Background

The Fannidae includes over 400 described species, mainly known from the Holarctic Region. The number of species in the Oriental Region are underestimated. The Fanniafuscinata-group was established by Wang et al. in 2011, consisting of nine species at present.

New information

A new species of the genus Fannia (Diptera, Fanniidae) is described from Yunnan, part of the Oriental Region in China, namely Fanniamenglaensis sp. nov. The detailed description, photographs and drawings of adults and male terminalia of F.menglaensis sp. nov. are provided. All specimens are preserved in the Museum of Beijing Forestry University.

Genetic Characterization of a Novel HIV-1 Second-Generation Recombinant Form Originating from CRF86_BC and a Unique Recombinant Form in Yunnan, China

Yunnan is the first place where human immunodeficiency virus type 1 (HIV-1) became prevalent in China, and it is also the place with the most complicated HIV-1 genetic diversity in China. On October 23, 2019, a patient newly diagnosed with acquired immunodeficiency syndrome from a hospital in Baoshan, Yunnan, was recruited for genetic analysis. Near full-length genome of HIV-1 was amplified from the plasma sample. Phylogenetic analysis revealed that this sequence (BS6F24) has a close relationship with CRF86_BC and a unique recombinant form (URF) (KY406739), which was formed by recombination of subtypes B and C. Bootscan analysis confirmed that the first part (HXB2:1022-5832) and last part (HXB2:5833-9120) genomes of BS6F24 had the same recombinant structures as KY406739 and CRF86_BC, respectively. A second-generation recombinant form that originated from CRF86_BC and a URF were reported for the first time. This indicates the need for continuous monitoring of the genetic diversity of HIV-1 in Yunnan, China.

Assessing temporal dynamics of predation and effectiveness of caterpillar visual defense using sawfly larval color and resting posture as a model

Caterpillars (Lepidoptera and Symphyta larvae) employ diverse visual defensive tactics, and effectiveness of such tactics may be highly dynamic across time due to seasonal changes in the predator assemblages and their preferences. However, this has rarely been studied especially in tropical regions. Here we assessed temporal changes in the defensive value of caterpillar color and shape, using six types of plasticine dummy caterpillars: three colors (green, black, and white) × two shapes (curled and straight). These dummy caterpillars were deployed five times over different seasons in tropical forests of Xishuangbanna (China) and, as a comparison, twice in a temperate forest of Hirosaki (Japan). The colors and shapes of dummy caterpillars simulate visual traits of black sawfly larvae which take the curled resting posture in tropical rainforests of Xishuangbanna, apparently masquerading excrements commonly found on plants, while in Hirosaki there is no black-curled sawfly larvae and few excrements on plants. We found no significant effects of caterpillar colors or shapes on predation in Hirosaki. In contrast, black and curled caterpillars received significantly lower predation by birds in Xishuangbanna constantly across time. However, we were unable to provide evidence that the black-curled sawfly larvae are masquerading as excrements. Shapes of the dummy caterpillars also affected the predation by ants and parasitoid wasps at certain times. This is the first report on ecological function of the curled posture of sawfly larvae, and we demonstrated the importance to assess the temporal dynamics of predation and effectiveness of defensive tactics in tropical forests.

The largest theropod track site in Yunnan, China: a footprint assemblage from the Lower Jurassic Fengjiahe Formation

Yunnan Province is famous for its diversified Lufeng vertebrate faunas containing many saurischian dinosaur remains. In addition to the body fossil record, dinosaur ichnofossils have also been discovered in Yunnan, and the number of published track sites is on the rise. We report a theropod assemblage from the Lower Jurassic Fengjiahe Formation in Xiyang, central Yunnan. It is the third report and description of dinosaur footprints from the Fengjiahe Formation, and this new track site is the largest in number of footprints for theropods in Yunnan. Over one hundred footprints are preserved on different layers of a claystone-dominated succession close to the Lower-Middle Jurassic boundary. The track area is referred to as a lacustrine shallow-water paleoenvironment. Tracks vary in size, morphology, and preservation. All are tridactyl and digitigrade, and some are identified as undertracks. The best preserved footprints were divided into three morphotypes: morphotype A (>8 cm–<21 cm) resembling Grallator; morphotype B (>27 cm–<30 cm) identified as Kayentapus xiaohebaensis; and morphotype C, an isolated footprint (39 cm) referred to the ichnogenus Kayentapus. Although footprint shape is influenced by many factors, biotic or abiotic, morphological differences among tracks such as size, divarication angles and proportions imply that at least three different kinds of theropods were visiting this site frequently. Theropod body fossils found in the surrounding area, such as Sinosaurus, turn out to be similar in body size to the projected size estimated from footprint lengths at the track site. In Yunnan, discoveries of theropod body fossils are rare. In that respect, the track record is a useful diversity indicator which can help to encompass theropod diversity patterns. Broadly speaking, large predators (five meters long or more) were uncommon in Early Jurassic ecosystems. Accordingly, large tracks are scarce on the track site, but not absent. Trackmakers of all sizes presumably coexisted in this tropical Jurassic ecosystem, and were regularly drawn to the track site in search of water or food resources.

Three new species of Liparis s.l. (Orchidaceae: Malaxideae) from Southwest China based on morphological characters and phylogenetic evidence

Liparis aureolabella and L. mengziensis, two new species from the karst region of southwestern China, and L. bingzhongluoensis, a new species from montane region in Yunnan, are described and illustrated. L. aureolabella is easily distinguished from its relatives by having abaxially purple leave with purple reticulate veins prominent adaxially, a lip auriculate at base, and falcate-lanceolate pollinia. Liparis mengziensis is closely related to L. petiolata and L. auriculata, but differs from them by having an ovate to broadly ovate leaf, purple lip and apex connate along the margins. Liparis bingzhongluoensis is similar to Liparis nanlingensis, but the new species is characterized by having a lip with two transparent ridges on its disc, longitudinally concave basal callus and triangular column wings. Phylogenetic analyses based on nuclear ribosomal ITS and plastid matK sequences showed that L. aureolabella and L. mengziensis are nested with L. petiolata or L. auriculata in a monophyletic clade. L. bingzhongluoensis is sister to a clade formed by L. nanlingensis, L. tsii, L. sasakii and L. krameri. Moreover, morphological comparisons strongly support that the three species as separated species newly to science.

Consistency of spatial dynamics of HIV-1 and HCV among HIV-1/HCV coinfected drug users in China

BACKGROUND

As the transmission routes of human immunodeficiency virus type 1 (HIV-1) and hepatitis C virus (HCV) are similar, previous studies based on separate research on HIV-1 and HCV assumed a similar transmission pattern. However, few studies have focused on the possible correlation of the spatial dynamics of HIV-1 and HCV among HIV-1/HCV coinfected patients.

METHODS

A total of 310 HIV-1/HCV coinfected drug users were recruited in Yingjiang and Kaiyuan prefectures, Yunnan Province, China. HIV-1 env, p17, pol and HCV C/E2, NS5B fragments were amplified and sequenced from serum samples. The genetic characteristics and spatial dynamics of HIV-1 and HCV were explored by phylogenetic, bootscanning, and phylogeographic analyses.

