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For: Dinman JD, Ruiz-Echevarria MJ, Czaplinski K, Peltz SW. Peptidyl-transferase inhibitors have antiviral properties by altering programmed -1 ribosomal frameshifting efficiencies: development of model systems. Proc Natl Acad Sci U S A 1997;94:6606-11. [PMID: 9192612 PMCID: PMC21205 DOI: 10.1073/pnas.94.13.6606] [Citation(s) in RCA: 80] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
Number Cited by Other Article(s)
51
Léger M, Sidani S, Brakier-Gingras L. A reassessment of the response of the bacterial ribosome to the frameshift stimulatory signal of the human immunodeficiency virus type 1. RNA (NEW YORK, N.Y.) 2004;10:1225-35. [PMID: 15247429 PMCID: PMC1370612 DOI: 10.1261/rna.7670704] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2004] [Accepted: 05/12/2004] [Indexed: 05/18/2023]
52
Plant EP, Wang P, Jacobs JL, Dinman JD. A programmed -1 ribosomal frameshift signal can function as a cis-acting mRNA destabilizing element. Nucleic Acids Res 2004;32:784-90. [PMID: 14762205 PMCID: PMC373365 DOI: 10.1093/nar/gkh256] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
53
Meskauskas A, Harger JW, Jacobs KLM, Dinman JD. Decreased peptidyltransferase activity correlates with increased programmed -1 ribosomal frameshifting and viral maintenance defects in the yeast Saccharomyces cerevisiae. RNA (NEW YORK, N.Y.) 2003;9:982-92. [PMID: 12869709 PMCID: PMC1240118 DOI: 10.1261/rna.2165803] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2002] [Accepted: 05/22/2003] [Indexed: 05/20/2023]
54
Brierley I, Pennell S. Structure and function of the stimulatory RNAs involved in programmed eukaryotic-1 ribosomal frameshifting. COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 2003;66:233-48. [PMID: 12762025 DOI: 10.1101/sqb.2001.66.233] [Citation(s) in RCA: 72] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
55
Meskauskas A, Baxter JL, Carr EA, Yasenchak J, Gallagher JEG, Baserga SJ, Dinman JD. Delayed rRNA processing results in significant ribosome biogenesis and functional defects. Mol Cell Biol 2003;23:1602-13. [PMID: 12588980 PMCID: PMC151716 DOI: 10.1128/mcb.23.5.1602-1613.2003] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
56
Choi J, Xu Z, Ou JH. Triple decoding of hepatitis C virus RNA by programmed translational frameshifting. Mol Cell Biol 2003;23:1489-97. [PMID: 12588970 PMCID: PMC151691 DOI: 10.1128/mcb.23.5.1489-1497.2003] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2002] [Revised: 08/21/2002] [Accepted: 11/27/2002] [Indexed: 11/20/2022]  Open
57
Plant EP, Jacobs KLM, Harger JW, Meskauskas A, Jacobs JL, Baxter JL, Petrov AN, Dinman JD. The 9-A solution: how mRNA pseudoknots promote efficient programmed -1 ribosomal frameshifting. RNA (NEW YORK, N.Y.) 2003;9:168-74. [PMID: 12554858 PMCID: PMC1237042 DOI: 10.1261/rna.2132503] [Citation(s) in RCA: 129] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
58
Srivastava R, Lal SK. A yeast assay for high throughput screening of natural anti-viral agents. Biochem Biophys Res Commun 2003;301:218-21. [PMID: 12535665 DOI: 10.1016/s0006-291x(02)02995-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
59
Harger JW, Meskauskas A, Dinman JD. An "integrated model" of programmed ribosomal frameshifting. Trends Biochem Sci 2002;27:448-54. [PMID: 12217519 DOI: 10.1016/s0968-0004(02)02149-7] [Citation(s) in RCA: 81] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
60
Goss Kinzy T, Harger JW, Carr-Schmid A, Kwon J, Shastry M, Justice M, Dinman JD. New targets for antivirals: the ribosomal A-site and the factors that interact with it. Virology 2002;300:60-70. [PMID: 12202206 DOI: 10.1006/viro.2002.1567] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
61
Dinman JD, Richter S, Plant EP, Taylor RC, Hammell AB, Rana TM. The frameshift signal of HIV-1 involves a potential intramolecular triplex RNA structure. Proc Natl Acad Sci U S A 2002;99:5331-6. [PMID: 11959986 PMCID: PMC122769 DOI: 10.1073/pnas.082102199] [Citation(s) in RCA: 63] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
62
Meskauskas A, Dinman JD. Ribosomal protein L5 helps anchor peptidyl-tRNA to the P-site in Saccharomyces cerevisiae. RNA (NEW YORK, N.Y.) 2001;7:1084-96. [PMID: 11497428 PMCID: PMC1307509 DOI: 10.1017/s1355838201001480] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
63
Paul CP, Barry JK, Dinesh-Kumar SP, Brault V, Miller WA. A sequence required for -1 ribosomal frameshifting located four kilobases downstream of the frameshift site. J Mol Biol 2001;310:987-99. [PMID: 11502008 DOI: 10.1006/jmbi.2001.4801] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
64
Harger JW, Meskauskas A, Nielsen J, Justice MC, Dinman JD. Ty1 retrotransposition and programmed +1 ribosomal frameshifting require the integrity of the protein synthetic translocation step. Virology 2001;286:216-24. [PMID: 11448174 DOI: 10.1006/viro.2001.0997] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
65
