Scaffold hopping by net photochemical carbon deletion of azaarenes

Pd-Catalyzed Photoinduced Interceptive Decarboxylative Allylation

Herein, we describe a photoinduced Pd-catalyzed interceptive decarboxylative allylation of allyl esters. Our protocol provides a new gateway to enable atom pair swaps or a series of contractions and elongations, thus offering unconventional disconnections and a modular yet broadly applicable tool for rapidly and reliably accessing sp3 architectures in drug discovery.

Visible Light-Induced Single-Atom Insertion of Indenes via Aerobic Ring Scission-Condensation-Rearomatization

In this study, we present a photocatalyzed single-atom insertion of indenes, involving an aerobic ring scission into dicarbonyl intermediates, which subsequently undergo condensation and rearomatization to efficiently synthesize isoquinoline and naphthalene derivatives. The use of an inexpensive organic dye as the photocatalyst under aerobic conditions with cheap ammonium acetate (NH4OAc) as the nitrogen source makes this method very practical and environmentally friendly to access isoquinoline. Alternatively, an intramolecular carbon-atom-insertion process, involving the Aldol reaction of the dicarbonyl intermediates, affords the naphthalenamine and naphthalen-2-ol derivatives. Mechanistic studies support that the superoxide anion radical species mediates the C═C double bond scission of indenes rather than the singlet oxygen intermediate.

Single-atom molecular editing: transformative advances in carbocyclic and heterocyclic frameworks

Single-atom editing has emerged as a transformative strategy in organic synthesis, enabling precise modification of carbocyclic and heterocyclic frameworks by selectively targeting single atoms. These frameworks are crucial backbones of pharmaceuticals, agrochemicals, and advanced materials, making this approach powerful for organic chemists. In drug discovery and natural product synthesis, single-atom editing diversifies molecular scaffolds and tailors molecular properties to enhance pharmacological activity. In heterocyclic synthesis, this approach enables controlled heteroatom substitution, addition or deletion in an unprecedented and highly selective manner compared to traditional methods. Recent advances in transition-metal catalysis, organocatalysis, photoredox catalysis, and heterocycle-to-heterocycle metamorphosis have expanded the versatility of single-atom editing, enabling the synthesis of various carbocyclic and heterocyclic compounds. Principally, this approach has been exploited to design new architectures that are not easily accessible by other methods and to establish major improvements in the synthesis of known scaffolds, providing more efficient and sustainable routes towards large-scale chemical synthesis. This review overviews recent advances, focusing on carbocyclic and heterocyclic frameworks, and is organized by key single-atom editing strategies, such as ring contractions, atom deletions, ring expansions, and atom insertions. The review highlights key transformations like Favorskii and Wolff rearrangements, alongside modern photochemical and transition-metal-catalyzed processes, to provide a broad overview of synthetic applications and inspire further advancements in targeted molecular edits.

Fusion of Four Aromatic Rings via an Atom-Mutual-Embedding Strategy to Form a Tetrahexacyclic System

Skeletal manipulation of aromatic compounds has emerged as a potent tool in synthetic chemistry, but simultaneous multiring manipulation remains largely unexplored due to the inherent complexities of ring and site selectivity. Herein, we report an unprecedented multiring skeletal manipulation that fuses four 5-membered aromatic rings, comprising two organic and two metal-containing aromatic systems, into a novel metal-bridged 6/6/6/6-membered ring scaffold. The sequential ring fusion is accomplished through an atom-mutual-embedding strategy; this strategy entails the stepwise insertion of two nitrogen atoms into separate metal-carbon bonds and simultaneously integrates a metal atom as a bridge across two isoxazole moieties. The presence of a central metal atom is crucial for ensuring precise substrate alignment and enhancing both the ring and site specificity. The resulting tetrahexacyclic products exhibit remarkable stability and superior near-infrared (NIR) functional properties, surpassing those of the precursor compounds. This work not only establishes a conceptual foundation for designing versatile substrate molecules amenable to intricate editing but also contributes to the rational and performance-targeted manipulation of molecular architectures.

The Rise of Chalcohalide Solar Cells: Comprehensive Insights From Materials to Devices

While lead-halide perovskites achieve high efficiencies, their toxicity and instability drive the search for safer materials. Chalcohalides, combining chalcogen and halogen anions in versatile structures, emerge as earth-abundant, nontoxic alternatives for efficient photovoltaic (PV) devices. A wide variety of chalcohalide materials, including pnictogen metals-, post-transition metals-, mixed-metals- and organic-inorganic metals-based chalcohalides, offer diverse structural, compositional, and optoelectronic characteristics. Some of these materials have already been experimentally synthesized and integrated into PV devices, achieving efficiencies of 4-6%, while others remain theoretically predicated. Despite these advancements, significant challenges must be addressed to fully realize the potential of chalcohalides as next-generation PV absorbers. This review provides a comprehensive insight of the fundamental properties of chalcohalide materials, emphasizing their unique structures, highly interesting optoelectronic and dielectric properties, to fuel further research and guide the development of high-efficiency chalcohalide solar cells. Various synthesis techniques are discussed, highlighting important and potentially overlooked strategies for fabricating complex quaternary and pentanary chalcohalide materials. Additionally, the working principles of different device structures and recent advances in fabricating efficient chalcohalide solar cells are covered. We hope that this review inspires further exciting research, innovative approaches, and breakthroughs in the field of chalcohalide materials.

Photocatalytic Hydrogenation of Quinolines to Form 1,2,3,4-Tetrahdyroquinolines Using Water as the Hydrogen Atom Donor

The design of a sequential process combining hydrogenation and a subsequent stereomutation is an attractive strategy for the stereoselective reduction of cyclic disubstituted π-systems to access the thermodynamically more stable trans isomer, which would be the minor compound considering a kinetically controlled cis hydrogenation process. Herein, we demonstrate stereoselective photocatalytic phosphine-mediated quinoline reductions with water as the hydrogen atom source under mild conditions to afford the corresponding 1,2,3,4-tetrahydroquinolines with complete selectivity towards reduction of the heteroaromatic part. The method shows broad functional group tolerance and provides access to trans-2,3-disubstituted tetrahydroquinolines with moderate to excellent diastereoselectivity. These trans isomers are not readily obtained using established methods, as transition-metal-catalyzed regioselective quinoline hydrogenations provide the corresponding cis-2,3-disubstituted isomers with high selectivity. Mechanistic studies reveal that the hydrogenation of the 2,3-disubstituted quinolines proceeds through a cascade process comprising an initial cis selective photocatalytic hydrogenation of the heteroarene core of the quinoline, followed by a trans selective photoisomerization.

