Genome-Centric Metatranscriptomics Analysis Reveals the Role of Hydrochar in Anaerobic Digestion of Waste Activated Sludge

Microbial shifts in anaerobic digestion towards phenol inhibition with and without hydrochar as revealed by metagenomic binning

The inhibition of anaerobic digestion (AD) by phenolic compounds is an obstacle to the efficient treatment of organic wastes. Besides, hydrochar produced from hydrothermal liquefaction of biomass has been previously reported to enhance AD. The present study aimed to provide deep insights into the microbial shifts at the species level to phenol (0-1.5 g/L) inhibition in AD of glucose with and without hydrochar by metagenomic analysis. Phenol higher than 1 g/L had severe inhibition on both the amount and rate of methane production in control experiments, while hydrochar significantly enhanced methane production, especially at phenol 1 g/L and 1.5 g/L. From metagenomic analysis, 78 High-quality metagenome-assembled genomes (MAGs) were obtained. Principal components analysis showed that the microbial communities were shifted when phenol concentration was increased to 0.25 g/L in control experiments and 1 g/L in hydrochar experiments. In control experiments, no MAGs involved in acetogenesis were found at phenol 1.5 g/L and Methanothrix sp.FDU243 was also inhibited. However, hydrochar resulted in the maintenance of several MAGs involved in acetogenesis and Methanothrix sp.FDU243 even at phenol 1.5 g/L, ensuring a persistent methane production. Furthermore, 6 phenol-degrading MAGs were identified, shifting dependent on the concentrations of phenol and the presence of hydrochar.

Genome-centric metagenomics analysis revealed the metabolic function of abundant microbial communities in thermal hydrolysis-assisted thermophilic anaerobic digesters under propionate stress

The ecological roles of microbial communities and how they interact with each other in thermal hydrolysis process (THP) assisted thermophilic anaerobic digestion (THP-AD) reactors remain largely unknown, especially under propionate stress. Two thermophilic THP-AD reactors had methane yield of 240-248 mL/g VS_added, but accumulated approximately 2000 mg/L propionate. Genome-centric metagenomics analysis showed that 68 metagenome-assembled genomes (MAGs) were recovered, 32 MAGs of which were substantially enriched. Firmicutes spp. dominated the enriched microbial community, including hydrolytic/fermentative bacteria and syntrophs. Methanogenic activities were mainly mediated by Methanosarcina sp. and Methanothermobacter spp. In addition to hydrogenotrophic methanogens, Thermodesulfovibrio sp. could also be a vital H₂ scavenger, contributing to maintaining low H₂ partial pressure in the bioreactors. The remarkable accumulation of propionate could be likely attributed to the weak syntrophic propionate-oxidizing activity or its absence. These findings advanced our knowledge about the mutualistic symbiosis of carbon metabolism in thermophilic THP-AD reactors.

Recent advances in conductive materials amended anaerobic co-digestion of food waste and municipal organic solid waste: Roles, mechanisms, and potential application

Recently, conductive materials (i.e., carbon-based and iron-based materials) as a feasible and attractive approach have been introduced to anaerobic co-digestion (ACoD) system for promoting its performance and stability through direct interspecies electron transfer. Owing to the key roles of conductive materials in ACoD process, it is imperative to gain a profound understanding of their specific functions and mechanisms. Here, this review critically examined the state of the art of conductive materials assisted ACoD of food waste and common municipal organic solid waste. Then, the fundamental roles of conductive materials on ACoD enhancement and the relevant mechanisms were discussed. Last, the perspectives for co-digestate treatment, reutilization, and disposal were summarized. Moreover, the main challenges to conductive materials amended ACoD in on-site application were proposed and the future remarks were put forward. Collectively, this review poses a scientific basis for the potential application of conductive materials in ACoD process in the future.

Current challenges of hydrothermal treated wastewater (HTWW) for environmental applications and their perspectives: A review

Hydrothermal treatment (HT) is an emerged thermochemical approach for the utilization of biomass. In the last decade, intense research has been conducted on bio-oil and hydrochar, during which extensive amount of hydrothermal treated wastewater (HTWW) is produced, containing large amount of organic compounds along with several toxic chemicals. The composition of HTWW is highly dependent on the process conditions and organic composition of biomass, which determines its further utilization. The current study provides a comprehensive overview of recent advancements in HTWW utilization and its properties which can be changed by varying different parameters like temperature, residence time, solid concentration, mass ratio and catalyst including types of biomasses. HTWW characterization, parameters, reaction mechanism and its application were also summarized. By considering the challenges of HTWW, some suggestions and proposed methodology to overcome the bottleneck are provided.

