Role of root exudates in metal acquisition and tolerance

The arbuscular mycorrhizal mycelium from barley differentially influences various defense parameters in the non-host sugar beet under co-cultivation

The interactions between arbuscular mycorrhizal fungi (AMF) and non-host species are poorly studied. Particularly scarce is information on members of the Amaranthaceae/Chenopodiaceae family. Sugar beet (Beta vulgaris) plants were co-cultivated with a host species (Hordeum vulgare) in the presence (+AMF) or absence of Rhizophagus intraradices to explore the hypothesis that the presence of an active, pre-established AMF mycelium induces defense responses in the non-host species. Biomass of sugar beet did not respond to the +AMF treatment, while its root exudation of organic acids and phenolic acids was drastically decreased upon co-cultivation with +AMF barley. The most conspicuous effect was observed on a wide range of potential defense parameters being differentially influenced by the +AMF treatment in this non-host species. Antioxidant defense enzymes were activated and the level of endogenous jasmonic acid was elevated accompanied by nitric oxide accumulation and lignin deposition in the roots after long-term +AMF treatment. In contrast, significant reductions in the levels of endogenous salicylic acid and tissue concentration and exudation of phenolic acids indicated that AM fungus hyphae in the substrate did not induce a hypersensitive-type response in the sugar beet roots and downregulated certain chemical defenses. Our results imply that the fitness of this non-host species is not reduced when grown in the presence of an AMF mycelium because of balanced defense costs. Further studies should address the question of whether or not such modulation of defense pattern influences the pest resistance of sugar beet plants under field conditions.

Single and Combined Fe and S Deficiency Differentially Modulate Root Exudate Composition in Tomato: A Double Strategy for Fe Acquisition?

Fe chlorosis is considered as one of the major constraints on crop growth and yield worldwide, being particularly worse when associated with S shortage, due to the tight link between Fe and S. Plant adaptation to inadequate nutrient availabilities often relies on the release of root exudates that enhance nutrients, mobilization from soil colloids and favour their uptake by roots. This work aims at characterizing the exudomic profile of hydroponically grown tomato plants subjected to either single or combined Fe and S deficiency, as well as at shedding light on the regulation mechanisms underlying Fe and S acquisition processes by plants. Root exudates have been analysed by untargeted metabolomics, through liquid chromatography-mass spectrometry as well as gas chromatography-mass spectrometry following derivatization. More than 200 metabolites could be putatively annotated. Venn diagrams show that 23%, 10% and 21% of differential metabolites are distinctively modulated by single Fe deficiency, single S deficiency or combined Fe-S deficiency, respectively. Interestingly, for the first time, a mugineic acid derivative is detected in dicot plants root exudates. The results seem to support the hypothesis of the co-existence of the two Fe acquisition strategies in tomato plants.

Mobility of metal(loid)s in Pb/Zn tailings under different revegetation strategies

Metal tailings are potential sources of strong environmental pollution. In situ remediation involves the installation of a plant cover to stabilize materials and pollutants. Whether metal(loid)s are effectively immobilized in remediated tailing ponds submitted to heavy rainfall remains uncertain. In this study, tailing materials were collected from bare tailings (control), grass-planted (G) and grass-shrub planted (GS) areas on a former Pb/Zn mine site. Batch column experiments were performed with three rainfall intensities of 0.36, 0.48, and 0.50 mL min^-1 for 18 d in the lab. The pH, Eh, Cd, Pb, Zn and As concentration in leachate were recorded. Selected leached tailing materials were finally characterized. Results showed that leachates from control were strongly acidic (pH 3.11-4.65), and that Cd, Pb, Zn and As were quickly released at high rate (e.g., 945 mg L^-1 Zn). During the experiment up to 4% Cd present in the material was released and almost 1% Zn. With material collected from the G area, leachates were even more acidic (2.16-2.84) with a rainfall intensity of 0.50 mL min^-1 and exhibited a high redox potential (588-639 mV). However, concentrations of metals in leachates were much lower than that in the control, except for Zn (e.g., 433 mg L^-1), and they tended to decrease with time. Cumulative leaching rate was still relatively high (e.g., 0.68% Cd; 0.75% Zn) during the first eight days (stage I). However, with the GS treatment, leachate pH gradually raised from acid to alkaline values (3.9-8.2) during stage I, then remained high until the end of the experiment (stage II). Also, amounts of elements released during the 18 d were low in general. The releasing ratios of Cd (R² > 0.95), Pb (R² > 0.95), As (R² > 0.87), and Zn (R² > 0.90) fitted well with a two-constant model. In conclusion, under subtropical climate with heavy rainfall, phytostabilization is effective but immobilization of metals is higher with a combination of grass and shrub than with only grass to reduce leaching of As and Zn.