Indole-Quinoline Transmutation Enabled by a Formal Rhodium Carbynoid

Skeleton editing is an emerging and powerful tool in organic chemistry because it can simplify synthetic procedures towards complex molecules. Herein, we present an approach for indole-quinoline transmutation through rhodium-catalyzed single-carbon insertion into the C2(sp2)─C3(sp2) bond of an indole with an α-diazotrifluoroethyl sulfonium salt that we developed. This protocol involves a formal trifluoromethyl rhodium carbynoid (CF3C+ = Rh) resembling a trifluoromethyl cationic carbyne (CF3C+:), allowing facile access to an array of quinolines in moderate to high yields. Potential applications in the late-stage skeletal editing of pharmaceutical and natural product derivatives, preparation of adapalene analogs, scaled-up synthesis, and transformations of products are highlighted. Finally, a computational study was conducted to support the envisioned mechanism.

Skeletal Editing of Isoindolines to Tetralins

We present a skeletal editing strategy for transforming isoindolines into tetralins via a cascade N-atom removal deconstruction followed by a Diels-Alder reaction between in situ generated o-quinodimethanes and activated alkenes. This approach features a broad substrate scope, excellent stereoselectivity, and high yields, demonstrating its applicability to complex bioactive compounds and natural products. Notably, case studies showcase the efficient construction of challenging spirocyclic and bridged systems, underscoring the method's versatility and potential for advancing applications in synthetic chemistry.

Direct Conversion of Aromatic Lactones into Bioisosteres by Carbonyl-to-Boranol Exchange

Bioisosteric replacement is an important strategy in drug discovery and is commonly practiced in medicinal chemistry; however, the incorporation of bioisosteres typically requires laborious multistep de novo synthesis. The direct conversion of a functional group into its corresponding bioisostere is of particular significance in evaluating structure-property relationships. Herein, we report a functional-group-exchange strategy that enables the direct conversion of aromatic lactones, a prevalent motif in bioactive molecules, into their corresponding cyclic hemiboronic acid bioisosteres. Scope evaluation and product derivatization experiments demonstrate the synthetic value and broad functional-group compatibility of this strategy, while the application of this methodology to the rapid remodeling of chromenone cores in bioactive molecules highlights its utility.

Switchable skeletal editing of quinolines enabled by cyclizative sequential rearrangements

The rapid diversification of core ring structures in complex molecules through switchable skeletal editing is valuable in the drug discovery process. However, controllable methods for chemically divergent modifications of azaarene frameworks using common substrates are challenging, despite the potential to maximize structural diversity and complexity. Here we report the tunable skeletal editing of quinolines through Brønsted acid-catalysed multicomponent reactions of quinoline N-oxides, dialkyl acetylenedicarboxylates and water to generate nitrogen-containing heteroaromatic compounds together with linear compounds in a modular fashion. Specifically, in a one-pot procedure, after cyclization and sequential rearrangement processes, the quinoline N-oxides are easily converted into unique 2-substituted indolines. These then undergo acid-promoted fragmentation to give indoles, base-facilitated ring-opening to afford 2-alkenylanilines and oxidative cyclization to yield isoquinolinones. Catalytic asymmetric skeletal editing of quinolines is also realized, providing enantioenriched benzazepines bearing quaternary stereocentres, and late-stage skeletal modification of quinoline cores in several drugs is demonstrated.

Reaction development: a student's checklist

So you've discovered a reaction. But how do you turn this new discovery into a fully-fledged program that maximises the potential of your novel transformation? Herein, we provide a student's checklist to serve as a helpful guide for synthesis development, allowing you to thoroughly investigate the chemistry in question while ensuring that no key aspect of the project is overlooked. A wide variety of the most illuminating synthetic and spectroscopic techniques will be summarised, in conjunction with literature examples and our own insights, to provide sound justifications for their implementation towards the goal of developing new reactions.

Cheminformatic Analysis of Core-Atom Transformations in Pharmaceutically Relevant Heteroaromatics

Heteroaromatics are the basis for many pharmaceuticals. The ability to modify these structures through selective core-atom transformations, or "skeletal edits", can dramatically expand the landscape for drug discovery and development. However, despite the importance of core-atom modifications, the quantitative impact of such transformations on accessible chemical space remains undefined. Here, we report a cheminformatic platform to analyze which skeletal edits would most increase access to novel chemical space. This study underscores the significance of emerging single and multiple core-atom transformations of heteroaromatics in enhancing chemical diversity, for example, at a late-stage of a drug discovery campaign. Our findings provide a quantitative framework for prioritizing core-atom modifications in heteroaromatic structural motifs, calling for the development of new methods to achieve these types of transformations.

Skeleton Editing of Benzothiazoles to Spiro[benzothiazole-n-alkanes] by Carbon-to-Carbon Single-Atom Swapping

Skeleton editing can be used to precisely replace or rearrange atoms in the core ring structure of complex molecules and is often used to modify heteroaromatic compounds. However, this approach has not been used to modify thiazole rings. We report the direct construction of spiro[benzothiazole-n-alkanes] through skeleton editing of thiazolium salts by carbon-to-carbon single-atom swapping. Skeleton editing via carbon deletion and insertion has the advantages of high efficiency, high selectivity, simple operation, and one-step, metal-catalyst-free construction of novel spirocyclic products with novel structures.