RESULTS

Among HIV-1/HCV coinfected drug users, eight HCV subtypes (1a, 1b, 3a, 3b, 6a, 6n, 6v, and 6u) and two HIV-1 subtypes (subtype B and subtype C), three HIV-1 circulating recombinant forms (CRF01_AE, CRF07_BC and CRF08_BC), and four unique recombinant forms (URF_BC, URF_01B, URF_01C and URF_01BC) were identified. HCV subtype 3b was the most predominant subtype in both Yingjiang and Kaiyuan prefectures. The dominant circulating HIV-1 subtypes for drug users among the two areas were CRF08_BC and URF_BC. Maximum clade credibility trees revealed that both HIV-1 and HCV were transmitted from Yingjiang to Kaiyuan.

CONCLUSIONS

The spatial dynamics of HIV-1 and HCV among HIV-1/HCV coinfected drug users seem to have high consistency, providing theoretical evidence for the prevention of HIV-1 and HCV simultaneously.

Yuxiensis granularis gen. et sp. nov., a Novel Quellkörper-Bearing Fungal Taxon Added to Scortechiniaceae and Inclusion of Parasympodiellaceae in Coronophorales Based on Phylogenetic Evidence

An undetermined saprobic fungal taxon from Yunnan (China) is revealed as a new genus in Scortechiniaceae (Coronophorales). The novel taxon, Yuxiensis, is characterized by immersed to erumpent, semi-globose ascomata, which are not surrounded by any tomentum or conspicuous subiculum, a subcylindrical quellkörper in the centrum, clavate asci with long pedicels and allantoid hyaline ascospores with granular contents. Maximum likelihood and Bayesian posterior probability analyses based on LSU, ITS, tef1 and rpb2 sequence data depict a close phylogenetic relationship of the new genus to Pseudocatenomycopsis, hence, confirming its placement in Scortechiniaceae. Parasympodiellaceae, thus far belonging to Parasympodiellales, is transferred to Coronophorales based on multi-gene phylogenetic evidence. Additionally, the incertae sedis monotypic genus Arthrocristula is treated as a synonym of Parasympodiella, with Arthrocristula hyphenata recombined as Parasympodiella hyphenata comb. nov., as the type strain of Arthrocristula hyphenata clusters inside the Parasympodiellaceae clade along with other Parasympodiella taxa.

The genus Dettopsomyia Lamb, 1914 (Diptera, Drosophilidae) from southern China

The genus Dettopsomyia was established by Lamb in 1914 for a single species, De.formosa described therein. It contains 13 known species recorded from the Old World (the Oriental, Australasian, Palearctic and Afrotropical regions). In the present paper, five new species discovered from southern China are described as members of Dettopsomyia: De.acutipenis Wang & Gao, sp. nov., De.serripenis Wang & Gao, sp. nov., De.discontinua Wang & Gao, sp. nov., De.camelonota Wang, Li & Gao, sp. nov. and De.paranigrovittata Wang, Li & Gao, sp. nov. The new species were delimitated, based on not only morphological characters but also molecular data.

in Yunnan, PR China

Orbiviruses are arboviruses with 10 double-stranded linear RNA segments, and some have been identified as pathogens of dramatic epizootics in both wild and domestic ruminants. Tibet orbivirus (TIBOV) is a new orbivirus isolated from hematophagous insects in recent decades, and, currently, most of the strains have been isolated from insects in PR China, except for two from Japan. In this study, we isolated a novel reassortment TIBOV strain, YN15-283-01, from Culicoides spp. To identify and understand more characteristics of YN15-283-01, electrophoresis profiles of the viral genome, electron microscopic observations, plaque assays, growth curves in various cell lines, and bioinformatic analysis were conducted. The results indicated that YN15-283-01 replicated efficiently in mosquito cells, rodent cells and several primate cells. Furthermore, the maximum likelihood phylogenetic trees and simplot analysis of the 10 segments indicated that YN15-283-01 is a natural reassortment isolate that had emerged mainly from XZ0906 and SX-2017a.

Infestation and Related Ecology of Chigger Mites on the Asian House Rat (Rattus tanezumi) in Yunnan Province, Southwest China

This paper is to illustrate the infestation and related ecological characteristics of chigger mites on the Asian house rat (Rattus tanezumi). A total of 17,221 chigger mites were collected from 2,761 R. tanezumi rats, and then identified as 131 species and 19 genera in 2 families. Leptotrombidium deliense, the most powerful vector of scrub typhus in China, was the first major dominant species on R. tanezumi. All the dominant mite species were of an aggregated distribution among different individuals of R. tanezumi. The species composition and infestations of chiggers on R. tanezumi varied along different geographical regions, habitats and altitudes. The species-abundance distribution of the chigger mite community was successfully fitted and the theoretical curve equation was Ŝ (R)=37e^−(0.28R)². The total chigger species on R. tanezumi were estimated to be 199 species or 234 species, and this further suggested that R. tanezumi has a great potential to harbor abundant species of chigger mites. The results of the species-plot relationship indicated that the chigger mite community on R. tanezumi in Yunnan was an uneven community with very high heterogeneity. Wide geographical regions with large host samples are recommended in the investigations of chigger mites.

Five Novel Taxa from Freshwater Habitats and New Taxonomic Insights of Pleurotheciales and Savoryellomycetidae

Pleurotheciales is the largest order in Savoryellomycetidae with a large proportion of species known from freshwater habitats. In order to investigate the phylogenetic relationships of taxa within Pleurotheciales and contribute to their diversity, submerged wood was collected from freshwater habitats in China (Yunnan Province) and Thailand. Two dematiaceous, sporodochial hyphomycetes and one annulatascales-like ascomycete with unusual morphology as compared to extant ones were discovered. They were subjected to DNA-based phylogenetic analyses and the results revealed three distinct lineages in Savoryellomycetidae. This morpho-phylo taxonomic study supports the establishment of five novel taxa including two novel genera, Obliquifusoideum and Saprodesmium, and three novel species, Coleodictyospora muriformis, Obliquifusoideum guttulatum and Saprodesmium dematiosporum. Coleodictyospora muriformis and S. dematiosporum are placed in Pleurotheciales, while O. guttulatum is referred to Savoryellomycetidae genera incertae sedis. The phylogenetic relationships are also presented for Coleodictyospora and Pseudocoleodictyospora, which raises an intriguing taxonomic issue. These two genera are positioned in two different classes, viz Sordariomycetes and Dothideomycetes, although they are quite similar except for the presence of a conidial sheath. This study expands our knowledge of the fungal diversity of freshwater fungi, and also indicates that Pleurotheciales species are mostly found in freshwater habitats.