Understanding the mechanisms behind enhanced anaerobic digestion of corn straw by humic acids

Humic acids (HAs) are abundant on earth, yet their effects on anaerobic digestion (AD) of cellulosic substrate are not fully uncovered. The effects of HAs on AD of corn straw and the mechanisms behind were analyzed in this study. Results showed that the effects of HAs on methane yield were closely related to the total solids (TS) content. At relative high TS content of 5.0%, HAs benefited AD process by increasing 13.8% of methane yield, accelerating methane production rate by 43% and shortening lag phase time by 37.5%. Microbial community analysis indicated that HAs increased the relative abundance of syntrophic bacteria (Syntrophomonadaceae and Synergistaceae), facilitating the degradation of volatile fatty acids. HAs might act as electron shuttles to directly transfer electrons to hydrogenotrophic methanogens for CO₂ reduction to CH₄. This study provides a simple and efficient strategy to facilitate the AD of cellulosic substrate by HAs addition.

Novel Long-Chain Fatty Acid (LCFA)-Degrading Bacteria and Pathways in Anaerobic Digestion Promoted by Hydrochar as Revealed by Genome-Centric Metatranscriptomics Analysis

A large amount of long-chain fatty acids (LCFA) are generated after lipids hydrolysis in anaerobic digestion (AD), and LCFA are difficult to be biodegraded. This study showed that hydrochar (HC), which was produced during the hydrothermal liquefaction of organic wastes, significantly increased the methane production rate (by 56.9%) of oleate, a typical refractory model LCFA. Genomic-centric metatranscriptomics analysis revealed that three novel microbes (Bin138 Spirochaetota sp., Bin35 Smithellaceae sp., and Bin54 Desulfomonilia sp.) that were capable of degrading LCFA were enriched by HC, which played an important role in the degradation of oleate. LCFA was degraded to acetate through the well-known LCFA β-oxidation pathway and the combined β-oxidation and butyrate oxidation pathway. In addition, it was found that HC promoted the direct interspecies electron transfer (DIET) between Methanothrix sp. and Bin54 Desulfomonilia sp. The enriched new types of LCFA-degrading bacteria and the promotion of DIET contributed to the improved methane production rate of oleate by HC. IMPORTANCE Long-chain fatty acids (LCFA) are difficult to be degraded in anaerobic digestion (AD), and the known LCFA degrading bacteria are only limited to the families Syntrophomonadaceae and Syntrophaceae. Here, we found that hydrochar effectively promoted AD of LCFA, and the new LCFA-degrading bacteria and a new metabolic pathway were also revealed based on genomic-centric metatranscriptomic analysis. This study provided a new method for enhancing the AD of organic wastes with high content of LCFA and increased the understanding of the microbes and their metabolic pathways involved in AD of LCFA.

Hormesis-Like Effects of Tetrabromobisphenol A on Anaerobic Digestion: Responses of Metabolic Activity and Microbial Community

Tetrabromobisphenol A (TBBPA) has extensive applications in various fields; its release into ecosystems and the potential toxic effects on organisms are becoming major concerns. Here, we investigated the effects of TBBPA on anaerobic digestion, whose process is closely related to the carbon cycles under anaerobic conditions. The results revealed that TBBPA exhibited dose-dependent hormesis-like effects on methane production from glucose, i.e., the presence of 0.1 mg/L TBBPA increased the methane production rate by 8.79%, but 1.0-4.0 mg/L TBBPA caused 3.45-28.98% of decrement. We found that TBBPA was bound by the tyrosine-like proteins of the extracellular polymeric substances of anaerobes and induced the increase of reactive oxygen species, whose slight accumulation stimulated the metabolism activities but high accumulation increased the apoptosis of anaerobes. Owing to the differences between individual anaerobes in tolerance, TBBPA at 0.1 mg/L stimulated the acidogenesis and hydrogenotrophic methanogenesis, whereas higher levels (i.e., 1.0-4.0 mg/L) severely restrained all of the processes of acidogenesis, acetogenesis, and methanogenesis. Along with the accumulation of bisphenol A (BPA) produced from TBBPA by Longilinea sp. and Pseudomonas sp., the methanogenic pathway was partly shifted from acetate-dependent to hydrogen-dependent direction, and the activities of carbon monoxide dehydrogenase and acetyl-CoA decarbonylase/synthase were inhibited, while acetate kinase and F420 were hormetically affected. These findings elucidated the mechanism of anaerobic syntrophic consortium responses to TBBPA, supplementing the potential environmental risks of brominated flame retardants.

