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For: Bernacchi S, Mély Y. Exciton interaction in molecular beacons: a sensitive sensor for short range modifications of the nucleic acid structure. Nucleic Acids Res 2001;29:E62-2. [PMID: 11433038 PMCID: PMC55786 DOI: 10.1093/nar/29.13.e62] [Citation(s) in RCA: 113] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
Number Cited by Other Article(s)
51
Boudier C, Storchak R, Sharma KK, Didier P, Follenius-Wund A, Muller S, Darlix JL, Mély Y. The mechanism of HIV-1 Tat-directed nucleic acid annealing supports its role in reverse transcription. J Mol Biol 2010;400:487-501. [PMID: 20493881 DOI: 10.1016/j.jmb.2010.05.033] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2010] [Accepted: 05/10/2010] [Indexed: 12/17/2022]
52
Lee L, Cavalieri F, Johnston APR, Caruso F. Influence of salt concentration on the assembly of DNA multilayer films. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2010;26:3415-3422. [PMID: 19891451 DOI: 10.1021/la9032145] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
53
Fujii T, Kashida H, Asanuma H. Analysis of coherent heteroclustering of different dyes by use of threoninol nucleotides for comparison with the molecular exciton theory. Chemistry 2010;15:10092-102. [PMID: 19722239 DOI: 10.1002/chem.200900962] [Citation(s) in RCA: 63] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
54
Inhibition of HIV-1 replication by a bis-thiadiazolbenzene-1,2-diamine that chelates zinc ions from retroviral nucleocapsid zinc fingers. Antimicrob Agents Chemother 2010;54:1461-8. [PMID: 20124006 DOI: 10.1128/aac.01671-09] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
55
Sánchez-Valencia JR, Toudert J, González-García L, González-Elipe AR, Barranco A. Excitation transfer mechanism along the visible to the Near-IR in rhodamine J-heteroaggregates. Chem Commun (Camb) 2010;46:4372-4. [DOI: 10.1039/c0cc00087f] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
56
Hirano T, Akiyama J, Mori S, Kagechika H. Modulation of intramolecular heterodimer-induced fluorescence quenching of tricarbocyanine dye for the development of fluorescent sensor. Org Biomol Chem 2010;8:5568-75. [DOI: 10.1039/c0ob00207k] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
57
Ikeda S, Kubota T, Yuki M, Okamoto A. Exciton-controlled hybridization-sensitive fluorescent probes: multicolor detection of nucleic acids. Angew Chem Int Ed Engl 2009;48:6480-4. [PMID: 19637175 DOI: 10.1002/anie.200902000] [Citation(s) in RCA: 87] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
58
Ikeda S, Kubota T, Yuki M, Okamoto A. Exciton-Controlled Hybridization-Sensitive Fluorescent Probes: Multicolor Detection of Nucleic Acids. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200902000] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
59
Gaind V, Webb KJ, Kularatne S, Bouman CA. Towards in vivo imaging of intramolecular fluorescence resonance energy transfer parameters. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2009;26:1805-13. [PMID: 19649115 DOI: 10.1364/josaa.26.001805] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
60
Imaging intracellular RNA distribution and dynamics in living cells. Nat Methods 2009;6:331-8. [PMID: 19404252 DOI: 10.1038/nmeth.1321] [Citation(s) in RCA: 323] [Impact Index Per Article: 20.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
61
Identification by high throughput screening of small compounds inhibiting the nucleic acid destabilization activity of the HIV-1 nucleocapsid protein. Biochimie 2009;91:916-23. [PMID: 19401213 DOI: 10.1016/j.biochi.2009.04.014] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2009] [Accepted: 04/15/2009] [Indexed: 11/22/2022]
62
Maxwell D, Chang Q, Zhang X, Barnett EM, Piwnica-Worms D. An improved cell-penetrating, caspase-activatable, near-infrared fluorescent peptide for apoptosis imaging. Bioconjug Chem 2009;20:702-9. [PMID: 19331388 PMCID: PMC2672423 DOI: 10.1021/bc800516n] [Citation(s) in RCA: 94] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
63