Phytoremediation Potential of Crop Plants in Countering Nickel Contamination in Carbonation Lime Coming from the Sugar Industry

The phytoremediation potential of four crop species cultivated on carbonation lime coming from the sugar industry with water-soluble nickel (Ni) exceeding the Italian legal limit of 10 µg L^-1 was assessed. Two autumn-winter species (spinach and canola) were tested with and without the addition of bentonite in a greenhouse experiment in order to overcome prolonged unfavourable weather conditions. Two spring-summer species (sunflower and sorghum) were grown in outdoor boxes. Plant species were selected among crops of interest for phytoremediation and their rotation throughout the year enable to maintain a permanent vegetation cover. Nickel concentration in different plant tissues and the concentrations of soluble and bioavailable Ni in lime were measured. In the greenhouse study, soluble Ni decreased below the legal limit in all the tests, and the combined effect of bentonite and plants reduced Ni in lime mainly in the bioavailable fraction. Spinach and sunflower emerged to be more suitable for phytoextraction than canola and sorghum, because of the higher concentration of the metal in the epigeal portions. The results from the outdoor experiment highlighted that sorghum has a good phytostabilisation potential since its ability to accumulate Ni mainly at the root level and to attract a significant amount of bioavailable Ni in the rhizosphere. This study arose from a real scenario of environmental contamination and investigated the potential of different approaches on the bioremediation of a specific industrial waste product.

Zinc Hyperaccumulation in Plants: A Review

Zinc is an essential microelement involved in many aspects of plant growth and development. Abnormal zinc amounts, mostly due to human activities, can be toxic to flora, fauna, and humans. In plants, excess zinc causes morphological, biochemical, and physiological disorders. Some plants have the ability to resist and even accumulate zinc in their tissues. To date, 28 plant species have been described as zinc hyperaccumulators. These plants display several morphological, physiological, and biochemical adaptations resulting from the activation of molecular Zn hyperaccumulation mechanisms. These adaptations can be varied between species and within populations. In this review, we describe the physiological and biochemical as well as molecular mechanisms involved in zinc hyperaccumulation in plants.

The barrier function of plant roots: biological bases for selective uptake and avoidance of soil compounds

The root is the main organ through which water and mineral nutrients enter the plant organism. In addition, root fulfils several other functions. Here, we propose that the root also performs the barrier function, which is essential not only for plant survival but for plant acclimation and adaptation to a constantly changing and heterogeneous soil environment. This function is related to selective uptake and avoidance of some soil compounds at the whole plant level. We review the toolkit of morpho-anatomical, structural, and other components that support this view. The components of the root structure involved in selectivity, permeability or barrier at a cellular, tissue, and organ level and their properties are discussed. In consideration of the arguments supporting barrier function of plant roots, evolutionary aspects of this function are also reviewed. Additionally, natural variation in selective root permeability is discussed which suggests that the barrier function is constantly evolving and is subject of natural selection.

Toxicity of different forms of antimony to rice plant: Effects on root exudates, cell wall components, endogenous hormones and antioxidant system

Antimony (Sb) is a toxic element for both human and plants, but the toxic responses of plants to different forms of antimony and the associated mechanisms are unknown. This study was carried out to investigate the effects of different forms of Sb [Sb(III) and Sb(V)] on the root exudates, root endogenous hormones, root cell wall components and antioxidant systems in rice plant via three hydroponic experiments. The results showed that Sb(III) displayed a higher toxicity than Sb(V) to the plant which accumulated much more Sb in its tissues under Sb(III) exposure than that under Sb(V) exposure. Under Sb(III) exposure, most of absorbed Sb was found to be Sb(III) in the shoots and roots; however when plants were exposed to Sb(V), most of absorbed Sb in this rice plant was Sb(V). Only two kinds of endogenous hormones were detected as abscisic acid (ABA) and salicylic acid (SA). The addition of Sb(III) significantly increased the content of ABA but Sb(V) did not, probably suggesting the higher toxicity of Sb(III) than Sb(V) might be due to the stimulation of ABA content. The addition of Sb(III) significantly increased the concentration of oxalic acid but decreased the concentrations of formic, acetic and maleic acids. Sb(V) also enhanced the oxalic acid concentration at 20 mg L^-1 Sb(V) treatment level but reduced the concentrations of formic and acetic acids. Different forms of Sb dose-dependently increased the content of pectin, but significantly enhanced the content of lignin in cell wall. Different forms of Sb induced oxidative stress, but rice plant triggered the activities of superoxide dismutase (SOD) and ascorbate peroxidase (APX) to counteract the oxidative stress.