Effect of magnetite addition on transcriptional profiles of syntrophic Bacteria and Archaea during anaerobic digestion of propionate in wastewater sludge

Anaerobic digestion (AD) is an important technology for the effective conversion of waste and wastewater to methane. Here, syntrophic bacteria transfer molecular hydrogen (H₂ ), formate, or directly supply electrons (direct interspecies electron transfer, DIET) to the methanogens. Evidence is accumulating that the methanation of short-chain fatty acids can be enhanced by the addition of conductive material to the anaerobic digester, which has often been attributed to the stimulation of DIET. Since little is known about the transcriptional response of a complex AD microbial community to the addition of conductive material, we added magnetite to propionate-fed laboratory-scale reactors that were inoculated with wastewater sludge. Compared to the control reactors, the magnetite-amended reactors showed improved methanation of propionate. A genome-centric metatranscriptomics approach identified the active SCFA-oxidizing bacteria that affiliated with Firmicutes, Desulfobacterota and Cloacimonadota. The transcriptional profiles revealed that the syntrophic bacteria transferred acetate, H₂ and formate to acetoclastic and hydrogenotrophic methanogens, whereas transcription of potential determinants for DIET such as conductive pili and outer-membrane cytochromes did not significantly change with magnetite addition. Overall, changes in the transcriptional profiles of syntrophic Bacteria and Archaea in propionate-fed lab-scale reactors amended with magnetite refute a major role of DIET in the studied system.

Cyanophycin Granule Polypeptide: a Neglected High Value-Added Biopolymer, Synthesized in Activated Sludge on a Large Scale

Recovery of microbial synthetic polymers with high economic value and market demand in activated sludge has attracted extensive attention. This work analyzed the synthesis of cyanophycin granule peptide (CGP) in activated sludge and its adsorption capacity for heavy metals and dyes. The distribution and expression of synthetic genes for eight biopolymers in two wastewater treatment plants (WWTPs) were analyzed by metagenomics and metatranscriptomics. The results indicate that the abundance and expression level of CGP synthase (cphA) are similar to those of polyhydroxyalkanoate polymerase, implying high synthesis of CGP in activated sludges. CGP in activated sludge is mainly polymerized from aspartic acid and arginine, and its secondary structure is mainly β-sheet. The crude yields of CGP are as high as 104 ± 26 and 76 ± 13 mg/g dry sludge in winter and in summer, respectively, comparable to those of polyhydroxyalkanoate and alginate. CGP has a stronger adsorption capacity for anionic pollutants (Cr (VI) and methyl orange) than for cationic pollutants because it is rich in guanidine groups. This study highlights prospects for recovery and application of CGP from WWTPs. IMPORTANCE The conversion of organic pollutants into bioresources by activated sludge can reduce the carbon dioxide emission of wastewater treatment plants. Identification of new high value-added biopolymers produced by activated sludge is beneficial to recover bioresources. Cyanophycin granule polypeptide (CGP), first discovered in cyanobacteria, has unique chemical and material properties suitable for industrial food, medicine, cosmetics, water treatment, and agriculture applications. Here, we revealed for the first time that activated sludge has a remarkable ability to produce CGP. These findings could further facilitate the conversion of wastewater treatment plants into resource recycling plants.

A review on anaerobic membrane bioreactors for enhanced valorization of urban organic wastes: Achievements, limitations, energy balance and future perspectives