Chakraborty S, Sharma S, Maiti PK, Krishnan Y. The poly dA helix: a new structural motif for high performance DNA-based molecular switches. Nucleic Acids Res 2009;37:2810-7. [PMID: 19279188 PMCID: PMC2685084 DOI: 10.1093/nar/gkp133] [Citation(s) in RCA: 108] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
64
Nesterova IV, Erdem SS, Pakhomov S, Hammer RP, Soper SA. Phthalocyanine dimerization-based molecular beacons using near-IR fluorescence. J Am Chem Soc 2009;131:2432-3. [PMID: 19191492 PMCID: PMC2684671 DOI: 10.1021/ja8088247] [Citation(s) in RCA: 81] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
65
Chen X, Zhou Y, Qu P, Zhao XS. Base-by-Base Dynamics in DNA Hybridization Probed by Fluorescence Correlation Spectroscopy. J Am Chem Soc 2008;130:16947-52. [DOI: 10.1021/ja804628x] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
66
How the HIV-1 nucleocapsid protein binds and destabilises the (-)primer binding site during reverse transcription. J Mol Biol 2008;383:1112-28. [PMID: 18773912 DOI: 10.1016/j.jmb.2008.08.046] [Citation(s) in RCA: 82] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2008] [Accepted: 08/19/2008] [Indexed: 10/21/2022]
67
Chakraborty S, Krishnan Y. Kinetic hybrid i-motifs: Intercepting DNA with RNA to form a DNA2–RNA2 i-motif. Biochimie 2008;90:1088-95. [DOI: 10.1016/j.biochi.2008.02.022] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2007] [Accepted: 02/25/2008] [Indexed: 11/26/2022]
68
Mao X, Jiang J, Xu X, Chu X, Luo Y, Shen G, Yu R. Enzymatic amplification detection of DNA based on “molecular beacon” biosensors. Biosens Bioelectron 2008;23:1555-61. [DOI: 10.1016/j.bios.2008.01.019] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2007] [Revised: 12/13/2007] [Accepted: 01/14/2008] [Indexed: 11/29/2022]
69
Chakraborty S, Modi S, Krishnan Y. The RNA2-PNA2 hybrid i-motif-a novel RNA-based building block. Chem Commun (Camb) 2008:70-2. [PMID: 18401893 DOI: 10.1039/b713525d] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
70
Li JJ, Chu Y, Lee BYH, Xie XS. Enzymatic signal amplification of molecular beacons for sensitive DNA detection. Nucleic Acids Res 2008;36:e36. [PMID: 18304948 PMCID: PMC2346604 DOI: 10.1093/nar/gkn033] [Citation(s) in RCA: 191] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2007] [Revised: 01/09/2008] [Accepted: 01/21/2008] [Indexed: 01/19/2023]  Open
71
Egelé C, Piémont E, Didier P, Ficheux D, Roques B, Darlix JL, de Rocquigny H, Mély Y. The single-finger nucleocapsid protein of moloney murine leukemia virus binds and destabilizes the TAR sequences of HIV-1 but does not promote efficiently their annealing. Biochemistry 2007;46:14650-62. [PMID: 18027912 DOI: 10.1021/bi7012239] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
72
Liu X, Wang Y, Nakamura K, Liu G, Dou S, Kubo A, Rusckowski M, Hnatowich DJ. Optical antisense imaging of tumor with fluorescent DNA duplexes. Bioconjug Chem 2007;18:1905-11. [PMID: 17939728 DOI: 10.1021/bc700221d] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
73
Conley NR, Pomerantz AK, Wang H, Twieg RJ, Moerner WE. Bulk and single-molecule characterization of an improved molecular beacon utilizing H-dimer excitonic behavior. J Phys Chem B 2007;111:7929-31. [PMID: 17583944 PMCID: PMC2663424 DOI: 10.1021/jp073310d] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
74
Bourdoncle A, Estévez Torres A, Gosse C, Lacroix L, Vekhoff P, Le Saux T, Jullien L, Mergny JL. Quadruplex-based molecular beacons as tunable DNA probes. J Am Chem Soc 2007;128:11094-105. [PMID: 16925427 DOI: 10.1021/ja0608040] [Citation(s) in RCA: 97] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
75
Bullok KE, Maxwell D, Kesarwala AH, Gammon S, Prior JL, Snow M, Stanley S, Piwnica-Worms D. Biochemical and in vivo characterization of a small, membrane-permeant, caspase-activatable far-red fluorescent peptide for imaging apoptosis. Biochemistry 2007;46:4055-65. [PMID: 17348687 DOI: 10.1021/bi061959n] [Citation(s) in RCA: 76] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
76