Giedroc DP, Theimer CA, Nixon PL. Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting. J Mol Biol 2000;298:167-85. [PMID: 10764589 PMCID: PMC7126452 DOI: 10.1006/jmbi.2000.3668] [Citation(s) in RCA: 180] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
66
Nixon PL, Giedroc DP. Energetics of a strongly pH dependent RNA tertiary structure in a frameshifting pseudoknot. J Mol Biol 2000;296:659-71. [PMID: 10669615 DOI: 10.1006/jmbi.1999.3464] [Citation(s) in RCA: 72] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
67
Brunelle MN, Payant C, Lemay G, Brakier-Gingras L. Expression of the human immunodeficiency virus frameshift signal in a bacterial cell-free system: influence of an interaction between the ribosome and a stem-loop structure downstream from the slippery site. Nucleic Acids Res 1999;27:4783-91. [PMID: 10572179 PMCID: PMC148779 DOI: 10.1093/nar/27.24.4783] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
68
Napthine S, Liphardt J, Bloys A, Routledge S, Brierley I. The role of RNA pseudoknot stem 1 length in the promotion of efficient -1 ribosomal frameshifting. J Mol Biol 1999;288:305-20. [PMID: 10329144 PMCID: PMC7126229 DOI: 10.1006/jmbi.1999.2688] [Citation(s) in RCA: 69] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
69
Liphardt J, Napthine S, Kontos H, Brierley I. Evidence for an RNA pseudoknot loop-helix interaction essential for efficient -1 ribosomal frameshifting. J Mol Biol 1999;288:321-35. [PMID: 10329145 PMCID: PMC7141562 DOI: 10.1006/jmbi.1999.2689] [Citation(s) in RCA: 65] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
70
Hammell AB, Taylor RC, Peltz SW, Dinman JD. Identification of Putative Programmed −1 Ribosomal Frameshift Signals in Large DNA Databases. Genome Res 1999. [DOI: 10.1101/gr.9.5.417] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
71
Wilson GM, Brewer G. Slip-Sliding the Frame: Programmed −1 Frameshifting on Eukaryotic Transcripts. Genome Res 1999. [DOI: 10.1101/gr.9.5.393] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
72
Hammell AB, Taylor RC, Peltz SW, Dinman JD. Identification of putative programmed -1 ribosomal frameshift signals in large DNA databases. Genome Res 1999;9:417-27. [PMID: 10330121 PMCID: PMC310776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
73
Peltz SW, Hammell AB, Cui Y, Yasenchak J, Puljanowski L, Dinman JD. Ribosomal protein L3 mutants alter translational fidelity and promote rapid loss of the yeast killer virus. Mol Cell Biol 1999;19:384-91. [PMID: 9858562 PMCID: PMC83896 DOI: 10.1128/mcb.19.1.384] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
74
Ruiz-Echevarría MJ, Yasenchak JM, Han X, Dinman JD, Peltz SW. The upf3 protein is a component of the surveillance complex that monitors both translation and mRNA turnover and affects viral propagation. Proc Natl Acad Sci U S A 1998;95:8721-6. [PMID: 9671745 PMCID: PMC21143 DOI: 10.1073/pnas.95.15.8721] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/1998] [Indexed: 02/08/2023]  Open
75
Hung M, Patel P, Davis S, Green SR. Importance of ribosomal frameshifting for human immunodeficiency virus type 1 particle assembly and replication. J Virol 1998;72:4819-24. [PMID: 9573247 PMCID: PMC110024 DOI: 10.1128/jvi.72.6.4819-4824.1998] [Citation(s) in RCA: 104] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/1997] [Accepted: 02/17/1998] [Indexed: 02/07/2023]  Open
76
Benard L, Carroll K, Valle RC, Wickner RB. Ski6p is a homolog of RNA-processing enzymes that affects translation of non-poly(A) mRNAs and 60S ribosomal subunit biogenesis. Mol Cell Biol 1998;18:2688-96. [PMID: 9566888 PMCID: PMC110648 DOI: 10.1128/mcb.18.5.2688] [Citation(s) in RCA: 52] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]  Open
77
Ribas JC, Wickner RB. The Gag domain of the Gag-Pol fusion protein directs incorporation into the L-A double-stranded RNA viral particles in Saccharomyces cerevisiae. J Biol Chem 1998;273:9306-11. [PMID: 9535925 DOI: 10.1074/jbc.273.15.9306] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
78
Dinman JD, Ruiz-Echevarria MJ, Peltz SW. Translating old drugs into new treatments: ribosomal frameshifting as a target for antiviral agents. Trends Biotechnol 1998;16:190-6. [PMID: 9586242 PMCID: PMC7127214 DOI: 10.1016/s0167-7799(97)01167-0] [Citation(s) in RCA: 76] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
79
Cui Y, Dinman JD, Kinzy TG, Peltz SW. The Mof2/Sui1 protein is a general monitor of translational accuracy. Mol Cell Biol 1998;18:1506-16. [PMID: 9488467 PMCID: PMC108865 DOI: 10.1128/mcb.18.3.1506] [Citation(s) in RCA: 63] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
80
Tumer NE, Parikh BA, Li P, Dinman JD. The pokeweed antiviral protein specifically inhibits Ty1-directed +1 ribosomal frameshifting and retrotransposition in Saccharomyces cerevisiae. J Virol 1998;72:1036-42. [PMID: 9444997 PMCID: PMC124575 DOI: 10.1128/jvi.72.2.1036-1042.1998] [Citation(s) in RCA: 49] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
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