Diversity-Generating Skeletal Editing Transformations

ConspectusSkeletal editing, as a synthetic tool, offers the unique potential to selectively and efficiently modify the core skeleton of a target molecule at a late-stage. The main benefit of such transformations is the rapid exploration of the chemical space around lead compounds without necessitating a de novo synthesis for each new molecule. However, many skeletal editing transformations are inherently restricted to generating a single product from a single starting compound, limiting the potential for diversification, a concept central to expediting structure-activity relationship (SAR) investigations. In this Account, we describe our efforts to develop novel skeletal editing transformations in which a modification to the central motif of a molecule is performed simultaneously with the incorporation of additional functionality that can be easily varied through a judicious choice of the reagents. Specifically, we successfully developed an α-iodonium diazo-based carbynyl radical equivalent reagent that, under photoredox conditions, could facilitate the ring-expansion of indene scaffolds while enabling the insertion of over ten different functionalized carbon atoms into the corresponding naphthalene products. This concept was later extended to the design of an atomic carbon equivalent reagent that could promote mild and selective Ciamician-Dennstedt-type indole ring-expansion reactions, while simultaneously installing an oxime ester handle that could undergo further functionalization. Furthermore, we highlight recent work from our group on multiple-atom insertion reactions, namely, the development of a photocatalyzed De Mayo reaction for the ring-expansion of cyclic ketones and a photocatalyzed dearomative ring-expansion of thiophenes via small-ring insertion. In both of these cases, multiple products can be potentially accessed from a single starting material upon variation of the insertion reagent. The diversity-generating skeletal editing strategy could also be applied to single-atom transmutation, as demonstrated by the development of a nitrogen-to-functionalized carbon atom transmutation reaction to convert pyridine to benzene rings. Here, the desired transformation was achieved via a sequence of pyridine ring-opening, Horner-Wadsworth-Emmons (HWE) olefination, and ring-closure, with a judicious choice of the HWE reagent allowing the installation of a wide variety of versatile functional groups. Finally, an energy transfer-mediated quinoline ring-contraction is discussed, specifically with reference to the ways in which it does and does not fit the criteria of a skeletal editing reaction. Although formal atom deletion transformations are typically restricted to single products from each discrete substrate, this [2 + 2] cycloaddition/rearrangement cascade also involves the incorporation of an alkene into the molecule and introduces a point of variation that can be exploited for diversity generation. We hope to not only highlight the transformations reported herein but also inspire further research into this synthetic strategy to access new classes of skeletal editing transformations that, through rapid diversity generation, provide the potential to expedite SAR investigations.

Transition Metal-Catalyzed Nitrogen Atom Insertion into Carbocycles

ConspectusN-Heterocycles are essential in pharmaceutical engineering, materials science, and synthetic chemistry. Recently, skeletal editing, which involves making specific point changes to the core of a molecule through single-atom insertion, deletion, or transmutation, has gained attention for its potential to modify complex substrates. In this context, the insertion of nitrogen atoms into carbocycles to form N-heterocycles has emerged as a significant research focus in modern synthetic chemistry owing to its novel synthetic logic. This distinctive retrosynthetic approach enables late-stage modification of molecular skeletons and provides a different pathway for synthesizing multiply substituted N-heterocycles. Nevertheless, nitrogen atom insertion into carbocycles has proven challenging because of the inherent inertness of carbon-based skeletons and difficulty in cleaving C-C bonds. Therefore, selective insertion of nitrogen atoms for skeletal editing remains a challenging and growing field in synthetic chemistry. This Account primarily highlights the contributions of our laboratory to this active field and acknowledges the key contributions from other researchers. It is organized into two sections based on the type of the carbocycle. The first section explores the insertion of nitrogen atoms into cycloalkenes. Recent Co-catalyzed oxidative azidation strategies have enabled nitrogen atom insertion into cyclobutenes, cyclopentenes, and cyclohexenes, facilitating the synthesis of polysubstituted pyridines, which has been conventionally challenging through pyridine cross-coupling. The subsequent section highlights our discovery in the realm of nitrogen atom insertion into arenes. The site-selective skeletal editing of stable arenes is challenging in synthetic chemistry. We developed a method for the intramolecular insertion of nitrogen atoms into the benzene rings of 2-amino biaryls by suppressing the competing C-H insertion process by using a paddlewheel dirhodium catalyst. In addition, to address the challenging site-selective issues in nitrogen atom insertion, we employed arenols as substrates, which could act as selective controlling elements in site-selective skeletal editing. We reported a Cu-catalyzed nitrogen atom insertion into arenols, which proceeds through a dearomative azidation/aryl migration process, enabling the site-selective incorporation of nitrogen atoms into arenes. Inspired by this result, we recently extended the reaction model by using a Fe-catalyst to facilitate the ring contraction of the nitrogen-inserted product, achieving the carbon-to-nitrogen transmutation of arenols. Various complex polyaromatic arenols could effectively undergo the desired atom's transmutation, presenting considerable potential for various applications in materials chemistry. In this Account, we present an overview of our achievements in nitrogen atom insertion reactions, with a focus on the reaction scopes, mechanistic features, and synthetic applications. We anticipate that this Account will provide valuable insights and propel the development of innovative methodologies in both skeletal editing and N-heterocycle synthesis.

Molecular Ring Remodeling through C-C Bond Cleavage

ConspectusStable and inert C-C bonds form the fundamental framework of organic compounds. Consequently, direct transformations involving C-C bond cleavage present an innovative approach for the rapid modification and remodeling of molecular skeletons. In recent years, the concept of molecular skeletal editing has garnered widespread attention and has been significantly developed, providing new opportunities for the late-stage modification of bioactive molecules, the high-value transformation of bulk chemicals, and a revolution in the traditional fragment coupling strategies of chemical synthesis. Notable advancements in this field have focused on C-C bond cleavage and the remodeling of cyclic molecules, including ring expansion, ring contraction, and ring-opening reactions, thereby enriching the synthetic toolbox available to chemists. However, selective C-C bond transformation remains a formidable challenge, especially in the remodeling of complex molecules, due to the high bond dissociation energy and the difficulty in achieving precise selectivity control. Over the past few years, our group has made efforts to address these challenges. We have demonstrated the potential of cyclic molecule remodeling reactions as an efficient strategy for the synthesis and modification of complex molecules.Herein, we present two major thematic advancements achieved by our group, utilizing cascade activation and entropy-driven reconstruction strategies for molecular ring remodeling via C-C bond cleavage. These strategies are characterized by mild conditions, the accessibility of catalysts and reagents, and exceptional functional group compatibility, thereby emerging as novel approaches for molecular ring remodeling through atom-incorporation reactions mainly on nitrogenation, oxygenation, and halogenation to synthesize pharmaceuticals, natural products, and material molecules. (1) Ring expansion reactions: We developed novel reactions that enable the insertion of C-, N-, and O-containing units into molecular rings. These methodologies offer practical and efficient routes for synthesizing amides, amines, lactones, and nitrogen-containing heterocycles. (2) Ring-opening reactions: C-C bond cleavage in ring-opening reactions enables the efficient construction of distally difunctionalized molecular frameworks. By utilizing a transition metal catalysis and radical-mediated process, we have successfully achieved the cleavage of both C-C single bonds and C═C double bonds within molecular rings. Furthermore, we have tackled the highly challenging arene ring-opening (ARO) reaction, enabling the construction of stereoselective conjugated systems through the unsaturation liberation of aromatic systems. Mechanistic studies and DFT calculations have provided critical insights into these processes. We have also identified key intermediates involved in C-C bond cleavage, including benzyl azide, O-acetyl hydroxylamine, β-azido peroxyl radical, copper bisnitrene, and 2-nitrene indazole. These findings have deepened our understanding of the mechanisms and the entropy-driven reconstruction strategy, which has further promoted the discovery of related C-C bond transformations of acyclic substrates.