Molecular and morphological evidence for a new species of Leptopus (Phyllanthaceae) from Southeast Yunnan, China

Leptopus malipoensis, a new species of Phyllanthaceae from Southeast Yunnan Province, China, is described. The phylogenetic position of the new species within the genus Leptopus was analyzed based on nuclear ribosomal Internal Transcribed Spacer (nrITS) and plastid matK sequence data. The results show that L. malipoensis is highly supported to be the sister of L. fangdingianus (P. T. Li) Voronts. & Petra Hoff., a species endemic to western Guangxi Province, China. Morphologically, the new species can be distinguished from all known congeneric taxa by its long and slim branches usually pendulous or procumbent, some of its leaf laminas up to 15 cm long and 7 cm wide. It further differs from its sister species by its hirsute stems, leaves and pedicel of female flowers, longer pedicel of male flowers, 3-locular ovary and three styles. A key to all 10 accepted Leptopus species is provided.

Malaria: elimination tale from Yunnan Province of China and new challenges for reintroduction

Background

Eradication of infectious disease is the sanctified public health and sustainable development goal around the world.

Main body

Three antimalarial barriers were developed to control imported malarial cases, and an effective surveillance strategy known as the “1–3–7 approach” was developed to eliminate malaria from the Chinese population. From 2011 to 2019, 5254 confirmed malaria cases were reported and treated in Yunnan Province, China. Among them, 4566 cases were imported from other countries, and 688 cases were indigenous from 2011 to 2016. Since 2017, no new local malarial case has been reported in China. Thus, malaria has been completely eliminated in Yunnan Province. However, malaria is detected in overseas travellers on a regular basis, such as visitors from neighbouring Myanmar.

Conclusion

Hence, the strategies should be further strengthened to maintain a robust public health infrastructure for disease surveillance and vector control programs in border areas. Such programs should be supported technically and financially by the government to avert the possibility of a malarial resurgence in Yunnan Province.

Graphic Abstract

Supplementary Information

The online version contains supplementary material available at 10.1186/s40249-021-00866-9.

Comparative analyses on epidemiological characteristics of dengue fever in Guangdong and Yunnan, China, 2004-2018

Background

In China, Guangdong and Yunnan are the two most dengue-affected provinces. This study aimed to compare the epidemiological characteristics of dengue fever in Guangdong and Yunnan during 2004–2018.

Methods

Descriptive analyses were used to explore the temporal, spatial, and demographic distribution of dengue fever.

Results

Of the 73,761 dengue cases reported in mainland China during 2004–2018, 93.7% indigenous and 65.9% imported cases occurred in Guangdong and Yunnan, respectively. A total of 55,970 and 5938 indigenous cases occurred in 108 Guangdong and 8 Yunnan counties, respectively during 2004–2018. Whereas 1146 and 3050 imported cases occurred in 84 Guangdong and 72 Yunnan counties, respectively during 2004–2018. Guangdong had a much higher average yearly indigenous incidence rate (3.65 (1/100000) vs 0.86 (1/100000)), but a much lower average yearly imported incidence rate (0.07 (1/100000) vs 0.44(1/100000)) compared with Yunnan in 2004–2018. Furthermore, dengue fever occurred more widely in space and more frequently in time in Guangdong. Guangdong and Yunnan had similar seasonal characteristics for dengue fever, but Guangdong had a longer peak period. Most dengue cases were clustered in the south-western border of Yunnan and the Pearl River Delta region in Guangdong. Most of the imported cases (93.9%) in Guangdong and Yunnan were from 9 Southeast Asian countries. Thailand, Cambodia, and Malaysia imported mainly into Guangdong while Myanmar and Laos imported into Yunnan. There was a strong male predominance among imported cases and an almost equal gender distribution among indigenous cases. Most dengue cases occurred in individuals aged 21–50 years, accounting for 57.3% (Guangdong) vs. 62.8% (Yunnan) of indigenous and 83.2% (Guangdong) vs. 62.6% (Yunnan) of imported cases. The associated major occupations (house worker or unemployed, retiree, and businessman, for indigenous cases; and businessman, for imported cases), were similar. However, farmers accounted for a larger proportion of dengue cases in Yunnan.

Conclusions

Identifying the different epidemiological characteristics of dengue fever in Guangdong and Yunnan can be helpful to formulate targeted, strategic plans, and implement effective public health prevention measures in China.

Genetic Characteristics of Three Unique Recombinant Forms of HIV-1 in Yunnan, China

To explore the molecular epidemiological status of human immunodeficiency virus type 1 (HIV-1) in Yunnan, China, three HIV-1 near full-length genomes were amplified and sequenced from plasma samples that were collected from Burmese patients newly diagnosed with HIV-1 in Dehong Prefecture in Yunnan Province in 2017. Phylogenetic and bootscanning analyses revealed that all the sequences might be HIV-1 second-generation recombinant forms of circulating recombinant forms (CRF07_BC and CRF83_cpx) and unique recombinant forms. One of the sequences contained six CRF01_AE fragments, five subtype C fragments, and two subtype B fragments, which were separated by 12 breakpoints. These results revealed that the second-generation recombination of HIV-1 within different strains is still ongoing in Dehong, China. Systematic surveys and immediate interventions are urgently needed to prevent the formation of increasingly complex HIV-1 recombinant forms.

New records of two lycaenid butterfly species (Lepidoptera: Lycaenidae) in China, with the description of a new subspecies

Background

The family Lycaenidae is the second-largest group of butterflies which contains about one third of the known species of Papilionoidea. The genera Tajuria Moore, [1881] and Drupadia Moore, 1884 are both mainly found in the Oriental and Australian realms. In a very recent expedition to south-west China in Xishuangbanna (Yunnan Province), specimens of T.sekii Saito, 2005 and D.scaeva (Hewitson, 1869) were collected for the first time, a new subspecies of the former: T.sekiisisyphus ssp. nov., is described and illustrated and the latter species comprises the first record of the genus Drupadia in China.

New information

A new subspecies of T.sekii Saito, 2005, T.sekiisisyphus ssp. nov., is described and illustrated. The species T.sekii Saito, 2005 and D.scaeva (Hewitson, 1869) are first recorded in China and the latter comprises the first record of the genus Drupadia in China. Relevant details are presented for the species.

Assessing Earthquake Forecast Performance Based on b Value in Yunnan Province, China

Many studies have shown that b values tend to decrease prior to large earthquakes. To evaluate the forecast information in b value variations, we conduct a systematic assessment in Yunnan Province, China, where the seismicity is intense and moderate-large earthquakes occur frequently. The catalog in the past two decades is divided into four time periods (January 2000-December 2004, January 2005-December 2009, January 2010-December 2014, and January 2015-December 2019). The spatial b values are calculated for each 5-year span and then are used to forecast moderate-large earthquakes (M ≥ 5.0) in the subsequent period. As the fault systems in Yunnan Province are complex, to avoid possible biases in b value computation caused by different faulting regimes when using the grid search, the hierarchical space-time point-process models (HIST-PPM) proposed by Ogata are utilized to estimate spatial b values in this study. The forecast performance is tested by Molchan error diagram (MED) and the efficiency is quantified by probability gain (PG) and probability difference (PD). It is found that moderate-large earthquakes are more likely to occur in low b regions. The MED analysis shows that there is considerable precursory information in spatial b values and the forecast efficiency increases with magnitude in the Yunnan Province. These results suggest that the b value might be useful in middle- and long-term earthquake forecasts in the study area.