Mineralogy and Zn Chemical Speciation in a Soil-Plant System from a Metal-Extreme Environment: A Study on Helichrysum microphyllum subsp. tyrrhenicum (Campo Pisano Mine, SW Sardinia, Italy)

Environmental contamination due to human activities is a worldwide problem that has led to the development of different remediation techniques, including biotechnological approaches such as phytoextraction and phytostabilization. These techniques take advantage of pioneer plants that naturally develop tolerance mechanisms to survive in extreme environments. A multi-technique and multi-disciplinary approach was applied for the investigation of Helichrysum microphyllum subsp. tyrrhenicum samples, bulk soil, and rhizospheres collected from a metal-extreme environment (Zn-Pb mine of Campo Pisano, SW Sardinia, Italy). Zinc, Pb, and Cd are the most abundant metals, with Zn attaining 3 w/w% in the rhizosphere solid materials, inducing oxidative stress in the roots as revealed by infrared microspectroscopy (IR). X-ray diffraction (XRD), scanning electron microscopy (SEM), and chemical analysis coupled with synchrotron radiation-based (SR) techniques demonstrate that quartz, dolomite, and weddellite biominerals precipitate in roots, stems, and leaves, likely as a response to environmental stress. In the rhizosphere, Zn chemical speciation is mainly related to the Zn ore minerals (smithsonite and hydrozincite) whereas, in plant tissues, Zn is primarily bound to organic compounds such as malate, cysteine, and histidine molecules that act as metal binders and, eventually, detoxification agents for the Zn excess. These findings suggest that H. microphyllum subsp. tyrrhenicum has developed its own adaptation strategy to survive in polluted substrates, making it a potential candidate for phytostabilization aimed at mitigating the dispersion of metals in the surrounding areas.

Unique root exudate tartaric acid enhanced cadmium mobilization and uptake in Cd-hyperaccumulator Sedum alfredii

Low molecular weight organic acids (LMWOA) involved in heavy metal tolerance, translocation, and accumulation in plants. However, underlying mechanism of LMWOA secretion in metal mobilization and uptake in hyperaccumulator still need to be identified. In this study, a ¹³C labeling rhizobox was designed to investigate the composition and distribution of LMWOA in the rhizosphere of S. alfredii. The result showed that about 2.30%, 2.25% and 2.35% of the assimilated ¹³C was incorporated into oxalic acid, malic acid, and tartaric acid in rhizosphere of S. alfredii after ¹³CO₂ assimilation, respectively. Oxalic acid, malic acid, and tartaric acid were the predominant LMWOA in rhizosphere soil solution of hyperaccumulating ecotype (HE) S. alfredii, however, almost no tartaric acid was detected for non-hyperaccumulating ecotype (NHE). Tartaric acid was identified as the unique root exudate from HE S. alfredii which was mainly distributed within the range of rhizosphere 0-6 mm. Tartaric acid significantly increased the solubility of four Cd minerals. HE S. alfredii treated with tartrate + CdCO₃ had higher Cd contents and larger biomass than CdCO₃ treatment. Cadmium accumulation in HE S. alfredii was promoted by the exudation of tartaric acid, which was highly efficient in Cd solubilization due to the formation of soluble Cd-tartrate complexes.

A Return to the Wild: Root Exudates and Food Security

Challenges to food security under conditions of global change are forcing us to increase global crop production. Focussing on belowground plant traits, especially root exudation, has great promise to meet this challenge. Root exudation is the release of a vast array of compounds into the soil. These exudates are involved in many biotic and abiotic interactions. Wild relatives of crops provide a large potential source of information and genetic material and have desirable traits that could be incorporated into modern breeding programs. However, root exudates are currently underexploited. Here, we highlight how the traits of root exudates of crop wild relatives could be used to improve agricultural output and reduce environmental impacts, particularly by decreasing our dependence on pesticides and fertilisers.

Interactions between decabromodiphenyl ether and lead in soil-plant system

Pot experiments were conducted under abiotic conditions to investigate the interactive influence of decabromodiphenyl ether (BDE-209) and lead (Pb) on the seed germination, germ length, root exudation and physiological characteristics of tall fescue (Festuca arundinaceae), and the uptake, accumulation of Pb and BDE-209 in the plant tissues. Results show that seed germination and germ length were impacted by Pb but less influenced by BDE-209. BDE-209 spiking (10 and 50 mg/L) could alleviate the toxicity of high Pb concentration on seed germination and growth. The chlorophyll content was significantly increased at 500 mg/kg Pb but declined at 2000 mg/kg Pb. Low-level Pb contamination (500 mg/kg) activated antioxidase activity; however, 2000 mg/kg Pb significantly reduced the antioxidase activity. Plant biomass slightly decreased at 500 mg/kg Pb but significantly declined at 2000 mg/kg Pb. The addition of a moderate dosage of BDE-209 (10-50 mg/kg) lessened Pb phytotoxicity, leading to improved plant growth relative to the case of Pb spiking alone. The exudate secretion was significantly enhanced by Pb addition, but BDE-209 spiking only caused slightly increased secretion. Pb could interfere with BDE-209 adsorption and translocation of tall fescue by affecting physiological behavior of the plant, but BDE-209 exhibited little influence on the Pb fate in the plant. Overall, BDE-209 had slight interference on the impact of Pb towards tall fescue. The results demonstrate the complex interactive effects of organic pollutants and heavy metals in the soil-plant system.