Pyrrolidine synthesis via ring contraction of pyridines

A ring contraction of easily available cyclic compounds to smaller cycles that are valuable but difficult to synthetically access is one of important skeletal editing strategies. Pyrrolidine synthesis via a ring contraction of pyridines, which are abundant, cheap, and readily available bulk chemicals in chemical industry, is highly promising to accelerate drug discovery and development research due to the great demand of pyrrolidine skeletons in medicinal molecules. Herein we report a photo-promoted ring contraction of pyridines with silylborane to afford pyrrolidine derivatives bearing a 2-azabicyclo[3.1.0]hex-3-ene skeleton. The reaction demonstrates broad substrate scope with high functional group compatibility, realizing facile access to 6-silyl-2-azabicyclo[3.1.0]hex-3-ene derivatives that work as powerful synthons for the synthesis of functionalized pyrrolidines and nitrogen-containing compounds. The reaction mechanism is clarified to proceed via 2-silyl-1,2-dihydropyridine and vinylazomethine ylide as intermediates, which are connected via photochemical or thermal silyl migration.

Photochemical aerobic sulfonylation-cyclization-selenylation to indole-fused medium-sized N-heterocycles in 2-Me-THF

Indole-fused medium-sized diazepinones are privileged structural motifs found in many high-value pharmaceuticals. To construct these challenging molecular skeletons, previous methods are mainly achieved by [5+2] annulation strategies with the aid of transition metal (Pd, Rh, Ru) catalyzed oxidative C-H coupling. Herein, we report a novel visible-light-induced sulfonylation-cyclization-selenylation reaction for the rapid construction of highly functionalized indole-fused medium-sized diazepinones with biomass feedstock 2-Me-THF as the medium. Based on the mechanism studied, an electrophilic radical sulfonylation-cyclization and subsequent aerobic electrophilic C-3 selenylation route is proposed.

Ylide-Induced Ring Contraction of Coumarins to Benzofurans: Applications to the Synthesis of Bis-Heterocycles

We report an unusual ring contraction of 4-chlorocoumarin to benzofuranoyl sulfoxonium ylides using a Corey-ylide. These stabilized ylides were subsequently utilized for the synthesis of various valuable bis-heterocycles under both metal and metal-free conditions. The synthetic utility of this method is illustrated through the synthesis of known bioactive compounds. Detailed mechanistic investigations and quantum chemical calculations have provided valuable insights into the mechanism of the ring contraction reaction.

Enzymatic peptide macrocyclization via indole-N-acylation

Indole N-acylation is chemically challenging, due to the low nucleophilicity of the indole nitrogen. Although a few similar transformations have been proposed in the biosynthesis of indole-containing natural products, their enzymatic basis remains elusive. Here, we show that BulbE TE is an N-acylindole-forming macrocyclase involved in the biosynthesis of the non-ribosomal cyclopeptide bulbiferamide. BulbE catalyzed macrocyclization not only via the indole nitrogen, but also via a primary amine and an alcohol. The uncommon catalytic residue Cys731 in BulbE TE was indispensable for the nucleophilic attack from the indole nitrogen. While the C731S variant failed to utilize the indole nitrogen and primary alcohol as nucleophiles, it retained the ability to employ the amine nucleophile, showing a clear correlation between the catalytic residues and the nucleophile scope. A model of the acyl-enzyme complex revealed how the substrate is recognized, including interactions involving a unique second lid-like structural motif in BulbE TE. This study provides an enzymatic basis for indole N-acylation and offers important insights into the nucleophile specificity in TE-mediated macrocyclization.

Asymmetric dearomative single-atom skeletal editing of indoles and pyrroles

Heterocycle skeletal editing has recently emerged as a powerful tactic for achieving heterocycle-to-heterocycle transmutation without the need for multistep de novo heterocycle synthesis. However, the enantioselective skeletal editing of heteroarenes through single-atom logic remains challenging. Here we report the enantiodivergent dearomative skeletal editing of indoles and pyrroles via an asymmetric carbon-atom insertion, using trifluoromethyl N-triftosylhydrazones as carbene precursors. This strategy provides a straightforward methodology to access enantiomerically enriched six-membered N-heterocycles containing a trifluoromethylated quaternary stereocentre from planar N-heteroarenes. The synthetic utility of this enantiodivergent methodology was demonstrated by a broad evaluation of reaction scope, product derivatization and concise syntheses of drug analogues. Mechanistic studies reveal that the excellent asymmetric induction arises from the initial cyclopropanation step. The asymmetric single-atom insertion strategy is expected to have a broad impact on the field of single-atom skeletal editing and catalytic asymmetric dearomatization of aromatic compounds.

One-Step Realization of Skeleton Editing, gem-Dinitromethyl Functionalization, and Zwitterionization in a Laser-Sensitive 1,3,4-Oxadiazole Energetic Molecule

The single-atom skeletal editing technology is an efficient method for constructing molecular skeletons, which has broad coverage in synthetic chemistry. However, its potential in the preparation of energetic heterocyclic molecules is grossly underexplored. In this work, an unexpected one-step reaction for the synthesis of novel energetic molecules was discovered which combines single-atom skeletal editing, gem-dinitromethyl functionalization, and zwitterionization in one step. The reaction demonstrates high efficiency while maintaining the characteristics of being mild and facile. The reaction mechanism was verified by experimental evidence and theoretical calculations. This reaction produces a novel energetic molecule (NPX-04) with good laser ignition performance, indicating its promise as a laser-sensitive energetic material.