[Cancer Screening Program in Urban Kunming of Yunnan: Evaluation of Lung Cancer Risk Assessment and Screening]

BACKGROUND

Lung cancer is the most common neoplasmas with a poor prognosis and a low 5-year survival rate. Early screening is an important measure for the prevention and treatment of lung cancer. At present, different countries have issued corresponding lung cancer screening guidelines, but China still lacks guidelines based on Chinese population research. Therefore, the National Cancer Center launched a Multi-center Cancer Screening Program in Urban China. This study analyzed the evaluation of lung cancer risk assessment model and screening effect in urban China of Yunnan, so as to explore the evaluation model of high-risk lung cancer population suitable for China's national conditions and develop lung cancer screening guidelines for Chinese.

METHODS

A questionnaire survey and lung cancer risk assessment were conducted on 165,337 people in 36 street offices in 4 main urban areas of Kunming, Yunnan Province, using cluster sampling method from January 2015 to December 2019. People with high-risk of lung cancer conducted low-dose computed tomography (LDCT) screening of chest. What's more, all participants were followed up by active or passive follow-up.

RESULTS

There were 264 patients were diagnosed lung cancer by pathology, and the overall incidence of lung cancer was 0.16% (264/165,337). The high-risk group (0.31%, 116/37,914) was higher than the non-high-risk group (0.12%, 148/127,423), and the difference was statistically significant (P<0.001). The incidence of lung cancer in the high-risk group was higher than the non-high-risk group among the male, female, and lower 50-year-old or more than 50-year-old subgroups, with statistical differences (P<0.001), but there was no statistical difference in the group without LDCT screening (P=0.73). The sensitivity of the lung cancer high-risk population assessment model was 43.94% (116/264) and the specificity was 77.10% (127,275/165,073). The early diagnosis rate of the screening group was 72.97% (54/74), which was significantly higher than that of the non-screening group [28.48% (43/151)].

CONCLUSIONS

The lung cancer high-risk population assessment model of National Key Public Health Program: Cancer Screening Program in Urban China can detect high-risk populations and improve the early diagnosis rate of lung cancer effectively.

The third species of the genus Pachypaederus Fagel, 1958 (Coleoptera, Staphylinidae, Paederinae) from the Oriental region

A new species of Pachypaederus Fagel, 1958, P.kongshuhensis Li, sp. nov., is described from Yunnan Province, China. This species represents the third member of the genus from the Oriental region. Color plates of the habitus, labrum, mandibles, sternites VII-IX of the male and female, as well as the aedeagal structures are provided. A key to Oriental Pachypaederus species is provided.

Meiogyne oligocarpa (Annonaceae), a new species from Yunnan, China

Meiogyne oligocarpa sp. nov. (Annonaceae) is described from Yunnan Province in Southwest China. It is easily distinguished from all previously described Meiogyne species by the possession of up to four carpels per flower, its bilobed, sparsely hairy stigma, biseriate ovules and cylindrical monocarps with a beaked apex. A phylogenetic analysis was conducted to confirm the placement of this new species within Meiogyne. Meiogyne oligocarpa represents the second species of Meiogyne in China: a key to the species of Meiogyne in China is provided to distinguish it from Meiogyne hainanensis. Paraffin sectioning was undertaken to study the anatomy of the corrugations on the inner petals of Meiogyne oligocarpa to verify whether they are glandular.

Cultivating China's Cinchona: The Local Developmental State, Global Botanic Networks and Cinchona Cultivation in Yunnan, 1930s-1940s

This article reconstructs the history of China's first successful cinchona cultivation programme in Hekou, Yunnan province from the 1930s to 1940s during the Nationalist era (1928-49). I argue that the Hekou programme was initiated by the Yunnan 'local developmental state' to control endemic malaria and achieve quinine self-sufficiency. It was expanded during the Sino-Japanese War (1937-45) as part of the national defence project in order to develop Yunnan's malaria-ridden southwest frontier to provide more resources for the war, as well as to solve broader wartime epidemic crises in southwest China. A closer examination also indicates that the development of the Hekou programme was closely intertwined with global networks of cinchona cultivation and international politics.

Yunnanilus chuanheensis, a new loach species (Cypriniformes: Nemacheilidae) from the upper Lixianjiang River in Yunnan, China

A new loach species (Cypriniformes: Nemacheilidae: Yunnanilini), Yunnanilus chuanheensissp. nov., was caught from Chuanhe in the upper reaches of the Lixianjiang River, a tributary of the Red River in Nanjian County, Yunnan Province, China. This species is a member of the traditional Y. pleurotaenia species group based on the presence of a lateral line and cephalic lateral-line canals. It can be distinguished from other species in the Y. pleurotaenia species group by the following characters: lips without papillae, anterior and posterior nostrils separated, whole body scaled, eye diameter smaller than interorbital width, outer gill raker absent on first gill arch, eye diameter greater than 18% of head length, 10–11 inner gill rakers on first gill arch, and lateral line not extending to vertical through dorsal fin insertion. To the best of our knowledge, this is the first Yunnanilus species recorded from the Red River drainage.

Genetic diversity of hepatitis B virus in Yunnan, China: identification of novel subgenotype C17, an intergenotypic B/I recombinant, and B/C recombinants

Yunnan is considered to be a geographical hotspot for the introduction, mutation and recombination of several viruses in China. However, there are limited data regarding the genotypic profiles of hepatitis B virus (HBV) in this region. In this study, we characterized 206 HBV strains isolated from chronic hepatitis B patients in Yunnan, China. Initial genotyping based on 1.5 kb sequences revealed that genotype C was the most prevalent at 52.4 % (108/206), followed by genotype B at 30.6 % (63/206) and unclassified genotypes at 17.0 % (35/206). To characterize the 35 unclassified strains, 32 complete HBV genomes were amplified and analysed; 17 isolates were classified within a known subgenotype, 8 were classified as B/C recombinants, 1 was classified as a B/I recombinant and 6 constituted a potentially novel C subgenotype that we designated as C17, based on the characteristics of a monophyletic cluster, >4 % genetic distances, no significant evidence of recombination and no epidemiological link among individuals. Thus, multiple subgenotypes - namely B1, B2, B4, C1, C2, C3, C4, C8 and C17 - and two distinct intergenotypic recombinants exist in Yunnan, China, highlighting the complex and diverse distribution pattern of HBV genotypic profiles.

