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For: Adkins JN, Mottaz HM, Norbeck AD, Gustin JK, Rue J, Clauss TRW, Purvine SO, Rodland KD, Heffron F, Smith RD. Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions. Mol Cell Proteomics 2006;5:1450-61. [PMID: 16684765 DOI: 10.1074/mcp.m600139-mcp200] [Citation(s) in RCA: 97] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]  Open
Number Cited by Other Article(s)
51
Ethanolamine utilization contributes to proliferation of Salmonella enterica serovar Typhimurium in food and in nematodes. Appl Environ Microbiol 2010;77:281-90. [PMID: 21037291 DOI: 10.1128/aem.01403-10] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]  Open
52
Discovery of novel secreted virulence factors from Salmonella enterica serovar Typhimurium by proteomic analysis of culture supernatants. Infect Immun 2010;79:33-43. [PMID: 20974834 DOI: 10.1128/iai.00771-10] [Citation(s) in RCA: 99] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
53
Webb-Robertson BJM, Cannon WR, Oehmen CS, Shah AR, Gurumoorthi V, Lipton MS, Waters KM. A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics. Bioinformatics 2010;26:1677-83. [PMID: 20568665 DOI: 10.1093/bioinformatics/btq251] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
54
Kim K, Yang E, Vu GP, Gong H, Su J, Liu F, Lu S. Mass spectrometry-based quantitative proteomic analysis of Salmonella enterica serovar Enteritidis protein expression upon exposure to hydrogen peroxide. BMC Microbiol 2010;10:166. [PMID: 20529336 PMCID: PMC2897801 DOI: 10.1186/1471-2180-10-166] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2009] [Accepted: 06/08/2010] [Indexed: 11/10/2022]  Open
55
Loss of the response regulator CtrA causes pleiotropic effects on gene expression but does not affect growth phase regulation in Rhodobacter capsulatus. J Bacteriol 2010;192:2701-10. [PMID: 20363938 DOI: 10.1128/jb.00160-10] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
56
Adkins JN, Mottaz H, Metz TO, Ansong C, Manes NP, Smith RD, Heffron F. Performing comparative peptidomics analyses of Salmonella from different growth conditions. Methods Mol Biol 2010;615:13-27. [PMID: 20013197 DOI: 10.1007/978-1-60761-535-4_2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
57
Kint G, Fierro C, Marchal K, Vanderleyden J, De Keersmaecker SCJ. Integration of ‘omics’ data: does it lead to new insights into host–microbe interactions? Future Microbiol 2010;5:313-28. [DOI: 10.2217/fmb.10.1] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]  Open
58
Windle HJ, Brown PA, Kelleher DP. Proteomics of bacterial pathogenicity: therapeutic implications. Proteomics Clin Appl 2010;4:215-27. [PMID: 21137045 DOI: 10.1002/prca.200900145] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2009] [Revised: 10/13/2009] [Accepted: 10/19/2009] [Indexed: 01/04/2023]
59
Auberry KJ, Kiebel GR, Monroe ME, Adkins JN, Anderson GA, Smith RD. Omics.pnl.gov: A Portal for the Distribution and Sharing of Multi-Disciplinary Pan-Omics Information. ACTA ACUST UNITED AC 2010;3:1-4. [PMID: 20585472 DOI: 10.4172/jpb.1000114] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
60
Charles RC, Harris JB, Chase MR, Lebrun LM, Sheikh A, LaRocque RC, Logvinenko T, Rollins SM, Tarique A, Hohmann EL, Rosenberg I, Krastins B, Sarracino DA, Qadri F, Calderwood SB, Ryan ET. Comparative proteomic analysis of the PhoP regulon in Salmonella enterica serovar Typhi versus Typhimurium. PLoS One 2009;4:e6994. [PMID: 19746165 PMCID: PMC2736619 DOI: 10.1371/journal.pone.0006994] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2009] [Accepted: 07/24/2009] [Indexed: 12/20/2022]  Open
61
Shi L, Ansong C, Smallwood H, Rommereim L, McDermott JE, Brewer HM, Norbeck AD, Taylor RC, Gustin JK, Heffron F, Smith RD, Adkins JN. Proteome of Salmonella Enterica Serotype Typhimurium Grown in a Low Mg/pH Medium. ACTA ACUST UNITED AC 2009;2:388-397. [PMID: 19953200 DOI: 10.4172/jpb.1000099] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