A Formal 1,2-Stevens Rearrangement of Thioester Ylides as a Single-Atom Molecular Editing Tool

A rhodium-catalyzed reaction of thioesters with diazo reagents was recognized as a powerful and unprecedented tool for single-atom molecular editing by the insertion of a single carbon atom into the C(O)─S thioester bond, thereby leading to various α-thioketones possessing a quaternary carbon atom. A selective and precise defunctionalization of the polyfunctionalized products further demonstrated the synthetic utility of the reaction for the synthesis of more common structural classes of compounds.

Revolutionizing Playing with Skeleton Atoms: Molecular Editing Surgery in Medicinal Chemistry

Finding the most perfect drug candidates in the fields of drug discovery and medicinal chemistry will remain the main interest of drug designers. This concern necessitates organic and medicinal chemists, in most examples, to precisely design and search for drug candidates that are very analogous to the present effective drugs with solving, mainly, their proven critical pharmacological and clinical issues through slightly changing one or two atoms of the principal functional skeletons of the molecules of these present therapeutics by atom swapping, removal, and/or addition procedures in organic chemical synthesis. This accurate modern chemicosimilarity tactic in drug discovery surely saves time while keeping us very close, or sometimes highly superior, to the parent pharmacophoric bioactivity (i.e., keeping considerable analogy to the parent therapeutic molecule). From this perspective and logic, the science of skeletal editing of molecules (i.e., skeletal molecular editing) arose in the era of artificial intelligence (AI) and its dramatic predictions. As a pioneer in this modern branch in pharmaceutical and therapeutic organic chemistry, in this up-to-date minireview and perspective article, an attempt was made to introduce skeletal editing and its synthetic surgeries (over molecules) to the audience (including irrelevant readers) in a simpler and more attractive way as a novel chemical technology, highlighting the previous synthetic trials (in general), demonstrating the three main techniques, and, finally, discussing the future therapeutic needs and scenarios from a medicinal chemist's viewpoint.

Transforming an azaarene into the spine of fusedbicyclics via cycloaddition-induced scaffold hopping of 5-Hydroxypyrazoles

Skeleton editing for heteroarenes, especially pyrazoles, is challenging and remains scarce because these non-strained aromatics exhibit inert reactivities, making them relatively inactive for performing a dearomatization/cleavage sequence. Here, we disclose a cycloaddition-induced scaffold hopping of 5-hydroxypyrazoles to access the pyrazolopyridopyridazin-6-one skeleton through a single-operation protocol. By converting a five-membered aza-arene into a five-unit spine of a 6/6 fused-bicyclic, this work unlocks a ring-opening reactivity of the pyrazole core that involves a formal C = N bond cleavage while retaining the highly reactive N-N bond in the resulting product. A [4 + 2] cycloaddition of a temporarily dearomatized 5-hydroxypyrrole with an in situ generated aza-1,3-diene, followed by oxidative C-N bond cleavage, constitutes the domino pathway. A library of pyrazolopyridopyridazin-6-ones, which are medicinally relevant nitrogen-atom-rich tricyclics, is obtained efficiently from readily available materials.

Quinazolinone-to-Isoquinoline Metamorphosis by Ruthenium-Catalyzed [4+2] Annulation with Sulfoxonium Ylides

Molecular editing of quinazolinones to isoquinolines by a novel ruthenium-catalyzed [4+2] annulation with sulfoxonium ylides has been developed. The method permits the precise and rapid assembly of multisubstituted aminoisoquinolines, a class of heterocycles that play a privileged role in organic synthesis and pharmaceutical development. This new catalytic process exhibits novel programmability, including directed C-H acetylation, nucleophilic cyclization, and alcoholysis. Remarkably, various 2-arylquinazolinones and sulfoxonium ylides could be employed in excellent yields with broad functional group tolerance. This heterocycle-to-heterocycle protocol is compatible with green chemistry using an EtOH solvent and releasing H2O and dimethyl sulfoxide as byproducts.

Drugs from drugs: New chemical insights into a mature concept

Developing new drugs from marketed ones is a well-established and successful approach in drug discovery. We offer a unified view of this field, focusing on the new chemical aspects of the involved approaches: (a) chemical transformation of the original drugs (late-stage modifications, molecular editing), (b) prodrug strategies, and (c) repurposing as a tool to develop new hits/leads. Special focus is placed on the molecular structure of the drugs and their synthetic feasibility. The combination of experimental advances and new computational approaches, including artificial intelligence methods, paves the way for the evolution of the drugs from drugs concept.

Skeletal Editing via Transition-Metal-Catalyzed Nitrene Insertion

Metal-nitrenes are valuable reactive intermediates for synthesis and are widely used to construct biologically relevant scaffolds, complexes and functionalized molecules. The ring expansion of cyclic molecules via single-nitrogen-atom insertion via nitrene or metal-nitrenoid intermediates has emerged as a promising modern strategy for driving advantageous nitrogen-rich compound synthesis. In recent years, the catalytic insertion of a single nitrogen atom into carbocycles, leading to N-heterocycles, has become an important focus of modern synthetic approaches with applications in medicinal chemistry, materials science, and industry. Catalytic single-nitrogen-atom insertions have been increasing in prominence in modern organic synthesis due to their capability to construct high-value added nitrogen-containing heterocycles from simple feedstocks. In this review, we will discuss the rapidly growing field of skeletal editing via single-nitrogen-atom insertion using transition metal catalysis to access nitrogen-containing heterocycles, with a focus on nitrogen insertion across a wide spectrum of carbocycles.