Contribution to the taxonomy of the genus Lycodon H. Boie in Fitzinger, 1827 (Reptilia: Squamata: Colubridae) in China, with description of two new species and resurrection and elevation of Dinodon septentrionale chapaense Angel, Bourret, 1933

While considerable progress has been made in the taxonomic studies of the genus Lycodon in Asia, questions remain to be clarified regarding the taxonomy of certain groups, particularly those containing species in China. Not only do many regions in China remain overlooked by herpetologists, resulting in the possibility of undiscovered new species, but the surveyed areas also have suspicious records of recognized congeners that require taxonomic confirmations. Combining both morphological and genetic data, we tackle these outstanding issues in the taxonomy of Lycodon in China. In particular, we discover two new species of Lycodon: one from the previously neglected hot-dry valley in the northern Hengduan Mountain Region close to Tibet, and another recluse and cryptic species from the L. fasciatus complex in the downtown park of a major city in southern Sichuan Province. Additionally, we clarify the distribution of L. septentrionalis in China and resurrect and elevate its junior synonym subspecies, Dinodon septentrionale chapaense, as a full, valid species, and we synonymize the recently described L. namdongensis to the resurrected L. chapaensiscomb. nov.. Lycodon chapaensiscomb. nov. thus represents a new national record of reptilian fauna of China. Lastly, based on literature review, we also correct some of the erroneous records of L. fasciatus and L. ruhstrati in China, point out remaining taxonomic issues of the genus for future research, and update the dichotomous key and distribution of the 20 species of Lycodon currently recorded from China.

Insight into the Systematics of Microfungi Colonizing Dead Woody Twigs of Dodonaea viscosa in Honghe (China)

Members of Dodonaea are broadly distributed across subtropical and tropical areas of southwest and southern China. This host provides multiple substrates that can be richly colonized by numerous undescribed fungal species. There is a severe lack of microfungal studies on Dodonaea in China, and consequently, the diversity, phylogeny and taxonomy of these microorganisms are all largely unknown. This paper presents two new genera and four new species in three orders of Dothideomycetes gathered from dead twigs of Dodonaea viscosa in Honghe, China. All new collections were made within a selected area in Honghe from a single Dodonaea sp. This suggests high fungal diversity in the region and the existence of numerous species awaiting discovery. Multiple gene sequences (non-translated loci and protein-coding regions) were analysed with maximum likelihood and Bayesian analyses. Results from the phylogenetic analyses supported placing Haniomyces dodonaeae gen. et sp. in the Teratosphaeriaceae family. Analysis of Rhytidhysteron sequences resulted in Rhytidhysteron hongheense sp. nov., while analysed Lophiostomataceae sequences revealed Lophiomurispora hongheensis gen. et sp. nov. Finally, phylogeny based on a combined dataset of pyrenochaeta-like sequences demonstrates strong statistical support for placing Quixadomyceshongheensis sp. nov. in Parapyrenochaetaceae. Morphological and updated phylogenetic circumscriptions of the new discoveries are also discussed.

Analysis of the etiologies of female infertility in Yunnan minority areas

Background

The present study aims to provide a comparative analysis of the etiologies of female infertility between Dehong, on the Yunnan Frontier, and Kunming.

Methods

A retrospective study, which included 941 infertile females in Kunming who were treated in the First People’s Hospital of Yunnan Province and infertile females who were treated in the local hospital in Dehong from January 2016 to November 2018, was conducted. A comparative analysis of the etiologies of infertility in the two regions was then carried out.

Results

In patients with primary infertility, ovulation disorder (15.03%) was the main cause of infertility in Kunming, and pelvic inflammatory disease (25.59%) was the main cause in Dehong. With regard to secondary infertility, although pelvic inflammatory disease was the main cause of infertility in both regions, the incidence of intrauterine adhesions in Kunming was significantly higher than in Dehong.

Conclusions

The etiology of infertility showed different epidemiological characteristics depending on the region, hence individualized treatment should be given accordingly

Rediscovery of Pogostemon dielsianus (Lamiaceae, Lamioideae), a rare endemic species from southwestern China, after one century

Pogostemon dielsianus (Lamiaceae) was described in 1913 based on a single gathering from northwestern Yunnan of China collected in 1905, and thereafter no further collections were observed until 2019. We rediscovered the rare endemic species in Lushui County, Yunnan. Molecular phylogenetic analyses based on four cpDNA markers (rbcL, rps16, psbA-trnH, and trnL-trnF) and the nuclear ribosomal internal transcribed spacer (ITS) region confirmed its infrageneric placement within subg. Pogostemon. Based on observations of the rediscovered population of P. dielsianus, we updated its morphological description, provided an illustration, and discussed its distribution. Under IUCN criteria, the species was categorized as "Critically Endangered (CR)".

Distribution and Host Selection of Tropical Rat Mite, Ornithonyssus bacoti, in Yunnan Province of Southwest China

Simple Summary

The tropical rat mite (Ornithonyssus bacoti) is a transmission vector of rickettsia pox and a potential vector of hemorrhagic fever with renal syndrome (HFRS). This article reports the distribution and host selection of O. bacoti in Yunnan Province of Southwest China. The original data came from the investigations in 39 counties of Yunnan. The prevalence (P_M), mean abundance (MA) and mean intensity (MI) were calculated to reflect the infestations of the dominant rat hosts with O. bacoti mites. The patchiness index and Taylor’s power law were used to measure the spatial distribution of the mites. A total of 4121 O. bacoti mites were identified from 15 species of small mammal hosts in 27 of the 39 investigated counties, and 99.20% of them (4088/4121) were found on rodents. The majority of total O. bacoti mites was found in the flatland landscape (91.28%) and indoor habitat (73.48%). Moreover, 51.78% and 40.09% of O. bacoti mites were identified from Rattus tanezumi and R. norvegicus, the two synanthropic rat species. The mites had some host-specificity, with a preference to two dominant hosts (R. tanezumi and R. norvegicus), and they were of aggregated distribution on R. tanezumi.

Abstract

(1) Background: As a species of gamasid mite, the tropical rat mite (Ornithonyssus bacoti) is a common ectoparasite on rodents and some other small mammals. Besides stinging humans to cause dermatitis, O. bacoti can be a vector of rickettsia pox and a potential vector of hemorrhagic fever with renal syndrome (HFRS). (2) Objective: The present study was conducted to understand the host selection of O. bacoti on different animal hosts and the distribution in different environmental gradients in Yunnan Province of Southwest China. (3) Methods: The original data came from the investigations in 39 counties of Yunnan, between 1990 and 2015. The animal hosts, rodents and some other small mammals were mainly trapped with mouse traps. The O. bacoti mites on the body surface of animal hosts were collected and identified in a conventional way. The constituent ratio (Cr), prevalence (P_M), mean abundance (MA) and mean intensity (MI) were used to reflect infestations of animal hosts with O. bacoti mites. The patchiness index and Taylor’s power law were used to measure the spatial distribution pattern of O. bacoti mites on their hosts. (4) Results: A total of 4121 tropical rat mites (O. bacoti) were identified from 15 species and 14,739 individuals of hosts, and 99.20% of them were found on rodents. More than half of O. bacoti mites (51.78%) were identified from the Asian house rat (Rattus tanezumi), and 40.09% of the mites from the Norway rat (R. norvegicus) (p < 0.05). The infestations of R. tanezumi (P_M = 7.61%, MA = 0.40 and MI = 5.31) and R. norvegicus (P_M = 10.98, MA = 1.14 and MI = 10.39) with O. bacoti mites were significantly higher than those of other host species (p < 0.05). The infestations of two dominant rat hosts (R. tanezumi and R. norvegicus) with O. bacoti mites varied in different environmental gradients (latitudes, longitudes, altitudes, landscapes and habitats) and on different sexes and ages of the hosts. The prevalence of juvenile R. norvegicus rats with O. bacoti mites (P_M = 12.90%) was significantly higher than that of adult rats (P_M = 9.62%) (p < 0.05). The prevalence (P_M = 38.46%) and mean abundance (MA = 2.28 mites/host) of R. tanezumi rats with O. bacoti mites in the high latitude were higher than those in the low latitudes (p < 0.05). The majority of the total collected 4121 O. bacoti mites was found in the flatland landscape (91.28%) and indoor habitat (73.48%) (p < 0.05). The P_M (10.66%) and MA (0.49 mites/host) of R. tanezumi rats with O. bacoti mites were significantly higher in the indoor habitat than in the outdoor habitat (p < 0.05). The tropical rat mites showed an aggregated distribution pattern on their first dominant host, R. tanezumi. Conclusion: The tropical rat mite (O. bacoti) is a widely distributed species of gamasid mite in Yunnan Province, Southwest China, and its dominant hosts are two synanthropic species of rats, R. tanezumi and R. norvegicus. It is mainly distributed in the flatland landscape and indoor habitat. It has some host-specificity, with a preference to rodents, especially R. tanezumi and R. norvegicus. The O. bacoti mites are of aggregated distribution on R. tanezumi rats.