Sustainable urban development is threatened by an impending energy crisis and large amounts of organic wastes generated from the municipal sector among others. Conventional waste management methods involve greenhouse gas (GHG) emission and limited resource recovery, thus necessitating advanced techniques to convert such wastes into bioenergy, bio-fertilizers and valuable-added products. Research and application experiences from different scale applications indicate that the anaerobic membrane bioreactor (AnMBR) process is a kind of high-rate anaerobic digester for urban organic wastes valorization including food waste and waste sludge, while the research status is still insufficiently summarized. Through compiling recent achievements and literature, this review will focus on the following aspects, including AnMBR treatment performance and membrane fouling, technical limitations, energy balance and techno-economic assessment as well as future perspectives. AnMBR can enhance organic wastes treatment via complete retention of functional microbes and suspended solids, and timely separation of products and potential inhibitory substances, thus improving digestion efficiency in terms of increased organics degradation rates, biogas production and process robustness at a low footprint. When handling high-solid organic wastes, membrane fouling and mass transfer issues can be the challenges limiting AnMBR applications to a wet-type digestion, thus countermeasures are required to pursue extended implementations. A conceptual framework is proposed by taking various organic wastes disposal and final productions (permeate, biogas and biosolids) utilization into consideration, which will contribute to the development of AnMBR-based waste-to-resource facilities towards sustainable waste management and more economic-environmental benefits output.

Perspectives on Microbial Electron Transfer Networks for Environmental Biotechnology

The overlap of microbiology and electrochemistry provides plenty of opportunities for a deeper understanding of the redox biogeochemical cycle of natural-abundant elements (like iron, nitrogen, and sulfur) on Earth. The electroactive microorganisms (EAMs) mediate electron flows outward the cytomembrane via diverse pathways like multiheme cytochromes, bridging an electronic connection between abiotic and biotic reactions. On an environmental level, decades of research on EAMs and the derived subject termed “electromicrobiology” provide a rich collection of multidisciplinary knowledge and establish various bioelectrochemical designs for the development of environmental biotechnology. Recent advances suggest that EAMs actually make greater differences on a larger scale, and the metabolism of microbial community and ecological interactions between microbes play a great role in bioremediation processes. In this perspective, we propose the concept of microbial electron transfer network (METN) that demonstrates the “species-to-species” interactions further and discuss several key questions ranging from cellular modification to microbiome construction. Future research directions including metabolic flux regulation and microbes–materials interactions are also highlighted to advance understanding of METN for the development of next-generation environmental biotechnology.

Promoting biomethane production from propionate with Fe2O3@carbon nanotubes composites

Using a batch anaerobic system constructed with 60 mL serum bottles, potential of a composite material with Fe₂O₃ nanoparticles decorated on carbon nanotubes (CNTs) to enhance biomethane production was investigated. The composites (Fe₂O₃@CNTs) with well dispersed Fe₂O₃ nanoparticles (4.5 nm) were fabricated by a facile thermal decomposition method in a muffle furnace under nitrogen atmosphere. Compared with Fe₂O₃, Fe₂O₃@CNTs showed a large specific surface area and good electrical conductivity. Supplementation of Fe₂O₃@CNTs to the propionate-degrading enrichments enhanced the methane production rate, which was 10.4-fold higher than that in the control experiment without material addition. The addition of Fe₂O₃@CNTs also not only showed a clearly electrochemical response to flavin and cytochrome C, but also reduced the electron transfer resistance when compared to the control. Comparative analysis showed that Fe₂O₃ in Fe₂O₃@CNTs played a key role in initiating electrochemical response and triggering rapid methane production, while CNTs functioned as rapid electron conduits to facilitate electron transfer from iron-reducing bacteria (e.g., Acinetobacter, Syntrophomonas, and Geobacter) to methanogens (e.g. Methanosarcina).

Role and significance of water and acid washing on biochar for regulating methane production from waste activated sludge

Methane recovered from anaerobic digestion of waste activated sludge (WAS) can be used as the energy supplement of the wastewater treatment plant, benefiting to its carbon-neutral operation. In order to enhance methane production, biochar (BC) has been widely selected as conductive material to build direct interspecies electron transfer (DIET) in anaerobic digestion of WAS. However, the role and significance of washing strategies, including water and acid washing, on BCs for regulating methane production have not been reported. This study selected the frequently used woody- (W) and straw (S)-BCs as mode. Compared to raw W-BC, water and acid washing W-BC increased the methane yields by 19.1% and 15.7%, respectively. Differently, the methane yields among raw, water and acid washing S-BCs were similar. Mechanism study showed that both the two washing strategies optimized the properties of raw W-BC for promoting methane production. Water and acid washing W-BCs increased the electron transfer functional groups, such as ketones and quinones, which were not observed in S-BCs. Moreover, the electron-active microorganisms were enriched with the presence of water and acid washing W-BCs, and the predominant pathway for methane production shifted from hydrogentrophic to acetotrophic and DIET methanogenesis, while the microbial communities, including bacteria and archaea, were similar with the presence of raw, water and acid washing S-BCs. These findings of this work provide some new insights for production improvement regulation of methane from anaerobic digestion of wastes induced by BCs.