Skeletal Editing of Energetic Materials: Acid-Catalyzed One-Step Synthesis of Bridged Triazoles as High-Energy-Density Materials via the Nef Reaction

Thermally stable insensitive energetic materials have captivated significant attention from the global research community due to their potential impact. In this study, a series of symmetric and asymmetric nitromethyl-bridged triazole compounds were synthesized from pyrimidine moieties via a skeletal editing approach. Additionally, carbonyl-bridged compounds were synthesized in a single step by using acid-catalyzed Nef reactions from their nitromethyl precursors. Peripheral modifications of pyrimidine resulted in fused energetic moieties. All synthesized compounds were fully characterized by using infrared spectroscopy, high-resolution mass spectrometry, multinuclear magnetic resonance spectroscopy, elemental analysis, and differential scanning calorimetry. Single-crystal X-ray diffraction analysis confirmed the structures of compounds 4 and 10. The newly synthesized moieties exhibit densities ranging from 1.75 to 1.86 g cm-3, detonation velocities between 8044 and 8608 m s-1, and detonation pressures between 23.10 and 30.31 GPa. Notably, compounds 9 and 10 demonstrate exceptional heat resistance, with decomposition temperatures of 315 and 335 °C, respectively. Computational studies, including density functional theory, quantum theory of atoms in molecules, noncovalent interactions, and electrostatic surface potential analysis, account for hydrogen-bonding and noncovalent interactions. This work highlights the potential of skeletal editing in the development of high-performing, thermally stable energetic materials.

Skeletal Editing of Aromatic N-Heterocycles via Hydroborative Cleavage of C-N Bonds-Scope, Mechanism, and Property

Skeletal editing of the core structure of heterocycles offers new opportunities for chemical construction and is a promising yet challenging research topic that has recently gained increasing interest. However, several limitations of the reported systems remain to be addressed. For example, the reagents employed are generally in high-energy, such as chlorocarbene precursors, nitrene species, and metal carbenes, which are also associated with low atomic efficiencies. Thus, the development of simple systems for the skeletal editing of heterocycles is still desired. Herein, a straightforward and facile BH3-mediated skeletal editing of readily available indoles, benzimidazoles, and several other aromatic heterocycles is reported. Structurally diverse products were readily obtained, including tetrahydrobenzo azaborinines, diazaboroles, O-anilinophenylethyl alcohols, benzene-1,2-diamines, and more. Density functional theory (DFT) calculations and natural bond orbital (NBO) analysis revealed a BH3-induced C-N bond cleavage reaction pathway. An exciting and counterintuitive indole hydroboration phenomenon of -BH2 shift from C3-position to C2-position was disclosed. Moreover, the photophysical properties of the synthesized diazaboroles were studied, and an interestingly and pronounced aggregation-induced emission (AIE) behavior was disclosed.

Halogencarbene-free Ciamician-Dennstedt single-atom skeletal editing

Single-atom skeletal editing is an increasingly powerful tool for scaffold hopping-based drug discovery. However, the insertion of a functionalized carbon atom into heteroarenes remains rare, especially when performed in complex chemical settings. Despite more than a century of research, Ciamician-Dennstedt (C-D) rearrangement remains limited to halocarbene precursors. Herein, we report a general methodology for the Ciamician-Dennstedt reaction using α-halogen-free carbenes generated in situ from N-triftosylhydrazones. This one-pot, two-step protocol enables the insertion of various carbenes, including those previously unexplored in C-D skeletal editing chemistry, into indoles/pyrroles scaffolds to access 3-functionalized quinolines/pyridines. Mechanistic studies reveal a pathway involving the intermediacy of a 1,4-dihydroquinoline intermediate, which could undergo oxidative aromatization or defluorinative aromatization to form different carbon-atom insertion products.

Denitrogenative Ring-Contraction of Pyridines to a Cyclopentadienyl Skeleton at a Dititanium Hydride Framework

Selective removal of the nitrogen atom from an aromatic N-heterocycle, such as pyridine, is of significant interest and importance, yet it remains highly challenging. Here, we report an unprecedented denitrogenative ring-contraction reaction of pyridines at a dititanium hydride framework, yielding cyclopentadienyl and nitride species under mild conditions. The reaction of pyridine with a dititanium tetrahydride complex (1) bearing rigid acridane-based PNP-pincer ligands at room temperature produced a cyclopentadienyl/nitride complex (2), in which the two Ti atoms are bridged by a nitride atom and one Ti atom is bonded to a cyclopentadienyl group formed by pyridine denitrogenation and ring-contraction. The reactions of 2-, 3-, and 4-methylpyridines with 1 under similar conditions yielded the same product (3), a methylcyclopentadienyl-ligated analog of 2. When 2,4- or 3,5-dimethylpyridine reacted with 1 at 60 °C, the 1,3-dimethylcyclopentadienyl-ligated analog (5) formed almost quantitatively. The mechanistic details have been elucidated by isolation of key intermediates and density functional theory calculations. It was revealed that the reaction proceeded via coordination of the N atom of a pyridine unit to a Ti atom in 1 followed by H2 release, C═N reduction, two C-N bond cleavage (ring-opening and denitrogenation), and C-C coupling (ring closing). The involvement of C-H activation in an isopropyl group of a PNP ligand at the later stages of the reaction significantly contributed to the stabilization of the denitrogenative ring-contraction product. This work not only provides unprecedented mechanistic insights into denitrogenation of aromatic N-heterocycles but also represents a novel example of skeletal editing of aromatic N-heterocycles.

Selective Upcycling of Polyolefins into High-Value Nitrogenated Chemicals

The selective upcycling of polyolefins to create products of increased value has emerged as an innovative approach to carbon resource stewardship, drawing significant scientific and industrial interest. Although recent advancements in recycling technology have facilitated the direct conversion of polyolefins to hydrocarbons or oxygenated compounds, the synthesis of nitrogenated compounds from such waste polyolefins has not yet been disclosed. Herein, we demonstrate a novel approach for the upcycling of waste polyolefins by efficiently transforming a range of postconsumer plastic products into nitriles and amides. This process leverages the catalytic properties of manganese dioxide in combination with an inexpensive nitrogen source, urea, to make it both practical and economically viable. Our approach not only opens new avenues for the creation of nitrogenated chemicals from polyolefin waste but also underscores the critical importance of recycling and valorizing carbon resources originally derived from fossil fuels. This study provides a new upcycling strategy for the sustainable conversion of waste polyolefins.