62
Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation. Appl Environ Microbiol 2009;75:6591-9. [PMID: 19717633 DOI: 10.1128/aem.01064-09] [Citation(s) in RCA: 116] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
63
Chowdhury SM, Shi L, Yoon H, Ansong C, Rommereim LM, Norbeck AD, Auberry KJ, Moore RJ, Adkins JN, Heffron F, Smith RD. A method for investigating protein-protein interactions related to salmonella typhimurium pathogenesis. J Proteome Res 2009;8:1504-14. [PMID: 19206470 DOI: 10.1021/pr800865d] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
64
Proteomic investigation of the time course responses of RAW 264.7 macrophages to infection with Salmonella enterica. Infect Immun 2009;77:3227-33. [PMID: 19528222 DOI: 10.1128/iai.00063-09] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]  Open
65
Taylor RC, Singhal M, Weller J, Khoshnevis S, Shi L, McDermott J. A network inference workflow applied to virulence-related processes in Salmonella typhimurium. Ann N Y Acad Sci 2009;1158:143-58. [PMID: 19348639 DOI: 10.1111/j.1749-6632.2008.03762.x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
66
Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction. BMC SYSTEMS BIOLOGY 2009;3:38. [PMID: 19356237 PMCID: PMC2678070 DOI: 10.1186/1752-0509-3-38] [Citation(s) in RCA: 116] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/04/2008] [Accepted: 04/08/2009] [Indexed: 01/10/2023]
67
Ansong C, Yoon H, Porwollik S, Mottaz-Brewer H, Petritis BO, Jaitly N, Adkins JN, McClelland M, Heffron F, Smith RD. Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation. PLoS One 2009;4:e4809. [PMID: 19277208 PMCID: PMC2652828 DOI: 10.1371/journal.pone.0004809] [Citation(s) in RCA: 102] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2008] [Accepted: 02/02/2009] [Indexed: 11/19/2022]  Open
68
Yoon H, McDermott JE, Porwollik S, McClelland M, Heffron F. Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium. PLoS Pathog 2009;5:e1000306. [PMID: 19229334 PMCID: PMC2639726 DOI: 10.1371/journal.ppat.1000306] [Citation(s) in RCA: 116] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2008] [Accepted: 01/22/2009] [Indexed: 11/18/2022]  Open
69
Rodland KD, Adkins JN, Ansong C, Chowdhury S, Manes NP, Shi L, Yoon H, Smith RD, Heffron F. Use of high-throughput mass spectrometry to elucidate host-pathogen interactions in Salmonella. Future Microbiol 2009;3:625-34. [PMID: 19072180 DOI: 10.2217/17460913.3.6.625] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
70
Sonck KAJ, Kint G, Schoofs G, Vander Wauven C, Vanderleyden J, De Keersmaecker SCJ. The proteome of Salmonella Typhimurium grown under in vivo-mimicking conditions. Proteomics 2009;9:565-79. [DOI: 10.1002/pmic.200700476] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
71
Bottlenecks and Hubs in Inferred Networks Are Important for Virulence in Salmonella typhimurium. J Comput Biol 2009;16:169-80. [DOI: 10.1089/cmb.2008.04tt] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
72
Hixson KK. Label-free relative quantitation of prokaryotic proteomes using the accurate mass and time tag approach. Methods Mol Biol 2009;492:39-63. [PMID: 19241026 DOI: 10.1007/978-1-59745-493-3_3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
73
Wilson JW, Ott CM, Quick L, Davis R, zu Bentrup KH, Crabbé A, Richter E, Sarker S, Barrila J, Porwollik S, Cheng P, McClelland M, Tsaprailis G, Radabaugh T, Hunt A, Shah M, Nelman-Gonzalez M, Hing S, Parra M, Dumars P, Norwood K, Bober R, Devich J, Ruggles A, CdeBaca A, Narayan S, Benjamin J, Goulart C, Rupert M, Catella L, Schurr MJ, Buchanan K, Morici L, McCracken J, Porter MD, Pierson DL, Smith SM, Mergeay M, Leys N, Stefanyshyn-Piper HM, Gorie D, Nickerson CA. Media ion composition controls regulatory and virulence response of Salmonella in spaceflight. PLoS One 2008;3:e3923. [PMID: 19079590 PMCID: PMC2592540 DOI: 10.1371/journal.pone.0003923] [Citation(s) in RCA: 90] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2008] [Accepted: 11/03/2008] [Indexed: 12/17/2022]  Open