Cadmium allocation to grains in durum wheat exposed to low Cd concentrations in hydroponics

This study aims to characterize the response of durum wheat to different concentrations of Cd found in agricultural soils. One French durum wheat cultivar (i.e. Sculptur) was exposed to low concentrations of Cd (5 nM or 100 nM) in hydroponics. After anthesis, the plants were fed with a solution enriched with the stable isotope ¹¹¹Cd to trace the newly absorbed Cd. Plants were sampled at anthesis and grain maturity to assess how plant growth, Cd uptake and partitioning among organs, as well as Cd remobilization, differed between the two Cd exposure levels. Durum wheat did not show any visual symptoms of Cd toxicity, regardless of which Cd treatment was applied. However, post-anthesis durum wheat growth was 14% penalized at 100 nM due to the large transpiration-based accumulation of Cd in leaves at this stage. The allocation of Cd to the grains was not restricted but enhanced at 100 nM compared to 5 nM. Both the root-to-shoot Cd translocation and the fraction of aboveground Cd allocated to grains were higher in plants exposed to 100 nM. Cadmium was remobilized exclusively from roots and stems, and remobilized Cd contributed on average to 40-45% of the Cd accumulated in mature grains, regardless of which Cd treatment was applied. The relevance of these results to decreasing the concentration of Cd in durum wheat grains is discussed.

Metabolomic Profiling of Carotenoid Constituents in Physalis peruviana During Different Growth Stages by LC-MS/MS Technology

With the current ongoing changes in global food demands, natural carotenoids are preferred by consumers and are gaining attention among food scientists and producers alike. Metabolomic profiling of carotenoid constituents in Physalis peruviana during distinct on-tree growth stages was performed with liquid chromatography-tandem mass spectrometry (LC-MS/MS) technology. The results show that the β rings of β-carotene are hydroxylated with great efficiency, and there is a continual synthesis of zeaxanthin at half-ripe and full-ripe stages, which is confirmed by relating the zeaxanthin content to that of its precursor (β-carotene). Lutein was, in terms of mass intensity, the most abundant carotenoid constituent (64.61 µg/g at the half-ripe stage) observed in this study. In addition, γ-carotene, which is rare in dietary fruits and vegetables, was detected in the mature and breaker stages, albeit at a relatively low level. The results suggest that when we consider the variation in carotenoid content during different growth stages, Physalis peruviana can be considered a good source of natural carotenoids.

Metal ligands in micronutrient acquisition and homeostasis

Acquisition and homeostasis of micronutrients such as iron (Fe) and zinc (Zn) pose specific challenges. Poor solubility and high reactivity require controlled synthesis and supply of ligands to complex these metals extracellularly and intracellularly. Cytosolic labile pools represent only a minute fraction of the total cellular content. Several low-molecular-weight ligands are known in plants, including sulfur ligands (cysteine and peptides), nitrogen/oxygen ligands (S-adenosyl-l-methionine-derived molecules and histidine), and oxygen ligands (phenolics and organic acids). Some ligands are secreted into the extracellular space and influence the phytoavailability of metal ions. A second principal function is the intracellular buffering of micronutrients as well as the facilitation of long-distance transport in xylem and phloem. Furthermore, low-molecular-weight ligands are involved in the storage of metals, predominantly in vacuoles. A detailed molecular understanding is hampered by technical limitations, in particular the difficulty to detect and quantify cellular metal-ligand complexes. More, but still too little, is known about ligand synthesis and the transport across membranes, either with or without a complexed metal. Metal ligands have an immediate impact on human well-being. Engineering metal ligand synthesis and distribution in crops has tremendous potential to improve the nutritional quality of food and to tackle major human health risks.

Constitutive expression of GmF6'H1 from soybean improves salt tolerance in transgenic Arabidopsis

Coumarin plays a pivotal role in plant response to biotic stress, as well as in the mediation of nutrient acquisition. However, its functions in response to abiotic stresses are largely unknown. In this work, a homologous gene, GmF6'H1, of AtF6'H1, which encodes the enzyme catalyzing the final rate-limiting step in the biosynthesis pathway of coumarin, was isolated from soybean. GmF6'H1 protein shares very high amino acid identity with AtF6'H1, and expression of GmF6'H1 in atf6'h1 can successfully restore the decreased coumarin production in the T-DNA insertion mutant. Further study revealed that the expression of GmF6'H1 in soybean was remarkably induced by salt stress. Constitutive expression of GmF6'H1 in Arabidopsis, driven by 35S promoter, significantly enhanced the resistance to salt of transgenic Arabidopsis. All these results suggest that GmF6'H1 can be used as a potential candidate gene for the engineering of plants with improved resistance to both biotic and abiotic stresses.