Molecular Editing of Pyrroles to Benzenes/Naphthalenes by N2O Deletion

A molecular editing reaction for converting pyrrole rings into benzene rings through a sequential pathway of Diels-Alder and cheletropic reactions was developed. The nitrogen atom in a N-bridged intermediate is eliminated in the form of N2O by a strain-releasing pathway, ultimately leading to the formation of substituted benzene and naphthalene derivatives.

Direct oxygen insertion into C-C bond of styrenes with air

Skeletal editing of single-atom insertion to basic chemicals has been demonstrated as an efficient strategy for the discovery of structurally diversified compounds. Previous endeavors in skeletal editing have successfully facilitated the insertion of boron, nitrogen, and carbon atoms. Given the prevalence of oxygen atoms in biologically active molecules, the direct oxygenation of C-C bonds through single-oxygen-atom insertion like Baeyer-Villiger reaction is of particular significance. Herein, we present an approach for the skeletal modification of styrenes using O2 via oxygen insertion, resulting in the formation of aryl ether frameworks under mild reaction conditions. The broad functional-group tolerance and the excellent chemo- and regioselectivity are demonstrated in this protocol. A preliminary mechanistic study indicates the potential involvement of 1,2-aryl radical migration in this reaction.

Electrochemical Skeletal Indole Editing via Nitrogen Atom Insertion by Sustainable Oxygen Reduction Reaction

Skeletal molecular editing gained considerable recent momentum and emerged as a uniquely powerful tool for late-stage diversifications. Thus far, superstoichiometric amounts of costly hypervalent iodine(III) reagents were largely required for skeletal indole editing. In contrast, we herein show that electricity enables sustainable nitrogen atom insertion reactions to give bio-relevant quinazoline scaffolds without stoichiometric chemical redox-waste product. The transition metal-free electro-editing was enabled by the oxygen reduction reaction (ORR) and proved robust on scale, while tolerating a variety of valuable functional groups.

Ring Contraction of Saturated Cyclic Amines and Rearrangement of Acyclic Amines Through Their Corresponding Hydroxylamines

Compared to modifications at the molecular periphery, skeletal adjustments present greater challenges. Within this context, skeletal rearrangement technology stands out for its significant advantages in rapidly achieving structural diversity. Yet, the development of this technology for ring contraction of saturated cyclic amines remains exceedingly rare. While most existing methods rely on specific substitution patterns to achieve ring contraction, there is a persistent demand for a more general strategy for substitution-free cyclic amines. To address this issue, we report a B(C6F5)3-catalyzed skeletal rearrangement of hydroxylamines with hydrosilanes. This methodology, when combined with the N-hydroxylation of amines, enables the regioselective ring contraction of cyclic amines and proves equally effective for rapid reorganization of acyclic amine skeletons. By this, the direct scaffold hopping of drug molecules and the strategic deletion of carbon atoms are achieved in a mild manner. Based on mechanistic experiments and density functional theory calculations, a possible mechanism for this process is proposed.

Lactone-to-Lactam Editing Alters the Pharmacology of Bilobalide

Precise transformations of natural products (NPs) can fine-tune their physicochemical properties while preserving inherently complex and evolutionarily optimized parent scaffolds. Here, we report an unprecedented lactone-to-lactam transformation on bilobalide, thus improving its stability and paving the way for biological exploration of previously inaccessible chemical space that is highly representative of the parent structure. This late-stage molecular editing of bilobalide enables facile access to a unique library of lactam analogues with altered pharmacology. Through phenotypic screening, we identify BB10 as a hit compound with unexpected inhibition of ferroptotic cell death. We further reveal that BB10 suppresses ferroptosis by restoring the expression of glutathione peroxidase 4 (GPX4) in brain cells. This study highlights that even subtle changes on NP scaffolds can confer new pharmacological properties, inspiring the exploration of simple yet critical transformations on complex NPs.

C3 Selective Hydroxylation of Pyridines via Photochemical Valence Isomerization of Pyridine N-Oxides

The C-H hydroxylation of the pyridine C3 position is a highly desirable transformation but remains a great challenge due to the inherent electronic properties of this heterocycle core which bring difficulties in chemical reactivity and regioselectivity. Herein we present an efficient method for formal C3 selective hydroxylation of pyridines via photochemical valence isomerization of pyridine N-oxides. This metal-free transformation features operational simplicity and compatibility with a diverse array of functional groups, and the resulting hydroxylated products are amenable to further elaboration to synthetically useful building blocks. The synthetic utility of this strategy is further demonstrated in the effective late-stage functionalization of pyridine-containing medicinally relevant molecules and versatile derivatizations of 3-pyridinols.

Silver-Catalyzed Single-Carbon Insertion of Indoles with Acetophenone N-Triftosylhydrazones

Here, we report a silver carbene-enabled single-carbon insertion reaction of indoles via a one-pot, two-step sequence to deliver a dearomative quaternary center quinoline scaffold in a modular fashion. Specifically, we used N-triftosylhydrazones as masked donor-donor carbene precursors that facilitate the insertion of carbon atoms bearing various functional groups to the library of functionalized quinoline. Experimental and DFT evidence support the transient presence of a cyclopropane species and removal of protecting groups.

Molecular Editing of Ketones through N-Heterocyclic Carbene and Photo Dual Catalysis

The molecular editing of ketones represents an appealing strategy due to its ability to maximize the structural diversity of ketone compounds in a straightforward manner. However, developing efficient methods for the arbitrary modification of ketonic molecules, particularly those integrated within complex skeletons, remains a significant challenge. Herein, we present a unique strategy for ketone recasting that involves radical acylation of pre-functionalized ketones facilitated by N-heterocyclic carbene and photo dual catalysis. This protocol features excellent substrate tolerance and can be applied to the convergent synthesis and late-stage functionalization of structurally complex bioactive ketones. Mechanistic investigations, including experimental studies and density functional theory (DFT) calculations, shed light on the reaction mechanism and elucidate the basis of the regioselectivity.

Retrosynthetic Simplicity

Retrosynthetic simplicity is introduced as a metric by which methods can be evaluated. An argument in favor of reactions which are retrosynthetically simple is put forward, and recent examples in the context of skeletal editing from my own laboratory as well as contributions from others are analyzed critically through this lens.