Chinese species of Carinostigmus Tsuneki (Hymenoptera, Crabronidae), including three new species and a new record to China

Three new species of Carinostigmus Tsuneki from the Oriental Region of China are described: Carinostigmusfrontirugatus Bashir & Ma, sp. nov., C.latidentatus Bashir & Ma, sp. nov., and C.vesulcatus Bashir & Ma, sp. nov. In addition, ten species are reported, of which Carinostigmuspalawanensis (Tsuneki) is recorded in China for the first time. A key to known and new species of the genus Carinostigmus Tsuneki from China is provided.

A new freshwater snail (Gastropoda, Pomatiopsidae) endemic to Fuxian Lake (Yunnan, China) identified, based on morphological and DNA evidence

Background

Lacunopsis Deshayes, 1876 is restricted to South Asia and shows a remarkable regional distribution. Fifteen species have been reported from the lower Mekong River area of Laos, Cambodia, Thailand and Vietnam. Two species, Lacunopsisauris Y.-Y. Liu, Y.-X. Wang & W.-Z. Zhang, 1980 and L.yunnanensis Y.-Y. Liu, Y.-X. Wang & W.-Z. Zhang, 1980 occur in the Yunnan Province of China. The most recent treatments of Lacunopsis date back to the 1970s and 1980s, therefore detailed information on anatomy and DNA analysis is lacking.

New information

A new species of freshwater snail (Gastropoda, Pomatiopsidae), L.yuxiensis sp. nov., is described, based on samples collected from Fuxian Lake (Yunnan, China). The new species is characterised by a solid and dark red shell with yellow spiral ribs on the whorls, reminiscent of marine gastropods of the family Trochidae. In addition to a description of the shell morphology and radula, molecular data are presented for the first time. This compilation of faunal and taxonomic data provides relevant information for use in conservation efforts. Additional molecular data may prove helpful for both refining current knowledge on the morphological variability within this species and verifying the degree of cryptic diversity of this genus.

Seven new species of jumping spiders (Araneae, Salticidae) from Xishuangbanna, China

Seven new species of jumping spiders collected from Xishuangbanna Tropical Botanical Garden in Yunnan, China, are diagnosed and described: Charippusyinaesp. nov. (♂♀), Chinattusinflatussp. nov. (♂), Indomarengoyuisp. nov. (♂), Phintellabannasp. nov. (♂♀), P.miisp. nov. (♂♀), Simaethamenglunsp. nov. (♂♀) and S.pengisp. nov. (♂♀). Charippusyinaesp. nov. is the second species of the genus Charippus Thorell, 1895, which was previously known only from one sex.

First record of Theloderma pyaukkya Dever, 2017 (Anura: Rhacophoridae) in China, with range extension of Theloderma moloch (Annandale, 1912) to Yunnan

Theloderma pyaukkya is recorded for the first time in China based on a specimen collected from western Yunnan. Morphologically, the specimen shows good agreement with the original description of T. pyaukkya, and phylogenetically is clustered with the type specimens and holotype of T. pyaukkya from Kachin State (northern Myanmar) with strong support. The taxonomic status of T. pyaukkya from Chin State (western Myanmar) needs further examination. In addition, Theloderma moloch is also recorded in Yunnan for the first time. This brings the number of Theloderma species recorded in Yunnan, China, to seven, namely, T. albopunctatum, T. baibungense, T. bicolor, T. gordoni, T. moloch, T. pyaukkya, and T. rhododiscus.

Deinostigma fasciculatum, a new species of Gesneriaceae in Yunnan, China

A new species of Deinostigma (Gesneriaceae) from Yunnan, China, Deinostigma fasciculatum W.H.Chen & Y.M.Shui, sp. nov., has been discovered and described. In the genus, the new species is similar to D. cicatricosum (W.T. Wang) D.J. Middleton & Mich. Möller and D. cyrtocarpum (D. Fang & L. Zeng) Mich. Möller & H.J. Atkins in dark purple flowers and falcate fruit, but differs from them mainly in the inflorescences with fasciculate flowers, calyx lobes (reflexed, narrowly lanceolate and 1.2-1.3 cm long), corolla tubes (sharply contracted below middle and white outside and below throat). The above three species grow nearby non-limestone wet cliffs and geographically isolated with different distributions (the new species in Southeast Yunnan, D. cicatricosum in Eastern Guangxi and D. cyrtocarpum in Southern Guangxi and Guangdong, China).

A New Genus and Two New Species of Freshwater Crab (Crustacea: Brachyura: Potamidae) with Unusual Coiled Tip of Male Second Gonopods from Yunnan, Southwestern China

Two new species of a new genus, Tortomon puer n. gen. n. sp. and T. gejiu n. gen. n. sp. are described from southern Yunnan, southwestern China, based on the morphology and mitochondrial 16S rDNA sequences. The new genus resembles Tenuipotamon Dai, 1990 and Parvuspotamon Dai & Bo, 1994, but can be separated by characters of the male thoracic sternum, male pleon, male first gonopod, and especially the coiled tip of the male second gonopod. The latter character easily separates Tortomon n. gen. from known potamid genera. Notes on the general biology of the two new species are also included.