Pre-aeration of the rhizosphere offers potential for phytoremediation of heavy metal-contaminated wetlands

Two solution cultures with different oxygen pretreatments were used to investigate (ⅰ) the variation in the radial oxygen loss in the roots and root morphology of Triarrhena sacchariflora seedlings and (ii) their tolerance to Cu²⁺ and Cd²⁺, as well as both the metal uptake and accumulation by pretreated seedlings. Developed aerenchyma in the roots was induced by the hypoxia pretreatment (HP) and aeration pretreatment (AP), for which root porosity, respectively, increased by 45.76%-53.39% and 84.07%-88.66%. AP altered the natural radial oxygen loss coupled to an enhanced secretion of oxygen in the root tips. AP was found to effectively improve the seedlings' tolerance to Cu²⁺ and Cd²⁺, facilitating their growth, thereby increasing their root diameter, dry weight, and number of root tips, as well as promoting shoot growth. AP was capable of promoting the uptake and bioaccumulation in seedlings of Cu²⁺ and Cd²⁺; it also induced more Cu²⁺ and Cd²⁺ immobilized in roots so that less of either metal was transported from roots to shoots, which may well be a key mechanism for strengthening seedlings' tolerance to metal ions. Our experimental results suggest that AP offers great potential for the remediation of heavy metal-contaminated wetlands.

The Yin and Yang of Iron in Plants and Beyond: 19th International Symposium on Iron Nutrition and Interactions in Plants (ISINIP) in Taiwan

The19th edition of the International Symposium on Iron Nutrition and Interactions in Plants, a biannual meeting initiated in 1981, took place in Taiwan for the first time. The five-day event was held at the Academia Sinica campus in the Southeast of Taiwan's capital city Taipei, and hosted around 200 scientists from around the world. The meeting covered a diverse array of topics centered around iron nutrition, including but not limited to soil processes, biofortification, transport, signaling and molecular processes regulating the cellular homeostasis of iron. Here, I review the research foci highlighted during the meeting by oral and poster presentations.

Profiling of main metabolites in root exudates and mucilage collected from maize submitted to cadmium stress

The aim of this study was to characterize qualitatively and quantitatively the composition of the main rhizodeposits emitted from maize (Zea mays) under Cd stress, in order to discuss their role in Cd availability and tolerance. Maize was grown for 6 weeks in sand at four Cd exposure levels (0, 10, 20, and 40 μM Cd in nutrient solution) and two types of rhizodeposits were collected at the end of cultivation period. Mucilage and other molecules adhering to rhizospheric sand were extracted with a buffer before root exudates were collected by diffusion into water. Total carbon, proteins, amino acids, and sugars were analyzed for both rhizodeposit types and about 40 molecules were identified using GC-MS and LC-MS. Cadmium effect on plant morphology and functioning was slight, but consistent with previous works on Cd toxicity. However, rhizodeposition did tend to be impacted, with a decrease in total carbon, sugars, and amino acids correlating with an increasing Cd content. Such a decrease was not noticeable for proteins in root exudates. These observations were confirmed by the same trends in individual compound contents, although the results were generally not statistically significant. Many of the molecules determined are well-known to modify, whether directly or indirectly, Cd speciation and dynamics in the soil and could play a role in Cd tolerance.

From Leguminosae/Gramineae Intercropping Systems to See Benefits of Intercropping on Iron Nutrition

To achieve sustainable development with a growing population while sustaining natural resources, a sustainable intensification of agriculture is necessary. Intercropping is useful for low-input/resource-limited agricultural systems. Iron (Fe) deficiency is a worldwide agricultural problem owing to the low solubility and bioavailability of Fe in alkaline and calcareous soils. Here, we summarize the effects of intercropping systems on Fe nutrition. Several cases showed that intercropping with graminaceous plants could be used to correct Fe nutrition of Leguminosae such as peanut and soybean or fruits such as Psidium guajava L., Citrus, grape and pear in calcareous soils. Intercropping systems have strong positive effects on the physicochemical and biochemical characteristics of soil and the microbial community due to interspecific differences and interactions in the rhizosphere. Rhizosphere interactions can increase the bioavailability of Fe with the help of phytosiderophores. Enriched microorganisms may also facilitate the Fe nutrition of crops. A peanut/maize intercropping system could help us understand the dynamics in rhizosphere and molecular mechanism. However, the role of microbiome in regulating Fe acquisition of root and the mechanisms underlying these phenomena in other intercropping system except peanut/maize need further work, which will help better utilize intercropping to increase the efficiency of Fe foraging.