Okoh MP, Hunter JL, Corrie JET, Webb MR. A biosensor for inorganic phosphate using a rhodamine-labeled phosphate binding protein. Biochemistry 2006;45:14764-71. [PMID: 17144669 DOI: 10.1021/bi060960j] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
77
Modi S, Wani AH, Krishnan Y. The PNA-DNA hybrid I-motif: implications for sugar-sugar contacts in i-motif tetramerization. Nucleic Acids Res 2006;34:4354-63. [PMID: 16936319 PMCID: PMC1636347 DOI: 10.1093/nar/gkl443] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]  Open
78
Li J, Wang F, Mamon H, Kulke MH, Harris L, Maher E, Wang L, Makrigiorgos GM. Antiprimer quenching-based real-time PCR and its application to the analysis of clinical cancer samples. Clin Chem 2006;52:624-33. [PMID: 16469859 DOI: 10.1373/clinchem.2005.063321] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
79
Goel G, Kumar A, Puniya AK, Chen W, Singh K. Molecular beacon: a multitask probe. J Appl Microbiol 2006;99:435-42. [PMID: 16108784 DOI: 10.1111/j.1365-2672.2005.02663.x] [Citation(s) in RCA: 76] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
80
Santangelo P, Nitin N, Bao G. Nanostructured Probes for RNA Detection in Living Cells. Ann Biomed Eng 2006;34:39-50. [PMID: 16463087 DOI: 10.1007/s10439-005-9003-6] [Citation(s) in RCA: 101] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2005] [Accepted: 09/30/2005] [Indexed: 01/29/2023]
81
Kieken F, Paquet F, Brulé F, Paoletti J, Lancelot G. A new NMR solution structure of the SL1 HIV-1Lai loop-loop dimer. Nucleic Acids Res 2006;34:343-52. [PMID: 16410614 PMCID: PMC1331991 DOI: 10.1093/nar/gkj427] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]  Open
82
Tian F, Johnson K, Lesar AE, Moseley H, Ferguson J, Samuel IDW, Mazzini A, Brancaleon L. The pH-dependent conformational transition of β-lactoglobulin modulates the binding of protoporphyrin IX. Biochim Biophys Acta Gen Subj 2006;1760:38-46. [PMID: 16297563 DOI: 10.1016/j.bbagen.2005.09.005] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2005] [Revised: 08/23/2005] [Accepted: 09/02/2005] [Indexed: 11/23/2022]
83
Egelé C, Schaub E, Piémont E, de Rocquigny H, Mély Y. Investigation by fluorescence correlation spectroscopy of the chaperoning interactions of HIV-1 nucleocapsid protein with the viral DNA initiation sequences. C R Biol 2005;328:1041-51. [PMID: 16314282 DOI: 10.1016/j.crvi.2005.06.005] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2005] [Revised: 05/26/2005] [Accepted: 07/27/2005] [Indexed: 11/23/2022]
84
Demchenko AP. Optimization of fluorescence response in the design of molecular biosensors. Anal Biochem 2005;343:1-22. [PMID: 16018869 DOI: 10.1016/j.ab.2004.11.041] [Citation(s) in RCA: 98] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2004] [Revised: 11/24/2004] [Accepted: 11/24/2004] [Indexed: 11/23/2022]
85
Long YT, Li CZ, Sutherland TC, Kraatz HB, Lee JS. Electrochemical detection of single-nucleotide mismatches: application of M-DNA. Anal Chem 2005;76:4059-65. [PMID: 15253643 DOI: 10.1021/ac049482d] [Citation(s) in RCA: 82] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
86
Beltz H, Clauss C, Piémont E, Ficheux D, Gorelick RJ, Roques B, Gabus C, Darlix JL, de Rocquigny H, Mély Y. Structural determinants of HIV-1 nucleocapsid protein for cTAR DNA binding and destabilization, and correlation with inhibition of self-primed DNA synthesis. J Mol Biol 2005;348:1113-26. [PMID: 15854648 DOI: 10.1016/j.jmb.2005.02.042] [Citation(s) in RCA: 79] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2005] [Revised: 02/17/2005] [Accepted: 02/17/2005] [Indexed: 11/30/2022]
87
Snowden KC, Simkin AJ, Janssen BJ, Templeton KR, Loucas HM, Simons JL, Karunairetnam S, Gleave AP, Clark DG, Klee HJ. The Decreased apical dominance1/Petunia hybrida CAROTENOID CLEAVAGE DIOXYGENASE8 gene affects branch production and plays a role in leaf senescence, root growth, and flower development. THE PLANT CELL 2005;17:746-59. [PMID: 15705953 PMCID: PMC1069696 DOI: 10.1105/tpc.104.027714] [Citation(s) in RCA: 287] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2004] [Accepted: 12/05/2004] [Indexed: 05/18/2023]
88