Artificial (137Cs) and natural (40K) radioactivity and total potassium in medicinal fungi from Yunnan in China

Evaluated has been radioactive contamination with ¹³⁷Cs in parallel to occurrence of ⁴⁰K and total K in 31 species of medicinal mushrooms from Yunnan, China. We chose species that were not previously studied. The activity concentrations of ¹³⁷Cs in the medicinal fungi in this study were low. The maximum values were 54 ± 4 Bq kg^-1 dry biomass (db) in caps and 48 ± 5 Bq kg^-1 db in stipes of saprotrophic fungus Gerronema xanthophyllum from the family of Tricholomataceae. Mushrooms with relatively higher activity concentrations of ⁴⁰K were among the non-polypore species but certain species from the genus Ganoderma such as G. applanatum, G. capense, G. philippii and G. sinense showed ⁴⁰K in the higher range of 900 ± 240 to 1400 ± 340 Bq kg^-1 db. The concentrations of total K in the fungal materials in this study were in the range from 2.9 ± 6.5 g kg^-1 db in Fomes rufolaccatus to 110 ± 6 g kg^-1 db in G. xanthophyllum. The species studied, which represented both some popular wood-decaying polypore fungi but also terrestrial forms from the herbal medicine of China, can be considered as little contaminated with ¹³⁷Cs and potentially good source of leachable K in extract and decoction or as a powdered form in capsules.

Spatial distributions and homolog profiles of chlorinated nonane paraffins, and short and medium chain chlorinated paraffins in soils from Yunnan, China

To preliminarily investigate the occurrence, spatial distributions, homolog compositions, and ecological risks of chlorinated paraffins (CPs) in Yunnan, China, 110 soil samples were collected from an area part of Yunnan, representative of the whole Yunnan area, where had similar characteristics to most parts of Yunnan and 22 pooled soil samples were analyzed for 50 CP congener groups (C₉-₁₇Cl_5-10). The chlorinated nonane paraffin (C₉-CP), short chain (SCCP), and medium chain chlorinated paraffin (MCCP) concentrations in soil samples were 8-109 ng/g (average 39 ng/g), 79-948 ng/g (average 348 ng/g), and 20-1206 ng/g (average 229 ng/g), respectively. The C₉-CP homologs contributed 5%-16% of the C_9-13-CP concentrations in soils. No significant correlation was found between CP concentrations and the total organic carbon content (P > 0.05). The CP levels in soils from Yunnan were at a medium level compared with those in other areas worldwide. Human activity and atmosphere deposition would influence the levels and spatial distributions of CPs in this area. The concentrations of CPs in east area were higher than those in west area. C₁₀Cl_6-7 were the major SCCP congeners and C₁₄Cl_6-7 were the major MCCP congeners. Principal component analysis indicated that SCCPs and MCCPs came from different sources. A preliminary risk assessment indicated that these concentrations of CPs in soil from Yunnan do not pose a significant ecological risk for soil organisms.

HIV-1 Drug Resistance in ART-Naïve Individuals in Myanmar

Background

Estimating the prevalence and characterizing the transmission of HIV-1 drug resistance in treatment-naïve individuals are very important in the prevention and control of HIV/AIDS. As one of the areas most affected by HIV/AIDS, few data are currently available for HIV-1 drug resistance in antiretroviral therapy (ART)-naïve individuals in Myanmar, which borders Yunnan, China.

Methods

HIV-1 pol sequences from ART-naïve HIV-1-infected individuals during 2008 and 2014 in Myanmar were retrieved from our previous studies. HIV-1 transmitted drug resistance (TDR) and susceptibility to antiretroviral drugs were predicted using the Stanford HIVdb program. HIV-1 transmission cluster (TC) was determined by Cluster Picker.

Results

A total of 169 partial pol sequences from ART-naïve HIV-1 positive Burmese were analyzed. The prevalence of TDR was 20.1%. CRF01_AE and BC recombinants appeared to have a higher prevalence of TDR than other subtypes. The V179D/T was found to be very common in the China–Myanmar border region and was involved in half of the transmission clusters formed by HIV-1 drug-resistance strains in this region. Comparison showed that drug-resistance mutation profile in Myanmar was very similar to that in Dehong prefecture of Yunnan. By further phylogenetic analysis with all available sequences from the China–Myanmar border region, four HIV-1 drug-resistance-related TCs were identified. Three of them were formed by Burmese long-distance truck drivers and the Burmese staying in Yunnan, and another was formed by Burmese injection drug users staying in Myanmar and Yunnan. These results suggest a potential transmission link of HIV-1 drug resistance between Myanmar and Yunnan.

Conclusion

Given the high prevalence of TDR in Myanmar, and the potential risk of cross-border transmission of HIV-1 drug-resistant strains between Myanmar and Yunnan, China, ongoing monitoring of HIV-1 drug resistance in ART-naïve individuals will provide a guideline for clinical antiretroviral treatment and benefit the prevention and control of HIV/AIDS in this border region.

Characterization of a novel hepatitis B virus subgenotype B10 among chronic hepatitis B patients in Yunnan, China

Diversity and complexity of Hepatitis B Virus (HBV) may be related to clinical outcome, disease prognosis, and response to antiviral treatment in infected patients. HBV has been classified into ten genotypes (A-I) and over 50 subgenotypes. However, there are still some variants of HBV that need to be classified. Here, we investigated genotypic profiles of HBV among 150 patients with chronic hepatitis B in Yunnan, China, and characterized a novel HBV subgenotype B10. Multiple subgenotypes were identified in 146 subjects with successful sequencing for the S gene, including genotype B2 (48.6%, 71/146), C1 (34.2%, 50/146), B4 (8.9%, 13/146), C2 (0.7%, 1/146), C5 (0.7%, 1/146) and an unclassified group (6.8%,10/146). To characterize the unclassified group, seven HBV complete genomes were successfully amplified and analyzed. The seven strains constituted a potentially novel B subgenotype that we designated as B10 based on the characteristics of a monophyletic cluster, > 4% genetic distances, no significant evidence of recombination, and no epidemiologic link among individuals. Moreover, Bayesian analyses showed that HBV B10 originated around the B·C 1.80 thousand years old, suggesting a much ancient HBV strain. This findings highlighted the importance of continual monitoring of genetic diversity of HBV strains in Yunnan, China.

[Trend Analysis of Clinical Epidemiological Characteristics of Lung Cancer in Yunnan Cancer Hospital from 2005 to 2014]

BACKGROUND

Yunnan is a country with a high incidence of lung cancer in China and all over the world, and its morbidity and mortality are still rising. With changes in lifestyle and environment, the clinical epidemiological characteristics of lung cancer are converting. However, the trend of clinical characteristics of lung cancer in Yunnan has not been reported in the past 10 years, and we should start further research. The aim of this study was to explore the clinical characteristics and changes of lung cancer in Yunnan from 2005 to 2014, and to provide a theoretical basis for lung cancer prevention and treatment in this region.

METHODS

A retrospective survey was used to extract the cases of lung cancer patients who were treated in our hospital from 2005 to 2014 by simple random sampling. The sociodemographic and clinicopathological characteristics of the patients were extracted by using a unified and standardized questionnaire. And the statistical analysis of the data was performed.