The role of the cell walls in Ni binding by plant roots

The role of the cell wall in short-term Ni uptake at different solution Ni levels was investigated in mung bean (Vigna radiata (L.) R. Wilczek) and wheat (Triticum aestivum L., cv. Inna). Both Ni-binding capacity of the CWs and roots are lower for wheat than for mung bean at all Ni levels in the solution. For both plants amounts of Ni associated with roots and root cell walls increased with Ni concentration. The contribution of CWs to Ni absorption by roots depends on Ni level in the medium and plant species. The Ni accumulated in CWs could account for total Ni content of roots (except for wheat in highest Ni treatment). Besides, mung bean plants employ the strategy of reducing Ni accumulation in the root CWs during exposure to excess but not toxic solution Ni level. According to the results, predominant Ni binding in the apoplast of mung bean and wheat roots is observed at both high and low external Ni, which suggests that apoplastic pathway is the main means of Ni transport in the root cortex of these species.

Small-Molecules Selectively Modulate Iron-Deficiency Signaling Networks in Arabidopsis

Plant growth requires optimal levels of iron (Fe). Fe is used for energy production, numerous enzymatic processes, and is indispensable for cellular metabolism. Recent studies have established the mechanism involved in Fe uptake and transport. However, our knowledge of Fe sensing and signaling is limited. Dissecting Fe signaling may be useful for crop improvement by Fe fortification. Here, we report two small-molecules, R3 and R6 [where R denotes repressor of IRON-REGULATED TRANSPORTER 1 (IRT1)], identified through a chemical screening, whose use blocked activation of the Fe-deficiency response in Arabidopsis thaliana. Physiological analysis of plants treated with R3 and R6 showed that these small molecules drastically attenuated the plant response to Fe starvation. Small-molecule treatment caused severe chlorosis and strongly reduced chlorophyll levels in plants. Fe content in shoots was decreased considerably by small-molecule treatments especially in Fe deficiency. Small-molecule treatments attenuated the Fe-deficiency-induced expression of the Fe uptake gene IRT1. Analysis of FER-LIKE IRON-DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT) and subgroup Ib basic helix-loop-helix (bHLH) gene (bHLH38/39/100/101) expression showed that R3 affects the FIT-network, whereas R6 affects both the FIT and Ib bHLH networks. An assessment of the effects of the structural analogs of R3 and R6 on the induction of Fe-dependent chlorosis revealed the functional motif of the investigated chemicals. Our findings suggest that small-molecules selectively modulate the distinct signaling routes that operate in response to Fe-deficiency. R3 and R6 likely interrupt the activity of key upstream signaling regulators whose activities are required for the activation of the Fe-starvation transcriptional cascade in Arabidopsis roots.

Rhizosphere Microenvironments of Eight Common Deciduous Fruit Trees Were Shaped by Microbes in Northern China

The rhizosphere microenvironment is the site of nutrient circulation and microbial community formation, and thus is an ongoing topic of research. Although research on this topic is extensive, studies into the rhizosphere microenvironment of fruit trees remain rare. To elucidate the mechanisms driving the fruit tree rhizosphere microenvironment, we assessed soil physicochemical properties, enzyme activities, the community-level physiological profile (CLPP) and microbial diversity in rhizospheric soils of eight common deciduous fruit trees in northern China. We found that the available minerals, pH, enzyme activities, microbial utilization of six types of carbon (C) substrates, and microbial diversity in the rhizosphere varied among tree species. Redundancy analysis (RDA) showed that rhizosphere microenvironmental parameters (ammonia nitrogen content, soil pH and invertase activity) were closely related to the soil microbial community. Further analysis revealed that the soil microbial utilization of six C sources, nitrate nitrogen content, and invertase activity were negatively correlated with Ambiguous species and Alternaria; however, these groups were positively correlated with pH. The ammonia nitrogen content was positively correlated with C source utilization and negatively correlated with Ambiguous, Lysobacter, Nitrospira, Alternaria, Fusarium, and Colletotrichum. Interestingly, invertase was closely linked to the microbial community, especially fungal diversity, and was positively correlated with plant-beneficial microbes such as Mortierella, Geomyces, Lysobacter, and Chaetomium, but negatively correlated with pathogenic microbes such as Alternaria, Fusarium, and Colletotrichum. Hence, rhizosphere soil physicochemical properties, enzyme activities and microbial community were significantly affected by tree species. Additionally, a variety of environmental factors were closely related to the microbial community in the rhizospheric soils of eight species of deciduous fruit trees.