Modification of hydrochar increased the capacity to promote anaerobic digestion

Hydrochar has been demonstrated to increase methane production rate during anaerobic digestion (AD) of organic wastes/wastewater by facilitating direct interspecies electron transfer (DIET). The present study compared the hydrochars prepared at different conditions (260 °C-1 h, 260 °C-8 h, 320 °C-1 h and 320 °C-8 h) on AD of glucose. Hydrochar prepared at lower temperature and residence time (260 °C-1 h) resulted in the highest methane production rate, which was 237% higher of control experiment without hydrochar. Modification of hydrochar (260 °C-1 h) by ball-milling further increased the capacity to increase methane production rate. Hydrothermal liquefaction (HTL) conditions affected the surface oxygen-containing functional groups that related with DIET, and hydrochar (260 °C-1 h) had higher peaks relating with C-O and O-H functional groups. Ball-milling enhanced the formation of such groups. Microbial analysis showed hydrochar (260 °C-1 h) by ball-milling resulted in the formation of different microbial communities as compared with control experiments, and Azospira and Methanosarcina were enriched, which might be involved in DIET.

Combined microbial transcript and metabolic analysis reveals the different roles of hydrochar and biochar in promoting anaerobic digestion of waste activated sludge

Hydrothermal pretreatment of waste activated sludge (WAS) could eliminate the rate limiting step of anaerobic digestion (AD) -hydrolysis. However, the high organic loading rate may cause acid accumulation, thus leading to an unstable system. This study compared the effect of different hydrochar (HC2-260°C and HC3-320°C) and biochar (BC5-500°C and BC7-700°C) on AD of hydrothermal pretreated WAS (HPS). Results demonstrated that hydrochar was superior to biochar in the methane yield and production rate, especially HC2. HC2 had the highest surface oxygen-containing functional groups that could facilitate direct interspecies electron transfer (DIET). The enhanced methane yield was related with the increased protein utilization, and hydrochar and biochar enriched different microbes related to protein degradation. Metabolomic analysis showed the significantly changed metabolites induced by hydrochar and biochar were involved in fatty acids and amino acids-related metabolism, indicating the rapid conversion of intermediated products, which was consistent with the microbial community structure results. Hydrochar and biochar also induced upregulation of metabolites related to microbial metabolic activity and extracellular electron transfer. Although biochar induced the same metabolic changes, the alterations of these metabolites were weaker than those of hydrochar. The results of this study offered new insights into the molecular mechanisms of enhanced AD of HPS by hydrochar and biochar.

Phenol promoted caproate production via two-stage batch anaerobic fermentation of organic substance with ethanol as electron donor for chain elongation

The conversion of organic wastes/wastewater into medium chain fatty acids (MCFAs) such as caproate has attracted much attention, while the effects of toxic compounds on the process have rarely been studied. The present study investigated the effects of phenol (0-1.5 g/L), which is a toxicant and present in various organic wastes, on the caproate production in the chain elongation (CE) process with ethanol as electron donor via two-stage batch anaerobic fermentation of glucose. The results showed phenol ≤ 1 g/L did not affect short chain fatty acids (SCFAs) production, while 1 g/L phenol increased caproate production by 59.9% in the following CE process. The higher selectivity of caproate and higher consumption of ethanol contributed to the higher caproate production at 1 g/L phenol. It was also shown 1 g/L phenol had more positive effect on CE of butyrate than acetate. 1.5 g/L phenol inhibited both SCFAs production and CE processes. 16S rRNA genes analysis showed phenol had slight effect on the microbial communities for SCFAs production, while it obviously changed the dominant microbes in CE process. For CE process, metagenomic analysis was further conducted and phenol mainly affected fatty acid biosynthesis (FAB) pathway, but not reverse β-oxidization (RBO) pathway. 1 g/L phenol increased the abundances of genes in FAB pathway, which could be related with the higher caproate production. Genome reconstruction identified the dominant microbial species in CE process, which were changed with different concentrations of phenol. Most of the dominant species were new microbial species potentially involved in CE. The syntrophic cooperation between Petrimonas mucosa FDU058 and Methanofollis sp. FDU007 might play important role in increased caproate production at 1 g/L phenol, and their adaption to phenol could be due to the presence of genes relating with active efflux system and refolding of proteins.