74
Crowley CS, Sawaya MR, Bobik TA, Yeates TO. Structure of the PduU shell protein from the Pdu microcompartment of Salmonella. Structure 2008;16:1324-32. [PMID: 18786396 PMCID: PMC5878062 DOI: 10.1016/j.str.2008.05.013] [Citation(s) in RCA: 85] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2008] [Revised: 05/29/2008] [Accepted: 05/30/2008] [Indexed: 01/07/2023]
75
Sowell SM, Wilhelm LJ, Norbeck AD, Lipton MS, Nicora CD, Barofsky DF, Carlson CA, Smith RD, Giovanonni SJ. Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea. ISME JOURNAL 2008;3:93-105. [PMID: 18769456 DOI: 10.1038/ismej.2008.83] [Citation(s) in RCA: 245] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
76
Proteomic analysis of and immune responses to Ehrlichia chaffeensis lipoproteins. Infect Immun 2008;76:3405-14. [PMID: 18490460 DOI: 10.1128/iai.00056-08] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
77
Proteomic analysis of stationary phase in the marine bacterium "Candidatus Pelagibacter ubique". Appl Environ Microbiol 2008;74:4091-100. [PMID: 18469119 DOI: 10.1128/aem.00599-08] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
78
Webb-Robertson BJM, Cannon WR, Oehmen CS, Shah AR, Gurumoorthi V, Lipton MS, Waters KM. A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics. ACTA ACUST UNITED AC 2008;24:1503-9. [PMID: 18453551 DOI: 10.1093/bioinformatics/btn218] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
79
Callister SJ, McCue LA, Turse JE, Monroe ME, Auberry KJ, Smith RD, Adkins JN, Lipton MS. Comparative bacterial proteomics: analysis of the core genome concept. PLoS One 2008;3:e1542. [PMID: 18253490 PMCID: PMC2213561 DOI: 10.1371/journal.pone.0001542] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2007] [Accepted: 01/09/2008] [Indexed: 11/25/2022]  Open
80
Wu HJ, Wang AHJ, Jennings MP. Discovery of virulence factors of pathogenic bacteria. Curr Opin Chem Biol 2008;12:93-101. [DOI: 10.1016/j.cbpa.2008.01.023] [Citation(s) in RCA: 117] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2008] [Accepted: 01/15/2008] [Indexed: 01/10/2023]
81
Manes NP, Estep RD, Mottaz HM, Moore RJ, Clauss TRW, Monroe ME, Du X, Adkins JN, Wong SW, Smith RD. Comparative proteomics of human monkeypox and vaccinia intracellular mature and extracellular enveloped virions. J Proteome Res 2008;7:960-8. [PMID: 18205298 DOI: 10.1021/pr070432+] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
82
Alix E, Blanc-Potard AB. Peptide-assisted degradation of the Salmonella MgtC virulence factor. EMBO J 2008;27:546-57. [PMID: 18200043 DOI: 10.1038/sj.emboj.7601983] [Citation(s) in RCA: 103] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2007] [Accepted: 12/20/2007] [Indexed: 01/04/2023]  Open
83
Zhang C, Crasta O, Cammer S, Will R, Kenyon R, Sullivan D, Yu Q, Sun W, Jha R, Liu D, Xue T, Zhang Y, Moore M, McGarvey P, Huang H, Chen Y, Zhang J, Mazumder R, Wu C, Sobral B. An emerging cyberinfrastructure for biodefense pathogen and pathogen-host data. Nucleic Acids Res 2008;36:D884-91. [PMID: 17984082 PMCID: PMC2239001 DOI: 10.1093/nar/gkm903] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2007] [Revised: 10/04/2007] [Accepted: 10/05/2007] [Indexed: 01/07/2023]  Open
84
Ansong C, Yoon H, Norbeck AD, Gustin JK, McDermott JE, Mottaz HM, Rue J, Adkins JN, Heffron F, Smith RD. Proteomics analysis of the causative agent of typhoid fever. J Proteome Res 2008;7:546-57. [PMID: 18166006 DOI: 10.1021/pr070434u] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
85