Mechanisms of organic acids and boron induced tolerance of aluminum toxicity: A review

Aluminum is a major limiting abiotic factor for plant growth and productivity on acidic soils. The primary disorder of aluminum toxicity is the rapid cessation of root elongation. The root apex is the most sensitive part of this organ. Although significant literature evidence and hypothesis exist on aluminum toxicity, the explicit mechanism through which aluminum ceases root growth is still indefinable. The mechanisms of tolerance in plants have been the focus of intense research. Some plant species growing on acidic soils have developed tolerance mechanisms to overcome and mitigate aluminum toxicity, either by avoiding entry of Al³⁺ into roots (exclusion mechanism) or by being able to counterbalance toxic Al³⁺ engrossed by the root system (internal tolerance mechanism). Genes belonging to ALMT (Aluminum-activated malate transporter) and MATE (Multidrug and toxin compounds extrusion) have been identified that are involved in the aluminum-activated secretion of organic acids from roots. However, different plant species show different gene expression pattern. On the other hand, boron (B) (indispensable micronutrient) is a promising nutrient in the tolerance to aluminum toxicity. It not only hinders the adsorption of aluminum to the cell wall but also improves plant growth. This review mainly explains the critical roles of organic acid and B-induced tolerance to aluminum by summarizing the mechanisms of ALMT, MATE, internal detoxification, molecular traits and genetic engineering of crops.

Mycoextraction: Rapid Cadmium Removal by Macrofungi-Based Technology from Alkaline Soil

Fungi are promising materials for soil metal bioextraction and thus biomining. Here, a macrofungi-based system was designed for rapid cadmium (Cd) removal from alkaline soil. The system realized directed and rapid fruiting body development for subsequent biomass harvest. The Cd removal efficiency of the system was tested through a pot culture experiment. It was found that aging of the added Cd occurred rapidly in the alkaline soil upon application. During mushroom growth, the soil solution remained considerably alkaline, though a significant reduction in soil pH was observed in both Cd treatments. Cd and dissolved organic carbon (DOC) in soil solution generally increased over time and a significant correlation between them was detected in both Cd treatments, suggesting that the mushroom‒substratum system has an outstanding ability to mobilize Cd in an alkaline environment. Meanwhile, the growth of the mushrooms was not affected relative to the control. The estimated Cd removal efficiency of the system was up to 12.3% yearly thanks to the rapid growth of the mushroom and Cd enrichment in the removable substratum. Transcriptomic analysis showed that gene expression of the fruiting body presented considerable differences between the Cd treatments and control. Annotation of the differentially expressed genes (DEGs) indicated that cell wall sorption, intracellular binding, and vacuole storage may account for the cellular Cd accumulation. In conclusion, the macrofungi-based technology designed in this study has the potential to become a standalone biotechnology with practical value in soil heavy metal removal, and continuous optimization may make the system useful for biomining.

Salix viminalis L. - A highly effective plant in phytoextraction of elements

The aim of the study was to compare specimens of Salix viminalis L. able to grow in polluted mining sludge (A1) with specimens of the same willow clone growing in two unpolluted areas (A2 and A3). Plants from the polluted area were characterized by the highest accumulation of the majority of elements in their organs with a clear limitation of their uptake to roots and effective translocation to aboveground organs. Willows from the unpolluted areas were characterized by significantly higher biomass than the treated plants, as shown in the content of cellulose/holocellulose. The different chemical characteristics of the substrates influenced tree physiology, including the organic acids and phenolic compounds profile and/or content. The total content of organic acids in lateral roots was higher for S. viminalis L. grown in unpolluted areas, while for leaves the opposite situation was observed. However, their creation was significantly correlated with the content of the majority of elements in the organs of S. viminalis L. Enhanced synthesis of phenolic compounds in roots (besides quercetin) and in leaves (besides myricetin and quercetin) was confirmed in the polluted area, and correlated with metal content in plant organs. Resilient plants characterized not only by their survivability but also by their effective phytoextraction of toxic metals, have great potential for widespread practical application on highly polluted mining sludge and for reducing the associated threat to human health. The obtained results suggest that further investigation of these plants is necessary to determine the mechanism(s) responsible for their high survivability.

Effects of toxin from Bacillus thuringiensis (Bt) on sorption of Pb (II) in red and black soils: equilibrium and kinetics aspects

Bt crops have been widely commercialized for cultivation in the world, but as yet, the effects of Bt toxin on sorption of heavy metals in soils has not been reported. In this study, the effects of toxin from Bacillus thuringiensis on Pb (II) sorption by red (Ultisol) and black soil (Vertisol) were studied using the batch method. The results showed that Pb(II) sorption by both soil types decreased in the presence of Bt toxin from 0 to 10 mg/L, which was probably due to the sorptive sites competition and Pb-toxin complex formation. The Langmuir and Freundlich isotherm models were fitted well to the sorption data at different Bt toxin additions. The sorption capacity of black soil for Pb (II) was higher than that of red soil, however, the influential trends of Bt toxin to the maximum capacity of Pb (II) in both soils was reversed. Sorption of Pb (II) in both soils was rapid and reached equilibrium within 80 min, following the pseudo-second-order kinetic model. Decreasing sorption of Pb (II) by red and black soils was observed in the presence of Bt toxin, suggesting that the environmental risk of Pb(II) may increase if Bt toxin is released by Bt crops.