Simkin AJ, Schwartz SH, Auldridge M, Taylor MG, Klee HJ. The tomato carotenoid cleavage dioxygenase 1 genes contribute to the formation of the flavor volatiles beta-ionone, pseudoionone, and geranylacetone. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2004;40:882-92. [PMID: 15584954 DOI: 10.1111/j.1365-313x.2004.02263.x] [Citation(s) in RCA: 285] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
89
White SS, Ying L, Balasubramanian S, Klenerman D. Individual Molecules of Dye-Labeled DNA Act as a Reversible Two-Color Switch upon Application of an Electric Field. Angew Chem Int Ed Engl 2004;43:5926-30. [PMID: 15547896 DOI: 10.1002/anie.200460323] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
90
White SS, Ying L, Balasubramanian S, Klenerman D. Individual Molecules of Dye-Labeled DNA Act as a Reversible Two-Color Switch upon Application of an Electric Field. Angew Chem Int Ed Engl 2004. [DOI: 10.1002/ange.200460323] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
91
Egelé C, Schaub E, Ramalanjaona N, Piémont E, Ficheux D, Roques B, Darlix JL, Mély Y. HIV-1 nucleocapsid protein binds to the viral DNA initiation sequences and chaperones their kissing interactions. J Mol Biol 2004;342:453-66. [PMID: 15327946 DOI: 10.1016/j.jmb.2004.07.059] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2004] [Accepted: 07/19/2004] [Indexed: 11/17/2022]
92
Sharkey FH, Banat IM, Marchant R. Detection and quantification of gene expression in environmental bacteriology. Appl Environ Microbiol 2004;70:3795-806. [PMID: 15240248 PMCID: PMC444812 DOI: 10.1128/aem.70.7.3795-3806.2004] [Citation(s) in RCA: 69] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
93
Drake TJ, Tan W. Molecular beacon DNA probes and their bioanalytical applications. APPLIED SPECTROSCOPY 2004;58:269A-280A. [PMID: 15479516 DOI: 10.1366/0003702041959406] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
94
Beltz H, Piémont E, Schaub E, Ficheux D, Roques B, Darlix JL, Mély Y. Role of the structure of the top half of HIV-1 cTAR DNA on the nucleic acid destabilizing activity of the nucleocapsid protein NCp7. J Mol Biol 2004;338:711-23. [PMID: 15099739 DOI: 10.1016/j.jmb.2004.03.019] [Citation(s) in RCA: 53] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2004] [Revised: 03/01/2004] [Accepted: 03/01/2004] [Indexed: 11/27/2022]
95
Santangelo PJ, Nix B, Tsourkas A, Bao G. Dual FRET molecular beacons for mRNA detection in living cells. Nucleic Acids Res 2004;32:e57. [PMID: 15084672 PMCID: PMC390379 DOI: 10.1093/nar/gnh062] [Citation(s) in RCA: 295] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2003] [Revised: 03/24/2004] [Accepted: 03/24/2004] [Indexed: 12/18/2022]  Open
96
Baeumner AJ, Pretz J, Fang S. A Universal Nucleic Acid Sequence Biosensor with Nanomolar Detection Limits. Anal Chem 2004;76:888-94. [PMID: 14961717 DOI: 10.1021/ac034945l] [Citation(s) in RCA: 73] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
97
Liu J, Lu Y. Improving Fluorescent DNAzyme Biosensors by Combining Inter- and Intramolecular Quenchers. Anal Chem 2003;75:6666-72. [PMID: 14640743 DOI: 10.1021/ac034924r] [Citation(s) in RCA: 141] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
98
Mahara A, Iwase R, Sakamoto T, Yamaoka T, Yamana K, Murakami A. Detection of acceptor sites for antisense oligonucleotides on native folded RNA by fluorescence spectroscopy. Bioorg Med Chem 2003;11:2783-90. [PMID: 12788352 DOI: 10.1016/s0968-0896(03)00227-x] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
99
Tsourkas A, Behlke MA, Xu Y, Bao G. Spectroscopic Features of Dual Fluorescence/Luminescence Resonance Energy-Transfer Molecular Beacons. Anal Chem 2003;75:3697-703. [PMID: 14572032 DOI: 10.1021/ac034295l] [Citation(s) in RCA: 74] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Ha T, Xu J. Photodestruction intermediates probed by an adjacent reporter molecule. PHYSICAL REVIEW LETTERS 2003;90:223002. [PMID: 12857312 DOI: 10.1103/physrevlett.90.223002] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2001] [Revised: 12/05/2002] [Indexed: 05/24/2023]
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