Visible light-induced chemoselective 1,2-diheteroarylation of alkenes

Visible-light photocatalysis has evolved as a powerful technique to enable controllable radical reactions. Exploring unique photocatalytic mode for obtaining new chemoselectivity and product diversity is of great significance. Herein, we present a photo-induced chemoselective 1,2-diheteroarylation of unactivated alkenes utilizing halopyridines and quinolines. The ring-fused azaarenes serve as not only substrate, but also potential precursors for halogen-atom abstraction for pyridyl radical generation in this photocatalysis. As a complement to metal catalysis, this photo-induced radical process with mild and redox neutral conditions assembles two different heteroaryl groups into alkenes regioselectively and contribute to broad substrates scope. The obtained products containing aza-arene units permit various further diversifications, demonstrating the synthetic utility of this protocol. We anticipate that this protocol will trigger the further advancement of photo-induced alkyl/aryl halides activation.

Selective nitrogen insertion into aryl alkanes

Molecular structure-editing through nitrogen insertion offers more efficient and ingenious pathways for the synthesis of nitrogen-containing compounds, which could benefit the development of synthetic chemistry, pharmaceutical research, and materials science. Substituted amines, especially nitrogen-containing alkyl heterocyclic compounds, are widely found in nature products and drugs. Generally, accessing these compounds requires multiple steps, which could result in low efficiency. In this work, a molecular editing strategy is used to realize the synthesis of nitrogen-containing compounds using aryl alkanes as starting materials. Using derivatives of O-tosylhydroxylamine as the nitrogen source, this method enables precise nitrogen insertion into the Csp2-Csp3 bond of aryl alkanes. Notably, further synthetic applications demonstrate that this method could be used to prepare bioactive molecules with good efficiency and modify the molecular skeleton of drugs. Furthermore, a plausible reaction mechanism involving the transformation of carbocation and imine intermediates has been proposed based on the results of control experiments.

A deconstruction-reconstruction strategy for pyrimidine diversification

Structure-activity relationship (SAR) studies are fundamental to drug and agrochemical development, yet only a few synthetic strategies apply to the nitrogen heteroaromatics frequently encountered in small molecule candidates1-3. Here we present an alternative approach in which we convert pyrimidine-containing compounds into various other nitrogen heteroaromatics. Transforming pyrimidines into their corresponding N-arylpyrimidinium salts enables cleavage into a three-carbon iminoenamine building block, used for various heterocycle-forming reactions. This deconstruction-reconstruction sequence diversifies the initial pyrimidine core and enables access to various heterocycles, such as azoles4. In effect, this approach allows heterocycle formation on complex molecules, resulting in analogues that would be challenging to obtain by other methods. We anticipate that this deconstruction-reconstruction strategy will extend to other heterocycle classes.

Carbene-Assisted Arene Ring-Opening

Despite the significant achievements in dearomatization and C-H functionalization of arenes, the arene ring-opening remains a largely unmet challenge and is underdeveloped due to the high bond dissociation energy and strong resonance stabilization energy inherent in aromatic compounds. Herein, we demonstrate a novel carbene assisted strategy for arene ring-opening. The understanding of the mechanism by our DFT calculations will stimulate wide application of bulk arene chemicals for the synthesis of value-added polyconjugated chain molecules. Various aryl azide derivatives now can be directly converted into valuable polyconjugated enynes, avoiding traditional synthesis including multistep unsaturated precursors, poor selectivity control, and subsequent transition-metal catalyzed cross-coupling reactions. The simple conditions required were demonstrated in the late-stage modification of complex molecules and fused ring compounds. This chemistry expands the horizons of carbene chemistry and provides a novel pathway for arene ring-opening.

Diversification of Naphthol Skeletons Triggered by Aminative Dearomatization

A silver-catalyzed aminative dearomatization of naphthols has been developed and integrated into a stepwise approach for subsequent skeletal diversifications including ring expansion, ring opening, ring contraction, and atom transmutation of aryl scaffolds. This approach enables the synthesis of a diverse array of azepinones, unsaturated amides, isoquinolines, and indenones from naphthol substrates. Its application in the synthesis of bioactive and functional molecules as well as the conversion of complex molecular skeletons underscores its broad potential applicability. Mechanistic investigations suggest the intermediacy of the dearomatized intermediates.

Controllable Skeletal and Peripheral Editing of Pyrroles with Vinylcarbenes

The skeletal editing of azaarenes through insertion, deletion, or swapping of single atoms has recently gained considerable momentum in chemical synthesis. Here, we describe a practical skeletal editing strategy using vinylcarbenes in situ generated from trifluoromethyl vinyl N-triftosylhydrazones, leading to the first dearomative skeletal editing of pyrroles through carbon-atom insertion. Furthermore, depending on the used catalyst and substrate, three types of peripheral editing reactions of pyrroles are also disclosed: α- or γ-selective C-H insertion, and [3+2] cycloaddition. These controllable molecular editing reactions provide a powerful platform for accessing medicinally relevant CF3-containing N-heterocyclic frameworks, such as 2,5-dihydropyridines, piperidines, azabicyclo[3.3.0]octadienes, and allylated pyrroles from readily available pyrroles. Mechanistic insights from experiments and density functional theory (DFT) calculations shed light on the origin of substrate- or catalyst-controlled chemo- and regioselectivity as well as the reaction mechanism.

Tunable molecular editing of indoles with fluoroalkyl carbenes

Building molecular complexity from simple feedstocks through precise peripheral and skeletal modifications is central to modern organic synthesis. Nevertheless, a controllable strategy through which both the core skeleton and the periphery of an aromatic heterocycle can be modified with a common substrate remains elusive, despite its potential to maximize structural diversity and applications. Here we report a carbene-initiated chemodivergent molecular editing of indoles that allows both skeletal and peripheral editing by trapping an electrophilic fluoroalkyl carbene generated in situ from fluoroalkyl N-triftosylhydrazones. A variety of fluorine-containing N-heterocyclic scaffolds have been efficiently achieved through tunable chemoselective editing reactions at the skeleton or periphery of indoles, including one-carbon insertion, C3 gem-difluoroolefination, tandem cyclopropanation and N1 gem-difluoroolefination, and cyclopropanation. The power of this chemodivergent molecular editing strategy has been highlighted through the modification of the skeleton or periphery of natural products in a controllable and chemoselective manner. The reaction mechanism and origins of the chemo- and regioselectivity have been probed by both experimental and theoretical methods.