RESULTS

A total of 1,000 patients with lung cancer were enrolled, with an average age of (58.1±10.1) years, and the ratio of male to female was 3.08/1.00. The proportion of male patients decreased from 75.0% in 2005 to 66.0% in 2014, while female patients increased from 25.0% to 34.0% (P=0.007). The proportion of patients aged ≥60 years increased from 30.0% in 2005 to 39.0% in 2014, and the proportion of patients under 60 years of age decreased, but there was no statistical difference (P=0.532). The proportion of patients with lower levels of education (primary or junior high school) increased from 36.0% to 66.0% (P<0.001). The proportion of smokers decreased from 71.0% to 47.0%, and the number of non-smokers increased from 29.0% to 52.0% (P=0.003). The patients with advanced lung cancer (IIIb-IV) increased from 20.0% to 54.0%, while the proportion of stage II-IIIa decreased from 62.0% to 24.0% (P=0.002). The proportion of adenocarcinoma increased from 36.0% to 61.0%, while squamous cell carcinoma decreased from 32.0% to 27.0% (P<0.001). Chest X-ray applications decreased from 91.0% to 58.0% (P<0.001), while chest computed tomography (CT) usage increased from 46.0% to 89.0% (P<0.001). Head magnetic resonance imaging (MRI) usage increased from 1.0% to 15.0% (P<0.001). The bone scan increased from 35.0% to 78.0% (P<0.001). The positron emission tomography-CT (PET-CT) inspection technique increased significantly from 0.0% to 17.0%. Chemotherapy (P=0.67) and surgery (P=0.78) were the most common treatments and the treatments were unchanged over the past 10 years.

CONCLUSIONS

The proportion of female patients increased, the clinical stage was late, and the pathological type transformation was a major challenge in the prevention and treatment of lung cancer in Yunnan. Despite major changes in sociodemographic and clinicopathological features, the choice of primary treatment modalities has not changed, and further research is needed.

Sorbus gongshanensis (Rosaceae), a new species from the Hengduan Mountains, China

Sorbus gongshanensis sp. nov., a new species from the Hengduan Mountains China, is described and illustrated. It is similar to S. kurzii from China (Yunnan & Xizang), Nepal, and Sikkim in the size of the leaflets, glabrous veins, persistent (sometimes) herbaceous stipules and reddish brown villous inflorescences and red fruits, but differs in its serrate leaflet margins toothed in the distal half or often almost to their base, reddish brown villous to glabrous hypanthium and reddish brown villous infructescences, among other characteristics.

Genetic polymorphisms of the HLA-DP and HLA-DQ genes could influence Hepatitis B virus infection in Yunnan population

Hepatitis B, caused by hepatitis B virus (HBV) infection, is one of the epidemic and infectious hepatitis diseases. The sigle-nucleotide polymorphisms were identified to associate with HBV infection in East Asian population by genome-wide association study (GWAS), but no study in Yunnan HBV population was reported. We recruited 493 HBV patients and 460 general controls to genotype 7 GWAS SNPs, and then, the association study was performed between these SNPs and biochemical features of HBV patients. The results showed that genotype and allele frequencies of SNPs in the HLA-DP (rs3077, 9277535, and 3128917) and HLA-DQ (rs2856718 and 7453920) genes were associated with HBV infection. Significantly different genotyping frequencies were investigated among three HBV subgroups. Genotype AA of rs3130542 (HLA-C) showed significantly higher frequency in subgroup #1 patients than the other two subgroups (#1 vs. #2, p = .02; #1 vs. #3, p = .03). Meanwhile, genotype frequencies of rs3077, rs9277535, and 3128917 (HLA-DP) were significantly different between patients in subgroup #2 and #3. The indirect bilirubin level was significantly lower in patients with genotype CT of rs3077 than patients with genotype CC (p = .009) or TT (p = .016), and it also showed lower level in patients with genotype GT of rs3128917 than patients with genotype GG (p = .015). The direct bilirubin level was higher in patients with genotype TT of rs4821116 (UBE2L3) than patients with genotype CT (p = .010). In summary, we identified the association between GWAS SNPs and HBV infection or biochemical features in Yunnan HBV population.

A new species of Phoebe (Lauraceae) from south-western China

Here Phoebe hekouensis Bing Liu, W.Y. Jin, L.N. Zhao & Y. Yang from south-eastern Yunnan Province of China is described as new to science. This species is morphologically similar to P. megacalyx H.W. Li in the twigs being robust and brownish tomentose, the ovary densely pubescent and the tepals longer than 1 cm, but differs from the latter species by the leaves being broader, up to 18 cm (vs. 4.5-11.5 cm), the inflorescences shorter, ca. 10-15 cm long (vs. up to 23 cm), the ovary completely and densely pubescent (vs. pubescent only at the apical portion) and the stigma conspicuous (vs. inconspicuous). The new species also resembles P. macrocarpa C.Y. Wu, but differs from the latter by the tepals being longer, 9-13 mm long (vs. ca. 4 mm).

Genetic polymorphism of histidine rich protein 2 in Plasmodium falciparum isolates from different infection sources in Yunnan Province, China

Background

Failed diagnoses of some falciparum malaria cases by RDTs are constantly reported in recent years. Plasmodium falciparum histidine-rich protein 2 (pfhpr2) gene deficiency has been found to be the major reason of RDTs failure in many countries. This article analysed the deletion of pfhpr2 gene of falciparum malaria cases isolated in Yunnan Province, China.

Methods

Blood samples from falciparum malaria cases diagnosed in Yunnan Province were collected. Plasmodium genomic DNA was extracted and the pfhrp2 gene exon2 region was amplified via nested PCR. The haplotype of the DNA sequence, the nucleic acid diversity index (PI) and expected heterozygosity (He) were analyzed. Count PfHRP2 amino acid peptide sequence repeat and its times, and predict the properties of PfHRP2 peptide chain reaction to RDTs testing.

Results

A total of 306 blood samples were collected, 84.9% (259/306) from which pfhrp2 PCR amplification products (gene exon2) were obtained, while the remaining 47 samples were false amplification. The length of the 250 DNA sequences ranged from 345 - 927 bp, with 151 haplotypes, with PI and He values of 0.169 and 0.983, respectively. The length of the PfHRP2 peptide chain translated from 250 DNA sequences ranged from 115 to 309 aa. All peptide chains had more than an amino acid codon deletion. All 250 PfHRP2 strands ended with a type 12 amino acid repeat, 98.0% (245/250) started with a type 1 repetition and 2.0% (5/250) with a type 2 repetition. The detection rate for type 2 duplicates was 100% (250/250). Prediction of RDT sensitivity of PfHRP2 peptide chains based on type 2 and type 7 repeats showed that 9.60% (24/250), 50.0% (125/250), 13.20% (33/250) and 27.20.5% (68/250) of the 250 peptide chains were very sensitive, sensitive, borderline and non-sensitive, respectively.

Conclusion

The diversified polymorphism of the pfhrp2 gene deletion from different infection sources in the Yunnan province are extremely complex. The cause of the failure of pfhrp2 exon2 amplification is still to be investigated. The results of this study appeal to Yunnan Province for a timely evaluation of the effectiveness and applicability of RDTs in the diagnosis of malaria.