Schmidt LD, Kohrt LJ, Brown DR. Comparison of growth phase on Salmonella enterica serovar Typhimurium invasion in an epithelial cell line (IPEC J2) and mucosal explants from porcine small intestine. Comp Immunol Microbiol Infect Dis 2008;31:63-9. [PMID: 17544508 PMCID: PMC10656783 DOI: 10.1016/j.cimid.2007.04.003] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/17/2007] [Indexed: 11/26/2022]
86
Klumpp J, Fuchs TM. Identification of novel genes in genomic islands that contribute to Salmonella typhimurium replication in macrophages. MICROBIOLOGY-SGM 2007;153:1207-1220. [PMID: 17379730 DOI: 10.1099/mic.0.2006/004747-0] [Citation(s) in RCA: 90] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
87
Guo A, Lasaro MA, Sirard JC, Kraehenbühl JP, Schifferli DM. Adhesin-dependent binding and uptake of Salmonella enterica serovar Typhimurium by dendritic cells. MICROBIOLOGY-SGM 2007;153:1059-1069. [PMID: 17379714 DOI: 10.1099/mic.0.2006/000331-0] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
88
Glasner JD, Plunkett G, Anderson BD, Baumler DJ, Biehl BS, Burland V, Cabot EL, Darling AE, Mau B, Neeno-Eckwall EC, Pot D, Qiu Y, Rissman AI, Worzella S, Zaremba S, Fedorko J, Hampton T, Liss P, Rusch M, Shaker M, Shaull L, Shetty P, Thotakura S, Whitmore J, Blattner FR, Greene JM, Perna NT. Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria. Nucleic Acids Res 2007;36:D519-23. [PMID: 17999997 PMCID: PMC2238966 DOI: 10.1093/nar/gkm973] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]  Open
89
Hébert L, Courtin P, Torelli R, Sanguinetti M, Chapot-Chartier MP, Auffray Y, Benachour A. Enterococcus faecalis constitutes an unusual bacterial model in lysozyme resistance. Infect Immun 2007;75:5390-8. [PMID: 17785473 PMCID: PMC2168276 DOI: 10.1128/iai.00571-07] [Citation(s) in RCA: 68] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
90
Oxygen restriction increases the infective potential of Listeria monocytogenes in vitro in Caco-2 cells and in vivo in guinea pigs. BMC Microbiol 2007;7:55. [PMID: 17570840 PMCID: PMC1899506 DOI: 10.1186/1471-2180-7-55] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2006] [Accepted: 06/14/2007] [Indexed: 11/10/2022]  Open
91
Webb-Robertson BJM, Peterson ES, Singhal M, Klicker KR, Oehmen CS, Adkins JN, Havre SL. PQuad—a visual analysis platform for proteomic data exploration of microbial organisms. Bioinformatics 2007;23:1705-7. [PMID: 17483503 DOI: 10.1093/bioinformatics/btm132] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
92
Manes NP, Gustin JK, Rue J, Mottaz HM, Purvine SO, Norbeck AD, Monroe ME, Zimmer JSD, Metz TO, Adkins JN, Smith RD, Heffron F. Targeted protein degradation by Salmonella under phagosome-mimicking culture conditions investigated using comparative peptidomics. Mol Cell Proteomics 2007;6:717-27. [PMID: 17228056 DOI: 10.1074/mcp.m600282-mcp200] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
93
Fink RC, Evans MR, Porwollik S, Vazquez-Torres A, Jones-Carson J, Troxell B, Libby SJ, McClelland M, Hassan HM. FNR is a global regulator of virulence and anaerobic metabolism in Salmonella enterica serovar Typhimurium (ATCC 14028s). J Bacteriol 2007;189:2262-73. [PMID: 17220229 PMCID: PMC1899381 DOI: 10.1128/jb.00726-06] [Citation(s) in RCA: 118] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]  Open
94
Snelling WJ, Lin Q, Moore JE, Millar BC, Tosini F, Pozio E, Dooley JSG, Lowery CJ. Proteomics analysis and protein expression during sporozoite excystation of Cryptosporidium parvum (Coccidia, Apicomplexa). Mol Cell Proteomics 2006;6:346-55. [PMID: 17124246 DOI: 10.1074/mcp.m600372-mcp200] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
95
Jaitly N, Monroe ME, Petyuk VA, Clauss TRW, Adkins JN, Smith RD. Robust Algorithm for Alignment of Liquid Chromatography−Mass Spectrometry Analyses in an Accurate Mass and Time Tag Data Analysis Pipeline. Anal Chem 2006;78:7397-409. [PMID: 17073405 DOI: 10.1021/ac052197p] [Citation(s) in RCA: 139] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
96
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