Rhizosphere interactions between copper oxide nanoparticles and wheat root exudates in a sand matrix: Influences on copper bioavailability and uptake

The impact of copper oxide nanoparticles (CuONPs) on crop production is dependent on the biogeochemistry of Cu in the rooting zone of the plant. The present study addressed the metabolites in wheat root exudates that increased dissolution of CuONPs and whether solubility correlated with Cu uptake into the plant. Bread wheat (Triticum aestivum cv. Dolores) was grown for 10 d with 0 to 300 mg Cu/kg as CuONPs in sand, a matrix deficient in Fe, Zn, Mn, and Cu for optimum plant growth. Increased NP doses enhanced root exudation, including the Cu-complexing phytosiderophore, 2'-deoxymugineic acid (DMA), and corresponded to greater dissolution of the CuONPs. Toxicity, observed as reduced root elongation, was attributable to a combination of CuONPs and dissolved Cu complexes. Geochemical modeling predicted that the majority of the solution phase Cu was complexed with citrate at low dosing or DMA at higher dosing. Altered biogeochemistry within the rhizosphere correlated with bio-responses via exudate type, quantity, and metal uptake. Exposure of wheat to CuONPs led to dose-dependent decreases in Fe, Ca, Mg, Mn, and K in roots and shoots. The present study is relevant to growth of a commercially important crop, wheat, in the presence of CuONPs as a fertilizer, fungicide, or pollutant. Environ Toxicol Chem 2018;37:2619-2632. © 2018 SETAC.

Overview on the Bacterial Iron-Riboflavin Metabolic Axis

Redox reactions are ubiquitous in biological processes. Enzymes involved in redox metabolism often use cofactors in order to facilitate electron-transfer reactions. Common redox cofactors include micronutrients such as vitamins and metals. By far, while iron is the main metal cofactor, riboflavin is the most important organic cofactor. Notably, the metabolism of iron and riboflavin seem to be intrinsically related across life kingdoms. In bacteria, iron availability influences expression of riboflavin biosynthetic genes. There is documented evidence for riboflavin involvement in surpassing iron-restrictive conditions in some species. This is probably achieved through increase in iron bioavailability by reduction of extracellular iron, improvement of iron uptake pathways and boosting hemolytic activity. In some cases, riboflavin may also work as replacement of iron as enzyme cofactor. In addition, riboflavin is involved in dissimilatory iron reduction during extracellular respiration by some species. The main direct metabolic relationships between riboflavin and iron in bacterial physiology are reviewed here.

S-Nitrosoglutathione works downstream of nitric oxide to mediate iron-deficiency signaling in Arabidopsis

Iron (Fe) is essential for plant growth and development. Knowledge of Fe signaling, from the beginning of perception to activation of the uptake process, is critical for crop improvement. Here, by using chemical screening, we identified a small molecule 3-amino-N-(3-methylphenyl)thieno[2,3-b]pyridine-2-carboxamide named R7 ('R' denoting repressor of IRON-REGULATED TRANSPORTER 1), that modulates Fe homeostasis of Arabidopsis. R7 treatment led to reduced Fe levels in plants, thus causing severe chlorosis under Fe deficiency. Expression analysis of central transcription factors, FER-LIKE IRON DEFICIENCY INDUCED TRANSCRIPTION FACTOR (FIT) and subgroup Ib basic helix-loop-helix (Ib bHLH) genes bHLH38/39/100/101, revealed that R7 targets the FIT-dependent transcriptional pathway. Exogenously supplying S-nitrosoglutathione (GSNO), but not other nitric oxide (NO) donors sodium nitroprusside (SNP) and S-nitroso-N-acetyl-dl-penicillamine (SANP), alleviated the inhibitory effects of R7 on Fe homeostasis. R7 did not inhibit cellular levels of NO or glutathione but decreased GSNO level in roots. We demonstrate that NO is involved in regulating not only the FIT transcriptional network but also the Ib bHLH networks. In addition, GSNO, from S-nitrosylation of glutathione, specifically mediates the Fe-starvation signal to FIT, which is distinct from the NO to Ib bHLH signal. Our work dissects the molecular connection between NO and the Fe-starvation response. We present a new signaling route whereby GSNO acts downstream of NO to trigger the Fe-deficiency response in Arabidopsis.